Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop

8 files changed, 43 insertions, 61 deletions

diff --git a/bin/batch/ctestP.lsf.in.cmake b/bin/batch/ctestP.lsf.in.cmake
new file mode 100644
index 0000000..2777f39
--- /dev/null
+++ b/bin/batch/ctestP.lsf.in.cmake
@@ -0,0 +1,19 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -nnodes 1                  #number of nodes
+#BSUB -W 30                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestPerrors.txt        #stderr
+#BSUB -o ctestPoutput.txt        #stdout
+#BSUB -J hdf5_ctestP             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+##date; hostname
+##echo -n 'JobID is '; echo $LSB_JOBID
+
+cd @HDF5_BINARY_DIR@
+echo "Run parallel test command. Test output will be in build/ctestP.out"
+ctest . -R 'TEST_PAR|PH5DIFF|PERFORM' -E t_cache_image -C Release -T test >& ctestP.out
+
+echo "Done running ctest parallel command."
diff --git a/bin/batch/sbatch_ctestP.sl b/bin/batch/ctestP.sl.in.cmake
index e967dce..230a642 100644
--- a/bin/batch/sbatch_ctestP.sl
+++ b/bin/batch/ctestP.sl.in.cmake
@@ -7,8 +7,7 @@
 #SBATCH --export=ALL
 #SBATCH --job-name=h5_ctestS
 
-
-cd build
+cd @HDF5_BINARY_DIR@
 CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
 
 echo "Run $CMD. Test output will be in build/ctestP.out"
diff --git a/bin/batch/ctestS.lsf.in.cmake b/bin/batch/ctestS.lsf.in.cmake
new file mode 100644
index 0000000..5692574
--- /dev/null
+++ b/bin/batch/ctestS.lsf.in.cmake
@@ -0,0 +1,18 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -nnodes 1                  #number of nodes
+#BSUB -W 29                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestSerrors.txt        #stderr
+#BSUB -o ctestSoutput.txt        #stdout
+#BSUB -J hdf5_ctestS             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+cd @HDF5_BINARY_DIR@
+echo "Run command. Test output will be in build/ctestS.out"
+ctest . -E 'TEST_PAR|H5DIFF|PERFORM' -C Release -j 32 -T test >& ctestS.out
+
+##$CMD  >& ctestS.out
+echo "Done running command."
+
diff --git a/bin/batch/sbatch_ctestS.sl b/bin/batch/ctestS.sl.in.cmake
index a103356..9802e13 100644
--- a/bin/batch/sbatch_ctestS.sl
+++ b/bin/batch/ctestS.sl.in.cmake
@@ -7,8 +7,7 @@
 #SBATCH --export=ALL
 #SBATCH --job-name=h5_ctestS
 
-
-cd build
+cd @HDF5_BINARY_DIR@
 CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
 
 echo "Run $CMD. Test output will be in build/ctestS.out"
diff --git a/bin/batch/knl_ctestP.sl b/bin/batch/knl_ctestP.sl.in.cmake
index 3a03fe2..687804b 100644
--- a/bin/batch/knl_ctestP.sl
+++ b/bin/batch/knl_ctestP.sl.in.cmake
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-#SBATCH -p knl -C quad,flat
+#SBATCH -C knl,quad,cache
 #SBATCH --nodes=1
 #SBATCH -t 00:30:00
 #SBATCH --mail-type=BEGIN,END,FAIL
@@ -8,7 +8,7 @@
 #SBATCH --export=ALL
 #SBATCH --job-name=h5_ctestS
 
-cd build
+cd @HDF5_BINARY_DIR@
 #run parallel tests except t_cache_image test
 CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
 
diff --git a/bin/batch/knl_ctestS.sl b/bin/batch/knl_ctestS.sl.in.cmake
index 5b77c5b..de1335c 100644
--- a/bin/batch/knl_ctestS.sl
+++ b/bin/batch/knl_ctestS.sl.in.cmake
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-#SBATCH -p knl -C quad,flat
+#SBATCH -C knl,quad,cache
 #SBATCH --nodes=1
 #SBATCH -t 00:30:00
 #SBATCH --mail-type=BEGIN,END,FAIL
@@ -8,7 +8,7 @@
 #SBATCH --export=ALL
 #SBATCH --job-name=h5_ctestS
 
-cd build
+cd @HDF5_BINARY_DIR@
 CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
 
 echo "Run $CMD. Test output will be in build/ctestS.out"
diff --git a/bin/batch/knl_ctestSP.sl b/bin/batch/knl_ctestSP.sl
deleted file mode 100644
index 56da347..0000000
--- a/bin/batch/knl_ctestSP.sl
+++ /dev/null
@@ -1,28 +0,0 @@
-#!/bin/bash
-
-#SBATCH -p knl -C quad,flat
-#SBATCH --nodes=1
-#SBATCH -t 01:00:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
-
-module load cmake
-module load craype-hugepages4M
-
-cd build
-CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
-
-echo "Run $CMD. Test output will be in build/ctestS.out"
-$CMD  >& ctestS.out
-echo "Done running $CMD"
-
-
-#run parallel tests except t_cache_image test
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
-
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
-
diff --git a/bin/batch/sbatch_ctestSP.sl b/bin/batch/sbatch_ctestSP.sl
deleted file mode 100644
index 5d79d9b..0000000
--- a/bin/batch/sbatch_ctestSP.sl
+++ /dev/null
@@ -1,25 +0,0 @@
-#!/bin/bash
-
-#SBATCH --nodes=1
-#SBATCH -t 01:00:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
-
-
-cd build
-CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
-
-echo "Run $CMD. Test output will be in build/ctestS.out"
-$CMD  >& ctestS.out
-echo "Done running $CMD"
-
-
-#run parallel tests except t_cache_image test
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
-
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
-