[svn-r29903] merge from trunk.

1 files changed, 352 insertions, 5 deletions

diff --git a/MANIFEST b/MANIFEST
index 3b6092c..9d40657 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -27,14 +27,33 @@
 ./MANIFEST
 ./Makefile.dist
 ./Makefile.am
-./m4/aclocal_fc.m4
-./m4/aclocal_cxx.m4
 ./README.txt
 ./BRANCH.txt
 ./acsite.m4
 ./autogen.sh
 ./configure.ac
 
+./m4/aclocal_cxx.m4
+./m4/aclocal_fc.m4
+./m4/ax_check_class.m4
+./m4/ax_check_classpath.m4
+./m4/ax_check_java_home.m4
+./m4/ax_check_junit.m4
+./m4/ax_check_rqrd_class.m4
+./m4/ax_java_check_class.m4
+./m4/ax_java_options.m4
+./m4/ax_jni_include_dir.m4
+./m4/ax_prog_jar.m4
+./m4/ax_prog_java_cc.m4
+./m4/ax_prog_java_works.m4
+./m4/ax_prog_java.m4
+./m4/ax_prog_javac_works.m4
+./m4/ax_prog_javac.m4
+./m4/ax_prog_javadoc.m4
+./m4/ax_prog_javah.m4
+./m4/ax_try_compile_java.m4
+./m4/ax_try_run_java.m4
+
 ./bin/COPYING
 ./bin/bbrelease         _DO_NOT_DISTRIBUTE_
 ./bin/buildhdf5
@@ -66,6 +85,7 @@
 ./bin/runtest        _DO_NOT_DISTRIBUTE_
 ./bin/snapshot
 ./bin/snapshot_version      _DO_NOT_DISTRIBUTE_
+./bin/switch_maint_mode      _DO_NOT_DISTRIBUTE_
 ./bin/timekeeper      _DO_NOT_DISTRIBUTE_
 ./bin/trace
 ./bin/yodconfigure
@@ -80,6 +100,7 @@
 ./config/conclude_fc.am
 ./config/examples.am
 ./config/freebsd
+./config/gnu-cxxflags
 ./config/gnu-fflags
 ./config/gnu-flags
 ./config/i386-pc-cygwin32
@@ -215,6 +236,7 @@
 ./fortran/src/H5f90global.F90
 ./fortran/src/H5f90i.h
 ./fortran/src/H5f90kit.c
+./fortran/src/H5fortkit.F90
 ./fortran/src/H5f90proto.h
 ./fortran/src/H5match_types.c
 ./fortran/src/HDF5.F90
@@ -381,6 +403,7 @@
 ./c++/test/dsets.cpp
 ./c++/test/h5cpputil.cpp
 ./c++/test/h5cpputil.h
+./c++/test/tarray.cpp
 ./c++/test/tattr.cpp
 ./c++/test/tcompound.cpp
 ./c++/test/tdspl.cpp
@@ -476,12 +499,15 @@
 ./src/H5CSprivate.h
 ./src/H5D.c
 ./src/H5Dbtree.c
+./src/H5Dbtree2.c
 ./src/H5Dchunk.c
 ./src/H5Dcompact.c
 ./src/H5Dcontig.c
 ./src/H5Ddbg.c
 ./src/H5Ddeprec.c
+./src/H5Dearray.c
 ./src/H5Defl.c
+./src/H5Dfarray.c
 ./src/H5Dfill.c
 ./src/H5Dint.c
 ./src/H5Dio.c
@@ -1377,6 +1403,7 @@
 ./tools/testfiles/filter_fail.h5
 ./tools/testfiles/filter_fail.ddl
 ./tools/testfiles/h5dump-help.txt
+./tools/testfiles/non_existing.ddl
 ./tools/testfiles/packedbits.ddl
 ./tools/testfiles/taindices.h5
 ./tools/testfiles/tall-1.ddl
@@ -1525,6 +1552,13 @@
 ./tools/testfiles/tindicessub3.ddl
 ./tools/testfiles/tindicessub4.ddl
 ./tools/testfiles/tindicessub1.ddl
+./tools/testfiles/tints4dims.ddl
+./tools/testfiles/tints4dimsBlock2.ddl
+./tools/testfiles/tints4dimsBlockEq.ddl
+./tools/testfiles/tints4dimsCount2.ddl
+./tools/testfiles/tints4dimsCountEq.ddl
+./tools/testfiles/tints4dimsStride2.ddl
+./tools/testfiles/tints4dims.h5
 ./tools/testfiles/tintsattrs.ddl
 ./tools/testfiles/tintsattrs.h5
 ./tools/testfiles/tlarge_objname.ddl
@@ -1633,6 +1667,7 @@
 
 # h5dump test error files
 ./tools/h5dump/errfiles/filter_fail.err
+./tools/h5dump/errfiles/non_existing.err
 ./tools/h5dump/errfiles/tall-1.err
 ./tools/h5dump/errfiles/tall-2A.err
 ./tools/h5dump/errfiles/tall-2A0.err
@@ -1739,6 +1774,11 @@
 ./tools/testfiles/vds/tvds_layout-3_2.ddl
 ./tools/testfiles/vds/tvds_layout-4.ddl
 ./tools/testfiles/vds/tvds_layout-5.ddl
+./tools/testfiles/vds/vds-first.ddl
+./tools/testfiles/vds/vds-gap1.ddl
+./tools/testfiles/vds/vds-gap2.ddl
+./tools/testfiles/vds/vds_layout-eiger.ddl
+./tools/testfiles/vds/vds_layout-maxmin.ddl
 ./tools/testfiles/vds/1_a.h5
 ./tools/testfiles/vds/1_b.h5
 ./tools/testfiles/vds/1_c.h5
@@ -1762,6 +1802,14 @@
 ./tools/testfiles/vds/5_b.h5
 ./tools/testfiles/vds/5_c.h5
 ./tools/testfiles/vds/5_vds.h5
+./tools/testfiles/vds/a.h5
+./tools/testfiles/vds/b.h5
+./tools/testfiles/vds/c.h5
+./tools/testfiles/vds/d.h5
+./tools/testfiles/vds/vds-percival-unlim-maxmin.h5
+./tools/testfiles/vds/f-0.h5
+./tools/testfiles/vds/f-3.h5
+./tools/testfiles/vds/vds-eiger.h5
 
 # h5dump h5import validation
 ./tools/testfiles/out3.h5import
@@ -2232,6 +2280,8 @@
 ./tools/h5copy/testfiles/h5copy_extlinks_trg.h5
 ./tools/h5copy/testfiles/h5copy_extlinks_src.out.ls
 ./tools/h5copy/testfiles/h5copy_misc1.out
+./tools/h5copy/testfiles/h5copytst_new.h5
+./tools/h5copy/testfiles/h5copytst_new.out.ls
 
 # test files for h5mkgrp
 ./tools/testfiles/h5mkgrp_nested_p.ls
@@ -2346,6 +2396,7 @@
 ./hl/test/test_image.c
 ./hl/test/test_lite.c
 ./hl/test/test_packet.c
+./hl/test/test_packet_vlen.c
 ./hl/test/test_table.c
 ./hl/test/test_ds_le.h5
 ./hl/test/test_ds_be.h5
@@ -2411,13 +2462,308 @@
 ./hl/c++/test/ptableTest.cpp
 ./hl/c++/test/Makefile.am
 
+# java
+./java/COPYING
+./java/Makefile.am
+./java/CMakeLists.txt
+
+./java/src/Makefile.am
+./java/src/CMakeLists.txt
+./java/src/jni/Makefile.am
+./java/src/jni/CMakeLists.txt
+./java/src/jni/exceptionImp.c
+./java/src/jni/exceptionImp.h
+./java/src/jni/h5Constants.c
+./java/src/jni/nativeData.c
+./java/src/jni/nativeData.h
+./java/src/jni/h5jni.h
+./java/src/jni/h5util.c
+./java/src/jni/h5util.h
+./java/src/jni/h5Imp.c
+./java/src/jni/h5Imp.h
+./java/src/jni/h5aImp.c
+./java/src/jni/h5aImp.h
+./java/src/jni/h5dImp.c
+./java/src/jni/h5dImp.h
+./java/src/jni/h5eImp.c
+./java/src/jni/h5eImp.h
+./java/src/jni/h5fImp.c
+./java/src/jni/h5fImp.h
+./java/src/jni/h5gImp.c
+./java/src/jni/h5gImp.h
+./java/src/jni/h5iImp.c
+./java/src/jni/h5iImp.h
+./java/src/jni/h5lImp.c
+./java/src/jni/h5lImp.h
+./java/src/jni/h5oImp.c
+./java/src/jni/h5oImp.h
+./java/src/jni/h5pImp.c
+./java/src/jni/h5pImp.h
+./java/src/jni/h5plImp.c
+./java/src/jni/h5plImp.h
+./java/src/jni/h5rImp.c
+./java/src/jni/h5rImp.h
+./java/src/jni/h5sImp.c
+./java/src/jni/h5sImp.h
+./java/src/jni/h5tImp.c
+./java/src/jni/h5tImp.h
+./java/src/jni/h5zImp.c
+./java/src/jni/h5zImp.h
+
+./java/src/hdf/CMakeLists.txt
+./java/src/hdf/overview.html
+./java/src/hdf/hdf5lib/CMakeLists.txt
+
+./java/src/hdf/hdf5lib/callbacks/Callbacks.java
+./java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
+./java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
+./java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
+./java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java
+./java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java
+./java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
+./java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
+./java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
+./java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java
+./java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
+
+./java/src/hdf/hdf5lib/exceptions/HDF5AtomException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
+./java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java
+./java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java
+
+./java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
+./java/src/hdf/hdf5lib/structs/H5A_info_t.java
+./java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
+./java/src/hdf/hdf5lib/structs/H5E_error2_t.java
+./java/src/hdf/hdf5lib/structs/H5F_info2_t.java
+./java/src/hdf/hdf5lib/structs/H5G_info_t.java
+./java/src/hdf/hdf5lib/structs/H5L_info_t.java
+./java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
+./java/src/hdf/hdf5lib/structs/H5O_info_t.java
+
+./java/src/hdf/hdf5lib/H5.java
+./java/src/hdf/hdf5lib/HDF5Constants.java
+./java/src/hdf/hdf5lib/HDF5GroupInfo.java
+./java/src/hdf/hdf5lib/HDFArray.java
+./java/src/hdf/hdf5lib/HDFNativeData.java
+
+./java/examples/Makefile.am
+./java/examples/CMakeLists.txt
+
+./java/examples/intro/Makefile.am
+./java/examples/intro/CMakeLists.txt
+./java/examples/intro/runExample.sh.in
+./java/examples/intro/H5_CreateAttribute.java
+./java/examples/intro/H5_CreateDataset.java
+./java/examples/intro/H5_CreateFile.java
+./java/examples/intro/H5_CreateGroup.java
+./java/examples/intro/H5_CreateGroupAbsoluteRelative.java
+./java/examples/intro/H5_CreateGroupDataset.java
+./java/examples/intro/H5_ReadWrite.java
+
+./java/examples/groups/Makefile.am
+./java/examples/groups/CMakeLists.txt
+./java/examples/groups/runExample.sh.in
+./java/examples/groups/H5Ex_G_Create.java
+./java/examples/groups/H5Ex_G_Iterate.java
+./java/examples/groups/H5Ex_G_Compact.java
+./java/examples/groups/H5Ex_G_Corder.java
+./java/examples/groups/H5Ex_G_Intermediate.java
+./java/examples/groups/H5Ex_G_Phase.java
+./java/examples/groups/H5Ex_G_Traverse.java
+./java/examples/groups/H5Ex_G_Visit.java
+./java/examples/groups/h5ex_g_iterate.h5
+./java/examples/groups/h5ex_g_visit.h5
+
+./java/examples/datasets/Makefile.am
+./java/examples/datasets/CMakeLists.txt
+./java/examples/datasets/runExample.sh.in
+./java/examples/datasets/H5Ex_D_Alloc.java
+./java/examples/datasets/H5Ex_D_Checksum.java
+./java/examples/datasets/H5Ex_D_Chunk.java
+./java/examples/datasets/H5Ex_D_Compact.java
+./java/examples/datasets/H5Ex_D_External.java
+./java/examples/datasets/H5Ex_D_FillValue.java
+./java/examples/datasets/H5Ex_D_Gzip.java
+./java/examples/datasets/H5Ex_D_Hyperslab.java
+./java/examples/datasets/H5Ex_D_ReadWrite.java
+./java/examples/datasets/H5Ex_D_Shuffle.java
+./java/examples/datasets/H5Ex_D_Szip.java
+./java/examples/datasets/H5Ex_D_UnlimitedAdd.java
+./java/examples/datasets/H5Ex_D_UnlimitedGzip.java
+./java/examples/datasets/H5Ex_D_UnlimitedMod.java
+./java/examples/datasets/H5Ex_D_Nbit.java
+./java/examples/datasets/H5Ex_D_Transform.java
+./java/examples/datasets/H5Ex_D_Sofloat.java
+./java/examples/datasets/H5Ex_D_Soint.java
+
+./java/examples/datatypes/Makefile.am
+./java/examples/datatypes/CMakeLists.txt
+./java/examples/datatypes/runExample.sh.in
+./java/examples/datatypes/H5Ex_T_Array.java
+./java/examples/datatypes/H5Ex_T_ArrayAttribute.java
+./java/examples/datatypes/H5Ex_T_Bit.java
+./java/examples/datatypes/H5Ex_T_BitAttribute.java
+./java/examples/datatypes/H5Ex_T_Commit.java
+./java/examples/datatypes/H5Ex_T_Compound.java
+./java/examples/datatypes/H5Ex_T_CompoundAttribute.java
+./java/examples/datatypes/H5Ex_T_Float.java
+./java/examples/datatypes/H5Ex_T_FloatAttribute.java
+./java/examples/datatypes/H5Ex_T_Integer.java
+./java/examples/datatypes/H5Ex_T_IntegerAttribute.java
+./java/examples/datatypes/H5Ex_T_ObjectReference.java
+./java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java
+./java/examples/datatypes/H5Ex_T_Opaque.java
+./java/examples/datatypes/H5Ex_T_OpaqueAttribute.java
+./java/examples/datatypes/H5Ex_T_String.java
+./java/examples/datatypes/H5Ex_T_StringAttribute.java
+./java/examples/datatypes/H5Ex_T_VLString.java
+
+./java/examples/testfiles/examples.intro.H5_CreateAttribute.txt
+./java/examples/testfiles/examples.intro.H5_CreateDataset.txt
+./java/examples/testfiles/examples.intro.H5_CreateFile.txt
+./java/examples/testfiles/examples.intro.H5_CreateGroup.txt
+./java/examples/testfiles/examples.intro.H5_CreateGroupAbsoluteRelative.txt
+./java/examples/testfiles/examples.intro.H5_CreateGroupDataset.txt
+./java/examples/testfiles/examples.intro.H5_ReadWrite.txt
+./java/examples/testfiles/examples.groups.H5Ex_G_Create.txt
+./java/examples/testfiles/examples.groups.H5Ex_G_Iterate.txt
+./java/examples/testfiles/examples.groups.H5Ex_G_Compact.txt
+./java/examples/testfiles/examples.groups.H5Ex_G_Corder.txt
+./java/examples/testfiles/examples.groups.H5Ex_G_Intermediate.txt
+./java/examples/testfiles/examples.groups.H5Ex_G_Phase.txt
+./java/examples/testfiles/examples.groups.H5Ex_G_Visit.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Alloc.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Checksum.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Chunk.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Compact.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_External.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_FillValue.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Gzip.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Hyperslab.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_ReadWrite.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Shuffle.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Szip.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_UnlimitedAdd.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_UnlimitedGzip.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_UnlimitedMod.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Nbit.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Transform.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Sofloat.txt
+./java/examples/testfiles/examples.datasets.H5Ex_D_Soint.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_Array.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_ArrayAttribute.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_Bit.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_BitAttribute.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_Commit.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_Compound.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_CompoundAttribute.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_Float.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_FloatAttribute.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_Integer.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_IntegerAttribute.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_ObjectReference.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_ObjectReferenceAttribute.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_Opaque.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_OpaqueAttribute.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_String.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_StringAttribute.txt
+./java/examples/testfiles/examples.datatypes.H5Ex_T_VLString.txt
+
+./java/test/Makefile.am
+./java/test/CMakeLists.txt
+./java/test/junit.sh.in
+./java/test/JUnit-interface.txt
+./java/test/JUnit-interface.ert
+./java/test/h5ex_g_iterate.orig
+./java/test/TestH5.java
+./java/test/TestH5A.java
+./java/test/TestH5Dparams.java
+./java/test/TestH5D.java
+./java/test/TestH5Dplist.java
+./java/test/TestH5E.java
+./java/test/TestH5Edefault.java
+./java/test/TestH5Eregister.java
+./java/test/TestH5Fparams.java
+./java/test/TestH5Fbasic.java
+./java/test/TestH5F.java
+./java/test/TestH5Gbasic.java
+./java/test/TestH5G.java
+./java/test/TestH5Giterate.java
+./java/test/TestH5Lparams.java
+./java/test/TestH5Lbasic.java
+./java/test/TestH5Lcreate.java
+./java/test/TestH5Oparams.java
+./java/test/TestH5Obasic.java
+./java/test/TestH5Ocreate.java
+./java/test/TestH5Ocopy.java
+./java/test/TestH5P.java
+./java/test/TestH5PData.java
+./java/test/TestH5Pfapl.java
+./java/test/TestH5Plist.java
+./java/test/TestH5Pvirtual.java
+./java/test/TestH5PL.java
+./java/test/TestH5R.java
+./java/test/TestH5Sbasic.java
+./java/test/TestH5S.java
+./java/test/TestH5Tparams.java
+./java/test/TestH5Tbasic.java
+./java/test/TestH5T.java
+./java/test/TestH5Z.java
+./java/test/TestAll.java
+
+./java/lib/hamcrest-core.jar
+./java/lib/junit.jar
+./java/lib/simplelogger.properties
+./java/lib/slf4j-api-1.7.5.jar
+./java/lib/ext/slf4j-nop-1.7.5.jar
+./java/lib/ext/slf4j-simple-1.7.5.jar
+
 # CMake-specific Files
 ./config/cmake/cacheinit.cmake
+./config/cmake/CMakeFindJavaCommon.cmake
 ./config/cmake/ConversionTests.c
 ./config/cmake/ConfigureChecks.cmake
 ./config/cmake/CPack.Info.plist.in
 ./config/cmake/CTestCustom.cmake
 ./config/cmake/FindHDF5.cmake.in
+./config/cmake/FindHDFJAVA.cmake.in
+./config/cmake/FindJNI.cmake
 ./config/cmake/H5cxx_config.h.in
 ./config/cmake/H5pubconf.h.in
 ./config/cmake/hdf5-config.cmake.in
@@ -2426,11 +2772,15 @@
 ./config/cmake/HDF5_Process_Flex_Files.cmake
 ./config/cmake/HDF5Macros.cmake
 ./config/cmake/HDF5UseFortran.cmake
+./config/cmake/jrunTest.cmake
 ./config/cmake/libhdf5.settings.cmake.in
 ./config/cmake/mccacheinit.cmake
 ./config/cmake/patch.xml
 ./config/cmake/PkgInfo.in
 ./config/cmake/README.txt.cmake.in
+./config/cmake/UseJava.cmake
+./config/cmake/UseJavaClassFilelist.cmake
+./config/cmake/UseJavaSymlinks.cmake
 ./config/cmake/userblockTest.cmake
 ./config/cmake/vfdTest.cmake
 
@@ -2544,9 +2894,6 @@
 
 # Files generated by autogen
 ./aclocal.m4
-./autom4te.cache/output.0
-./autom4te.cache/requests
-./autom4te.cache/traces.0
 ./bin/compile
 ./bin/config.guess
 ./bin/config.sub