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authorScot Breitenfeld <brtnfld@hdfgroup.org>2016-10-14 14:13:25 (GMT)
committerScot Breitenfeld <brtnfld@hdfgroup.org>2016-10-14 14:13:25 (GMT)
commitbaecf9c5e6dc0358d1188657bc6a9695a61db431 (patch)
treebfdee4e0012b86ff4962aad38246549f4d76c57c
parent79dca0ba25146755d0c92b0117a2b6936e6349f3 (diff)
parentde07b2d22435741fa7dc68faa80df3c0207c89fa (diff)
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Merge pull request #73 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:hdffv-9987 to develop
* commit 'de07b2d22435741fa7dc68faa80df3c0207c89fa': Fix:HDFFV-9987 With HDF5-1.10 you cannot specify default dataspace for Fortran (H5S_ALL_F)
-rw-r--r--fortran/src/H5_f.c45
-rw-r--r--fortran/src/H5_ff.F905
-rw-r--r--fortran/src/H5f90global.F9046
-rw-r--r--fortran/src/H5f90proto.h14
-rw-r--r--fortran/test/tH5T.F902
-rw-r--r--fortran/test/tH5T_F03.F902
6 files changed, 66 insertions, 48 deletions
diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c
index f9fe927..860f9cb 100644
--- a/fortran/src/H5_f.c
+++ b/fortran/src/H5_f.c
@@ -334,6 +334,7 @@ h5close_types_c( hid_t_f * types, int_f *lentypes,
* h5p_flags_int - H5P interface flags of type integer
* h5r_flags - H5R interface flags
* h5s_flags - H5S interface flags
+ * h5s_hid_flags - H5S interface flags of type hid_t
* h5s_hsize_flags - H5S interface flags of type hsize_t
* h5t_flags - H5T interface flags
* h5z_flags - H5Z interface flags
@@ -356,6 +357,8 @@ h5close_types_c( hid_t_f * types, int_f *lentypes,
* MSB, July 9, 2009
* Added type h5d_flags of type size_t
* MSB, Feb. 28, 2014
+ * Added type h5s_hid_flags of type hid_t
+ * MSB, Oct. 10, 2016
* SOURCE
*/
int_f
@@ -363,8 +366,9 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags,
int_f *h5fd_flags, hid_t_f *h5fd_hid_flags,
int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags,
- hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags,
- hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags,
+ hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags,
+ int_f *h5s_flags, hid_t_f *h5s_hid_flags, hsize_t_f *h5s_hsize_flags,
+ int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags,
haddr_t_f *h5_haddr_generic_flags)
/******/
{
@@ -593,29 +597,32 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
/*
* H5S flags
*/
+
+ h5s_hid_flags[0] = (hid_t_f)H5S_ALL;
+
+ h5s_hsize_flags[0] = (hsize_t_f)H5S_UNLIMITED;
+
h5s_flags[0] = (int_f)H5S_SCALAR;
h5s_flags[1] = (int_f)H5S_SIMPLE;
h5s_flags[2] = (int_f)H5S_NULL;
h5s_flags[3] = (int_f)H5S_SELECT_SET;
h5s_flags[4] = (int_f)H5S_SELECT_OR;
- h5s_flags[5] = (int_f)H5S_ALL;
-
- h5s_flags[6] = (int_f)H5S_SELECT_NOOP;
- h5s_flags[7] = (int_f)H5S_SELECT_AND;
- h5s_flags[8] = (int_f)H5S_SELECT_XOR;
- h5s_flags[9] = (int_f)H5S_SELECT_NOTB;
- h5s_flags[10] = (int_f)H5S_SELECT_NOTA;
- h5s_flags[11] = (int_f)H5S_SELECT_APPEND;
- h5s_flags[12] = (int_f)H5S_SELECT_PREPEND;
- h5s_flags[13] = (int_f)H5S_SELECT_INVALID;
-
- h5s_flags[14] = (int_f)H5S_SEL_ERROR;
- h5s_flags[15] = (int_f)H5S_SEL_NONE;
- h5s_flags[16] = (int_f)H5S_SEL_POINTS;
- h5s_flags[17] = (int_f)H5S_SEL_HYPERSLABS;
- h5s_flags[18] = (int_f)H5S_SEL_ALL;
- h5s_hsize_flags[0] = (hsize_t_f)H5S_UNLIMITED;
+ h5s_flags[5] = (int_f)H5S_SELECT_NOOP;
+ h5s_flags[6] = (int_f)H5S_SELECT_AND;
+ h5s_flags[7] = (int_f)H5S_SELECT_XOR;
+ h5s_flags[8] = (int_f)H5S_SELECT_NOTB;
+ h5s_flags[9] = (int_f)H5S_SELECT_NOTA;
+
+ h5s_flags[10] = (int_f)H5S_SELECT_APPEND;
+ h5s_flags[11] = (int_f)H5S_SELECT_PREPEND;
+ h5s_flags[12] = (int_f)H5S_SELECT_INVALID;
+ h5s_flags[13] = (int_f)H5S_SEL_ERROR;
+ h5s_flags[14] = (int_f)H5S_SEL_NONE;
+
+ h5s_flags[15] = (int_f)H5S_SEL_POINTS;
+ h5s_flags[16] = (int_f)H5S_SEL_HYPERSLABS;
+ h5s_flags[17] = (int_f)H5S_SEL_ALL;
/*
* H5T flags
diff --git a/fortran/src/H5_ff.F90 b/fortran/src/H5_ff.F90
index 228e148..f2036ee 100644
--- a/fortran/src/H5_ff.F90
+++ b/fortran/src/H5_ff.F90
@@ -102,6 +102,7 @@ CONTAINS
i_H5P_flags_int, &
i_H5R_flags, &
i_H5S_flags, &
+ i_H5S_hid_flags, &
i_H5S_hsize_flags, &
i_H5T_flags, &
i_H5Z_flags, &
@@ -114,7 +115,7 @@ CONTAINS
H5F_FLAGS_LEN, H5G_FLAGS_LEN, H5FD_FLAGS_LEN, &
H5FD_HID_FLAGS_LEN, H5I_FLAGS_LEN, H5L_FLAGS_LEN, &
H5O_FLAGS_LEN, H5P_FLAGS_LEN, H5P_FLAGS_INT_LEN, &
- H5R_FLAGS_LEN, H5S_FLAGS_LEN, H5S_HSIZE_FLAGS_LEN, &
+ H5R_FLAGS_LEN, H5S_FLAGS_LEN, H5S_HID_FLAGS_LEN, H5S_HSIZE_FLAGS_LEN, &
H5T_FLAGS_LEN, H5Z_FLAGS_LEN, H5generic_FLAGS_LEN, H5generic_haddr_FLAGS_LEN
IMPLICIT NONE
INTEGER i_H5D_flags(H5D_FLAGS_LEN)
@@ -132,6 +133,7 @@ CONTAINS
INTEGER i_H5P_flags_int(H5P_FLAGS_INT_LEN)
INTEGER i_H5R_flags(H5R_FLAGS_LEN)
INTEGER i_H5S_flags(H5S_FLAGS_LEN)
+ INTEGER(HID_T) i_H5S_hid_flags(H5S_HID_FLAGS_LEN)
INTEGER(HSIZE_T) i_H5S_hsize_flags(H5S_HSIZE_FLAGS_LEN)
INTEGER i_H5T_flags(H5T_FLAGS_LEN)
INTEGER i_H5Z_flags(H5Z_FLAGS_LEN)
@@ -163,6 +165,7 @@ CONTAINS
H5P_flags_int, &
H5R_flags, &
H5S_flags, &
+ H5S_hid_flags, &
H5S_hsize_flags, &
H5T_flags, &
H5Z_flags, &
diff --git a/fortran/src/H5f90global.F90 b/fortran/src/H5f90global.F90
index b84f6c2..a85ee50 100644
--- a/fortran/src/H5f90global.F90
+++ b/fortran/src/H5f90global.F90
@@ -747,25 +747,29 @@ MODULE H5GLOBAL
!
! H5S flags declaration
!
- INTEGER, PARAMETER :: H5S_FLAGS_LEN = 19
+ INTEGER, PARAMETER :: H5S_FLAGS_LEN = 18
INTEGER :: H5S_flags(H5S_FLAGS_LEN)
INTEGER, PARAMETER :: H5S_HSIZE_FLAGS_LEN = 1
INTEGER(HSIZE_T) H5S_hsize_flags(H5S_HSIZE_FLAGS_LEN)
+ INTEGER, PARAMETER :: H5S_HID_FLAGS_LEN = 1
+ INTEGER(HSIZE_T) H5S_hid_flags(H5S_HID_FLAGS_LEN)
!DEC$if defined(BUILD_HDF5_DLL)
!DEC$ATTRIBUTES DLLEXPORT :: /H5S_FLAGS/
+ !DEC$ATTRIBUTES DLLEXPORT :: /H5S_HID_FLAGS/
!DEC$ATTRIBUTES DLLEXPORT :: /H5S_HSIZE_FLAGS/
!DEC$endif
COMMON /H5S_FLAGS/ H5S_flags
+ COMMON /H5S_HID_FLAGS/ H5S_hid_flags
COMMON /H5S_HSIZE_FLAGS/ H5S_hsize_flags
INTEGER(HSIZE_T) :: H5S_UNLIMITED_F
+ INTEGER(HID_T) :: H5S_ALL_F
+
INTEGER :: H5S_SCALAR_F
INTEGER :: H5S_SIMPLE_F
INTEGER :: H5S_NULL_F
- INTEGER :: H5S_ALL_F
-
INTEGER :: H5S_SELECT_NOOP_F
INTEGER :: H5S_SELECT_SET_F
INTEGER :: H5S_SELECT_OR_F
@@ -783,29 +787,31 @@ MODULE H5GLOBAL
INTEGER :: H5S_SEL_HYPERSLABS_F
INTEGER :: H5S_SEL_ALL_F
+ EQUIVALENCE(H5S_hid_flags(1), H5S_ALL_F)
+
EQUIVALENCE(H5S_hsize_flags(1), H5S_UNLIMITED_F)
+
EQUIVALENCE(H5S_flags(1), H5S_SCALAR_F)
EQUIVALENCE(H5S_flags(2), H5S_SIMPLE_F)
EQUIVALENCE(H5S_flags(3), H5S_NULL_F)
EQUIVALENCE(H5S_flags(4), H5S_SELECT_SET_F)
EQUIVALENCE(H5S_flags(5), H5S_SELECT_OR_F)
- EQUIVALENCE(H5S_flags(6), H5S_ALL_F)
-
- EQUIVALENCE(H5S_flags(7), H5S_SELECT_NOOP_F)
- EQUIVALENCE(H5S_flags(8), H5S_SELECT_AND_F)
- EQUIVALENCE(H5S_flags(9), H5S_SELECT_XOR_F)
- EQUIVALENCE(H5S_flags(10), H5S_SELECT_NOTB_F)
- EQUIVALENCE(H5S_flags(11), H5S_SELECT_NOTA_F)
- EQUIVALENCE(H5S_flags(12), H5S_SELECT_APPEND_F)
- EQUIVALENCE(H5S_flags(13), H5S_SELECT_PREPEND_F)
- EQUIVALENCE(H5S_flags(14), H5S_SELECT_INVALID_F)
-
-
- EQUIVALENCE(H5S_flags(15), H5S_SEL_ERROR_F)
- EQUIVALENCE(H5S_flags(16), H5S_SEL_NONE_F)
- EQUIVALENCE(H5S_flags(17), H5S_SEL_POINTS_F)
- EQUIVALENCE(H5S_flags(18), H5S_SEL_HYPERSLABS_F)
- EQUIVALENCE(H5S_flags(19), H5S_SEL_ALL_F)
+
+ EQUIVALENCE(H5S_flags(6), H5S_SELECT_NOOP_F)
+ EQUIVALENCE(H5S_flags(7), H5S_SELECT_AND_F)
+ EQUIVALENCE(H5S_flags(8), H5S_SELECT_XOR_F)
+ EQUIVALENCE(H5S_flags(9), H5S_SELECT_NOTB_F)
+ EQUIVALENCE(H5S_flags(10), H5S_SELECT_NOTA_F)
+
+ EQUIVALENCE(H5S_flags(11), H5S_SELECT_APPEND_F)
+ EQUIVALENCE(H5S_flags(12), H5S_SELECT_PREPEND_F)
+ EQUIVALENCE(H5S_flags(13), H5S_SELECT_INVALID_F)
+ EQUIVALENCE(H5S_flags(14), H5S_SEL_ERROR_F)
+ EQUIVALENCE(H5S_flags(15), H5S_SEL_NONE_F)
+
+ EQUIVALENCE(H5S_flags(16), H5S_SEL_POINTS_F)
+ EQUIVALENCE(H5S_flags(17), H5S_SEL_HYPERSLABS_F)
+ EQUIVALENCE(H5S_flags(18), H5S_SEL_ALL_F)
!
! H5T flags declaration
diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h
index f8b4564..67f28db 100644
--- a/fortran/src/H5f90proto.h
+++ b/fortran/src/H5f90proto.h
@@ -525,12 +525,14 @@ H5_FCDLL int_f h5open_c(void);
H5_FCDLL int_f h5close_c(void);
H5_FCDLL int_f h5init_types_c(hid_t_f *types, hid_t_f *floatingtypes, hid_t_f *integertypes);
H5_FCDLL int_f h5close_types_c(hid_t_f *types, int_f *lentypes, hid_t_f *floatingtypes, int_f *floatinglen, hid_t_f *integertypes, int_f *integerlen);
-H5_FCDLL int_f h5init_flags_c(int_f *h5d_flags, size_t_f *h5d_size_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags,
- int_f *h5fd_flags, hid_t_f *h5fd_hid_flags,
- int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags,
- hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags,
- hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags,
- haddr_t_f *h5_haddr_generic_flags);
+H5_FCDLL int_f h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
+ int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags,
+ int_f *h5fd_flags, hid_t_f *h5fd_hid_flags,
+ int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags,
+ hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags,
+ int_f *h5s_flags, hid_t_f *h5s_hid_flags, hsize_t_f *h5s_hsize_flags,
+ int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags,
+ haddr_t_f *h5_haddr_generic_flags);
H5_FCDLL int_f h5init1_flags_c(int_f *h5lib_flags);
H5_FCDLL int_f h5get_libversion_c(int_f *majnum, int_f *minnum, int_f *relnum);
H5_FCDLL int_f h5check_version_c(int_f *majnum, int_f *minnum, int_f *relnum);
diff --git a/fortran/test/tH5T.F90 b/fortran/test/tH5T.F90
index efbceea..1a3a382 100644
--- a/fortran/test/tH5T.F90
+++ b/fortran/test/tH5T.F90
@@ -490,7 +490,7 @@ CONTAINS
!
! Read part of the dataset
!
- CALL h5dread_f(dset_id, dt1_id, char_member_out, data_dims, error)
+ CALL h5dread_f(dset_id, dt1_id, char_member_out, data_dims, error, H5S_ALL_F, H5S_ALL_F, H5P_DEFAULT_F)
CALL check("h5dread_f", error, total_error)
do i = 1, dimsize
if (char_member_out(i) .ne. char_member(i)) then
diff --git a/fortran/test/tH5T_F03.F90 b/fortran/test/tH5T_F03.F90
index c8be606..c596d31 100644
--- a/fortran/test/tH5T_F03.F90
+++ b/fortran/test/tH5T_F03.F90
@@ -249,7 +249,7 @@ SUBROUTINE test_array_compound_atomic(total_error)
! Read dataset from disk
f_ptr = C_LOC(rdata(1,1))
- CALL H5Dread_f(dataset, tid1, f_ptr, error)
+ CALL H5Dread_f(dataset, tid1, f_ptr, error, H5S_ALL_F, H5S_ALL_F, H5P_DEFAULT_F)
CALL check("H5Dread_f", error, total_error)
! Compare data read in