VFD SWMR: Merges from develop (#1670)

* Cleans up SWMR test scripts (both legacy and VFD)

* Brings over format source changes for Java

* Normalization of HL, Fortran, C++, Java w/ develop

* Removes the STATIC flavor of FUNC_ENTER macros (#1622)

* Removes the STATIC flavor of FUNC_ENTER macros

* Remove H5_NO_ALIGNMENT_RESTRICTIONS (#1426)

* Do not conditionally compile code that uses a pointer dereference
and assignment to copy a potentially unaligned variable to aligned
automatic storage, or vice versa.  Instead, always use naked `memcpy(3)`s.
Disassembling the generated code reveals that the `memcpy(3)`s optimize
(`-O3`) to a single `mov` instruction for x86_64, which is not strict
about alignment.

This change reduces the size of code and scripts by 143 lines, eases
our way to cross-compilation, and avoids invoking undefined behavior.

* Committing clang-format changes

* Per discussion, use HD and add comments.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes unused definitions from module headers (#1624)

* Misc stuff from develop (includes some parallel things)

* Brings over SWMR test quiet mode changes from develop

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

6 files changed, 7 insertions, 6 deletions

diff --git a/bin/README b/bin/README
deleted file mode 100644
index 1c77043..0000000
--- a/bin/README
+++ /dev/null
@@ -1,2 +0,0 @@
-The daily tests run copies of some of the scripts in this directory from another repository, notably snapshot and runtest.  The copies in this directory should work, but are not used in daily tests, though they should be tested occasionally.  
-
diff --git a/bin/format_source b/bin/format_source
index dce34e5..227d22a 100755
--- a/bin/format_source
+++ b/bin/format_source
@@ -20,7 +20,7 @@ find . \( -type d -path ./config -prune -and -not -path ./config \) \
         -or -name H5version.h \
         -or -name H5overflow.h \
         \) \) \
-    -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp \) \) \
+    -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp -or -iname *.java \) \) \
     | xargs clang-format -style=file -i -fallback-style=none
 
 exit 0
diff --git a/bin/format_source_patch b/bin/format_source_patch
index 439baf2..2e01455 100755
--- a/bin/format_source_patch
+++ b/bin/format_source_patch
@@ -20,7 +20,7 @@ find . \( -type d -path ./config -prune -and -not -path ./config \) \
         -or -name H5version.h \
         -or -name H5overflow.h \
         \) \) \
-    -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp \) \) \
+    -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp -or -iname *.java \) \) \
     | xargs clang-format -style=file -i -fallback-style=none
 
 git diff > clang_format.patch
diff --git a/bin/h5cc.in b/bin/h5cc.in
index 6835b79..966bb40 100644
--- a/bin/h5cc.in
+++ b/bin/h5cc.in
@@ -40,7 +40,7 @@ HL="@HL@"
 ##    $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS   ##
 ##    $LIBS $clibpath $link_objs $link_args $shared_link                  ##
 ##                                                                        ##
-## These settings can be overridden by setting HDF5_CFLAGS,                ##
+## These settings can be overridden by setting HDF5_CFLAGS,               ##
 ## HDF5_CPPFLAGS, HDF5_LDFLAGS, or HDF5_LIBS in the environment.          ##
 ##                                                                        ##
 ############################################################################
diff --git a/bin/make_vers b/bin/make_vers
index 3631d3c..f1399a4 100755
--- a/bin/make_vers
+++ b/bin/make_vers
@@ -6,7 +6,7 @@ use warnings;
 # (The max_idx parameter is the only thing that needs to be changed when adding
 #       support for a new major release.  If support for a prior major release
 #       is added (like support for 1.4, etc), the min_sup_idx parameter will
-#       need to be decremented. - QAK)
+#       need to be decremented.)
 
 # Max. library "index" (0 = v1.0, 1 = 1.2, 2 = 1.4, 3 = 1.6, 4 = 1.8, 5 = 1.10, 6 = 1.12, 7 = 1.14, etc)
 $max_idx = 7;
diff --git a/bin/restore.sh b/bin/restore.sh
index 47dde11..0597572 100755
--- a/bin/restore.sh
+++ b/bin/restore.sh
@@ -48,6 +48,9 @@ rm -f bin/missing
 rm -f bin/test-driver
 rm -f bin/depcomp
 
+echo "Remove files generated by autoheader"
+rm -f src/H5config.h.in
+
 echo "Remove files generated by bin/make_err"
 rm -f src/H5Epubgen.h
 rm -f src/H5Einit.h