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authorAlbert Cheng <acheng@hdfgroup.org>2008-02-01 05:51:09 (GMT)
committerAlbert Cheng <acheng@hdfgroup.org>2008-02-01 05:51:09 (GMT)
commit76958a8e308fc1f0b80929f30dcee9ef43fa3cec (patch)
tree8637d1546652fbbb62ed77f9b03b0930d9dc8356
parent76cdc6c1ca9d35c7d27f038ede949c70560fdece (diff)
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[svn-r14483] Added the new tool, h5recover, which is for the Sandia project for
file recovery after a crash. Tested: linux (kagiso), linux64 (smirom), Solaris 10 (linew, in progress).
-rwxr-xr-xconfigure6
-rw-r--r--configure.in2
-rw-r--r--tools/Makefile.am2
-rw-r--r--tools/Makefile.in2
-rw-r--r--tools/h5recover/Makefile.am48
-rw-r--r--tools/h5recover/Makefile.in856
-rw-r--r--tools/h5recover/testh5recover.sh.in124
-rw-r--r--tools/h5recover/trecover.h30
-rw-r--r--tools/h5recover/trecover_crasher.c42
-rw-r--r--tools/h5recover/trecover_main.c28
-rw-r--r--tools/h5recover/trecover_writer.c157
11 files changed, 1293 insertions, 4 deletions
diff --git a/configure b/configure
index 47c8d99..1eba2e2 100755
--- a/configure
+++ b/configure
@@ -1,5 +1,5 @@
#! /bin/sh
-# From configure.in Id: configure.in 14215 2007-10-21 22:18:13Z epourmal .
+# From configure.in Id: configure.in 14270 2007-11-20 04:43:58Z acheng .
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.61 for HDF5 1.8.0-beta4post1.
#
@@ -52156,7 +52156,7 @@ if test -n "$TESTPARALLEL"; then
fi
fi
-ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile test/testerror.sh testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumpxml.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile examples/Makefile examples/testh5cc.sh c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/examples/Makefile c++/examples/testh5c++.sh fortran/Makefile fortran/src/h5fc fortran/src/libhdf5_fortran.settings fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile fortran/examples/testh5fc.sh hl/Makefile hl/src/Makefile hl/test/Makefile hl/tools/Makefile hl/tools/gif2h5/Makefile hl/examples/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile"
+ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile test/testerror.sh testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumpxml.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/h5recover/Makefile tools/h5recover/testh5recover.sh tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile examples/Makefile examples/testh5cc.sh c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/examples/Makefile c++/examples/testh5c++.sh fortran/Makefile fortran/src/h5fc fortran/src/libhdf5_fortran.settings fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile fortran/examples/testh5fc.sh hl/Makefile hl/src/Makefile hl/test/Makefile hl/tools/Makefile hl/tools/gif2h5/Makefile hl/examples/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile"
cat >confcache <<\_ACEOF
@@ -52830,6 +52830,8 @@ do
"tools/h5repack/h5repack.sh") CONFIG_FILES="$CONFIG_FILES tools/h5repack/h5repack.sh" ;;
"tools/h5ls/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5ls/Makefile" ;;
"tools/h5copy/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5copy/Makefile" ;;
+ "tools/h5recover/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5recover/Makefile" ;;
+ "tools/h5recover/testh5recover.sh") CONFIG_FILES="$CONFIG_FILES tools/h5recover/testh5recover.sh" ;;
"tools/lib/Makefile") CONFIG_FILES="$CONFIG_FILES tools/lib/Makefile" ;;
"tools/misc/Makefile") CONFIG_FILES="$CONFIG_FILES tools/misc/Makefile" ;;
"tools/misc/h5cc") CONFIG_FILES="$CONFIG_FILES tools/misc/h5cc" ;;
diff --git a/configure.in b/configure.in
index 8aae78b..fda24a7 100644
--- a/configure.in
+++ b/configure.in
@@ -3720,6 +3720,8 @@ AC_CONFIG_FILES([src/libhdf5.settings
tools/h5repack/h5repack.sh
tools/h5ls/Makefile
tools/h5copy/Makefile
+ tools/h5recover/Makefile
+ tools/h5recover/testh5recover.sh
tools/lib/Makefile
tools/misc/Makefile
tools/misc/h5cc
diff --git a/tools/Makefile.am b/tools/Makefile.am
index d52942b..afe48dc 100644
--- a/tools/Makefile.am
+++ b/tools/Makefile.am
@@ -22,6 +22,6 @@
include $(top_srcdir)/config/commence.am
# All subdirectories
-SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy h5stat
+SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy h5stat h5recover
include $(top_srcdir)/config/conclude.am
diff --git a/tools/Makefile.in b/tools/Makefile.in
index eabfca2..674b0af 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -304,7 +304,7 @@ TRACE = perl $(top_srcdir)/bin/trace
CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# All subdirectories
-SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy h5stat
+SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy h5stat h5recover
# Automake needs to be taught how to build lib, progs, and tests targets.
# These will be filled in automatically for the most part (e.g.,
diff --git a/tools/h5recover/Makefile.am b/tools/h5recover/Makefile.am
new file mode 100644
index 0000000..9be9908
--- /dev/null
+++ b/tools/h5recover/Makefile.am
@@ -0,0 +1,48 @@
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 tools/h5recover Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include files in /src directory and /tools/lib directory
+INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_PROG=trecover
+TEST_SCRIPT=testh5recover.sh
+
+check_PROGRAMS=$(TEST_PROG)
+check_SCRIPTS=$(TEST_SCRIPT)
+SCRIPT_DEPEND=trecover$(EXEEXT)
+
+# Source files for the program
+trecover_SOURCES=trecover_main.c trecover_writer.c trecover_crasher.c
+
+# Our main target, the h5recover tool.
+# h5recover source is not ready yet.
+bin_PROGRAMS=#h5recover
+
+# All the programs depend on the hdf5 and h5tools libraries
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+# Temporary files. *.h5 are generated by h5recover.
+CHECK_CLEANFILES+=*.h5
+DISTCLEANFILES=testh5recover.sh
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5recover/Makefile.in b/tools/h5recover/Makefile.in
new file mode 100644
index 0000000..f1c37cd
--- /dev/null
+++ b/tools/h5recover/Makefile.in
@@ -0,0 +1,856 @@
+# Makefile.in generated by automake 1.10 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# HDF5 tools/h5recover Makefile(.in)
+#
+
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
+ $(srcdir)/testh5recover.sh.in $(top_srcdir)/config/commence.am \
+ $(top_srcdir)/config/conclude.am
+check_PROGRAMS = $(am__EXEEXT_1)
+bin_PROGRAMS =
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS)
+subdir = tools/h5recover
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+ $(ACLOCAL_M4)
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES = testh5recover.sh
+am__installdirs = "$(DESTDIR)$(bindir)"
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+am__EXEEXT_1 = trecover$(EXEEXT)
+PROGRAMS = $(bin_PROGRAMS)
+am_trecover_OBJECTS = trecover_main.$(OBJEXT) \
+ trecover_writer.$(OBJEXT) trecover_crasher.$(OBJEXT)
+trecover_OBJECTS = $(am_trecover_OBJECTS)
+trecover_LDADD = $(LDADD)
+trecover_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
+DEFAULT_INCLUDES = -I. -I$(top_builddir)/src@am__isrc@
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+ $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+ $(LDFLAGS) -o $@
+SOURCES = $(trecover_SOURCES)
+DIST_SOURCES = $(trecover_SOURCES)
+ETAGS = etags
+CTAGS = ctags
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AM_MAKEFLAGS = @AM_MAKEFLAGS@
+AR = @AR@
+
+# Set the paths for AFS installs of autotools for Linux machines
+# Ideally, these tools should never be needed during the build.
+AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
+AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
+AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AWK = @AWK@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CC_VERSION = @CC_VERSION@
+
+# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
+# but which shouldn't be exported to h5cc for building other programs.
+CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CLEARFILEBUF = @CLEARFILEBUF@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CYGPATH_W = @CYGPATH_W@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
+ECHO_T = @ECHO_T@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+F77 = @F77@
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+F9XMODFLAG = @F9XMODFLAG@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS_f90 = @FCFLAGS_f90@
+FCLIBS = @FCLIBS@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GREP = @GREP@
+H5_CFLAGS = @H5_CFLAGS@
+H5_CPPFLAGS = @H5_CPPFLAGS@
+H5_CXXFLAGS = @H5_CXXFLAGS@
+H5_FCFLAGS = @H5_FCFLAGS@
+H5_LONE_COLON = @H5_LONE_COLON@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL = @INSTALL@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LDFLAGS = @LDFLAGS@
+LIBOBJS = @LIBOBJS@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MAINT = @MAINT@
+MAKEINFO = @MAKEINFO@
+MKDIR_P = @MKDIR_P@
+MPE = @MPE@
+MPI_GET_SIZE = @MPI_GET_SIZE@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+OBJEXT = @OBJEXT@
+PACKAGE = @PACKAGE@
+PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
+PACKAGE_NAME = @PACKAGE_NAME@
+PACKAGE_STRING = @PACKAGE_STRING@
+PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_VERSION = @PACKAGE_VERSION@
+PARALLEL = @PARALLEL@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SET_MAKE = @SET_MAKE@
+
+# Hardcode SHELL to be /bin/sh. Most machines have this shell, and
+# on at least one machine configure fails to detect its existence (janus).
+# Also, when HDF5 is configured on one machine but run on another,
+# configure's automatic SHELL detection may not work on the build machine.
+SHELL = /bin/sh
+SIZE_T = @SIZE_T@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTPARALLEL = @TESTPARALLEL@
+TIME = @TIME@
+TR = @TR@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+USINGMEMCHECKER = @USINGMEMCHECKER@
+VERSION = @VERSION@
+abs_builddir = @abs_builddir@
+abs_srcdir = @abs_srcdir@
+abs_top_builddir = @abs_top_builddir@
+abs_top_srcdir = @abs_top_srcdir@
+ac_ct_CC = @ac_ct_CC@
+ac_ct_CXX = @ac_ct_CXX@
+ac_ct_F77 = @ac_ct_F77@
+ac_ct_FC = @ac_ct_FC@
+am__include = @am__include@
+am__leading_dot = @am__leading_dot@
+am__quote = @am__quote@
+am__tar = @am__tar@
+am__untar = @am__untar@
+bindir = @bindir@
+build = @build@
+build_alias = @build_alias@
+build_cpu = @build_cpu@
+build_os = @build_os@
+build_vendor = @build_vendor@
+builddir = @builddir@
+datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = $(exec_prefix)/doc
+dvidir = @dvidir@
+exec_prefix = @exec_prefix@
+host = @host@
+host_alias = @host_alias@
+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+htmldir = @htmldir@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+infodir = @infodir@
+install_sh = @install_sh@
+libdir = @libdir@
+libexecdir = @libexecdir@
+localedir = @localedir@
+localstatedir = @localstatedir@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+psdir = @psdir@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
+srcdir = @srcdir@
+sysconfdir = @sysconfdir@
+target_alias = @target_alias@
+top_builddir = @top_builddir@
+top_srcdir = @top_srcdir@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Some machines need a command to run executables; this is that command
+# so that our tests will run.
+# We use RUNTESTS instead of RUNSERIAL directly because it may be that
+# some tests need to be run with a different command. Older versions
+# of the makefiles used the command
+# $(LIBTOOL) --mode=execute
+# in some directories, for instance.
+RUNTESTS = $(RUNSERIAL)
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
+
+# Scripts used to build examples
+# If only shared libraries have been installed, have h5cc build examples with
+# shared libraries instead of static libraries
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
+
+# The trace script; this is used on source files from the C library to
+# insert tracing macros.
+TRACE = perl $(top_srcdir)/bin/trace
+
+# .chkexe files are used to mark tests that have run successfully.
+# .chklog files are output from those tests.
+# *.clog are from the MPE option.
+
+# Temporary files. *.h5 are generated by h5recover.
+CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5
+
+# Include files in /src directory and /tools/lib directory
+INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_PROG = trecover
+TEST_SCRIPT = testh5recover.sh
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+# Source files for the program
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+
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+DISTCLEANFILES = testh5recover.sh
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+ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
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+ $(EXTRA_PROG)
+
+TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
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+ @for dep in $?; do \
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+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
+ && exit 0; \
+ exit 1;; \
+ esac; \
+ done; \
+ echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5recover/Makefile'; \
+ cd $(top_srcdir) && \
+ $(AUTOMAKE) --foreign tools/h5recover/Makefile
+.PRECIOUS: Makefile
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+ @case '$?' in \
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+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+ *) \
+ echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
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+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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+ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+install-binPROGRAMS: $(bin_PROGRAMS)
+ @$(NORMAL_INSTALL)
+ test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
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+ if test -f $$p \
+ || test -f $$p1 \
+ ; then \
+ f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+ echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+ $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
+ else :; fi; \
+ done
+
+uninstall-binPROGRAMS:
+ @$(NORMAL_UNINSTALL)
+ @list='$(bin_PROGRAMS)'; for p in $$list; do \
+ f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+ echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+ rm -f "$(DESTDIR)$(bindir)/$$f"; \
+ done
+
+clean-binPROGRAMS:
+ @list='$(bin_PROGRAMS)'; for p in $$list; do \
+ f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+ echo " rm -f $$p $$f"; \
+ rm -f $$p $$f ; \
+ done
+
+clean-checkPROGRAMS:
+ @list='$(check_PROGRAMS)'; for p in $$list; do \
+ f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+ echo " rm -f $$p $$f"; \
+ rm -f $$p $$f ; \
+ done
+trecover$(EXEEXT): $(trecover_OBJECTS) $(trecover_DEPENDENCIES)
+ @rm -f trecover$(EXEEXT)
+ $(LINK) $(trecover_OBJECTS) $(trecover_LDADD) $(LIBS)
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+ fi; \
+ done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5recover/testh5recover.sh.in b/tools/h5recover/testh5recover.sh.in
new file mode 100644
index 0000000..27cf1d1
--- /dev/null
+++ b/tools/h5recover/testh5recover.sh.in
@@ -0,0 +1,124 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# Tests for the h5recover tool
+
+# Determine which filters are available
+USE_FILTER_SZIP="@USE_FILTER_SZIP@"
+USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
+USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
+USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
+USE_FILTER_NBIT="@USE_FILTER_NBIT@"
+USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
+
+TOOL=h5recover # The tool name
+TOOL_BIN=`pwd`/$TOOL # The path of the tool binary
+TESTDIR=`pwd`/../testfiles
+
+
+CMP='cmp -s'
+DIFF='diff -c'
+
+nerrors=0
+verbose=yes
+
+# The build (current) directory might be different than the source directory.
+if test -z "$srcdir"; then
+ srcdir=.
+fi
+
+#test -d $TESTDIR || mkdir $TESTDIR
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Testing".
+#
+TESTING() {
+ SPACES=" "
+ echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
+}
+
+# Run a test and print PASS or *FAIL*. If a test fails then increment
+# the `nerrors' global variable and (if $verbose is set) display the
+# difference between the actual output and the expected output. The
+# expected output is given as the first argument to this function and
+# the actual output file is calculated by replacing the `.ddl' with
+# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
+# non-zero value.
+#
+TOOLTEST() {
+
+ expect="$srcdir/../testfiles/$1"
+ actual="../testfiles/`basename $1 .ddl`.out"
+ actual_err="../testfiles/`basename $1 .ddl`.err"
+ shift
+
+ # Run test.
+ TESTING $TOOL $@
+ (
+ echo "#############################"
+ echo "Expected output for '$TOOL $@'"
+ echo "#############################"
+ cd $srcdir/../testfiles
+ $RUNSERIAL $TOOL_BIN $@
+ ) >$actual 2>$actual_err
+ cat $actual_err >> $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err
+ fi
+
+}
+
+
+
+# Print a "SKIP" message
+SKIP() {
+ TESTING $TOOL $@
+ echo " -SKIP-"
+}
+
+
+
+##############################################################################
+##############################################################################
+### T H E T E S T S ###
+##############################################################################
+##############################################################################
+
+SKIP dummy testh5recover
+
+# test for displaying groups
+#TOOLTEST tgroup-1.ddl tgroup.h5
+
+
+if test $nerrors -eq 0 ; then
+ echo "All $TOOL tests passed."
+fi
+
+exit $nerrors
+
diff --git a/tools/h5recover/trecover.h b/tools/h5recover/trecover.h
new file mode 100644
index 0000000..79635dc
--- /dev/null
+++ b/tools/h5recover/trecover.h
@@ -0,0 +1,30 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+
+/*
+ * Header file for the trecover test program.
+ */
+
+/* Macro definitions */
+/* Crash modes */
+#define SyncCrash 0
+#define AsyncCrash 1
+#define CRASH crasher(SyncCrash, 0)
+
+
+/* protocol definitions */
+void crasher(int crash_mode, int crash_param);
+void writer(void);
diff --git a/tools/h5recover/trecover_crasher.c b/tools/h5recover/trecover_crasher.c
new file mode 100644
index 0000000..dd79331
--- /dev/null
+++ b/tools/h5recover/trecover_crasher.c
@@ -0,0 +1,42 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * crasher HDF5 API module of the trecover test program.
+ */
+
+#include "trecover.h"
+
+/* Crasher
+ * Two crash modes:
+ * SyncCrash: will now at once;
+ * AsyncCrash: schedule a crash to occur in the future in the asynchronous
+ * fashion.
+ * Crash_param: used by AsyncCrash mode and ignored by SyncCrash mode.
+ */
+void
+crasher(int crash_mode, int crash_param)
+{
+ switch (crash_mode) {
+ case SyncCrash:
+ _exit(0);
+ break;
+ case AsyncCrash:
+ printf("AsyncCrash not implemented yet\n");
+ break;
+ otherwise:
+ print("Unknown Crash Mode (%d)\n", crash_mode);
+ break;
+ }
+}
diff --git a/tools/h5recover/trecover_main.c b/tools/h5recover/trecover_main.c
new file mode 100644
index 0000000..bb19159
--- /dev/null
+++ b/tools/h5recover/trecover_main.c
@@ -0,0 +1,28 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example writes data to the HDF5 file.
+ * It creates three datasets, first one as a regular dataset, second one
+ * uses gzip compression if supported, and the third one use szip compression
+ * if supported.
+ */
+
+#include "trecover.h"
+
+int
+main (void)
+{
+ writer();
+}
diff --git a/tools/h5recover/trecover_writer.c b/tools/h5recover/trecover_writer.c
new file mode 100644
index 0000000..d7b3bb2
--- /dev/null
+++ b/tools/h5recover/trecover_writer.c
@@ -0,0 +1,157 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * writer HDF5 API module of the trecover test program.
+ */
+
+#include "trecover.h"
+
+#define H5FILE_NAME "SDS.h5"
+#define DATASETNAME "IntArray"
+#define ZDATASETNAME "IntArrayZCompressed"
+#define SZDATASETNAME "IntArraySZCompressed"
+/* Dataset dimensions. Intentional small for easier dumping of data. */
+#define RANK 2
+#define NX 8000 /* dataset dimensions */
+#define NY 16
+#define ChunkX 8 /* Dataset chunk sizes */
+#define ChunkY 8
+
+void
+writer(void)
+{
+ hid_t file, dataset; /* file and dataset handles */
+ hid_t datatype, dataspace, plist; /* handles */
+ hsize_t dims[RANK]={NX,NY}; /* dataset dimensions */
+ hsize_t dimschunk[RANK]={ChunkX,ChunkY}; /* dataset chunk dimensions */
+ herr_t status;
+ int data[NX][NY]; /* data to write */
+ int i, j;
+
+ /*
+ * Data and output buffer initialization.
+ */
+ for (i = 0; i < NX; i++) {
+ for (j = 0; j < NY; j++)
+ data[i][j] = i*100 + j;
+ }
+
+ /*
+ * Create a new file using H5F_ACC_TRUNC access,
+ * default file creation properties, and default file
+ * access properties.
+ */
+ file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Describe the size of the array and create the data space for fixed
+ * size dataset.
+ */
+ dataspace = H5Screate_simple(RANK, dims, NULL);
+
+ /*
+ * Define datatype for the data in the file.
+ * We will store little endian INT numbers.
+ */
+ datatype = H5Tcopy(H5T_NATIVE_INT);
+ status = H5Tset_order(datatype, H5T_ORDER_LE);
+
+ /* =============================================================
+ * Create a new dataset within the file using defined dataspace and
+ * datatype and default dataset creation properties.
+ * =============================================================
+ */
+ dataset = H5Dcreate(file, DATASETNAME, datatype, dataspace,
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Write the data to the dataset using default transfer properties.
+ */
+ status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, data);
+ CRASH;
+ /*
+ * Close/release resources.
+ */
+ H5Dclose(dataset);
+ printf("%s created.\n", DATASETNAME);
+
+#ifdef H5_HAVE_FILTER_DEFLATE
+ /* =============================================================
+ * Create similar dataset but using Zlib compression.
+ * Dataset creation property list is modified to use
+ * GZIP compression with the compression effort set to 6.
+ * Note that compression can be used only when dataset is chunked.
+ * =============================================================
+ */
+ plist = H5Pcreate(H5P_DATASET_CREATE);
+ H5Pset_chunk(plist, RANK, dimschunk);
+ H5Pset_deflate( plist, 6);
+ dataset = H5Dcreate(file, ZDATASETNAME, H5T_NATIVE_INT,
+ dataspace, plist, H5P_DEFAULT, H5P_DEFAULT);
+ status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, data);
+
+ /*
+ * Close/release resources.
+ */
+ H5Pclose(plist);
+ H5Dclose(dataset);
+ printf("%s created.\n", ZDATASETNAME);
+#else
+ printf("%s is not created because of no GZIP (deflate) support.\n",
+ ZDATASETNAME);
+#endif
+
+#ifdef H5_HAVE_FILTER_SZIP
+ /* =============================================================
+ * Create similar dataset but using SZLIB compression.
+ * Dataset creation property list is modified to use
+ * SZIP compression with 8 pixels_per_block.
+ * Note that compression can be used only when dataset is chunked.
+ * =============================================================
+ */
+ plist = H5Pcreate(H5P_DATASET_CREATE);
+ H5Pset_chunk(plist, RANK, dimschunk);
+ H5Pset_szip (plist, H5_SZIP_NN_OPTION_MASK, 8);
+ dataset = H5Dcreate(file, SZDATASETNAME, H5T_NATIVE_INT,
+ dataspace, plist, H5P_DEFAULT, H5P_DEFAULT);
+ status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, data);
+
+ /*
+ * Close/release resources.
+ */
+ H5Pclose(plist);
+ H5Dclose(dataset);
+ printf("%s created.\n", SZDATASETNAME);
+#else
+ printf("%s is not created because of no SZIP encode support.\n",
+ SZDATASETNAME);
+#endif
+
+ /*
+ * Close/release resources.
+ */
+ H5Sclose(dataspace);
+ H5Tclose(datatype);
+
+ /* Close the file */
+ H5Fclose(file);
+
+ printf("HDF5 C Sample program ran successfully. File %s generated.\n", H5FILE_NAME);
+
+ return;
+}