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authorQuincey Koziol <koziol@hdfgroup.org>2010-04-10 02:08:32 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2010-04-10 02:08:32 (GMT)
commita56445f5c5e2e8e4a8032b9d9958247c08b51438 (patch)
treec6c8267078ae57d62008fe9649b263380f28160e
parent5359456644af3f4fa07821c58cdb3818e2f515de (diff)
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[svn-r18541] Description:
Bring further into alignment with current state of trunk. Tested on: Mac OS X/32 (10.6.3) w/debug (h5committest not required on this branch)
-rw-r--r--src/H5AC.c15
-rw-r--r--src/H5C.c5
-rw-r--r--src/H5Cpkg.h6
-rw-r--r--src/H5Cprivate.h2
-rw-r--r--src/H5Dint.c2
-rw-r--r--src/H5Doh.c2
-rw-r--r--src/H5FD.c122
-rw-r--r--src/H5FL.c2
-rw-r--r--src/H5Ffake.c2
-rw-r--r--src/H5Fsfile.c2
-rw-r--r--src/H5O.c16
-rw-r--r--src/H5Oalloc.c51
-rw-r--r--src/H5Oattribute.c15
-rw-r--r--src/H5Ocache.c52
-rw-r--r--src/H5Ochunk.c7
-rw-r--r--src/H5Opkg.h6
-rw-r--r--src/H5Oprivate.h2
17 files changed, 169 insertions, 140 deletions
diff --git a/src/H5AC.c b/src/H5AC.c
index 236e2ac..7490388 100644
--- a/src/H5AC.c
+++ b/src/H5AC.c
@@ -147,9 +147,8 @@ static herr_t H5AC_check_if_write_permitted(const H5F_t *f,
static herr_t H5AC_broadcast_clean_list(H5AC_t * cache_ptr);
#endif /* JRM */
-static herr_t H5AC_ext_config_2_int_config(
- H5AC_cache_config_t * ext_conf_ptr,
- H5C_auto_size_ctl_t * int_conf_ptr);
+static herr_t H5AC_ext_config_2_int_config(H5AC_cache_config_t * ext_conf_ptr,
+ H5C_auto_size_ctl_t * int_conf_ptr);
#ifdef H5_HAVE_PARALLEL
static herr_t H5AC_log_deleted_entry(H5AC_t * cache_ptr,
@@ -2218,6 +2217,9 @@ H5AC_pin_protected_entry(void *thing)
FUNC_ENTER_NOAPI(H5AC_pin_protected_entry, FAIL)
+ /* Sanity check */
+ HDassert(thing);
+
#if H5AC__TRACE_FILE_ENABLED
/* For the pin protected entry call, only the addr is really necessary
* in the trace file. Also write the result to catch occult errors.
@@ -2692,7 +2694,7 @@ H5AC_unprotect(H5F_t *f, hid_t dxpl_id, const H5AC_class_t *type, haddr_t addr,
}
#endif /* H5AC__TRACE_FILE_ENABLED */
- dirtied = ( ( (flags & H5AC__DIRTIED_FLAG) == H5AC__DIRTIED_FLAG ) ||
+ dirtied = (hbool_t)( ( (flags & H5AC__DIRTIED_FLAG) == H5AC__DIRTIED_FLAG ) ||
( ((H5AC_info_t *)thing)->dirtied ) );
size_changed = ( (flags & H5AC__SIZE_CHANGED_FLAG) ==
@@ -2701,9 +2703,8 @@ H5AC_unprotect(H5F_t *f, hid_t dxpl_id, const H5AC_class_t *type, haddr_t addr,
#ifdef H5_HAVE_PARALLEL
if ( ( dirtied ) && ( ((H5AC_info_t *)thing)->is_dirty == FALSE ) &&
( NULL != (aux_ptr = f->shared->cache->aux_ptr) ) ) {
-
- if(H5AC_log_dirtied_entry(thing, addr, size_changed, new_size) < 0)
- HGOTO_ERROR(H5E_CACHE, H5E_CANTUNPROTECT, FAIL, "can't log entry")
+ if(H5AC_log_dirtied_entry((H5AC_info_t *)thing, addr, size_changed, new_size) < 0)
+ HGOTO_ERROR(H5E_CACHE, H5E_CANTUNPROTECT, FAIL, "can't log dirtied entry")
}
if ( ( (flags & H5C__DELETED_FLAG) != 0 ) &&
diff --git a/src/H5C.c b/src/H5C.c
index 43fdf27..2203878 100644
--- a/src/H5C.c
+++ b/src/H5C.c
@@ -709,8 +709,7 @@ done:
H5SL_close(cache_ptr->slist_ptr);
cache_ptr->magic = 0;
- H5FL_FREE(H5C_t, cache_ptr);
- cache_ptr = NULL;
+ cache_ptr = H5FL_FREE(H5C_t, cache_ptr);
} /* end if */
@@ -1052,7 +1051,7 @@ H5C_dest_empty(H5C_t * cache_ptr)
cache_ptr->magic = 0;
- H5FL_FREE(H5C_t, cache_ptr);
+ cache_ptr = H5FL_FREE(H5C_t, cache_ptr);
done:
FUNC_LEAVE_NOAPI(ret_value)
diff --git a/src/H5Cpkg.h b/src/H5Cpkg.h
index 3925fdd..ee0b108 100644
--- a/src/H5Cpkg.h
+++ b/src/H5Cpkg.h
@@ -4557,9 +4557,9 @@ if ( ( (cache_ptr) == NULL ) || \
if ( (entry_ptr)->is_pinned ) { \
\
H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->pel_head_ptr, \
- (cache_ptr)->pel_tail_ptr, \
- (cache_ptr)->pel_len, \
- (cache_ptr)->pel_size, (fail_val)) \
+ (cache_ptr)->pel_tail_ptr, \
+ (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
\
} else if ( (entry_ptr)->last_trans != 0 ) { \
\
diff --git a/src/H5Cprivate.h b/src/H5Cprivate.h
index 3033a4f..5510cc0 100644
--- a/src/H5Cprivate.h
+++ b/src/H5Cprivate.h
@@ -83,7 +83,7 @@
* want them on for testing on occasion, but in general they should be
* off.
*/
-#define H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS 0 /* JRM */
+#define H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS 0
#endif /* H5_HAVE_PARALLEL */
diff --git a/src/H5Dint.c b/src/H5Dint.c
index 292748b..49a83a2 100644
--- a/src/H5Dint.c
+++ b/src/H5Dint.c
@@ -29,7 +29,7 @@
#include "H5private.h" /* Generic Functions */
#include "H5Dpkg.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
-#include "H5FLprivate.h" /* Free Lists */
+#include "H5FLprivate.h" /* Free Lists */
#include "H5FOprivate.h" /* File objects */
#include "H5HLprivate.h" /* Local heaps */
#include "H5Iprivate.h" /* IDs */
diff --git a/src/H5Doh.c b/src/H5Doh.c
index e99f9ee..0972d17 100644
--- a/src/H5Doh.c
+++ b/src/H5Doh.c
@@ -155,7 +155,7 @@ H5O_dset_free_copy_file_udata(void *_udata)
H5O_msg_free(H5O_PLINE_ID, udata->src_pline);
/* Release space for 'copy file' user data */
- H5FL_FREE(H5D_copy_file_ud_t, udata);
+ udata = H5FL_FREE(H5D_copy_file_ud_t, udata);
FUNC_LEAVE_NOAPI_VOID
} /* end H5O_dset_free_copy_file_udata() */
diff --git a/src/H5FD.c b/src/H5FD.c
index e6f83d4..cec4ae8 100644
--- a/src/H5FD.c
+++ b/src/H5FD.c
@@ -1930,72 +1930,67 @@ H5FD_read(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t siz
/* Check if this information is in the metadata accumulator */
if((file->feature_flags&H5FD_FEAT_ACCUMULATE_METADATA) && type!=H5FD_MEM_DRAW) {
- /* Current read overlaps with metadata accumulator */
- if(H5F_addr_overlap(addr,size,file->accum_loc,file->accum_size)) {
- unsigned char *read_buf=(unsigned char *)buf; /* Pointer to the buffer being read in */
- size_t amount_read; /* Amount to read at a time */
-#ifndef NDEBUG
- hsize_t tempamount_read; /* Amount to read at a time */
-#endif /* NDEBUG */
- hsize_t read_off; /* Offset to read from */
-
- /* Double check that we aren't reading raw data */
- assert(type!=H5FD_MEM_DRAW);
+ /* Current read adjoins or overlaps with metadata accumulator */
+ if(H5F_addr_overlap(addr, size, file->accum_loc, file->accum_size)
+ || ((addr + size) == file->accum_loc)
+ || (file->accum_loc + file->accum_size) == addr) {
+ size_t amount_before; /* Amount to read before current accumulator */
+ haddr_t new_addr; /* New address of the accumulator buffer */
+ size_t new_size; /* New size of the accumulator buffer */
+
+ /* Compute new values for accumulator */
+ new_addr = MIN(addr, file->accum_loc);
+ new_size = (size_t)(MAX((addr + size), (file->accum_loc + file->accum_size))
+ - new_addr);
+
+ /* Check if we need more buffer space */
+ if(new_size > file->accum_buf_size) {
+ /* Adjust the buffer size, by doubling it */
+ file->accum_buf_size = MAX(file->accum_buf_size * 2, new_size);
+
+ /* Reallocate the metadata accumulator buffer */
+ if(NULL == (file->meta_accum = H5FL_BLK_REALLOC(meta_accum, file->meta_accum, file->accum_buf_size)))
+ HGOTO_ERROR(H5E_VFL, H5E_CANTALLOC, FAIL, "unable to allocate metadata accumulator buffer")
+#ifdef H5_CLEAR_MEMORY
+HDmemset(file->meta_accum + file->accum_size, 0, (file->accum_buf_size - file->accum_size));
+#endif /* H5_CLEAR_MEMORY */
+ } /* end if */
/* Read the part before the metadata accumulator */
- if(addr<file->accum_loc) {
+ if(addr < file->accum_loc) {
/* Set the amount to read */
- H5_ASSIGN_OVERFLOW(amount_read,file->accum_loc-addr,hsize_t,size_t);
+ H5_ASSIGN_OVERFLOW(amount_before, (file->accum_loc - addr), hsize_t, size_t);
+
+ /* Make room for the metadata to read in */
+ HDmemmove(file->meta_accum + amount_before, file->meta_accum, file->accum_size);
/* Dispatch to driver */
- if((file->cls->read)(file, type, dxpl_id, addr, amount_read, read_buf) < 0)
+ if((file->cls->read)(file, type, dxpl_id, addr, amount_before, file->meta_accum) < 0)
HGOTO_ERROR(H5E_VFL, H5E_READERROR, FAIL, "driver read request failed")
-
- /* Adjust the buffer, address & size */
- read_buf+=amount_read;
- addr+=amount_read;
- size-=amount_read;
- } /* end if */
-
- /* Copy the part overlapping the metadata accumulator */
- if(size>0 && (addr>=file->accum_loc && addr<(file->accum_loc+file->accum_size))) {
- /* Set the offset to "read" from */
- read_off=addr-file->accum_loc;
-
- /* Set the amount to "read" */
-#ifndef NDEBUG
- tempamount_read = file->accum_size-read_off;
- H5_CHECK_OVERFLOW(tempamount_read,hsize_t,size_t);
- amount_read = MIN(size, (size_t)tempamount_read);
-#else /* NDEBUG */
- amount_read = MIN(size, (size_t)(file->accum_size-read_off));
-#endif /* NDEBUG */
-
- /* Copy the data out of the buffer */
- HDmemcpy(read_buf,file->meta_accum+read_off,amount_read);
-
- /* Adjust the buffer, address & size */
- read_buf+=amount_read;
- addr+=amount_read;
- size-=amount_read;
} /* end if */
+ else
+ amount_before = 0;
/* Read the part after the metadata accumulator */
- if(size>0 && addr>=(file->accum_loc+file->accum_size)) {
+ if((addr + size) > (file->accum_loc + file->accum_size)) {
+ size_t amount_after; /* Amount to read at a time */
+
+ /* Set the amount to read */
+ H5_ASSIGN_OVERFLOW(amount_after, ((addr + size) - (file->accum_loc + file->accum_size)), hsize_t, size_t);
+
/* Dispatch to driver */
- if((file->cls->read)(file, type, dxpl_id, addr, size, read_buf) < 0)
+ if((file->cls->read)(file, type, dxpl_id, (file->accum_loc + file->accum_size), amount_after, (file->meta_accum + file->accum_size + amount_before)) < 0)
HGOTO_ERROR(H5E_VFL, H5E_READERROR, FAIL, "driver read request failed")
-
- /* Adjust the buffer, address & size */
- read_buf+=size;
- addr+=size;
- size-=size;
} /* end if */
- /* Make certain we've read it all */
- assert(size==0);
+ /* Copy the data out of the buffer */
+ HDmemcpy(buf, file->meta_accum + (addr - new_addr), size);
+
+ /* Adjust the accumulator address & size */
+ file->accum_loc = new_addr;
+ file->accum_size = new_size;
} /* end if */
- /* Current read doesn't overlap with metadata accumulator, read it into accumulator */
+ /* Current read doesn't adjoin or overlap with metadata accumulator, read it into accumulator */
else {
/* Only update the metadata accumulator if it is not dirty or if
* we are allowed to write the accumulator out during reads (when
@@ -2288,8 +2283,29 @@ HDmemset(file->meta_accum + file->accum_size, 0, (file->accum_buf_size - file->a
/* Mark it as written to */
file->accum_dirty=TRUE;
} /* end if */
+ /* New metadata overlaps both ends of the current accumulator */
else {
- assert(0 && "New metadata overlapped both beginning and end of existing metadata accumulator!");
+ /* Check if we need more buffer space */
+ if(size>file->accum_buf_size) {
+ /* Adjust the buffer size, by doubling it */
+ file->accum_buf_size = MAX(file->accum_buf_size * 2, size);
+
+ /* Reallocate the metadata accumulator buffer */
+ if(NULL == (file->meta_accum = H5FL_BLK_REALLOC(meta_accum, file->meta_accum, file->accum_buf_size)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to allocate metadata accumulator buffer")
+#ifdef H5_CLEAR_MEMORY
+HDmemset(file->meta_accum + size, 0, (file->accum_buf_size - size));
+#endif /* H5_CLEAR_MEMORY */
+ } /* end if */
+
+ /* Copy the new metadata to the buffer */
+ HDmemcpy(file->meta_accum, buf, size);
+
+ /* Set the new size & location of the metadata accumulator */
+ file->accum_size = size;
+
+ /* Mark it as written to */
+ file->accum_dirty = TRUE;
} /* end else */
} /* end if */
/* New piece of metadata doesn't adjoin or overlap the existing accumulator */
diff --git a/src/H5FL.c b/src/H5FL.c
index ee62f94..7068630 100644
--- a/src/H5FL.c
+++ b/src/H5FL.c
@@ -2133,7 +2133,7 @@ H5FL_fac_term(H5FL_fac_head_t *factory)
H5FL_blk_unlink(&(factory->queue));
/* Free factory info */
- H5FL_FREE(H5FL_fac_head_t,factory);
+ factory = H5FL_FREE(H5FL_fac_head_t, factory);
done:
FUNC_LEAVE_NOAPI(ret_value)
diff --git a/src/H5Ffake.c b/src/H5Ffake.c
index 42a33e0..950eeec 100644
--- a/src/H5Ffake.c
+++ b/src/H5Ffake.c
@@ -121,7 +121,7 @@ H5F_fake_free(H5F_t *f)
/* Destroy shared file struct */
if(f->shared)
f->shared = H5FL_FREE(H5F_file_t, f->shared);
- H5FL_FREE(H5F_t, f);
+ f = H5FL_FREE(H5F_t, f);
} /* end if */
FUNC_LEAVE_NOAPI(SUCCEED)
diff --git a/src/H5Fsfile.c b/src/H5Fsfile.c
index 354b307..8144986 100644
--- a/src/H5Fsfile.c
+++ b/src/H5Fsfile.c
@@ -219,7 +219,7 @@ H5F_sfile_remove(H5F_file_t *shared)
/* Release the shared file node struct */
/* (the shared file info itself is freed elsewhere) */
- H5FL_FREE(H5F_sfile_node_t, curr);
+ curr = H5FL_FREE(H5F_sfile_node_t, curr);
done:
FUNC_LEAVE_NOAPI(ret_value)
diff --git a/src/H5O.c b/src/H5O.c
index 01abfa3..3a971a7 100644
--- a/src/H5O.c
+++ b/src/H5O.c
@@ -1082,7 +1082,7 @@ H5O_create(H5F_t *f, hid_t dxpl_id, size_t size_hint, hid_t ocpl_id,
size_hint = H5O_ALIGN_F(f, MAX(H5O_MIN_SIZE, size_hint));
/* Get the property list */
- if(NULL == (oc_plist = H5I_object(ocpl_id)))
+ if(NULL == (oc_plist = (H5P_genplist_t *)H5I_object(ocpl_id)))
HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a property list")
/* Get any object header status flags set by properties */
@@ -1138,7 +1138,7 @@ H5O_create(H5F_t *f, hid_t dxpl_id, size_t size_hint, hid_t ocpl_id,
oh->flags |= H5O_HDR_ATTR_STORE_PHASE_CHANGE;
/* Determine correct value for chunk #0 size bits */
- if(size_hint > 4294967295)
+ if(size_hint > 4294967295UL)
oh->flags |= H5O_HDR_CHUNK0_8;
else if(size_hint > 65535)
oh->flags |= H5O_HDR_CHUNK0_4;
@@ -1152,7 +1152,7 @@ H5O_create(H5F_t *f, hid_t dxpl_id, size_t size_hint, hid_t ocpl_id,
/* Compute total size of initial object header */
/* (i.e. object header prefix and first chunk) */
- oh_size = H5O_SIZEOF_HDR(oh) + size_hint;
+ oh_size = (size_t)H5O_SIZEOF_HDR(oh) + size_hint;
/* Allocate disk space for header and first chunk */
if(HADDR_UNDEF == (oh_addr = H5MF_alloc(f, H5FD_MEM_OHDR, dxpl_id, (hsize_t)oh_size)))
@@ -1522,7 +1522,7 @@ H5O_link(const H5O_loc_t *loc, int adjust, hid_t dxpl_id)
} /* end if */
/* Set return value */
- ret_value = oh->nlink;
+ ret_value = (int)oh->nlink;
done:
if(oh && H5O_unpin(oh) < 0)
@@ -1637,9 +1637,9 @@ H5O_protect(const H5O_loc_t *loc, hid_t dxpl_id, H5AC_protect_t prot)
/* Release any continuation messages built up */
if(cont_msg_info.msgs)
- H5FL_SEQ_FREE(H5O_cont_t, cont_msg_info.msgs);
+ cont_msg_info.msgs = (H5O_cont_t *)H5FL_SEQ_FREE(H5O_cont_t, cont_msg_info.msgs);
- /* Pass the back out some of the chunk's user data */
+ /* Pass back out some of the chunk's user data */
udata.common.merged_null_msgs = chk_udata.common.merged_null_msgs;
udata.common.mesgs_modified = chk_udata.common.mesgs_modified;
} /* end if */
@@ -1674,7 +1674,7 @@ H5O_protect(const H5O_loc_t *loc, hid_t dxpl_id, H5AC_protect_t prot)
if(H5AC_get_entry_status(loc->file, loc->addr, &oh_status) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to check metadata cache status for object header")
- /* Make certain that object header is dirty */
+ /* Make certain that object header is not dirty */
HDassert(!(oh_status & H5AC_ES__IS_DIRTY));
} /* end else */
#endif /* NDEBUG */
@@ -2901,7 +2901,7 @@ H5O_free_visit_visited(void *item, void UNUSED *key, void UNUSED *operator_data/
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_free_visit_visited)
- H5FL_FREE(H5_obj_t, item);
+ item = H5FL_FREE(H5_obj_t, item);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_free_visit_visited() */
diff --git a/src/H5Oalloc.c b/src/H5Oalloc.c
index 202c190..45ed422 100644
--- a/src/H5Oalloc.c
+++ b/src/H5Oalloc.c
@@ -167,7 +167,7 @@ H5O_add_gap(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned chunkno, unsigned idx,
/* Check if we need to extend message table to hold the new null message */
if(oh->nmesgs >= oh->alloc_nmesgs)
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
/* Increment new gap size */
oh->chunk[chunkno].gap += new_gap_size;
@@ -369,7 +369,7 @@ H5O_alloc_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned null_idx,
/* Add the gap to the chunk */
if(H5O_add_gap(f, dxpl_id, oh, alloc_msg->chunkno, null_idx, alloc_msg->raw + alloc_msg->raw_size, gap_size) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't insert gap in chunk")
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "can't insert gap in chunk")
} /* end if */
else {
H5O_chunk_proxy_t *null_chk_proxy; /* Chunk that message is in */
@@ -379,7 +379,7 @@ H5O_alloc_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned null_idx,
/* Check if we need to extend message table to hold the new null message */
if(oh->nmesgs >= oh->alloc_nmesgs) {
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
- HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
+ HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
/* "Retarget" 'alloc_msg' pointer into newly re-allocated array of messages */
alloc_msg = &oh->mesg[null_idx];
@@ -387,7 +387,7 @@ H5O_alloc_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned null_idx,
/* Protect chunk */
if(NULL == (null_chk_proxy = H5O_chunk_protect(f, dxpl_id, oh, alloc_msg->chunkno)))
- HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, UFAIL, "unable to load object header chunk")
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, FAIL, "unable to load object header chunk")
/* Create new null message, with the tail of the previous null message */
null_msg = &(oh->mesg[oh->nmesgs++]);
@@ -402,7 +402,7 @@ H5O_alloc_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned null_idx,
/* Release chunk, marking it dirty */
if(H5O_chunk_unprotect(f, dxpl_id, oh, null_chk_proxy, H5AC__DIRTIED_FLAG) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, UFAIL, "unable to unprotect object header chunk")
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, FAIL, "unable to unprotect object header chunk")
/* Check for gap in new null message's chunk */
if(oh->chunk[null_msg->chunkno].gap > 0) {
@@ -412,7 +412,7 @@ H5O_alloc_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned null_idx,
if(H5O_eliminate_gap(f, dxpl_id, oh, null_msg,
((oh->chunk[null_chunkno].image + oh->chunk[null_chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[null_chunkno].gap)),
oh->chunk[null_chunkno].gap) < 0)
- HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, UFAIL, "can't eliminate gap in chunk")
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, FAIL, "can't eliminate gap in chunk")
} /* end if */
/* Set the size of the new "real" message */
@@ -422,7 +422,7 @@ H5O_alloc_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned null_idx,
/* Protect chunk */
if(NULL == (chk_proxy = H5O_chunk_protect(f, dxpl_id, oh, alloc_msg->chunkno)))
- HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, UFAIL, "unable to load object header chunk")
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, FAIL, "unable to load object header chunk")
/* Initialize the new message */
alloc_msg->type = new_type;
@@ -435,7 +435,7 @@ H5O_alloc_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned null_idx,
done:
/* Release chunk */
if(chk_proxy && H5O_chunk_unprotect(f, dxpl_id, oh, chk_proxy, chk_flags) < 0)
- HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, UFAIL, "unable to unprotect object header chunk")
+ HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, FAIL, "unable to unprotect object header chunk")
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_null() */
@@ -555,7 +555,7 @@ H5O_alloc_extend_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned chunkno,
== ((oh->chunk[chunkno].image + oh->chunk[chunkno].size) -
(oh->chunk[chunkno].gap + H5O_SIZEOF_CHKSUM_OH(oh))))) {
- extend_msg = u;
+ extend_msg = (int)u;
break;
} /* end if */
} /* end for */
@@ -571,7 +571,10 @@ H5O_alloc_extend_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned chunkno,
/* Check for changing the chunk #0 data size enough to need adjusting the flags */
if(oh->version > H5O_VERSION_1 && chunkno == 0) {
- uint64_t chunk0_size = oh->chunk[0].size - H5O_SIZEOF_HDR(oh); /* Size of chunk 0's data */
+ uint64_t chunk0_size; /* Size of chunk 0's data */
+
+ HDassert(oh->chunk[0].size >= (size_t)H5O_SIZEOF_HDR(oh));
+ chunk0_size = oh->chunk[0].size - (size_t)H5O_SIZEOF_HDR(oh);
/* Check for moving from a 1-byte to a 2-byte size encoding */
if(chunk0_size <= 255 && (chunk0_size + delta) > 255) {
@@ -611,7 +614,7 @@ H5O_alloc_extend_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned chunkno,
/* Adjust object header prefix flags */
if(adjust_size_flags) {
- oh->flags &= ~H5O_HDR_CHUNK0_SIZE;
+ oh->flags &= (uint8_t)~H5O_HDR_CHUNK0_SIZE;
oh->flags |= new_size_flags;
/* Mark object header as dirty in cache */
@@ -632,7 +635,7 @@ H5O_alloc_extend_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned chunkno,
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
/* Set extension message */
- extend_msg = oh->nmesgs++;
+ extend_msg = (int)oh->nmesgs++;
/* Initialize new null message */
oh->mesg[extend_msg].type = H5O_MSG_NULL;
@@ -702,7 +705,7 @@ H5O_alloc_extend_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned chunkno,
chk_flags |= H5AC__SIZE_CHANGED_FLAG;
/* Set return value */
- *msg_idx = extend_msg;
+ *msg_idx = (unsigned)extend_msg;
done:
/* Release chunk */
@@ -795,12 +798,12 @@ H5O_alloc_new_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, size_t size)
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
if(curr_msg->type->id == H5O_NULL_ID) {
if(cont_size == curr_msg->raw_size) {
- found_null = u;
+ found_null = (int)u;
break;
} /* end if */
else if(curr_msg->raw_size > cont_size &&
(found_null < 0 || curr_msg->raw_size < oh->mesg[found_null].raw_size))
- found_null = u;
+ found_null = (int)u;
} /* end if */
else if(curr_msg->type->id == H5O_CONT_ID) {
/* Don't consider continuation messages (for now) */
@@ -841,7 +844,7 @@ H5O_alloc_new_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, size_t size)
if(total_size >= cont_size) {
if(curr_msg->type->id == H5O_ATTR_ID) {
if(found_attr.msgno < 0 || total_size < found_attr.total_size) {
- found_attr.msgno = u;
+ found_attr.msgno = (int)u;
found_attr.gap_size = gap_size;
found_attr.null_size = null_size;
found_attr.total_size = total_size;
@@ -850,7 +853,7 @@ H5O_alloc_new_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, size_t size)
} /* end if */
else {
if(found_other.msgno < 0 || total_size < found_other.total_size) {
- found_other.msgno = u;
+ found_other.msgno = (int)u;
found_other.gap_size = gap_size;
found_other.null_size = null_size;
found_other.total_size = total_size;
@@ -947,7 +950,7 @@ H5O_alloc_new_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, size_t size)
HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, UFAIL, "unable to load object header chunk")
/* Create null message for space that message to copy currently occupies */
- found_null = oh->nmesgs++;
+ found_null = (int)oh->nmesgs++;
null_msg = &(oh->mesg[found_null]);
null_msg->type = H5O_MSG_NULL;
null_msg->native = NULL;
@@ -1013,7 +1016,7 @@ H5O_alloc_new_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh, size_t size)
oh->mesg[idx].dirty = TRUE;
oh->mesg[idx].native = NULL;
oh->mesg[idx].raw = p + H5O_SIZEOF_MSGHDR_OH(oh);
- oh->mesg[idx].raw_size = size - (H5O_SIZEOF_CHKHDR_OH(oh) + H5O_SIZEOF_MSGHDR_OH(oh));
+ oh->mesg[idx].raw_size = size - (size_t)(H5O_SIZEOF_CHKHDR_OH(oh) + H5O_SIZEOF_MSGHDR_OH(oh));
oh->mesg[idx].chunkno = chunkno;
/* Insert the new chunk into the cache */
@@ -1456,7 +1459,7 @@ H5O_move_msgs_forward(H5F_t *f, hid_t dxpl_id, H5O_t *oh)
} while(packed_msg);
/* Set return value */
- ret_value = did_packing;
+ ret_value = (htri_t)did_packing;
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -1527,7 +1530,7 @@ H5O_merge_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh)
/* Check for second message before first message */
else if((curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh)) == (curr_msg2->raw + curr_msg2->raw_size)) {
/* Adjust first message address and extend length to cover second message */
- adj_raw = -(H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size);
+ adj_raw = -((ssize_t)(H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size));
adj_raw_size = H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size;
/* Message has been merged */
@@ -1582,7 +1585,7 @@ H5O_merge_null(H5F_t *f, hid_t dxpl_id, H5O_t *oh)
} while(merged_msg);
/* Set return value */
- ret_value = did_merging;
+ ret_value = (htri_t)did_merging;
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -1684,7 +1687,7 @@ H5O_remove_empty_chunks(H5F_t *f, hid_t dxpl_id, H5O_t *oh)
*/
/* Free memory for chunk image */
- H5FL_BLK_FREE(chunk_image, oh->chunk[null_msg->chunkno].image);
+ oh->chunk[null_msg->chunkno].image = H5FL_BLK_FREE(chunk_image, oh->chunk[null_msg->chunkno].image);
/* Remove chunk from list of chunks */
if(null_msg->chunkno < (oh->nchunks - 1)) {
@@ -1773,7 +1776,7 @@ H5O_remove_empty_chunks(H5F_t *f, hid_t dxpl_id, H5O_t *oh)
} while(deleted_chunk);
/* Set return value */
- ret_value = did_deleting;
+ ret_value = (htri_t)did_deleting;
done:
FUNC_LEAVE_NOAPI(ret_value)
diff --git a/src/H5Oattribute.c b/src/H5Oattribute.c
index cad15ce..0f1cdc6 100644
--- a/src/H5Oattribute.c
+++ b/src/H5Oattribute.c
@@ -687,16 +687,14 @@ htri_t H5O_attr_find_opened_attr(const H5O_loc_t *loc, H5A_t **attr, const char*
HGOTO_ERROR(H5E_ATTR, H5E_BADVALUE, FAIL, "can't get file serial number")
/* Count all opened attributes */
- if((num_open_attr = H5F_get_obj_count(loc->file, H5F_OBJ_ATTR | H5F_OBJ_LOCAL)) < 0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTCOUNT, FAIL, "can't get number of opened attributes")
+ num_open_attr = H5F_get_obj_count(loc->file, H5F_OBJ_ATTR | H5F_OBJ_LOCAL);
/* Find out whether the attribute has been opened */
if(num_open_attr) {
- attr_id_list = (hid_t*)H5MM_malloc(num_open_attr*sizeof(hid_t));
+ attr_id_list = (hid_t *)H5MM_malloc((size_t)num_open_attr * sizeof(hid_t));
/* Retrieve the IDs of all opened attributes */
- if(H5F_get_obj_ids(loc->file, H5F_OBJ_ATTR | H5F_OBJ_LOCAL, num_open_attr, attr_id_list) < 0)
- HGOTO_ERROR(H5E_ATTR, H5E_CANTGET, FAIL, "can't IDs of opened attributes")
+ H5F_get_obj_ids(loc->file, H5F_OBJ_ATTR | H5F_OBJ_LOCAL, num_open_attr, attr_id_list);
for(i=0; i<num_open_attr; i++) {
if(NULL == (*attr = (H5A_t *)H5I_object_verify(attr_id_list[i], H5I_ATTR)))
@@ -1070,7 +1068,7 @@ H5O_attr_rename_mod_cb(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/,
/* Check for shared message */
if(mesg->flags & H5O_MSG_FLAG_SHARED) {
/* Update the shared attribute in the SOHM storage */
- if(H5O_attr_update_shared(udata->f, udata->dxpl_id, oh, mesg->native, NULL) < 0)
+ if(H5O_attr_update_shared(udata->f, udata->dxpl_id, oh, (H5A_t *)mesg->native, NULL) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTUPDATE, H5_ITER_ERROR, "unable to update attribute in shared storage")
} /* end if */
else {
@@ -1755,7 +1753,8 @@ H5O_attr_count_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh)
unsigned u; /* Local index variable */
/* Loop over all messages, counting the attributes */
- for(u = ret_value = 0; u < oh->nmesgs; u++)
+ ret_value = (hsize_t)0;
+ for(u = 0; u < oh->nmesgs; u++)
if(oh->mesg[u].type == H5O_MSG_ATTR)
ret_value++;
} /* end else */
@@ -1862,7 +1861,7 @@ H5O_attr_exists(const H5O_loc_t *loc, const char *name, hid_t dxpl_id)
HGOTO_ERROR(H5E_ATTR, H5E_BADITER, FAIL, "error checking for existence of attribute")
/* Check that we found the attribute */
- ret_value = udata.found;
+ ret_value = (htri_t)udata.found;
} /* end else */
done:
diff --git a/src/H5Ocache.c b/src/H5Ocache.c
index bfd1403..8843557 100644
--- a/src/H5Ocache.c
+++ b/src/H5Ocache.c
@@ -120,7 +120,10 @@ const H5AC_class_t H5AC_OHDR_CHK[1] = {{
/* Declare external the free list for H5O_unknown_t's */
H5FL_EXTERN(H5O_unknown_t);
-/* Declare external the free list for H5O_cont_t sequences */
+/* Declare extern the free list for H5O_chunk_proxy_t's */
+H5FL_EXTERN(H5O_chunk_proxy_t);
+
+/* Declare the free list for H5O_cont_t sequences */
H5FL_SEQ_DEFINE(H5O_cont_t);
@@ -133,8 +136,6 @@ H5FL_SEQ_DEFINE(H5O_cont_t);
/* Local Variables */
/*******************/
-/* Declare extern the free list for H5O_chunk_proxy_t's */
-H5FL_EXTERN(H5O_chunk_proxy_t);
/*-------------------------------------------------------------------------
@@ -203,10 +204,16 @@ H5O_cache_deserialize(haddr_t addr, size_t len, const void *image,
/* Time fields */
if(oh->flags & H5O_HDR_STORE_TIMES) {
- UINT32DECODE(p, oh->atime);
- UINT32DECODE(p, oh->mtime);
- UINT32DECODE(p, oh->ctime);
- UINT32DECODE(p, oh->btime);
+ uint32_t tmp; /* Temporary value */
+
+ UINT32DECODE(p, tmp);
+ oh->atime = (time_t)tmp;
+ UINT32DECODE(p, tmp);
+ oh->mtime = (time_t)tmp;
+ UINT32DECODE(p, tmp);
+ oh->ctime = (time_t)tmp;
+ UINT32DECODE(p, tmp);
+ oh->btime = (time_t)tmp;
} /* end if */
else
oh->atime = oh->mtime = oh->ctime = oh->btime = 0;
@@ -216,7 +223,7 @@ H5O_cache_deserialize(haddr_t addr, size_t len, const void *image,
UINT16DECODE(p, oh->max_compact);
UINT16DECODE(p, oh->min_dense);
if(oh->max_compact < oh->min_dense)
- HGOTO_ERROR(H5E_OHDR, H5E_VERSION, NULL, "bad object header attribute phase change values")
+ HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, NULL, "bad object header attribute phase change values")
} /* end if */
else {
oh->max_compact = H5O_CRT_ATTR_MAX_COMPACT_DEF;
@@ -245,7 +252,7 @@ H5O_cache_deserialize(haddr_t addr, size_t len, const void *image,
HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, NULL, "bad size for chunk 0")
} /* end switch */
if(oh->chunk0_size > 0 && oh->chunk0_size < H5O_SIZEOF_MSGHDR_OH(oh))
- HGOTO_ERROR(H5E_OHDR, H5E_VERSION, NULL, "bad object header chunk size")
+ HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, NULL, "bad object header chunk size")
} /* end if */
else {
/* Version */
@@ -276,7 +283,7 @@ H5O_cache_deserialize(haddr_t addr, size_t len, const void *image,
UINT32DECODE(p, oh->chunk0_size);
if((udata->v1_pfx_nmesgs > 0 && oh->chunk0_size < H5O_SIZEOF_MSGHDR_OH(oh)) ||
(udata->v1_pfx_nmesgs == 0 && oh->chunk0_size > 0))
- HGOTO_ERROR(H5E_OHDR, H5E_VERSION, NULL, "bad object header chunk size")
+ HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, NULL, "bad object header chunk size")
/* Reserved, in version 1 (for 8-byte alignment padding) */
p += 4;
@@ -386,7 +393,10 @@ H5O_cache_serialize(const H5F_t *f, hid_t dxpl_id, haddr_t UNUSED addr,
* on the entire block of memory needs to be updated if anything is
* modified */
if(oh->version > H5O_VERSION_1) {
- uint64_t chunk0_size = oh->chunk[0].size - H5O_SIZEOF_HDR(oh); /* Size of chunk 0's data */
+ uint64_t chunk0_size; /* Size of chunk 0's data */
+
+ HDassert(oh->chunk[0].size >= (size_t)H5O_SIZEOF_HDR(oh));
+ chunk0_size = oh->chunk[0].size - (size_t)H5O_SIZEOF_HDR(oh);
/* Magic number */
HDmemcpy(p, H5O_HDR_MAGIC, (size_t)H5O_SIZEOF_MAGIC);
@@ -416,7 +426,7 @@ H5O_cache_serialize(const H5F_t *f, hid_t dxpl_id, haddr_t UNUSED addr,
switch(oh->flags & H5O_HDR_CHUNK0_SIZE) {
case 0: /* 1 byte size */
HDassert(chunk0_size < 256);
- *p++ = chunk0_size;
+ *p++ = (uint8_t)chunk0_size;
break;
case 1: /* 2 byte size */
@@ -457,7 +467,7 @@ H5O_cache_serialize(const H5F_t *f, hid_t dxpl_id, haddr_t UNUSED addr,
UINT32ENCODE(p, oh->nlink);
/* First chunk size */
- UINT32ENCODE(p, (oh->chunk[0].size - H5O_SIZEOF_HDR(oh)));
+ UINT32ENCODE(p, (oh->chunk[0].size - (size_t)H5O_SIZEOF_HDR(oh)));
/* Zero to alignment */
HDmemset(p, 0, (size_t)(H5O_SIZEOF_HDR(oh) - 12));
@@ -549,6 +559,7 @@ H5O_cache_chk_deserialize(haddr_t addr, size_t len, const void *image,
HGOTO_ERROR(H5E_OHDR, H5E_CANTALLOC, NULL, "memory allocation failed")
/* Check if we are still decoding the object header */
+ /* (as opposed to bringing a piece of it back from the file) */
if(udata->decoding) {
/* Sanity check */
HDassert(udata->common.f);
@@ -654,16 +665,19 @@ static herr_t
H5O_cache_chk_free_icr(haddr_t UNUSED addr, size_t UNUSED len, void *thing)
{
H5O_chunk_proxy_t *chk_proxy = (H5O_chunk_proxy_t *)thing; /* Object header chunk proxy to destroy */
+ herr_t ret_value = SUCCEED; /* Return value */
- FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_cache_chk_free_icr)
+ FUNC_ENTER_NOAPI_NOINIT(H5O_cache_chk_free_icr)
/* Check arguments */
HDassert(chk_proxy);
/* Destroy object header chunk proxy */
- H5O_chunk_proxy_dest(chk_proxy);
+ if(H5O_chunk_proxy_dest(chk_proxy) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "unable to destroy object header chunk proxy")
- FUNC_LEAVE_NOAPI(SUCCEED)
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_cache_chk_free_icr() */
@@ -769,7 +783,7 @@ H5O_chunk_deserialize(H5O_t *oh, haddr_t addr, size_t len, const uint8_t *image,
if(chunkno == 0) {
/* First chunk's 'image' includes room for the object header prefix */
oh->chunk[0].addr = addr;
- oh->chunk[0].size = len + H5O_SIZEOF_HDR(oh);
+ oh->chunk[0].size = len + (size_t)H5O_SIZEOF_HDR(oh);
} /* end if */
else {
oh->chunk[chunkno].addr = addr;
@@ -952,7 +966,7 @@ H5O_chunk_deserialize(H5O_t *oh, haddr_t addr, size_t len, const uint8_t *image,
HDassert(nullcnt == 0);
/* Set gap information for chunk */
- oh->chunk[chunkno].gap = (eom_ptr - p);
+ oh->chunk[chunkno].gap = (size_t)(eom_ptr - p);
/* Increment location in chunk */
p += oh->chunk[chunkno].gap;
@@ -1127,7 +1141,7 @@ H5O_chunk_proxy_dest(H5O_chunk_proxy_t *chk_proxy)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDEC, FAIL, "can't decrement reference count on object header")
/* Release the chunk proxy object */
- H5FL_FREE(H5O_chunk_proxy_t, chk_proxy);
+ chk_proxy = H5FL_FREE(H5O_chunk_proxy_t, chk_proxy);
done:
FUNC_LEAVE_NOAPI(ret_value)
diff --git a/src/H5Ochunk.c b/src/H5Ochunk.c
index 0420799..da07d7a 100644
--- a/src/H5Ochunk.c
+++ b/src/H5Ochunk.c
@@ -154,7 +154,7 @@ H5O_chunk_protect(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned idx)
HDassert(oh);
HDassert(idx < oh->nchunks);
- /* Check for marking first chunk as dirty */
+ /* Check for protecting first chunk */
if(0 == idx) {
/* Create new "fake" chunk proxy for first chunk */
/* (since the first chunk is already handled by the H5O_t object) */
@@ -233,11 +233,10 @@ H5O_chunk_unprotect(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_chunk_proxy_t *chk_p
if(H5AC_mark_pinned_or_protected_entry_dirty(oh) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTMARKDIRTY, FAIL, "unable to mark object header as dirty")
} /* end else/if */
- else
- {
+ else {
/* Sanity check */
HDassert(0 && "Unknown chunk proxy flag(s)?!?");
- }
+ } /* end else */
/* Free fake chunk proxy */
H5FL_FREE(H5O_chunk_proxy_t, chk_proxy);
diff --git a/src/H5Opkg.h b/src/H5Opkg.h
index 276601c..13e46e8 100644
--- a/src/H5Opkg.h
+++ b/src/H5Opkg.h
@@ -25,7 +25,7 @@
/* Other private headers needed by this file */
#include "H5ACprivate.h" /* Metadata cache */
-#include "H5FLprivate.h" /* Free Lists */
+#include "H5FLprivate.h" /* Free Lists */
/* Object header macros */
#define H5O_NMESGS 8 /*initial number of messages */
@@ -247,8 +247,8 @@ typedef struct H5O_chunk_t {
} H5O_chunk_t;
struct H5O_t {
- H5AC_info_t cache_info; /* Information for metadata cache functions, _must_ be */
- /* first field in structure */
+ H5AC_info_t cache_info; /* Information for metadata cache functions, _must_ be */
+ /* first field in structure */
/* File-specific information (not stored) */
size_t sizeof_size; /* Size of file sizes */
diff --git a/src/H5Oprivate.h b/src/H5Oprivate.h
index a960ff8..fb3b1f7 100644
--- a/src/H5Oprivate.h
+++ b/src/H5Oprivate.h
@@ -63,8 +63,6 @@ typedef struct H5O_t H5O_t;
#define H5O_FHEAP_MAX_MAN_SIZE (4 * 1024)
#define H5O_FHEAP_ID_LEN 8
-/* #define H5O_ENABLE_BOGUS 1 */
-
/* Object header macros */
#define H5O_MESG_MAX_SIZE 65536 /*max obj header message size */
#define H5O_ALL (-1) /* Operate on all messages of type */