[svn-r27835] Description:

    Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)

1 files changed, 142 insertions, 105 deletions

diff --git a/MANIFEST b/MANIFEST
index 21186ed..eef2b5a 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -27,22 +27,16 @@
 ./MANIFEST
 ./Makefile.dist
 ./Makefile.am
-./Makefile.in
-./m4/ltsugar.m4                         _DO_NOT_DISTRIBUTE_
-./m4/libtool.m4                         _DO_NOT_DISTRIBUTE_
-./m4/ltversion.m4                       _DO_NOT_DISTRIBUTE_
-./m4/lt~obsolete.m4                     _DO_NOT_DISTRIBUTE_
-./m4/ltoptions.m4                       _DO_NOT_DISTRIBUTE_
-./m4/aclocal_cxx.m4
 ./m4/aclocal_fc.m4
+./m4/aclocal_cxx.m4
 ./README.txt
-./aclocal.m4
+./BRANCH.txt
 ./acsite.m4
-./configure
+./autogen.sh           _DO_NOT_DISTRIBUTE_
 ./configure.ac
 
 ./bin/COPYING
-./bin/bbrelease       _DO_NOT_DISTRIBUTE_
+./bin/bbrelease         _DO_NOT_DISTRIBUTE_
 ./bin/buildhdf5
 ./bin/checkapi        _DO_NOT_DISTRIBUTE_
 ./bin/checkposix      _DO_NOT_DISTRIBUTE_
@@ -50,38 +44,27 @@
 ./bin/chkcopyright      _DO_NOT_DISTRIBUTE_
 ./bin/chkmanifest
 ./bin/cmakehdf5
-./bin/compile
-./bin/config.guess
-./bin/config.sub
 ./bin/debug-ohdr      _DO_NOT_DISTRIBUTE_
 ./bin/dependencies
-./bin/depcomp
 ./bin/deploy
 ./bin/distdep
 ./bin/errors              _DO_NOT_DISTRIBUTE_
-./bin/genltanalyze      _DO_NOT_DISTRIBUTE_
 ./bin/gcov_script            _DO_NOT_DISTRIBUTE_
 ./bin/h5vers
-./bin/install-sh
 ./bin/iostats
 ./bin/locate_sw
-./bin/ltmain.sh
 ./bin/make_err
 ./bin/make_overflow
 ./bin/make_vers
 ./bin/makehelp
-./bin/missing
 ./bin/mkdirs
-./bin/mkinstalldirs
 ./bin/newer
-./bin/reconfigure      _DO_NOT_DISTRIBUTE_
 ./bin/output_filter.sh
 ./bin/README        _DO_NOT_DISTRIBUTE_
 ./bin/release
 ./bin/runtest        _DO_NOT_DISTRIBUTE_
 ./bin/snapshot
 ./bin/snapshot_version      _DO_NOT_DISTRIBUTE_
-./bin/test-driver
 ./bin/timekeeper      _DO_NOT_DISTRIBUTE_
 ./bin/trace
 ./bin/yodconfigure
@@ -119,7 +102,6 @@
 
 ./examples/Attributes.txt
 ./examples/Makefile.am
-./examples/Makefile.in
 ./examples/h5_chunk_read.c
 ./examples/h5_compound.c
 ./examples/h5_crtgrpd.c
@@ -167,12 +149,9 @@
 
 ./fortran/COPYING
 ./fortran/Makefile.am
-./fortran/Makefile.in
-
 ./fortran/robodoc.rc
 
 ./fortran/examples/Makefile.am
-./fortran/examples/Makefile.in
 ./fortran/examples/compound.f90
 ./fortran/examples/compound_fortran2003.f90
 ./fortran/examples/compound_complex_fortran2003.f90
@@ -182,7 +161,9 @@
 ./fortran/examples/h5_crtgrp.f90
 ./fortran/examples/h5_crtgrpar.f90
 ./fortran/examples/h5_crtgrpd.f90
+./hl/fortran/examples/exlite.f90
 ./fortran/examples/h5_extend.f90
+./hl/fortran/examples/ex_ds1.f90
 ./fortran/examples/h5_rdwt.f90
 ./fortran/examples/h5_subset.f90
 ./fortran/examples/hyperslab.f90
@@ -196,6 +177,7 @@
 ./fortran/examples/nested_derived_type.f90
 ./fortran/examples/rwdset_fortran2003.f90
 
+./fortran/src/H5_buildiface.F90
 ./fortran/src/H5_f.c
 ./fortran/src/H5_ff.F90
 ./fortran/src/H5Af.c
@@ -224,32 +206,29 @@
 ./fortran/src/H5Tff.F90
 ./fortran/src/H5Zf.c
 ./fortran/src/H5Zff.F90
+./fortran/src/H5config_f.inc.cmake
+./fortran/src/H5config_f.inc.in
+./fortran/src/H5fort_type_defines.h.in
 ./fortran/src/H5f90.h
 ./fortran/src/H5f90global.F90
 ./fortran/src/H5f90i.h
 ./fortran/src/H5f90kit.c
 ./fortran/src/H5f90proto.h
-./fortran/src/H5_buildiface.F90
 ./fortran/src/H5match_types.c
 ./fortran/src/HDF5.F90
-./fortran/src/H5config_f.inc.in
-./fortran/src/H5config_f.inc.cmake
-./fortran/src/H5fort_type_defines.h.in
 ./fortran/src/Makefile.am
-./fortran/src/Makefile.in
 ./fortran/src/README
 ./fortran/src/README_DEVELOPEMENT   _DO_NOT_DISTRIBUTE_
 ./fortran/src/h5fc.in
 ./fortran/src/hdf5_fortrandll.def.in
 
+
 ./fortran/test/Makefile.am
-./fortran/test/Makefile.in
 ./fortran/test/fflush1.F90
 ./fortran/test/fflush2.F90
 ./fortran/test/fortranlib_test.F90
 ./fortran/test/fortranlib_test_1_8.F90
 ./fortran/test/fortranlib_test_F03.F90
-./fortran/test/H5_test_buildiface.F90
 ./fortran/test/t.c
 ./fortran/test/t.h
 ./fortran/test/tf.F90
@@ -279,9 +258,9 @@
 ./fortran/test/tHDF5_1_8.F90
 ./fortran/test/tHDF5_F03.F90
 ./fortran/test/tHDF5.F90
+./fortran/test/H5_test_buildiface.F90
 
 ./fortran/testpar/Makefile.am
-./fortran/testpar/Makefile.in
 ./fortran/testpar/ptest.f90
 ./fortran/testpar/hyper.f90
 ./fortran/testpar/mdset.f90
@@ -300,7 +279,6 @@
 
 ./c++/COPYING
 ./c++/Makefile.am
-./c++/Makefile.in
 
 ./c++/examples/chunks.cpp
 ./c++/examples/compound.cpp
@@ -321,7 +299,6 @@
 ./c++/examples/testh5c++.sh.in
 ./c++/examples/writedata.cpp
 ./c++/examples/Makefile.am
-./c++/examples/Makefile.in
 ./c++/examples/run-c++-ex.sh.in
 
 ./c++/src/H5AbstractDs.cpp
@@ -384,11 +361,10 @@
 ./c++/src/H5VarLenType.cpp
 ./c++/src/H5VarLenType.h
 ./c++/src/Makefile.am
-./c++/src/Makefile.in
 ./c++/src/RM_stylesheet.css
 ./c++/src/cpp_doc_config
-./c++/src/footer.html
 ./c++/src/h5c++.in
+./c++/src/footer.html
 ./c++/src/header.html
 ./c++/src/header_files/filelist.xml
 ./c++/src/header_files/hdf_logo.jpg
@@ -398,7 +374,6 @@
 
 ./c++/test/H5srcdir_str.h.in
 ./c++/test/Makefile.am
-./c++/test/Makefile.in
 ./c++/test/dsets.cpp
 ./c++/test/h5cpputil.cpp
 ./c++/test/h5cpputil.h
@@ -444,28 +419,27 @@
 ./src/H5dbg.c
 ./src/H5api_adpt.h
 ./src/H5err.txt
-./src/H5config.h.in
 ./src/H5detect.c
 ./src/H5make_libsettings.c
 ./src/H5overflow.txt
-./src/H5overflow.h
 ./src/H5private.h
 ./src/H5public.h
 ./src/H5system.c
 ./src/H5timer.c
 ./src/H5trace.c
 ./src/H5vers.txt
-./src/H5version.h
 ./src/H5A.c
 ./src/H5Abtree2.c
 ./src/H5Adense.c
 ./src/H5Adeprec.c
 ./src/H5Aint.c
+./src/H5Amodule.h
 ./src/H5Atest.c
 ./src/H5Apkg.h
 ./src/H5Aprivate.h
 ./src/H5Apublic.h
 ./src/H5AC.c
+./src/H5ACmodule.h
 ./src/H5ACmpio.c
 ./src/H5ACpkg.h
 ./src/H5ACprivate.h
@@ -473,6 +447,7 @@
 ./src/H5B.c
 ./src/H5Bcache.c
 ./src/H5Bdbg.c
+./src/H5Bmodule.h
 ./src/H5Bpkg.h
 ./src/H5Bprivate.h
 ./src/H5Bpublic.h
@@ -481,12 +456,14 @@
 ./src/H5B2dbg.c
 ./src/H5B2hdr.c
 ./src/H5B2int.c
+./src/H5B2module.h
 ./src/H5B2pkg.h
 ./src/H5B2private.h
 ./src/H5B2public.h
 ./src/H5B2stat.c
 ./src/H5B2test.c
 ./src/H5C.c
+./src/H5Cmodule.h
 ./src/H5Cmpio.c
 ./src/H5Cpkg.h
 ./src/H5Cprivate.h
@@ -505,6 +482,7 @@
 ./src/H5Dint.c
 ./src/H5Dio.c
 ./src/H5Dlayout.c
+./src/H5Dmodule.h
 ./src/H5Dmpio.c
 ./src/H5Doh.c
 ./src/H5Dpkg.h
@@ -515,15 +493,12 @@
 ./src/H5Dtest.c
 ./src/H5Dvirtual.c
 ./src/H5E.c
-./src/H5Edefin.h
 ./src/H5Edeprec.c
-./src/H5Einit.h
 ./src/H5Eint.c
+./src/H5Emodule.h
 ./src/H5Epkg.h
 ./src/H5Eprivate.h
-./src/H5Epubgen.h
 ./src/H5Epublic.h
-./src/H5Eterm.h
 ./src/H5EA.c
 ./src/H5EAcache.c
 ./src/H5EAdbg.c
@@ -532,6 +507,7 @@
 ./src/H5EAhdr.c
 ./src/H5EAiblock.c
 ./src/H5EAint.c
+./src/H5EAmodule.h
 ./src/H5EApkg.h
 ./src/H5EAprivate.h
 ./src/H5EAsblock.c
@@ -546,6 +522,7 @@
 ./src/H5Ffake.c
 ./src/H5Fint.c
 ./src/H5Fio.c
+./src/H5Fmodule.h
 ./src/H5Fmount.c
 ./src/H5Fmpi.c
 ./src/H5Fquery.c
@@ -562,6 +539,7 @@
 ./src/H5FAdblkpage.c
 ./src/H5FAdblock.c
 ./src/H5FAhdr.c
+./src/H5FAmodule.h
 ./src/H5FApkg.h
 ./src/H5FAprivate.h
 ./src/H5FAstat.c
@@ -571,11 +549,13 @@
 ./src/H5FDcore.h
 ./src/H5FDdirect.c
 ./src/H5FDdirect.h
+./src/H5FDdrvr_module.h
 ./src/H5FDfamily.c
 ./src/H5FDfamily.h
 ./src/H5FDint.c
 ./src/H5FDlog.c
 ./src/H5FDlog.h
+./src/H5FDmodule.h
 ./src/H5FDmpi.c
 ./src/H5FDmpi.h
 ./src/H5FDmpio.c
@@ -593,12 +573,14 @@
 ./src/H5FDwindows.c
 ./src/H5FDwindows.h
 ./src/H5FL.c
+./src/H5FLmodule.h
 ./src/H5FLprivate.h
 ./src/H5FO.c
 ./src/H5FOprivate.h
 ./src/H5FS.c
 ./src/H5FScache.c
 ./src/H5FSdbg.c
+./src/H5FSmodule.h
 ./src/H5FStest.c
 ./src/H5FSstat.c
 ./src/H5FSpkg.h
@@ -615,6 +597,7 @@
 ./src/H5Gint.c
 ./src/H5Glink.c
 ./src/H5Gloc.c
+./src/H5Gmodule.h
 ./src/H5Gname.c
 ./src/H5Gnode.c
 ./src/H5Gobj.c
@@ -637,6 +620,7 @@
 ./src/H5HFiblock.c
 ./src/H5HFiter.c
 ./src/H5HFman.c
+./src/H5HFmodule.h
 ./src/H5HFpkg.h
 ./src/H5HFprivate.h
 ./src/H5HFpublic.h
@@ -648,6 +632,7 @@
 ./src/H5HG.c
 ./src/H5HGcache.c
 ./src/H5HGdbg.c
+./src/H5HGmodule.h
 ./src/H5HGpkg.h
 ./src/H5HGprivate.h
 ./src/H5HGpublic.h
@@ -656,24 +641,28 @@
 ./src/H5HLcache.c
 ./src/H5HLdbg.c
 ./src/H5HLint.c
+./src/H5HLmodule.h
 ./src/H5HLpkg.h
 ./src/H5HLprivate.h
 ./src/H5HLpublic.h
 ./src/H5HP.c
 ./src/H5HPprivate.h
 ./src/H5I.c
+./src/H5Imodule.h
 ./src/H5Ipkg.h
 ./src/H5Iprivate.h
 ./src/H5Ipublic.h
 ./src/H5Itest.c
 ./src/H5L.c
 ./src/H5Lexternal.c
+./src/H5Lmodule.h
 ./src/H5Lpkg.h
 ./src/H5Lprivate.h
 ./src/H5Lpublic.h
 ./src/H5MF.c
 ./src/H5MFaggr.c
 ./src/H5MFdbg.c
+./src/H5MFmodule.h
 ./src/H5MFsection.c
 ./src/H5MFpkg.h
 ./src/H5MFprivate.h
@@ -681,6 +670,7 @@
 ./src/H5MMprivate.h
 ./src/H5MMpublic.h
 ./src/H5MP.c
+./src/H5MPmodule.h
 ./src/H5MPpkg.h
 ./src/H5MPprivate.h
 ./src/H5MPtest.c
@@ -706,6 +696,7 @@
 ./src/H5Olinfo.c
 ./src/H5Olink.c
 ./src/H5Omessage.c
+./src/H5Omodule.h
 ./src/H5Omtime.c
 ./src/H5Oname.c
 ./src/H5Onull.c
@@ -735,6 +726,7 @@
 ./src/H5Pint.c
 ./src/H5Plapl.c
 ./src/H5Plcpl.c
+./src/H5Pmodule.h
 ./src/H5Pocpl.c
 ./src/H5Pocpypl.c
 ./src/H5Ppkg.h
@@ -743,11 +735,13 @@
 ./src/H5Pstrcpl.c
 ./src/H5Ptest.c
 ./src/H5PL.c
+./src/H5PLmodule.h
 ./src/H5PLprivate.h
 ./src/H5PLpublic.h
 ./src/H5PLextern.h
 ./src/H5R.c
 ./src/H5Rdeprec.c
+./src/H5Rmodule.h
 ./src/H5Rpkg.h
 ./src/H5Rprivate.h
 ./src/H5Rpublic.h
@@ -759,6 +753,7 @@
 ./src/H5Sall.c
 ./src/H5Sdbg.c
 ./src/H5Shyper.c
+./src/H5Smodule.h
 ./src/H5Smpio.c
 ./src/H5Snone.c
 ./src/H5Spkg.h
@@ -768,11 +763,13 @@
 ./src/H5Sselect.c
 ./src/H5Stest.c
 ./src/H5SL.c
+./src/H5SLmodule.h
 ./src/H5SLprivate.h
 ./src/H5SM.c
 ./src/H5SMbtree2.c
 ./src/H5SMcache.c
 ./src/H5SMmessage.c
+./src/H5SMmodule.h
 ./src/H5SMpkg.h
 ./src/H5SMprivate.h
 ./src/H5SMtest.c
@@ -791,6 +788,7 @@
 ./src/H5Tfields.c
 ./src/H5Tfixed.c
 ./src/H5Tfloat.c
+./src/H5Tmodule.h
 ./src/H5Tnative.c
 ./src/H5Toffset.c
 ./src/H5Topaque.c
@@ -813,6 +811,7 @@
 ./src/H5Z.c
 ./src/H5Zdeflate.c
 ./src/H5Zfletcher32.c
+./src/H5Zmodule.h
 ./src/H5Znbit.c
 ./src/H5Zpkg.h
 ./src/H5Zprivate.h
@@ -822,7 +821,6 @@
 ./src/H5Zszip.c
 ./src/H5Ztrans.c
 ./src/Makefile.am
-./src/Makefile.in
 ./src/hdf5.h
 ./src/libhdf5.settings.in
 ./src/H5win32defs.h
@@ -831,7 +829,6 @@
 ./test/H5srcdir.h
 ./test/H5srcdir_str.h.in
 ./test/Makefile.am
-./test/Makefile.in
 ./test/accum.c
 ./test/app_ref.c
 ./test/bad_compound.h5
@@ -861,7 +858,7 @@
 ./test/earray.c
 ./test/efc.c
 ./test/enc_dec_plist.c
-./test/enc_dec_plist_with_endianess.c
+./test/enc_dec_plist_cross_platform.c
 ./test/enum.c
 ./test/extend.c
 ./test/external.c
@@ -1001,34 +998,105 @@
 ./test/testfiles/error_test_1
 ./test/testfiles/error_test_2
 ./test/testfiles/links_env.out
-./test/testfiles/plist_files/acpl_be
-./test/testfiles/plist_files/acpl_le
-./test/testfiles/plist_files/dapl_be
-./test/testfiles/plist_files/dapl_le
-./test/testfiles/plist_files/dcpl_be
-./test/testfiles/plist_files/dcpl_le
-./test/testfiles/plist_files/dxpl_be
-./test/testfiles/plist_files/dxpl_le
-./test/testfiles/plist_files/fapl_be
-./test/testfiles/plist_files/fapl_le
-./test/testfiles/plist_files/fcpl_be
-./test/testfiles/plist_files/fcpl_le
-./test/testfiles/plist_files/gcpl_be
-./test/testfiles/plist_files/gcpl_le
-./test/testfiles/plist_files/lapl_be
-./test/testfiles/plist_files/lapl_le
-./test/testfiles/plist_files/lcpl_be
-./test/testfiles/plist_files/lcpl_le
-./test/testfiles/plist_files/ocpl_be
-./test/testfiles/plist_files/ocpl_le
-./test/testfiles/plist_files/ocpypl_be
-./test/testfiles/plist_files/ocpypl_le
-./test/testfiles/plist_files/strcpl_be
-./test/testfiles/plist_files/strcpl_le
+./test/testfiles/plist_files/acpl_32be
+./test/testfiles/plist_files/acpl_32le
+./test/testfiles/plist_files/acpl_64be
+./test/testfiles/plist_files/acpl_64le
+./test/testfiles/plist_files/dapl_32be
+./test/testfiles/plist_files/dapl_32le
+./test/testfiles/plist_files/dapl_64be
+./test/testfiles/plist_files/dapl_64le
+./test/testfiles/plist_files/dcpl_32be
+./test/testfiles/plist_files/dcpl_32le
+./test/testfiles/plist_files/dcpl_64be
+./test/testfiles/plist_files/dcpl_64le
+./test/testfiles/plist_files/def_acpl_32be
+./test/testfiles/plist_files/def_acpl_32le
+./test/testfiles/plist_files/def_acpl_64be
+./test/testfiles/plist_files/def_acpl_64le
+./test/testfiles/plist_files/def_dapl_32be
+./test/testfiles/plist_files/def_dapl_32le
+./test/testfiles/plist_files/def_dapl_64be
+./test/testfiles/plist_files/def_dapl_64le
+./test/testfiles/plist_files/def_dcpl_32be
+./test/testfiles/plist_files/def_dcpl_32le
+./test/testfiles/plist_files/def_dcpl_64be
+./test/testfiles/plist_files/def_dcpl_64le
+./test/testfiles/plist_files/def_dxpl_32be
+./test/testfiles/plist_files/def_dxpl_32le
+./test/testfiles/plist_files/def_dxpl_64be
+./test/testfiles/plist_files/def_dxpl_64le
+./test/testfiles/plist_files/def_fapl_32be
+./test/testfiles/plist_files/def_fapl_32le
+./test/testfiles/plist_files/def_fapl_64be
+./test/testfiles/plist_files/def_fapl_64le
+./test/testfiles/plist_files/def_fcpl_32be
+./test/testfiles/plist_files/def_fcpl_32le
+./test/testfiles/plist_files/def_fcpl_64be
+./test/testfiles/plist_files/def_fcpl_64le
+./test/testfiles/plist_files/def_gcpl_32be
+./test/testfiles/plist_files/def_gcpl_32le
+./test/testfiles/plist_files/def_gcpl_64be
+./test/testfiles/plist_files/def_gcpl_64le
+./test/testfiles/plist_files/def_lapl_32be
+./test/testfiles/plist_files/def_lapl_32le
+./test/testfiles/plist_files/def_lapl_64be
+./test/testfiles/plist_files/def_lapl_64le
+./test/testfiles/plist_files/def_lcpl_32be
+./test/testfiles/plist_files/def_lcpl_32le
+./test/testfiles/plist_files/def_lcpl_64be
+./test/testfiles/plist_files/def_lcpl_64le
+./test/testfiles/plist_files/def_ocpl_32be
+./test/testfiles/plist_files/def_ocpl_32le
+./test/testfiles/plist_files/def_ocpl_64be
+./test/testfiles/plist_files/def_ocpl_64le
+./test/testfiles/plist_files/def_ocpypl_32be
+./test/testfiles/plist_files/def_ocpypl_32le
+./test/testfiles/plist_files/def_ocpypl_64be
+./test/testfiles/plist_files/def_ocpypl_64le
+./test/testfiles/plist_files/def_strcpl_32be
+./test/testfiles/plist_files/def_strcpl_32le
+./test/testfiles/plist_files/def_strcpl_64be
+./test/testfiles/plist_files/def_strcpl_64le
+./test/testfiles/plist_files/dxpl_32be
+./test/testfiles/plist_files/dxpl_32le
+./test/testfiles/plist_files/dxpl_64be
+./test/testfiles/plist_files/dxpl_64le
+./test/testfiles/plist_files/fapl_32be
+./test/testfiles/plist_files/fapl_32le
+./test/testfiles/plist_files/fapl_64be
+./test/testfiles/plist_files/fapl_64le
+./test/testfiles/plist_files/fcpl_32be
+./test/testfiles/plist_files/fcpl_32le
+./test/testfiles/plist_files/fcpl_64be
+./test/testfiles/plist_files/fcpl_64le
+./test/testfiles/plist_files/gcpl_32be
+./test/testfiles/plist_files/gcpl_32le
+./test/testfiles/plist_files/gcpl_64be
+./test/testfiles/plist_files/gcpl_64le
+./test/testfiles/plist_files/lapl_32be
+./test/testfiles/plist_files/lapl_32le
+./test/testfiles/plist_files/lapl_64be
+./test/testfiles/plist_files/lapl_64le
+./test/testfiles/plist_files/lcpl_32be
+./test/testfiles/plist_files/lcpl_32le
+./test/testfiles/plist_files/lcpl_64be
+./test/testfiles/plist_files/lcpl_64le
+./test/testfiles/plist_files/ocpl_32be
+./test/testfiles/plist_files/ocpl_32le
+./test/testfiles/plist_files/ocpl_64be
+./test/testfiles/plist_files/ocpl_64le
+./test/testfiles/plist_files/ocpypl_32be
+./test/testfiles/plist_files/ocpypl_32le
+./test/testfiles/plist_files/ocpypl_64be
+./test/testfiles/plist_files/ocpypl_64le
+./test/testfiles/plist_files/strcpl_32be
+./test/testfiles/plist_files/strcpl_32le
+./test/testfiles/plist_files/strcpl_64be
+./test/testfiles/plist_files/strcpl_64le
 
 ./testpar/COPYING
 ./testpar/Makefile.am
-./testpar/Makefile.in
 ./testpar/t_cache.c
 ./testpar/t_chunk_alloc.c
 ./testpar/t_coll_chunk.c
@@ -1053,10 +1121,8 @@
 
 ./tools/COPYING
 ./tools/Makefile.am
-./tools/Makefile.in
 
 ./tools/h5dump/Makefile.am
-./tools/h5dump/Makefile.in
 ./tools/h5dump/h5dump.c
 ./tools/h5dump/h5dump.h
 ./tools/h5dump/h5dump_defines.h
@@ -1073,7 +1139,6 @@
 ./tools/h5dump/binread.c
 
 ./tools/h5import/Makefile.am
-./tools/h5import/Makefile.in
 ./tools/h5import/h5import.h
 ./tools/h5import/h5import.c
 ./tools/h5import/h5importtest.c
@@ -1132,7 +1197,6 @@
 
 # h5diff sources
 ./tools/h5diff/Makefile.am
-./tools/h5diff/Makefile.in
 ./tools/h5diff/h5diff_common.c
 ./tools/h5diff/h5diff_common.h
 ./tools/h5diff/h5diff_main.c
@@ -1143,7 +1207,6 @@
 
 # h5repack sources
 ./tools/h5repack/Makefile.am
-./tools/h5repack/Makefile.in
 ./tools/h5repack/dynlib_rpk.c
 ./tools/h5repack/h5repack.sh.in
 ./tools/h5repack/h5repack_plugin.sh.in
@@ -1162,21 +1225,18 @@
 # h5ls sources
 ./tools/h5ls/CMakeTestsVDS.cmake
 ./tools/h5ls/Makefile.am
-./tools/h5ls/Makefile.in
 ./tools/h5ls/h5ls.c
 ./tools/h5ls/testh5ls.sh.in
 ./tools/h5ls/testh5lsvds.sh.in
 
 # h5copy sources
 ./tools/h5copy/testh5copy.sh.in
-./tools/h5copy/Makefile.in
 ./tools/h5copy/h5copy.c
 ./tools/h5copy/h5copygentest.c
 ./tools/h5copy/Makefile.am
 
 
 ./tools/lib/Makefile.am
-./tools/lib/Makefile.in
 ./tools/lib/h5diff.c
 ./tools/lib/h5diff.h
 ./tools/lib/h5diff_array.c
@@ -1203,7 +1263,6 @@
 ./tools/lib/io_timer.h
 
 ./tools/misc/Makefile.am
-./tools/misc/Makefile.in
 ./tools/misc/h5cc.in
 ./tools/misc/h5debug.c
 ./tools/misc/h5mkgrp.c
@@ -1233,7 +1292,6 @@
 
 # h5stat sources
 ./tools/h5stat/Makefile.am
-./tools/h5stat/Makefile.in
 ./tools/h5stat/h5stat.c
 
 # h5stat test files
@@ -2130,7 +2188,6 @@
 ./tools/h5jam/h5jam.c
 ./tools/h5jam/h5unjam.c
 ./tools/h5jam/Makefile.am
-./tools/h5jam/Makefile.in
 ./tools/h5jam/h5jamgentest.c
 ./tools/h5jam/testh5jam.sh.in
 ./tools/h5jam/tellub.c
@@ -2174,7 +2231,6 @@
 
 ./tools/perform/COPYING
 ./tools/perform/Makefile.am
-./tools/perform/Makefile.in
 ./tools/perform/build_h5perf_alone.sh
 ./tools/perform/build_h5perf_serial_alone.sh
 ./tools/perform/chunk.c
@@ -2199,9 +2255,7 @@
 # high level libraries
 ./hl/COPYING
 ./hl/Makefile.am
-./hl/Makefile.in
 ./hl/examples/Makefile.am
-./hl/examples/Makefile.in
 ./hl/examples/ex_ds1.c
 ./hl/examples/ex_lite1.c
 ./hl/examples/ex_lite2.c
@@ -2228,7 +2282,6 @@
 ./hl/examples/run-hlc-ex.sh.in
 ./hl/src/COPYING
 ./hl/src/Makefile.am
-./hl/src/Makefile.in
 ./hl/src/H5DO.c
 ./hl/src/H5DOpublic.h
 ./hl/src/H5DS.c
@@ -2240,10 +2293,7 @@
 ./hl/src/H5IMpublic.h
 ./hl/src/H5LT.c
 ./hl/src/H5LTanalyze.l
-./hl/src/H5LTanalyze.c
 ./hl/src/H5LTparse.y
-./hl/src/H5LTparse.c
-./hl/src/H5LTparse.h
 ./hl/src/H5LTprivate.h
 ./hl/src/H5LTpublic.h
 ./hl/src/H5PT.c
@@ -2256,7 +2306,6 @@
 ./hl/test/COPYING
 ./hl/test/H5srcdir_str.h.in
 ./hl/test/Makefile.am
-./hl/test/Makefile.in
 ./hl/test/dsdata.txt
 ./hl/test/dslat.txt
 ./hl/test/dslon.txt
@@ -2288,9 +2337,7 @@
 # tools
 ./hl/tools/COPYING
 ./hl/tools/Makefile.am
-./hl/tools/Makefile.in
 ./hl/tools/gif2h5/Makefile.am
-./hl/tools/gif2h5/Makefile.in
 ./hl/tools/gif2h5/decompress.c
 ./hl/tools/gif2h5/gif.h
 ./hl/tools/gif2h5/gif2hdf.c
@@ -2309,29 +2356,23 @@
 # hl fortran
 ./hl/fortran/COPYING
 ./hl/fortran/Makefile.am
-./hl/fortran/Makefile.in
 ./hl/fortran/examples/Makefile.am
-./hl/fortran/examples/Makefile.in
-./hl/fortran/examples/ex_ds1.f90
-./hl/fortran/examples/exlite.f90
 ./hl/fortran/examples/run-hlfortran-ex.sh.in
 ./hl/fortran/src/hdf5_hl_fortrandll.def.in
 ./hl/fortran/src/H5DSfc.c
 ./hl/fortran/src/H5DSff.F90
+./hl/fortran/src/H5HL_buildiface.F90
 ./hl/fortran/src/H5IMcc.c
 ./hl/fortran/src/H5IMcc.h
 ./hl/fortran/src/H5IMfc.c
 ./hl/fortran/src/H5IMff.F90
-./hl/fortran/src/H5HL_buildiface.F90
 ./hl/fortran/src/H5LTf90proto.h
 ./hl/fortran/src/H5LTfc.c
 ./hl/fortran/src/H5LTff.F90
 ./hl/fortran/src/H5TBfc.c
 ./hl/fortran/src/H5TBff.F90
 ./hl/fortran/src/Makefile.am
-./hl/fortran/src/Makefile.in
 ./hl/fortran/test/Makefile.am
-./hl/fortran/test/Makefile.in
 ./hl/fortran/test/tstds.F90
 ./hl/fortran/test/tstimage.F90
 ./hl/fortran/test/tstlite.F90
@@ -2340,19 +2381,15 @@
 # hl c++
 ./hl/c++/COPYING
 ./hl/c++/Makefile.am
-./hl/c++/Makefile.in
 ./hl/c++/examples/Makefile.am
-./hl/c++/examples/Makefile.in
 ./hl/c++/examples/ptExampleFL.cpp
 ./hl/c++/examples/run-hlc++-ex.sh.in
 ./hl/c++/src/H5PacketTable.h
 ./hl/c++/src/H5PacketTable.cpp
 ./hl/c++/src/Makefile.am
-./hl/c++/src/Makefile.in
 ./hl/c++/test/ptableTest.h
 ./hl/c++/test/ptableTest.cpp
 ./hl/c++/test/Makefile.am
-./hl/c++/test/Makefile.in
 
 # CMake-specific Files
 ./config/cmake/cacheinit.cmake