Merge branch 'develop' into parallel_vds_developinactive/parallel_vds_develop

19 files changed, 1385 insertions, 181 deletions

diff --git a/bin/Makefile.am b/bin/Makefile.am
new file mode 100644
index 0000000..a39b695
--- /dev/null
+++ b/bin/Makefile.am
@@ -0,0 +1,57 @@
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src directory
+AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# These are our main targets
+bin_SCRIPTS=h5redeploy
+
+# Tell automake to clean h5redeploy script
+CLEANFILES=h5redeploy
+
+# These were generated by configure.  Remove them only when distclean.
+DISTCLEANFILES=h5cc
+
+# All programs rely on hdf5 library and h5tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+# How to build h5redeploy script
+h5redeploy: h5redeploy.in
+	@cp $(srcdir)/$@.in $@
+
+# h5cc needs custom install and uninstall rules, since it may be
+# named h5pcc if hdf5 is being built in parallel mode.
+if BUILD_PARALLEL_CONDITIONAL
+  H5CC_NAME=h5pcc
+else
+  H5CC_NAME=h5cc
+endif
+
+$(DESTDIR)$(bindir):
+	echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
+	$(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1;
+
+install-exec-local: $(DESTDIR)$(bindir)
+	@$(INSTALL) h5cc $(DESTDIR)$(bindir)/$(H5CC_NAME)
+uninstall-local:
+	@$(RM) $(DESTDIR)$(bindir)/$(H5CC_NAME)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/bin/batch/cori_ctestP.sl.in.cmake b/bin/batch/cori_ctestP.sl.in.cmake
deleted file mode 100644
index 6aa4916..0000000
--- a/bin/batch/cori_ctestP.sl.in.cmake
+++ /dev/null
@@ -1,17 +0,0 @@
-#!/bin/bash
-
-#SBATCH -C haswell
-#SBATCH --nodes=1
-#SBATCH -t 00:30:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestP
-
-cd @HDF5_BINARY_DIR@
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM|ph5example -E t_cache_image -C Release -T test"
-
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
-
diff --git a/bin/batch/cori_ctestS.sl.in.cmake b/bin/batch/cori_ctestS.sl.in.cmake
deleted file mode 100644
index cf68826..0000000
--- a/bin/batch/cori_ctestS.sl.in.cmake
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/bin/bash
-
-#SBATCH -C haswell
-#SBATCH --nodes=1
-#SBATCH -t 00:30:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
-
-cd @HDF5_BINARY_DIR@
-CMD="ctest . -E TEST_PAR|PH5DIFF|PERFORM|ph5example -C Release -j 32 -T test"
-
-echo "Run $CMD. Test output will be in build/ctestS.out"
-$CMD  >& ctestS.out
-echo "Done running $CMD"
diff --git a/bin/batch/cori_knl_ctestP.sl.in.cmake b/bin/batch/cori_knl_ctestP.sl.in.cmake
deleted file mode 100644
index 90dd52a..0000000
--- a/bin/batch/cori_knl_ctestP.sl.in.cmake
+++ /dev/null
@@ -1,17 +0,0 @@
-#!/bin/bash
-
-#SBATCH -C knl,quad,cache
-#SBATCH --nodes=1
-#SBATCH -t 00:30:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestP
-
-cd @HDF5_BINARY_DIR@
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM|ph5example -E t_cache_image -C Release -T test"
-
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
-
diff --git a/bin/batch/cori_knl_ctestS.sl.in.cmake b/bin/batch/cori_knl_ctestS.sl.in.cmake
deleted file mode 100644
index 7db4483..0000000
--- a/bin/batch/cori_knl_ctestS.sl.in.cmake
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/bin/bash
-
-#SBATCH -C knl,quad, cache
-#SBATCH --nodes=1
-#SBATCH -t 00:30:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
-
-cd @HDF5_BINARY_DIR@
-CMD="ctest . -E TEST_PAR|PH5DIFF|PERFORM|ph5example -C Release -j 32 -T test"
-
-echo "Run $CMD. Test output will be in build/ctestS.out"
-$CMD  >& ctestS.out
-echo "Done running $CMD"
diff --git a/bin/batch/ctest.qsub.in.cmake b/bin/batch/ctest.qsub.in.cmake
new file mode 100755
index 0000000..702fca7
--- /dev/null
+++ b/bin/batch/ctest.qsub.in.cmake
@@ -0,0 +1,21 @@
+#!/bin/bash -l
+if [ $# -gt 0 ]; then
+    SUMMARY_FILE=$1
+fi
+ACCOUNT_ID=@ACCOUNT_ID@
+
+echo "Run parallel test command. Test output will be in build/${SUMMARY_FILE}"
+CTEST_CMD=`which ctest`
+
+#SKIPTESTS <<KEYWORD:script inserts list of skips tests here -- don't remove>>
+
+cd @HDF5_BINARY_DIR@
+if [[ $SUMMARY_FILE == *"ctestS"* ]]; then
+  CMD="${CTEST_CMD} . -E MPI_TEST_ -C Release -j 32 -T test"
+else
+  CMD="${CTEST_CMD} . -R MPI_TEST_ ${SKIP_TESTS} -C Release -T test"
+fi
+
+qsub -t 60 -n 1 -q debug-flat-quad -A ${ACCOUNT_ID} ${CMD} >& ${SUMMARY_FILE}
+
+echo "Done running ctest parallel command."
diff --git a/bin/batch/ctestP.lsf.in.cmake b/bin/batch/ctestP.lsf.in.cmake
index 2777f39..3fdd5ce 100644
--- a/bin/batch/ctestP.lsf.in.cmake
+++ b/bin/batch/ctestP.lsf.in.cmake
@@ -14,6 +14,6 @@
 
 cd @HDF5_BINARY_DIR@
 echo "Run parallel test command. Test output will be in build/ctestP.out"
-ctest . -R 'TEST_PAR|PH5DIFF|PERFORM' -E t_cache_image -C Release -T test >& ctestP.out
+ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
 
 echo "Done running ctest parallel command."
diff --git a/bin/batch/ctestP.sl.in.cmake b/bin/batch/ctestP.sl.in.cmake
index 9fed14d..6399de7 100644
--- a/bin/batch/ctestP.sl.in.cmake
+++ b/bin/batch/ctestP.sl.in.cmake
@@ -8,9 +8,7 @@
 #SBATCH --job-name=h5_ctestP
 
 cd @HDF5_BINARY_DIR@
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM|ph5example -E t_cache_image -C Release -T test"
+ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
 
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
+echo "Done running ctestP.sl" 
 
diff --git a/bin/batch/ctestS.lsf.in.cmake b/bin/batch/ctestS.lsf.in.cmake
index 7ef5af5..a01d39b 100644
--- a/bin/batch/ctestS.lsf.in.cmake
+++ b/bin/batch/ctestS.lsf.in.cmake
@@ -11,7 +11,7 @@
 
 cd @HDF5_BINARY_DIR@
 echo "Run command. Test output will be in build/ctestS.out"
-ctest . -E 'TEST_PAR|PH5DIFF|PERFORM' -C Release -j 32 -T test >& ctestS.out
+ctest . -E MPI_TEST_ -C Release -j 32 -T test >& ctestS.out
 
 ##$CMD  >& ctestS.out
 echo "Done running command."
diff --git a/bin/batch/ctestS.sl.in.cmake b/bin/batch/ctestS.sl.in.cmake
index 98c1bcd..4f96bb9 100644
--- a/bin/batch/ctestS.sl.in.cmake
+++ b/bin/batch/ctestS.sl.in.cmake
@@ -8,7 +8,7 @@
 #SBATCH --job-name=h5_ctestS
 
 cd @HDF5_BINARY_DIR@
-CMD="ctest . -E TEST_PAR|PH5DIFF|PERFORM|ph5example -C Release -j 32 -T test"
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
 
 echo "Run $CMD. Test output will be in build/ctestS.out"
 $CMD  >& ctestS.out
diff --git a/bin/batch/knl_ctestP.sl.in.cmake b/bin/batch/knl_ctestP.sl.in.cmake
index 5c7c83f..f985fbb 100644
--- a/bin/batch/knl_ctestP.sl.in.cmake
+++ b/bin/batch/knl_ctestP.sl.in.cmake
@@ -6,13 +6,11 @@
 #SBATCH --mail-type=BEGIN,END,FAIL
 ##SBATCH --mail-user=<username>@sandia.gov
 #SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
+#SBATCH --job-name=h5_ctestP
 
 cd @HDF5_BINARY_DIR@
 #run parallel tests except t_cache_image test
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM|ph5example -E t_cache_image -C Release -T test"
+ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
 
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
 echo "Done running $CMD"
 
diff --git a/bin/batch/knl_ctestS.sl.in.cmake b/bin/batch/knl_ctestS.sl.in.cmake
index 0dae31f..af6353b 100644
--- a/bin/batch/knl_ctestS.sl.in.cmake
+++ b/bin/batch/knl_ctestS.sl.in.cmake
@@ -9,7 +9,7 @@
 #SBATCH --job-name=h5_ctestS
 
 cd @HDF5_BINARY_DIR@
-CMD="ctest . -E TEST_PAR|PH5DIFF|PERFORM|ph5example -C Release -j 32 -T test"
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
 
 echo "Run $CMD. Test output will be in build/ctestS.out"
 $CMD  >& ctestS.out
diff --git a/bin/batch/ray_ctestP.lsf.in.cmake b/bin/batch/ray_ctestP.lsf.in.cmake
index 6b5316a..7067a65 100644
--- a/bin/batch/ray_ctestP.lsf.in.cmake
+++ b/bin/batch/ray_ctestP.lsf.in.cmake
@@ -15,6 +15,6 @@
 
 cd @HDF5_BINARY_DIR@
 echo "Run parallel test command. Test output will be in build/ctestP.out"
-ctest . -R 'TEST_PAR|PH5DIFF|PERFORM|ph5example' -E t_cache_image -C Release -T test >& ctestP.out
+ctest . -R 'MPI_TEST_' -C Release -T test >& ctestP.out
 
 echo "Done running ctest parallel command."
diff --git a/bin/batch/ray_ctestS.lsf.in.cmake b/bin/batch/ray_ctestS.lsf.in.cmake
index d23a513..da20438 100644
--- a/bin/batch/ray_ctestS.lsf.in.cmake
+++ b/bin/batch/ray_ctestS.lsf.in.cmake
@@ -11,7 +11,7 @@
 
 cd @HDF5_BINARY_DIR@
 echo "Run command. Test output will be in build/ctestS.out"
-ctest . -E 'TEST_PAR|PH5DIFF|PERFORM|ph5example' -C Release -j 32 -T test >& ctestS.out
+ctest . -E 'MPI_TEST_' -C Release -j 32 -T test >& ctestS.out
 
 ##$CMD  >& ctestS.out
 echo "Done running command."
diff --git a/bin/checkposix b/bin/checkposix
index 7ab741c..30128e3 100755
--- a/bin/checkposix
+++ b/bin/checkposix
@@ -13,101 +13,165 @@ require 5.003;
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-# Robb Matzke, matzke@llnl.gov
-# 30 Aug 1997
+# Dana Robinson
+# Spring 2019
+# (Original by Robb Matzke)
 #
-# Purpose: Given the names of C source files this script will print the
-#	   file name, line number, and function name of any function that
-#	   doesn't begin with the letter `h' or `H' as stipulated by the
-#	   HDF5 programming style guide.
+# Purpose:  Given the names of C source files this script will print the
+#           file name, line number, and function name of any function that
+#           doesn't begin with the letter 'h' or 'H' as stipulated by the
+#           HDF5 programming style guide.
 #
-#	   Emacs users can run this script as the compile command and
-#	   use `next-error' (usually bound to M-`) to find each name
-#	   violation.
-
-if(<>) {
-    if($ARGV =~ /\//) {
-        ($filename) = ($ARGV =~ /^.*\/([A-Za-z0-9_]*)\.c$/);
-    } else {
-        ($filename) = ($ARGV =~ /([A-Za-z0-9_]*)\.c$/);
+#           Emacs users can run this script as the compile command and
+#           use 'next-error' (usually bound to M-`) to find each name
+#           violation.
+
+use File::Basename;
+
+# Loop over all files passed to the function
+foreach $arg (@ARGV) {
+
+    # Get the filename from the path
+    $filename = fileparse($arg);
+
+    # Skip files that don't include H5private.h
+    # H5system. has to be inspected by hand since it wraps POSIX files
+    #
+    # H5detect and H5make_libsettings are created before the library exists
+    # so calls that link to function replacements won't work. We'll ignore
+    # it here.
+    #
+    # If a user specifies one file, process it no matter what so people
+    # can inspect files we normally skip (like H5system.c).
+    if($#ARGV gt 0 and $filename =~ /H5FDmulti|H5FDstdio|H5VLpassthru|H5system|H5detect|H5make_libsettings/) {
+        print "$filename is exempt from using Standard library macro wrappers\n";
+        next;
     }
 
-    if($filename =~ /H5FDmulti|H5FDstdio/) {
-        print "$ARGV is exempt from using Standard library macro wrappers\n";
-    } else {
-        while (<>) {
-
-           # Get rid of comments by removing the inside part.
-           s|/\*.*?\*/||g;
-           if ($in_comment) {
-              if (/\*\//) {
-                 s|.*?\*/||;
-                 $in_comment = 0;
-              } else {
-                 $_="\n";
-              }
-           } elsif (m|/\*|) {
-              s|/\*.*||;
-              $in_comment = 1;
-           }
-
-           # Get rid of string constants if they begin and end on this line.
-           s/([\'\"])([^\1]|\\\1)*?\1/$1$1/g;
-
-           # Get rid of preprocessor directives
-           s/^\#.*//;
-
-           # Skip callbacks invoked as methods in a struct
-           next if $_ =~ /\b(\)?->|\.)\(?([a-z_A-Z]\w*)\s*\(/;
-
-           # Now find all function calls on this line which don't start with 'H'
-           while (($name)=/\b([a-z_A-GI-Z]\w*)\s*\(/) {
-              $_ = $';
+    # Open the file
+    open(my $fh, "<", $arg) or do {
+        warn "NOTE: Unable to open $arg: !$\n";
+        next;
+    };
+
+    # Loop over all lines in the file to find undecorated functions
+    while (<$fh>) {
+
+        # Get rid of comments by removing the inside part.
+        s|/\*.*?\*/||g;
+        if ($in_comment) {
+            if (/\*\//) {
+                s|.*?\*/||;
+                $in_comment = 0;
+            } else {
+                $_="\n";
+            }
+        } elsif (m|/\*|) {
+            s|/\*.*||;
+            $in_comment = 1;
+        }
+
+        # Get rid of string constants if they begin and end on this line.
+        s/([\'\"])([^\1]|\\\1)*?\1/$1$1/g;
+
+        # Get rid of preprocessor directives
+        s/^\#.*//;
+
+        # Skip callbacks invoked as methods in a struct
+        next if $_ =~ /\b(\)?]?->|\.)\(?([a-z_A-Z]\w*)\s*\(/;
+
+        # Now find all function calls on this line which don't start with 'H'
+        while (($name)=/\b([a-z_A-GI-Z]\w*)\s*\(/) {
+            $_ = $';
               
-              # Ignore C statements that look sort of like function
-              # calls.
-              next if $name =~ /^(if|for|offsetof|return|sizeof|switch|while|void)$/;
-
-              # Ignore things that get misdetected because of the simplified
-              # parsing that takes place here.
-              next if $name =~ /^(int|herr_t|_term_interface)$/;
-
-              # These are really HDF5 functions/macros even though they don't
-              # start with `h' or `H'.
-              next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT)?(_NOFUNC|_TAG)?$/;
-              next if $name =~ /^(BEGIN|END)_FUNC$/;
-              next if $name =~ /^U?INT(8|16|32|64)(ENCODE|DECODE)(_VAR)?$/;
-              next if $name =~ /^CI_(PRINT_STATS|INC_SRC|INC_DST)$/;
-              next if $name =~ /^(ABS|ADDR_OVERFLOW|ALL_MEMBERS|BOUND|CONSTR|DETECT_[I|F|M]|DOWN)$/;
-              next if $name =~ /^(MIN3?|MAX3?|NELMTS|POWER_OF_TWO|REGION_OVERFLOW)$/;
-              next if $name =~ /^(UNIQUE_MEMBERS)$/;
-              next if $name =~ /^addr_defined$/;
-
-              # These functions/macros are exempt.
-              next if $name =~ /^(main|[fs]?printf|va_(start|arg|end))$/;
-
-              # These are Windows system calls. Ignore them.
-              next if $name =~ /^(_get_osfhandle|GetFileInformationByHandle|SetFilePointer|GetLastError|SetEndOfFile)$/;
-              next if $name =~ /^(FindNextFile|FindClose|_tzset|Wgettimeofday|GetSystemTimeAsFileTime|Wgetlogin|GetUserName)$/;
-
-              # These are MPI function calls. Ignore them.
-              next if $name =~ /^(MPI_|MPE_)/;
-
-              # These are POSIX threads function calls. Ignore them.
-              next if $name =~ /^pthread_/;
-
-              # These are Windows threads function calls. Ignore them.
-              next if $name =~ /^(_beginthread|(Initialize|Enter|Leave)CriticalSection|TlsAlloc)$/;
-
-              # These are zlib & szlib function calls. Ignore them.
-              next if $name =~ /^(inflate|SZ_)/;
-              next if $name =~ /^compress2$/;
-
-              print "$ARGV:$.: $name\n";
-           }
-
-        } continue {
-           close ARGV if eof;       # reset line number
+            # Ignore C statements that look sort of like function
+            # calls.
+            next if $name =~ /^(if|for|offsetof|return|sizeof|switch|while|void)$/;
+
+            # Ignore things that get misdetected because of the simplified
+            # parsing that takes place here.
+            next if $name =~ /^(int|herr_t|_term_interface|_term_package)$/;
+
+            # These are really HDF5 functions/macros even though they don't
+            # start with `h' or `H'.
+            next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT)?(_NOFUNC|_TAG)?$/;
+            next if $name =~ /^(BEGIN|END)_FUNC$/;
+            next if $name =~ /^U?INT(8|16|32|64)(ENCODE|DECODE)(_VAR)?$/;
+            next if $name =~ /^CI_(PRINT_STATS|INC_SRC|INC_DST)$/;
+            next if $name =~ /^(ABS|ADDR_OVERFLOW|ALL_MEMBERS|BOUND|CONSTR|DETECT_[I|F|M]|DOWN)$/;
+            next if $name =~ /^(MIN3?|MAX3?|NELMTS|POWER_OF_TWO|REGION_OVERFLOW)$/;
+            next if $name =~ /^(UNIQUE_MEMBERS|S_ISDIR)$/;
+            next if $name =~ /^addr_defined$/;
+
+            # These functions/macros are exempt.
+            # op, cb, and OP are often spuriously flagged so ignore them.
+            next if $name =~ /^(main|op|cb|OP)$/;
+
+            # This often appears in preprocessor lines that span multiple lines
+            next if $name =~ /^(defined)$/;
+
+            # These are Windows system calls. Ignore them.
+            next if $name =~ /^(_get_osfhandle|GetFileInformationByHandle|SetFilePointer|GetLastError|SetEndOfFile)$/;
+            next if $name =~ /^(FindNextFile|FindClose|_tzset|Wgettimeofday|GetSystemTimeAsFileTime|Wgetlogin|GetUserName)$/;
+            next if $name =~ /^(DeleteCriticalSection|TlsFree|TlsGetValue|CreateThread)$/;
+            next if $name =~ /^(ExpandEnvironmentStringsA|LockFileEx|UnlockFileEx)$/;
+            next if $name =~ /^(DllMain|LocalAlloc|LocalFree)$/;
+            next if $name =~ /^(FindFirstFileA|FindNextFileA)$/;
+            next if $name =~ /^(_beginthread|(Initialize|Enter|Leave)CriticalSection|TlsAlloc)$/;
+
+            # These are MPI function calls. Ignore them.
+            next if $name =~ /^(MPI_|MPE_)/;
+
+            # These are POSIX threads function calls. Ignore them.
+            next if $name =~ /^pthread_/;
+
+            # These are zlib & szlib function calls. Ignore them.
+            next if $name =~ /^(inflate|SZ_)/;
+            next if $name =~ /^compress2$/;
+
+            # These is an H5Dfill function. Ignore it in this file.
+            if($filename =~ /H5Dfill/) {
+                next if $name =~ /^(alloc_func)$/;
+            }
+
+            # These are H5Zscaleoffset functions. Ignore them in this file.
+            if($filename =~ /H5Zscaleoffset/) {
+                next if $name =~ /^(pow_fun|round_fun|abs_fun|lround_fun|llround_fun)$/;
+            }
+
+            # TESTING (not comprehensive - just noise reduction)
+            
+            # Test macros and functions (testhdf5.h)
+            next if $name =~ /^(AddTest|TestErrPrintf|TestSummary|TestCleanup|TestShutdown)$/;
+            next if $name =~ /^(CHECK|CHECK_PTR|CHECK_PTR_NULL|CHECK_PTR_EQ|CHECK_I)$/;
+            next if $name =~ /^(VERIFY|VERIFY_STR|VERIFY|TYPE|MESSAGE|ERROR)$/;
+
+            # Test macros and functions (h5test.h)
+            next if $name =~ /^(TESTING|PASSED|SKIPPED|FAIL_PUTS_ERROR|FAIL_STACK_ERROR|TEST_ERROR)$/;
+            next if $name =~ /^(GetTestExpress)$/;
+
+            # Ignore functions that start with test_ or check_
+            next if $name =~ /^test_/;
+            next if $name =~ /^check_/;
+
+            # Ignore functions that start with h5_
+            next if $name =~ /^h5_/;
+
+            # Ignore usage functions
+            next if $name =~ /^usage$/;
+
+            print "$filename:$.: $name\n";
         }
+
     }
+
+    # Close the file
+    close($fh);
+}
+
+if($#ARGV gt 0) {
+    print "\n";
+    print "NOTE:\n";
+    print "If any files were skipped due to being exempt, you can inspect them manually\n";
+    print "by using this script on them one at a time, which will always process the file.\n";
 }
diff --git a/bin/h5cc.in b/bin/h5cc.in
new file mode 100644
index 0000000..9c4e3ca
--- /dev/null
+++ b/bin/h5cc.in
@@ -0,0 +1,399 @@
+#! /bin/sh
+##
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+##
+
+# This tool is adapted from the mpicc command of the MPICH Software.
+
+############################################################################
+##                                                                        ##
+## Things You May Have to Modify:                                         ##
+##                                                                        ##
+## If the following paths don't point to the place were HDF5 is installed ##
+## on your system (i.e., you received a binary distribution or moved the  ##
+## files from the originally installed directory to another directory)    ##
+## then modify them accordingly to represent the new paths.               ##
+##                                                                        ##
+############################################################################
+prefix="@prefix@"
+exec_prefix="@exec_prefix@"
+libdir="@libdir@"
+includedir="@includedir@"
+HL="@HL@"
+
+############################################################################
+##                                                                        ##
+## Things You Can Modify to Override HDF5 Library Build Components:       ##
+##                                                                        ##
+## (Advanced usage - know what you're doing - you're on your own here.)   ##
+## The four variables below can be used to insert paths and flags in      ##
+## CPPFLAGS, CFLAGS, LDFLAGS, or LIBS in the h5cc compile line:           ##
+##    $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS   ##
+##    $LIBS $clibpath $link_objs $link_args $shared_link                  ##
+##                                                                        ##
+## These settings can be overriden by setting HDF5_CFLAGS,                ##
+## HDF5_CPPFLAGS, HDF5_LDFLAGS, or HDF5_LIBS in the environment.          ##
+##                                                                        ##
+############################################################################
+CFLAGSBASE=""
+CPPFLAGSBASE=""
+LDFLAGSBASE=""
+LIBSBASE=""
+
+############################################################################
+##                                                                        ##
+## You shouldn't have to modify anything below this line.                 ##
+##                                                                        ##
+############################################################################
+
+# Constants definitions
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+host_os="@host_os@"
+
+prog_name="`basename $0`"
+
+allargs=""
+compile_args=""
+libraries=""
+link_args=""
+link_objs=""
+clibpath=""
+
+do_link="yes"
+do_compile="no"
+dash_o="no"
+dash_c="no"
+get_output_file="no"
+
+SHOW="eval"
+CCBASE="@CC@"
+CLINKERBASE="@CC@"
+
+# CFLAGS, CPPFLAGS and LDFLAGS are reserved for use by the script user.
+# FLAGS brought from the hdf5 build are put in H5BLD_*FLAGS.
+
+# User's CPPFLAGS and CFLAGS come after their H5BLD counterparts.  User's 
+# LDFLAGS come just before clibpath, user's LIBS come after $link_objs and 
+# before the hdf5 libraries in $link_args, followed by any external library 
+# paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in 
+# from the hdf5 build. The order of the flags is intended to give precedence
+# to the user's flags.
+H5BLD_CFLAGS="@AM_CFLAGS@ @CFLAGS@"
+H5BLD_CPPFLAGS="@AM_CPPFLAGS@ @CPPFLAGS@"
+H5BLD_LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@"
+H5BLD_LIBS="@LIBS@"
+
+CC="${HDF5_CC:-$CCBASE}"
+CLINKER="${HDF5_CLINKER:-$CLINKERBASE}"
+CFLAGS="${HDF5_CFLAGS:-$CFLAGSBASE}"
+CPPFLAGS="${HDF5_CPPFLAGS:-$CPPFLAGSBASE}"
+LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
+LIBS="${HDF5_LIBS:-$LIBSBASE}"
+
+# If a static library is available, the default will be to use it.  If the only
+# available library is shared, it will be used by default.  The user can 
+# override either default, although choosing an unavailable library will result
+# in link errors.  
+STATIC_AVAILABLE="@enable_static@"
+if test "${STATIC_AVAILABLE}" = "yes"; then
+  USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
+else
+  USE_SHARED_LIB="${HDF5_USE_SHLIB:-yes}"
+fi
+
+
+usage() {
+  # A wonderfully informative "usage" message.
+  echo "usage: $prog_name [OPTIONS] <compile line>"
+  echo "  OPTIONS:"
+  echo "    -help        This help message."
+  echo "    -echo        Show all the shell commands executed"
+  echo "    -prefix=DIR  Prefix directory to find HDF5 lib/ and include/"
+  echo "                   subdirectories [default: $prefix]"
+  # A wonderfully informative "usage" message.
+  echo "usage: $prog_name [OPTIONS] <compile line>"
+  echo "  OPTIONS:"
+  echo "    -help        This help message."
+  echo "    -echo        Show all the shell commands executed"
+  echo "    -prefix=DIR  Prefix directory to find HDF5 lib/ and include/"
+  echo "                   subdirectories [default: $prefix]"
+  echo "    -show        Show the commands without executing them"
+  echo "    -showconfig  Show the HDF5 library configuration summary"
+  echo "    -shlib       Compile with shared HDF5 libraries [default for hdf5 built"
+  echo "                                                     without static libraries]"
+  echo "    -noshlib     Compile with static HDF5 libraries [default for hdf5 built"
+  echo "                                                     with static libraries]"
+  echo " "
+  echo "  <compile line>  - the normal compile line options for your compiler."
+  echo "                    $prog_name uses the same compiler you used to compile"
+  echo "                    HDF5. Check with your compiler's man pages for more"
+  echo "                    information on which options are needed."
+  echo " "
+  echo " You can override the compiler, linker, and whether or not to use static"
+  echo " or shared libraries to compile your program by setting the following"
+  echo " environment variables accordingly:"
+  echo " "
+  echo "   HDF5_CC                  -  use a different C compiler"
+  echo "   HDF5_CLINKER             -  use a different linker"
+  echo "   HDF5_USE_SHLIB=[yes|no]  -  use shared or static version of the HDF5 library"
+  echo "                                 [default: no except when built with only" 
+  echo "                                           shared libraries]"
+  echo " "
+  echo " You can also add or change paths and flags to the compile line using"
+  echo " the following environment varibles or by assigning them to their counterparts"
+  echo " in the 'Things You Can Modify to Override...'" section of $prog_name
+  echo " "
+  echo "  Variable              Current value to be replaced"
+  echo "  HDF5_CPPFLAGS         \"$CPPFLAGSBASE\""
+  echo "  HDF5_CFLAGS           \"$CFLAGSBASE\""
+  echo "  HDF5_LDFLAGS          \"$LDFLAGSBASE\""
+  echo "  HDF5_LIBS             \"$LIBSBASE\""
+  echo " "
+  echo " Note that adding library paths to HDF5_LDFLAGS where another hdf5 version"
+  echo " is located may link your program with that other hdf5 library version."
+  echo " "
+  exit $EXIT_FAILURE
+}
+
+# Show the configuration summary of the library recorded in the
+# libhdf5.settings file reside in the lib directory.
+showconfigure()
+{
+  cat ${libdir}/libhdf5.settings
+  status=$?
+}
+
+# Main
+status=$EXIT_SUCCESS
+
+if test "$#" = "0"; then
+  # No parameters specified, issue usage statement and exit.
+  usage
+fi
+
+case "$CC" in
+  gcc)
+    kind="gcc"
+    ;;
+  mpicc|mpcc|mpicc_r)
+    # Is this gcc masquarading as an MPI compiler?
+    if test "`${CC} -v 2>&1 | sed -n 2p | cut -c1-3`" = "gcc"; then
+      kind="gcc"
+    else
+      # Nope
+      kind="$host_os"
+    fi
+    ;;
+  *)
+    kind="$host_os"
+    ;;
+esac
+
+for arg in $@ ; do
+  if test "x$get_output_file" = "xyes"; then
+    link_args="$link_args $arg"
+    output_file="$arg"
+    get_output_file="no"
+    continue
+  fi
+
+  case "$arg" in
+    -c)
+      allargs="$allargs $arg"
+      compile_args="$compile_args $arg"
+
+      if test "x$do_link" = "xyes" -a -n "$output_file"; then
+        compile_args="$compile_args -o $output_file"
+      fi
+
+      do_link="no"
+      dash_c="yes"
+      ;;
+    -o)
+      allargs="$allargs $arg"
+      dash_o="yes"
+
+      if test "x$dash_c" = "xyes"; then
+        compile_args="$compile_args $arg"
+      else
+        link_args="$link_args $arg"
+        do_link="yes"
+        get_output_file="yes"
+      fi
+      ;;
+    -E|-M|-MT)
+      allargs="$allargs $arg"
+      compile_args="$compile_args $arg"
+      dash_c="yes"
+      do_link="no"
+      ;;
+    -l*)
+      libraries=" $libraries $arg "
+      allargs="$allargs $arg"
+      ;;
+    -prefix=*)
+      prefix="`expr "$arg" : '-prefix=\(.*\)'`"
+      ;;
+    -echo)
+      set -x
+      ;;
+    -show)
+      SHOW="echo"
+      ;;
+    -showconfig)
+      showconfigure
+      exit $status
+      ;;
+    -shlib)
+      USE_SHARED_LIB="yes"
+      ;;
+    -noshlib)
+      USE_SHARED_LIB="no"
+      ;;
+    -help)
+      usage
+      ;;
+    *\"*)
+      qarg="'"$arg"'"
+      allargs="$allargs $qarg"
+      ;;
+    *\'*)
+      qarg='\"'"$arg"'\"'
+      allargs="$allargs $qarg"
+      ;;
+    *)
+      allargs="$allargs $qarg"
+
+      if test -s "$arg"; then
+        ext=`expr "$arg" : '.*\(\..*\)'`
+
+        if test "x$ext" = "x.c"; then
+          do_compile="yes"
+          compile_args="$compile_args $arg"
+          fname=`basename $arg .c`
+          link_objs="$link_objs $fname.o"
+        elif test "x$ext" = "x.o"; then
+          if test "x$dash_c" = "xyes"; then
+            compile_args="$compile_args $arg"
+          else
+            do_link="yes"
+            link_objs="$link_objs $arg"
+          fi
+        elif test "x$ext" = "x.a"; then
+          # This is an archive that we're linking in
+          libraries=" $libraries $arg "
+        else
+          compile_args="$compile_args $arg"
+          link_args="$link_args $arg"
+        fi
+      else
+        compile_args="$compile_args $arg"
+        link_args="$link_args $arg"
+      fi
+      ;;
+  esac
+done
+
+if test "$dash_c" = "yes" -a "$do_compile" = no -a "$do_link" = no ; then
+    # -c was specified.  Force do_compile on.
+    do_compile=yes
+fi
+
+if test "x$do_compile" = "xyes"; then
+  if test "x$dash_c" != "xyes"; then
+    compile_args="-c $compile_args"
+  fi
+
+  $SHOW $CC -I$includedir $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $compile_args
+  status=$?
+
+  if test "$status" != "0"; then
+    exit $status
+  fi
+fi
+
+if test "x$do_link" = "xyes"; then
+  shared_link=""
+# conditionnaly link with the hl library  
+  if test "X$HL" = "Xhl"; then
+   libraries=" $libraries -lhdf5_hl -lhdf5 "
+  else
+   libraries=" $libraries  -lhdf5 "
+  fi
+  link_args="$link_args -L${libdir}"
+
+  case "$kind" in
+    gcc|linux*)
+      # MacOS X doesn't support the "-Wl,-rpath -Wl," style of linker flags.
+      # It appears to want none of them specified.
+      case "$host_os" in
+        darwin*)          flag="" ;;
+        *)                flag="-Wl,-rpath -Wl," ;;
+      esac
+      ;;
+    hpux*)                flag="-Wl,+b -Wl," ;;
+    freebsd*|solaris*)    flag="-R" ;;
+    rs6000*|aix*)         flag="-L" ;;
+    sgi)                  flag="-rpath " ;;
+    *)                    flag="" ;;
+  esac
+
+  if test -n "$flag"; then
+    shared_link="${flag}${libdir}"
+  fi
+
+  if test "x$USE_SHARED_LIB" != "xyes"; then
+    # The "-lhdf5" & "-lhdf5_hl" flags are in here already...This is a static
+    # compile though, so change it to the static version (.a) of the library.
+    new_libraries=""
+    for lib in $libraries; do
+      case "$lib" in
+        -lhdf5)
+          new_libraries="$new_libraries ${libdir}/libhdf5.a"
+          ;;
+        -lhdf5_hl)
+          new_libraries="$new_libraries ${libdir}/libhdf5_hl.a"
+          ;;
+        *)
+          new_libraries="$new_libraries $lib"
+          ;;
+      esac
+    done
+    libraries="$new_libraries"
+  fi
+
+  for lib in $libraries; do
+    if echo $link_args | grep " $lib " > /dev/null ||
+       echo $link_args | grep " $lib$" > /dev/null; then
+      :
+    else
+      link_args="$link_args $lib "
+    fi
+  done
+
+  # The LIBS are just a bunch of -l* libraries necessary for the HDF5
+  # module. It's okay if they're included twice in the compile line.
+  link_args="$link_args $H5BLD_LDFLAGS $H5BLD_LIBS"
+
+  # User's CPPFLAGS and CFLAGS come after their H5BLD counterparts.  User's 
+  # LDFLAGS come just before clibpath, user's LIBS come after $link_objs and 
+  # before the hdf5 libraries in $link_args, followed by any external library 
+  # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in 
+  # from the hdf5 build. The order of the flags is intended to give precedence
+  # to the user's flags.
+  $SHOW $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args $shared_link
+  status=$?
+fi
+
+exit $status
diff --git a/bin/h5redeploy.in b/bin/h5redeploy.in
new file mode 100644
index 0000000..242459a
--- /dev/null
+++ b/bin/h5redeploy.in
@@ -0,0 +1,216 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+
+## Update HDF5 compiler tools after the HDF5 software has been installed  ##
+## in a new location.							  ##
+## For help page, use "h5redeploy -help"				  ##
+##									  ##
+
+# Constants definitions
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+# Function definitions
+
+# show help page
+usage() {
+  # A wonderfully informative "usage" message.
+  echo "usage: $prog_name [OPTIONS]"
+  echo "  OPTIONS:"
+  echo "    -help|help        This help message"
+  echo "    -echo             Show all the shell commands executed"
+  echo "    -force            No prompt, just do it"
+  echo "    -prefix=DIR       New directory to find HDF5 lib/ and include/"
+  echo "                        subdirectories [default: current directory]"
+  echo "    -exec-prefix=DIR  New directory to find HDF5 lib/"
+  echo "                        subdirectory [default: <prefix>]"
+  echo "    -libdir=DIR       New directory for the HDF5 lib directory"
+  echo "                        [default: <exec-prefix>/lib]"
+  echo "    -includedir=DIR   New directory for the HDF5 header files"
+  echo "                        [default: <prefix>/include]"
+  echo "    -tool=TOOL        Tool to update. TOOL must be in the current"
+  echo "                        directory and writable. [default: $h5tools]"
+  echo "    -show             Show the commands without executing them"
+  echo " "
+  exit $EXIT_FAILURE
+}
+
+# display variable values
+dump_vars(){
+    echo "====Showing all variable values====="
+    echo prefix=$prefix
+    echo h5tools=$h5tools
+    echo "====End Showing====="
+}
+
+# show actions to be taken
+show_action()
+{
+    echo "Update the following tools because they are now installed at a new directory"
+    for t in $foundtools; do
+	echo "${t}:"
+	echo "   current setting=`sed -e '/^prefix=/s/prefix=//p' -e d $t`"
+	echo "   new     setting="\""$prefix"\"
+    done
+}
+
+
+# Report Error message
+ERROR()
+{
+    echo "***ERROR***"
+    echo "$1"
+}
+
+# Main
+#
+############################################################################
+## Installation directories:						  ##
+## prefix	architecture-independent files.				  ##
+## exec_prefix	architecture-dependent files, default is <prefix>.	  ##
+## libdir	libraries, default is <exec_prefix>/lib.		  ##
+## includedir	header files, default is <prefix/include>.		  ##
+## Not used here:							  ##
+## bindir	executables, <exec_prefix/bin>.				  ##
+############################################################################
+# Initialization
+h5tools="h5cc h5pcc h5fc h5pfc h5c++"	# possible hdf5 tools
+foundtools=		# tools found and will be modified
+fmode=			# force mode, default is off
+prefix=
+exec_prefix=
+libdir=
+includedir=
+
+# Parse options
+for arg in $@ ; do
+  case "$arg" in
+    -prefix=*)
+      prefix="`echo $arg | cut -f2 -d=`"
+      ;;
+    -exec-prefix=*)
+      exec_prefix="`echo $arg | cut -f2 -d=`"
+      ;;
+    -libdir=*)
+      libdir="`echo $arg | cut -f2 -d=`"
+      ;;
+    -includedir=*)
+      includedir="`echo $arg | cut -f2 -d=`"
+      ;;
+    -echo)
+      set -x
+      ;;
+    -show)
+      SHOW="echo"
+      ;;
+    -tool=*)
+      h5tools="`echo $arg | cut -f2 -d=`"
+      ;;
+    -help|help)
+      usage
+      ;;
+    -force)
+      fmode=yes
+      ;;
+    *)
+      ERROR "Unknown Option($arg)"
+      usage
+      exit $EXIT_FAILURE
+      ;;
+  esac
+done
+
+# Set to default value, one above where i am, if not given by user
+if [ -z "$prefix" ]; then
+    prefix=`(cd ..;pwd)`
+fi
+if [ -z "$exec_prefix" ]; then
+    exec_prefix='${prefix}'		# use single quotes to prevent expansion of $
+fi
+if [ -z "$libdir" ]; then
+    libdir='${exec_prefix}'/lib	# use single quotes to prevent expansion of $
+fi
+if [ -z "$includedir" ]; then
+    includedir='${prefix}'/include # use single quotes to prevent expansion of $
+fi
+
+for x in $h5tools; do
+    if [ -f $x ]; then
+	foundtools="$foundtools $x"
+	if [ ! -w $x ]; then
+	    ERROR "h5tool($x) is not writable"
+	    exit $EXIT_FAILURE
+	fi
+    fi
+done
+
+if [ -z "$foundtools" ]; then
+    ERROR "found no tools to modify"
+    exit $EXIT_FAILURE
+fi
+
+# Show actions to be taken and get consent
+show_action
+# Ask confirmation unless fmode is on
+if [ x-$fmode = x- ]; then
+    echo "Continue? (yes/no)"
+    read ansx
+    ans=`echo $ansx | tr "[A-Z]" "[a-z]"`
+    if [ x-$ans != x-yes ]; then
+	echo ABORT.  No tools changed.
+	exit $EXIT_FAILURE
+    fi
+fi
+
+
+# Create the update commands
+CMDFILE=/tmp/h5redeploy.$$
+touch $CMDFILE
+chmod 0600 $CMDFILE
+echo "/^prefix=/c"                    >> $CMDFILE
+echo prefix=\""$prefix"\"             >> $CMDFILE
+echo .                                >> $CMDFILE
+echo "/^exec_prefix=/c"               >> $CMDFILE
+echo exec_prefix=\""$exec_prefix"\"   >> $CMDFILE
+echo .                                >> $CMDFILE
+echo "/^libdir=/c"                    >> $CMDFILE
+echo libdir=\""$libdir"\"             >> $CMDFILE
+echo .                                >> $CMDFILE
+echo "/^includedir=/c"                >> $CMDFILE
+echo includedir=\""$includedir"\"     >> $CMDFILE
+echo .                                >> $CMDFILE
+(echo w; echo q)                      >> $CMDFILE
+
+
+# Update them
+if [ "$SHOW" = "echo" ]; then
+    echo "===Update commands are:===="
+    cat $CMDFILE
+    echo "===End Update commands====="
+fi
+
+for t in $foundtools; do
+    echo Update $t ...
+    COMMAND="ed - $t"
+    if [ "$SHOW" = "echo" ]; then
+	echo $COMMAND
+    else
+	$COMMAND < $CMDFILE
+    fi
+done
+
+
+# Cleanup
+rm -f $CMDFILE
+exit $EXIT_SUCCESS
diff --git a/bin/snapshot b/bin/snapshot
index 5900728..1218caa 100755
--- a/bin/snapshot
+++ b/bin/snapshot
@@ -130,10 +130,10 @@ DISPLAYUSAGE()
     set -
     cat <<EOF
 Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [help]
-	[clean] [distclean] [echo] [deploy <dir>] [deploydir <dir>]
-	[zlib <zlib_path>] [releasedir <dir>] [srcdirname <dir>] [check-vfd]
-        [check-vol]
-	[exec <command>] [module-load <module-list>] [op-configure <option>] 
+        [clean] [distclean] [echo] [deploy <dir>] [deploydir <dir>]
+        [zlib <zlib_path>] [releasedir <dir>] [srcdirname <dir>] [check-vfd]
+        [check-passthrough-vol]
+        [exec <command>] [module-load <module-list>] [op-configure <option>]
         [--<option>]
     all:      Run all commands (checkout, test & release)
               [Default is all]
@@ -150,8 +150,8 @@ Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [h
     setenv <name> <value>:
               Set environment variable <name> to <value>.
     setenvN <N> <name> <value> ...:
-	      Set environment variable with <N> values.
-	      E.g., setenvN 3 x a b c is same as setenv x="a b c".
+              Set environment variable with <N> values.
+              E.g., setenvN 3 x a b c is same as setenv x="a b c".
     srcdir:   Use srcdir option (does not imply other commands)
               "snapshot srcdir" is equivalent to "snapshot srcdir all"
               "snapshot srcdir checkout" is equivalent to "snapshot checkout"
@@ -169,9 +169,12 @@ Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [h
               Use <dir> as the release directory
               [Default is $ReleaseDir_default]
     check-vfd:
-	      Run make check-vfd instead of just make check.
-    check-vol:
-	      Run make check-vol instead of just make check.
+              Run make check-vfd instead of just make check.
+    check-passthrough-vol:
+              Run make check-passthrough-vol instead of just make check.
+              NOTE: Will only succeed with passthrough VOL connectors
+              that use the native VOL connector as the terminal
+              connector.
     exttest <testscript>;
               Run testscript;
     exec <command>:
@@ -425,8 +428,8 @@ while [ $# -gt 0 ] ; do
 	check-vfd)
 	    CHECKVAL=check-vfd
 	    ;;
-	check-vol)
-	    CHECKVAL=check-vol
+	check-passthrough-vol)
+	    CHECKVAL=check-passthrough-vol
 	    ;;
         module-load)
             shift
diff --git a/bin/warnhist b/bin/warnhist
new file mode 100755
index 0000000..5750c77
--- /dev/null
+++ b/bin/warnhist
@@ -0,0 +1,514 @@
+#!/usr/bin/perl -w
+require 5.003;
+
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+# Quincey Koziol, koziol@hdfgroup.org
+#  9 Aug 2013
+#
+# Purpose: Given an input file containing the output from a build of the
+#	   library, gather the file names and line numbers, alias
+#          identical types of warnings together into a single bin and
+#          report the number of warnings for each type of warning, each file
+#          and the total count of warnings
+
+# Perl modules/settings
+use strict;
+use Getopt::Std;
+
+# Global variables, for accumulating information
+my $totalcount = 0;
+my %warn_count = ();
+my $warncount;
+my %warn_file = ();
+my %warn_file_line = ();
+my %file_count = ();
+my $filecount;
+my $ignorecount = 0;
+my @ignorenames;
+my %ignored_files = ();
+my %warn_file_indices = ();
+my %file_warn_indices = ();
+my %file_warn = ();
+my %file_warn_line = ();
+my $current_warning = 0;
+my $current_file = 0;
+my $warn_index;
+my $last_c_name;
+my $last_fort_name;
+my $last_fort_line;
+
+# declare the Perl command line flags/options we want to allow
+my %options=();
+getopts("FWht:w:f:i:l", \%options);
+
+# Display usage, if requested
+if($options{h}) {
+    print "Usage: 'warnhist [-h] [-t <prefix>] [-w <n>] [-W] [-f <n>] [-F] [-l] [-i <name list> [file]'\n";
+    print "\t-h\tDisplay this usage\n";
+    print "\t-t <prefix>\tTrim pathname prefix from filenames, <prefix>\n";
+    print "\t-w <n>\tDisplay files for a given warning index list, <n>\n";
+    print "\t\t<n> can be a single value, a range, or a comma separated list\n";
+    print "\t\tFor example: '0' or '0,4' or '8-10' or '0,2-4,8-10,13'\n";
+    print "\t-W\tDisplay files for all warnings\n";
+    print "\t-f <n>\tDisplay warnings for a given file index list, <n>\n";
+    print "\t\t<n> can be a single value, a range, or a comma separated list\n";
+    print "\t\tFor example: '0' or '0,4' or '8-10' or '0,2-4,8-10,13'\n";
+    print "\t-F\tDisplay warnings for all files\n";
+    print "\t-l\tDisplay line nunbers for file/warning\n";
+    print "\t-i <name list>\tIgnore named files, <name list>\n";
+    print "\t\t<name list> is a comma separated list, with no spaces\n";
+    print "\t\tFor example: 'H5LTparse' or 'H5LTparse,H5LTanalyze'\n";
+    print "\tfile\tFilename containing build output\n";
+    print "\t\tIf no file is given, standard input is used.\n";
+    exit;
+}
+
+# Parse list of file names to ignore
+if(exists $options{i}) {
+    @ignorenames = split /,/, $options{i};
+#print @ignorenames;
+}
+
+# Parse list of warning indices to expand file names
+if(exists $options{w}) {
+    my @tmp_indices;
+
+    @tmp_indices = split /,/, $options{w};
+#print @tmp_indices;
+    for my $x (@tmp_indices) {
+#print "x = '$x'\n";
+        if($x =~ /\-/) {
+            my $start_index;
+            my $end_index;
+
+#print "matched = '$x'\n";
+            ($start_index, $end_index) = split /\-/, $x;
+#print "start_index = '$start_index', end_index = '$end_index'\n";
+            for my $y ($start_index..$end_index) {
+#print "y = '$y'\n";
+                if(!(exists $warn_file_indices{$y})) {
+                    $warn_file_indices{$y} = $y;
+                }
+            }
+        }
+        else {
+            if(!(exists $warn_file_indices{$x})) {
+                $warn_file_indices{$x} = $x;
+            }
+        }
+    }
+#foreach (sort keys %warn_file_indices) {
+#    print "$_ : $warn_file_indices{$_}\n";
+#}
+}
+
+# Parse list of file indices to expand warnings
+if(exists $options{f}) {
+    my @tmp_indices;
+
+    @tmp_indices = split /,/, $options{f};
+#print @tmp_indices;
+    for my $x (@tmp_indices) {
+#print "x = '$x'\n";
+        if($x =~ /\-/) {
+            my $start_index;
+            my $end_index;
+
+#print "matched = '$x'\n";
+            ($start_index, $end_index) = split /\-/, $x;
+#print "start_index = '$start_index', end_index = '$end_index'\n";
+            for my $y ($start_index..$end_index) {
+#print "y = '$y'\n";
+                if(!(exists $file_warn_indices{$y})) {
+                    $file_warn_indices{$y} = $y;
+                }
+            }
+        }
+        else {
+            if(!(exists $file_warn_indices{$x})) {
+                $file_warn_indices{$x} = $x;
+            }
+        }
+    }
+#foreach (sort keys %warn_file_indices) {
+#    print "$_ : $warn_file_indices{$_}\n";
+#}
+}
+
+PARSE_LINES:
+while (<>) {
+    my $name;
+    my $line;
+    my $prev_line;
+    my $toss;
+    my $offset;
+    my $warning;
+    my $extra;
+
+    # Retain last FORTRAN compile line, which comes a few lines before warning
+    if($_ =~ /.*\.[fF]90:.*/) {
+        ($last_fort_name, $last_fort_line, $toss) = split /\:/, $_;
+        ($last_fort_line, $toss) = split /\./, $last_fort_line;
+    }
+
+    # Retain last C compile line, which possibly comes a few lines before warning
+    if($_ =~ /.*[A-Za-z0-9_]\.c:.*/) {
+        ($last_c_name, $toss) = split /\:/, $_;
+    }
+
+    next if $_ !~ /[Ww]arning:/;
+
+    # Skip warnings from linker
+    next if $_ =~ /ld: warning:/;
+
+    # Check for weird formatting of warning message
+    if($_ =~ /^cc1: warning:.*/) {
+        $name = $last_c_name;
+        $line = "??";
+        ($toss, $toss, $warning, $extra) = split /\:/, $_;
+    # Check for FORTRAN warning output
+    } elsif($_ =~ /^Warning:.*/) {
+        $name = $last_fort_name;
+        $line = $last_fort_line;
+        ($toss, $warning, $extra) = split /\:/, $_;
+#print "1:",$.,":",$_;
+#        $_ = <>;
+#print "2:",$.,":",$_;
+#        if($_ =~ /^\sFC.*/) {
+#            $_ = <>;
+#print "3:",$.,":",$_;
+#        }
+#        ($name, $line, $toss) = split /\:/, $_;
+#print "4:","'",$name,"'","-","'",$line,"'","\n";
+        # Check for improperly parsed filename or line
+        if($name =~ /^$/) {
+            print "Filename is a null string! Input line #$. is: '$_'";
+            next
+        }
+        if($line =~ /^$/) {
+            print "Line is a null string! Input line #$. is: '$_'";
+            next
+        }
+    } else {
+        # Check for 'character offset' field
+        if($_ =~ /^.*[0-9]+\:[0-9]+\:/) {
+            ($name, $line, $offset, $toss, $warning, $extra) = split /\:/, $_;
+        } else {
+            ($name, $line, $toss, $warning, $extra) = split /\:/, $_;
+        }
+    }
+
+    # Check for extra ':' followed by more text in original warning string,
+    #  and append the ':' and text back onto the parsed warning
+    #  (Use 'length $extra' idiom to avoid warning when $extra is undefined)
+    if(length $extra ) {
+        $warning = join ':', $warning, $extra;
+    }
+
+    # Trim leading '..' paths from filename
+    while($name =~ /^\.\.\//) {
+        $name =~ s/^\.\.\///g;
+    }
+
+    # Check for trimming prefix
+    if((exists $options{t}) && ($name =~ /$options{t}/)) {
+        $name =~ s/^$options{t}\///g;
+    }
+
+    # Check for ignored file
+    if(exists $options{i}) {
+        for my $x (@ignorenames) {
+#print "x = '$x'\n";
+            if($name =~ /$x/) {
+# print "matched name = '$name'\n";
+                $ignorecount++;
+                if(!(exists $ignored_files{$name})) {
+                    $ignored_files{$name} = $name;
+                }
+                next PARSE_LINES;
+            }
+        }
+    }
+
+    # Check for improperly parsed warning (usually an undefined warning string)
+    if(!defined $warning) {
+        print "Warning Undefined! Input line is: '$_'";
+        next
+    }
+
+    # Get rid of leading & trailing whitespace
+    $warning =~ s/^\s//g;
+    $warning =~ s/\s$//g;
+
+    # Check for improperly parsed warning
+    if($warning =~ /^$/) {
+        print "Warning is a null string! Input line is: '$_'";
+        next
+    }
+
+    # Convert all quotes to '
+    $warning =~ s/‘/'/g;
+    $warning =~ s/’/'/g;
+
+    # Skip supplemental warning message
+    next if $warning =~ /near initialization for/;
+
+    # Skip GCC warning that should be a note
+    next if $_ =~ /\(this will be reported only once per input file\)/;
+
+    # Eliminate "{aka <some type>}" info
+    if($warning =~ /\s\{aka [A-Za-z_0-9\s\*]*\}'/) {
+        $warning =~ s/\s\{aka [A-Za-z_0-9\s\*]*\}//g;
+    }
+
+    # Genericize warnings
+    if($warning =~ /variable '[A-Za-z_0-9]*' set but not used.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /unused variable '[A-Za-z_0-9]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /implicit conversion from '[A-Za-z_0-9]*' to '[A-Za-z_0-9]*' when passing argument to function.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /implicit conversion from '[A-Za-z_0-9]*' to '[A-Za-z_0-9]*' to match other operand of binary expression.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /conversion to '[A-Za-z_0-9\s]*' from '[A-Za-z_0-9\s]*' may alter its value.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /conversion to '[A-Za-z_0-9\s]*' from '[A-Za-z_0-9\s]*' may change the sign of the result.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9\s]*' discards '[A-Za-z_0-9\s]*'.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /'[A-Za-z_0-9\s]*' defined but not used.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /cast discards '[A-Za-z_0-9\(\)\s]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9\(\)\s]*'/'-'/g;
+    } elsif($warning =~ /size of '[A-Za-z_0-9\(\)\s\*]*' is [0-9]* bytes.*/) {
+        $warning =~ s/is [0-9]* bytes/is - bytes/g;
+        $warning =~ s/'[A-Za-z_0-9\(\)\s\*]*'/'-'/g;
+    } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9\(\)\s]*' from incompatible.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9\(\)\s]*'/'-'/g;
+    } elsif($warning =~ /stack usage is [0-9]* bytes.*/) {
+        $warning =~ s/stack usage is [0-9]*/stack usage is -/g;
+    } elsif($warning =~ /stack usage might be [0-9]* bytes.*/) {
+        $warning =~ s/stack usage might be [0-9]*/stack usage might be -/g;
+    } elsif($warning =~ /the frame size of [0-9]* bytes is larger than [0-9]* bytes.*/) {
+        $warning =~ s/the frame size of [0-9]* bytes is larger than [0-9]*/the frame size of - bytes is larger than -/g;
+    } elsif($warning =~ /enumeration value '[A-Za-z_0-9\s]*' not handled in switch.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /"[A-Za-z_0-9\s]*" is not defined.*/) {
+        $warning =~ s/"[A-Za-z_0-9\s]*"/"-"/g;
+    } elsif($warning =~ /macro "[A-Za-z_0-9\s]*" is not used.*/) {
+        $warning =~ s/"[A-Za-z_0-9\s]*"/"-"/g;
+    } elsif($warning =~ /unused parameter '[A-Za-z_0-9\s]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /request for implicit conversion from '[A-Za-z_0-9\s\*]*' to '[A-Za-z_0-9\s\<\>\[\]\(\)\*]*' not permitted in C\+\+.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s\*\<\>\[\]\(\)]*'/'-'/g;
+    } elsif($warning =~ /no previous prototype for '[A-Za-z_0-9\s]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /declaration of '[A-Za-z_0-9\s]*' shadows a previous local.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /cast from function call of type '[A-Za-z_0-9\s\*]*' to non-matching type '[A-Za-z_0-9\s\*]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s\*]*'/'-'/g;
+    } elsif($warning =~ /'[A-Za-z_0-9\s]*' declared '[A-Za-z_0-9\s]*' but never defined.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /declaration of '[A-Za-z_0-9\s]*' shadows a global declaration.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /typedef '[A-Za-z_0-9\s]*' locally defined but not used.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /format '%[a-z]*' expects argument of type '[A-Za-z_0-9\s\*]*', but argument [0-9]* has type '[A-Za-z_0-9\s\*\(\),]*'.*/) {
+        $warning =~ s/but argument [0-9]*/but argument -/g;
+        $warning =~ s/'[%A-Za-z_0-9\s\*\(\),]*'/'-'/g;
+    } elsif($warning =~ /conversion to '[A-Za-z_0-9\s]*' alters '[A-Za-z_0-9\s]*' constant value.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s]*'/'-'/g;
+    } elsif($warning =~ /to be safe all intermediate pointers in cast from '[A-Za-z_0-9\s\*]*' to '[A-Za-z_0-9\s\*]*' must be 'const' qualified.*/) {
+        $warning =~ s/'[A-Za-z_0-9\s\*]*'/'-'/g;
+    } elsif($warning =~ /identifier '[A-Za-z_0-9]*' conflicts with C\+\+ keyword.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /nested extern declaration of '[A-Za-z_0-9]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /Procedure '[A-Za-z_0-9]*' called with an implicit interface.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /Unused dummy argument '[A-Za-z_0-9]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /Unused parameter '[A-Za-z_0-9]*' declared at.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /Unused variable '[A-Za-z_0-9]*' declared at.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /Inequality comparison for REAL\([0-9]*\) at.*/) {
+        $warning =~ s/REAL\([0-9]*\)/REAL\(-\)/g;
+    } elsif($warning =~ /Possible change of value in conversion from INTEGER\([0-9]*\) to (INTEGER|REAL)\([0-9]*\) at.*/) {
+        $warning =~ s/INTEGER\([0-9]*\)/INTEGER\(-\)/g;
+        $warning =~ s/REAL\([0-9]*\)/REAL\(-\)/g;
+    } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' with different width due to prototype.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' as unsigned due to prototype.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' discards qualifiers from pointer target type.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' as floating rather than integer due to prototype.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' as 'float' rather than 'double' due to prototype.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/;
+    } elsif($warning =~ /passing argument [0-9]* of '[A-Za-z_0-9]*' as signed due to prototype.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /format '\%[A-Za-z0-9]*' expects type '[a-z][a-z\s\*]*', but argument [0-9]* has type '[a-z][a-z\(\)_,\s\*]*'.*/) {
+        $warning =~ s/but argument [0-9]*/but argument -/g;
+        $warning =~ s/'\%[A-Za-z0-9]*'/'\%-'/g;
+        $warning =~ s/'[a-z][a-z_,\s\*\(\)]*'/'-'/g;
+    } elsif($warning =~ /implicit declaration of function '[A-Za-z_0-9]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /'[A-Za-z_\.\[\]0-9]*' may be used uninitialized in this function.*/) {
+        $warning =~ s/'[A-Za-z_\.\[\]0-9]*'/'-'/g;
+    } elsif($warning =~ /redundant redeclaration of '[A-Za-z_0-9]*'.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /declaration of '[A-Za-z_0-9]*' shadows a parameter.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /ISO C90 does not support the '[a-z]*' gnu_scanf length modifier.*/) {
+        $warning =~ s/'[a-z]*'/'-'/g;
+    } elsif($warning =~ /ISO C90 does not support the '[a-z]*' gnu_printf length modifier.*/) {
+        $warning =~ s/'[a-z]*'/'-'/g;
+    } elsif($warning =~ /ISO C90 does not support the '%[a-z]*' gnu_printf format.*/) {
+        $warning =~ s/'%[a-z]*'/'%-'/g;
+    } elsif($warning =~ /string length '[0-9]*' is greater than the length.*/) {
+        $warning =~ s/string length '[0-9]*' is/string length '-' is/g;
+    } elsif($warning =~ /enum conversion when passing argument [0-9]* of '[A-Za-z_0-9]*' is invalid.*/) {
+        $warning =~ s/passing argument [0-9]*/passing argument -/g;
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /duplicate declaration of '[A-Za-z_0-9]*' is invalid in.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /Variable '[A-Za-z_0-9]*' at \([0-9]*\) is a dummy argument of the BIND\(C\) procedure '[A-Za-z_0-9]*' but may not be C interoperable.*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+        $warning =~ s/at \([0-9]*\)/at \(-\)/g;
+    } elsif($warning =~ /Variable '[A-Za-z_0-9]*' at \([0-9]*\) may not be a C interoperable kind but it is BIND\(C\).*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+        $warning =~ s/at \([0-9]*\)/at \(-\)/g;
+    } elsif($warning =~ /Component '[A-Za-z_0-9]*' in derived type '[A-Za-z_0-9]*' at \([0-9]*\) may not be C interoperable, even though derived type '[A-Za-z_0-9]*' is BIND\(C\).*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+        $warning =~ s/at \([0-9]*\)/at \(-\)/g;
+    } elsif($warning =~ /function might be candidate for attribute '[A-Za-z_0-9]*' if it is known to return normally \[-Wsuggest-attribute=[A-Za-z_0-9]*\].*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+        $warning =~ s/=[A-Za-z_0-9]*\]/=-\]/g;
+    } elsif($warning =~ /function might be candidate for attribute '[A-Za-z_0-9]*' \[-Wsuggest-attribute=[A-Za-z_0-9]*\].*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+        $warning =~ s/=[A-Za-z_0-9]*\]/=-\]/g;
+    } elsif($warning =~ /passing argument [0-9]+ of '[A-Za-z_0-9]*' makes integer from pointer without a cast \[-Wint-conversion\].*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+        $warning =~ s/[0-9]+/-/g;
+    } elsif($warning =~ /function '[A-Za-z_0-9]*' might be a candidate for '[A-Za-z_0-9]*' format attribute \[-Wsuggest-attribute=format\].*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /inlining failed in call to '[A-Za-z_0-9]*': call is unlikely and code size would grow \[-Winline\].*/) {
+        $warning =~ s/'[A-Za-z_0-9]*'/'-'/g;
+    } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive writing between [0-9]+ and [0-9]+ bytes into a region of size [0-9]+ \[-Wformat-overflow=\].*/) {
+        $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+        $warning =~ s/[0-9]+/-/g;
+    } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive writing between [0-9]+ and [0-9]+ bytes into a region of size between [0-9]+ and [0-9]+ \[-Wformat-overflow=\].*/) {
+        $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+        $warning =~ s/[0-9]+/-/g;
+    } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive output may be truncated writing between [0-9]+ and [0-9]+ bytes into a region of size [0-9]+ \[-Wformat-truncation=\].*/) {
+        $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+        $warning =~ s/[0-9]+/-/g;
+    } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive output may be truncated writing up to [0-9]+ bytes into a region of size [0-9]+ \[-Wformat-truncation=\].*/) {
+        $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+        $warning =~ s/[0-9]+/-/g;
+    } elsif($warning =~ /'%[0-9]*[\.\*]*[0-9]*[dfsu]' directive output may be truncated writing between [0-9]+ and [0-9]+ bytes into a region of size between [0-9]+ and [0-9]+ \[-Wformat-truncation=\].*/) {
+        $warning =~ s/'%[0-9]*[\.\*]*[0-9]*[dfsu]'/'-'/g;
+        $warning =~ s/[0-9]+/-/g;
+    }
+
+    # Increment count for [generic] warning
+    $warn_count{$warning}++;
+    $warn_file{$warning}{$name}++;
+    push(@{ $warn_file_line{$warning}{$name} }, $line);
+
+    # Increment count for filename
+    $file_count{$name}++;
+    $file_warn{$name}{$warning}++;
+    push(@{ $file_warn_line{$name}{$warning} }, $line);
+
+    # Increment total count of warnings
+    $totalcount++;
+
+#    print "name = $name\n";
+#    print "line = $line\n";
+#    print "offset = $offset\n";
+#    print "warning = \"$warning\"\n";
+}
+
+print "Total [non-ignored] warnings: $totalcount\n";
+print "Total ignored warnings: $ignorecount\n";
+$warncount = keys %warn_count;
+print "Total unique kinds of warnings: $warncount\n";
+$filecount = keys %file_count;
+print "Total files with warnings: $filecount\n\n";
+
+# Print warnings in decreasing frequency
+print "# of Warnings by frequency (file count)\n";
+print "=======================================\n";
+for my $x (sort {$warn_count{$b} <=> $warn_count{$a}} keys(%warn_count)) {
+    printf ("[%2d] %4d (%2d) - %s\n", $current_warning++, $warn_count{$x}, scalar(keys %{$warn_file_line{$x}}), $x);
+    if((exists $options{W}) || (exists $options{w})) {
+        my $curr_index = $current_warning - 1;
+
+        if((exists $warn_file_indices{$curr_index}) && $curr_index == $warn_file_indices{$curr_index}) {
+            for my $y (sort {$warn_file{$x}{$b} <=> $warn_file{$x}{$a}} keys(%{$warn_file{$x}})) {
+                printf ("\t%4d - %s\n", $warn_file{$x}{$y}, $y);
+                if(exists $options{l}) {
+                    printf ("\t\tLines: ");
+                    for my $z ( @{ $warn_file_line{$x}{$y} } ) {
+                        printf ("%s, ", $z);
+                    }
+                    printf("\n");
+                }
+            }
+        }
+    }
+}
+
+# Print warnings in decreasing frequency, by filename
+print "\n# of Warnings by filename (warning type)\n";
+print   "========================================\n";
+for my $x (sort {$file_count{$b} <=> $file_count{$a}} keys(%file_count)) {
+    printf ("[%3d] %4d (%2d) - %s\n", $current_file++, $file_count{$x}, scalar(keys %{$file_warn_line{$x}}), $x);
+    if((exists $options{F}) || (exists $options{f})) {
+        my $curr_index = $current_file - 1;
+
+        if((exists $file_warn_indices{$curr_index}) && $curr_index == $file_warn_indices{$curr_index}) {
+            for my $y (sort {$file_warn{$x}{$b} <=> $file_warn{$x}{$a}} keys(%{$file_warn{$x}})) {
+                printf ("\t%4d - %s\n", $file_warn{$x}{$y}, $y);
+                if(exists $options{l}) {
+                    printf ("\t\tLines: ");
+                    for my $z ( @{ $file_warn_line{$x}{$y} } ) {
+                        printf ("%s, ", $z);
+                    }
+                    printf("\n");
+                }
+            }
+        }
+    }
+}
+
+# Print names of files that were ignored
+print "\nIgnored filenames\n";
+print   "=================\n";
+for my $x (sort keys(%ignored_files)) {
+    print "$x\n";
+}
+