Merge pull request #593 in HDFFV/hdf5 from hdf5_1_8_19 to 1.8/masterhdf5-1_8_19

* commit 'c15238a38fdb3692466bc1218de4c5aeb420fdcc': (153 commits)
  Commit changes to release version strings in README.txt and RELEASE.txt from release.
  Put back link targets for dynamically loaded libraries in Makefile.ams that avoid linking with libhdf5 dependencies.  Some configurations failed unnecessarily to find and link with lz and lsz when these targets were removed.
  Update URL for obtaining source inINSTALL file.
  Disable building of libdynlib* dynamically loaded plugin test libraries on CYGWIN. Added known problem entry to RELEASE.txt. Set version for 1.8.19 release. Barbara updated contents of README.txt file.
  Moved libdynlib* plugin test libraries to noist_LT_LIBRARIES with added flag '-rpath /nowhere' to stop them being installed while keeping them from linking with libhdf5, etc. Incremented version to 1.8.19-pre1 and ran bin/release to create tar and zip files for testing.
  HDF5 1.8.19-pre1 released.
  Add RELEASE.txt entry for H5Dget_chunk_size.
  Remove test entries
  Ran bin/reconfigure after so number change.
  Update hl lib .so numbers:  new function was added. Update RELEASE.txt:  move H5DOread_chunks entry to new features, clarify entry for HDFFV-10051.
  Updated notes for test fixes and added bug fix for h5diff help text.
  Update h5vers and release scripts for 1.8.19 branch, set version to 1.8.19-pre1.
  Make script name consistent across product versions
  Update version to 1.8.19-pre1.
  Propagate .so number changes to Makefile.ins with bin/reconfigure.
  Add toolset option
  Update so version numbers according to the interface compatibility report.
  Update supported Platforms section. Remove empty sub-sections of New Features and Bugs Fixed sections.
  Add entries for HDFFV-10051 and HDFFV-9934 to RELEASE.txt.
  Correct spelling
  ...

1 files changed, 263 insertions, 265 deletions

diff --git a/c++/examples/writedata.cpp b/c++/examples/writedata.cpp
index 496c5d1..f8a1cea 100644
--- a/c++/examples/writedata.cpp
+++ b/c++/examples/writedata.cpp
@@ -5,12 +5,10 @@
  *                                                                           *
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
- * the files COPYING and Copyright.html.  COPYING can be found at the root   *
- * of the source code distribution tree; Copyright.html can be found at the  *
- * root level of an installed copy of the electronic HDF5 document set and   *
- * is linked from the top-level documents page.  It can also be found at     *
- * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
- * access to either file, you may request a copy from help@hdfgroup.org.     *
+ * the COPYING file, which can be found at the root of the source code       *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * If you do not have access to either file, you may request a copy from     *
+ * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
@@ -44,19 +42,19 @@
 
 const H5std_string FILE_NAME( "Select.h5" );
 const H5std_string DATASET_NAME( "Matrix in file" );
-const int   MSPACE1_RANK = 1;	// Rank of the first dataset in memory
+const int   MSPACE1_RANK = 1;   // Rank of the first dataset in memory
 const int   MSPACE1_DIM = 50;   // Dataset size in memory
-const int   MSPACE2_RANK = 1;	// Rank of the second dataset in memory
-const int   MSPACE2_DIM = 4;	// Dataset size in memory
-const int   FSPACE_RANK = 2;	// Dataset rank as it is stored in the file
-const int   FSPACE_DIM1 = 8;	// Dimension sizes of the dataset as it is
-const int   FSPACE_DIM2 = 12;	// 	stored in the file
-const int   MSPACE_RANK = 2;	// Rank of the first dataset in memory
-const int   MSPACE_DIM1 = 8;	// We will read dataset back from the file
-const int   MSPACE_DIM2 = 9;	// 	to the dataset in memory with these
-				// 	dataspace parameters
-const int   NPOINTS = 4;	// Number of points that will be selected
-				//	and overwritten
+const int   MSPACE2_RANK = 1;   // Rank of the second dataset in memory
+const int   MSPACE2_DIM = 4;    // Dataset size in memory
+const int   FSPACE_RANK = 2;    // Dataset rank as it is stored in the file
+const int   FSPACE_DIM1 = 8;    // Dimension sizes of the dataset as it is
+const int   FSPACE_DIM2 = 12;   //      stored in the file
+const int   MSPACE_RANK = 2;    // Rank of the first dataset in memory
+const int   MSPACE_DIM1 = 8;    // We will read dataset back from the file
+const int   MSPACE_DIM2 = 9;    //      to the dataset in memory with these
+                                //      dataspace parameters
+const int   NPOINTS = 4;        // Number of points that will be selected
+                                //      and overwritten
 
 int main (void)
 {
@@ -67,271 +65,271 @@ int main (void)
      */
     try
     {
-	/*
-	 * Turn off the auto-printing when failure occurs so that we can
-	 * handle the errors appropriately
-	 */
-	Exception::dontPrint();
-
-	/*
-	 * Create a file.
-	 */
-	H5File* file = new H5File( FILE_NAME, H5F_ACC_TRUNC );
-
-	/*
-	* Create property list for a dataset and set up fill values.
-	*/
-	int fillvalue = 0;   /* Fill value for the dataset */
-	DSetCreatPropList plist;
-	plist.setFillValue(PredType::NATIVE_INT, &fillvalue);
-
-	/*
-	 * Create dataspace for the dataset in the file.
-	 */
-	hsize_t fdim[] = {FSPACE_DIM1, FSPACE_DIM2}; // dim sizes of ds (on disk)
-	DataSpace fspace( FSPACE_RANK, fdim );
-
-	/*
-	 * Create dataset and write it into the file.
-	 */
-	DataSet* dataset = new DataSet(file->createDataSet(
-		DATASET_NAME, PredType::NATIVE_INT, fspace, plist));
-
-	/*
-	 * Select hyperslab for the dataset in the file, using 3x2 blocks,
-	 * (4,3) stride and (2,4) count starting at the position (0,1).
-	 */
-	hsize_t start[2]; // Start of hyperslab
-	hsize_t stride[2]; // Stride of hyperslab
-	hsize_t count[2];  // Block count
-	hsize_t block[2];  // Block sizes
-	start[0]  = 0; start[1]  = 1;
-	stride[0] = 4; stride[1] = 3;
-	count[0]  = 2; count[1]  = 4;
-	block[0]  = 3; block[1]  = 2;
-	fspace.selectHyperslab( H5S_SELECT_SET, count, start, stride, block);
-
-	/*
-	 * Create dataspace for the first dataset.
-	 */
-	hsize_t dim1[] = {MSPACE1_DIM};  /* Dimension size of the first dataset
-	                                   (in memory) */
-	DataSpace mspace1( MSPACE1_RANK, dim1 );
-
-	/*
-	 * Select hyperslab.
-	 * We will use 48 elements of the vector buffer starting at the
-	 * second element.  Selected elements are 1 2 3 . . . 48
-	 */
-	start[0]  = 1;
-	stride[0] = 1;
-	count[0]  = 48;
-	block[0]  = 1;
-	mspace1.selectHyperslab( H5S_SELECT_SET, count, start, stride, block);
-
-	/*
-	 * Write selection from the vector buffer to the dataset in the file.
-	 *
-	 * File dataset should look like this:
-	 *                    0  1  2  0  3  4  0  5  6  0  7  8
-	 *                    0  9 10  0 11 12  0 13 14  0 15 16
-	 *                    0 17 18  0 19 20  0 21 22  0 23 24
-	 *                    0  0  0  0  0  0  0  0  0  0  0  0
-	 *                    0 25 26  0 27 28  0 29 30  0 31 32
-	 *                    0 33 34  0 35 36  0 37 38  0 39 40
-	 *                    0 41 42  0 43 44  0 45 46  0 47 48
-	 *                    0  0  0  0  0  0  0  0  0  0  0  0
-	 */
-	int    vector[MSPACE1_DIM];	// vector buffer for dset
-
-	/*
-	 * Buffer initialization.
-	 */
-	vector[0] = vector[MSPACE1_DIM - 1] = -1;
-	for (i = 1; i < MSPACE1_DIM - 1; i++)
-	    vector[i] = i;
-
-	dataset->write( vector, PredType::NATIVE_INT, mspace1, fspace );
-
-	/*
-	 * Reset the selection for the file dataspace fid.
-	 */
-	fspace.selectNone();
-
-	/*
-	 * Create dataspace for the second dataset.
-	 */
-	hsize_t dim2[] = {MSPACE2_DIM};  /* Dimension size of the second dataset
-	                                   (in memory */
-	DataSpace mspace2( MSPACE2_RANK, dim2 );
-
-	/*
-	 * Select sequence of NPOINTS points in the file dataspace.
-	 */
-	hsize_t coord[NPOINTS][FSPACE_RANK]; /* Array to store selected points
-	                                        from the file dataspace */
-	coord[0][0] = 0; coord[0][1] = 0;
-	coord[1][0] = 3; coord[1][1] = 3;
-	coord[2][0] = 3; coord[2][1] = 5;
-	coord[3][0] = 5; coord[3][1] = 6;
-
-	fspace.selectElements( H5S_SELECT_SET, NPOINTS, (const hsize_t *)coord);
-
-	/*
-	 * Write new selection of points to the dataset.
-	 */
-	int    values[] = {53, 59, 61, 67};  /* New values to be written */
-	dataset->write( values, PredType::NATIVE_INT, mspace2, fspace );
-
-	/*
-	 * File dataset should look like this:
-	 *                   53  1  2  0  3  4  0  5  6  0  7  8
-	 *                    0  9 10  0 11 12  0 13 14  0 15 16
-	 *                    0 17 18  0 19 20  0 21 22  0 23 24
-	 *                    0  0  0 59  0 61  0  0  0  0  0  0
-	 *                    0 25 26  0 27 28  0 29 30  0 31 32
-	 *                    0 33 34  0 35 36 67 37 38  0 39 40
-	 *                    0 41 42  0 43 44  0 45 46  0 47 48
-	 *                    0  0  0  0  0  0  0  0  0  0  0  0
-	 *
-	 */
-
-	/*
-	 * Close the dataset and the file.
-	 */
-	delete dataset;
-	delete file;
-
-	/*
-	 * Open the file.
-	 */
-	file = new H5File( FILE_NAME, H5F_ACC_RDONLY );
-
-	/*
-	 * Open the dataset.
-	 */
-	dataset = new DataSet( file->openDataSet( DATASET_NAME ));
-
-	/*
-	 * Get dataspace of the dataset.
-	 */
-	fspace = dataset->getSpace();
-
-	/*
-	 * Select first hyperslab for the dataset in the file. The following
-	 * elements are selected:
-	 *                     10  0 11 12
-	 *                     18  0 19 20
-	 *                      0 59  0 61
-	 *
-	 */
-	start[0] = 1; start[1] = 2;
-	block[0] = 1; block[1] = 1;
-	stride[0] = 1; stride[1] = 1;
-	count[0]  = 3; count[1]  = 4;
-	fspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
-
-	/*
-	 * Add second selected hyperslab to the selection.
-	 * The following elements are selected:
-	 *                    19 20  0 21 22
-	 *                     0 61  0  0  0
-	 *                    27 28  0 29 30
-	 *                    35 36 67 37 38
-	 *                    43 44  0 45 46
-	 *                     0  0  0  0  0
-	 * Note that two hyperslabs overlap. Common elements are:
-	 *                                              19 20
-	 *                                               0 61
-	 */
-	start[0] = 2; start[1] = 4;
-	block[0] = 1; block[1] = 1;
-	stride[0] = 1; stride[1] = 1;
-	count[0]  = 6; count[1]  = 5;
-	fspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block);
-
-	/*
-	 * Create memory dataspace.
-	 */
-	hsize_t mdim[] = {MSPACE_DIM1, MSPACE_DIM2}; /* Dimension sizes of the
+        /*
+         * Turn off the auto-printing when failure occurs so that we can
+         * handle the errors appropriately
+         */
+        Exception::dontPrint();
+
+        /*
+         * Create a file.
+         */
+        H5File* file = new H5File( FILE_NAME, H5F_ACC_TRUNC );
+
+        /*
+        * Create property list for a dataset and set up fill values.
+        */
+        int fillvalue = 0;   /* Fill value for the dataset */
+        DSetCreatPropList plist;
+        plist.setFillValue(PredType::NATIVE_INT, &fillvalue);
+
+        /*
+         * Create dataspace for the dataset in the file.
+         */
+        hsize_t fdim[] = {FSPACE_DIM1, FSPACE_DIM2}; // dim sizes of ds (on disk)
+        DataSpace fspace( FSPACE_RANK, fdim );
+
+        /*
+         * Create dataset and write it into the file.
+         */
+        DataSet* dataset = new DataSet(file->createDataSet(
+                DATASET_NAME, PredType::NATIVE_INT, fspace, plist));
+
+        /*
+         * Select hyperslab for the dataset in the file, using 3x2 blocks,
+         * (4,3) stride and (2,4) count starting at the position (0,1).
+         */
+        hsize_t start[2]; // Start of hyperslab
+        hsize_t stride[2]; // Stride of hyperslab
+        hsize_t count[2];  // Block count
+        hsize_t block[2];  // Block sizes
+        start[0]  = 0; start[1]  = 1;
+        stride[0] = 4; stride[1] = 3;
+        count[0]  = 2; count[1]  = 4;
+        block[0]  = 3; block[1]  = 2;
+        fspace.selectHyperslab( H5S_SELECT_SET, count, start, stride, block);
+
+        /*
+         * Create dataspace for the first dataset.
+         */
+        hsize_t dim1[] = {MSPACE1_DIM};  /* Dimension size of the first dataset
+                                           (in memory) */
+        DataSpace mspace1( MSPACE1_RANK, dim1 );
+
+        /*
+         * Select hyperslab.
+         * We will use 48 elements of the vector buffer starting at the
+         * second element.  Selected elements are 1 2 3 . . . 48
+         */
+        start[0]  = 1;
+        stride[0] = 1;
+        count[0]  = 48;
+        block[0]  = 1;
+        mspace1.selectHyperslab( H5S_SELECT_SET, count, start, stride, block);
+
+        /*
+         * Write selection from the vector buffer to the dataset in the file.
+         *
+         * File dataset should look like this:
+         *                    0  1  2  0  3  4  0  5  6  0  7  8
+         *                    0  9 10  0 11 12  0 13 14  0 15 16
+         *                    0 17 18  0 19 20  0 21 22  0 23 24
+         *                    0  0  0  0  0  0  0  0  0  0  0  0
+         *                    0 25 26  0 27 28  0 29 30  0 31 32
+         *                    0 33 34  0 35 36  0 37 38  0 39 40
+         *                    0 41 42  0 43 44  0 45 46  0 47 48
+         *                    0  0  0  0  0  0  0  0  0  0  0  0
+         */
+        int    vector[MSPACE1_DIM];     // vector buffer for dset
+
+        /*
+         * Buffer initialization.
+         */
+        vector[0] = vector[MSPACE1_DIM - 1] = -1;
+        for (i = 1; i < MSPACE1_DIM - 1; i++)
+            vector[i] = i;
+
+        dataset->write( vector, PredType::NATIVE_INT, mspace1, fspace );
+
+        /*
+         * Reset the selection for the file dataspace fid.
+         */
+        fspace.selectNone();
+
+        /*
+         * Create dataspace for the second dataset.
+         */
+        hsize_t dim2[] = {MSPACE2_DIM};  /* Dimension size of the second dataset
+                                           (in memory */
+        DataSpace mspace2( MSPACE2_RANK, dim2 );
+
+        /*
+         * Select sequence of NPOINTS points in the file dataspace.
+         */
+        hsize_t coord[NPOINTS][FSPACE_RANK]; /* Array to store selected points
+                                                from the file dataspace */
+        coord[0][0] = 0; coord[0][1] = 0;
+        coord[1][0] = 3; coord[1][1] = 3;
+        coord[2][0] = 3; coord[2][1] = 5;
+        coord[3][0] = 5; coord[3][1] = 6;
+
+        fspace.selectElements( H5S_SELECT_SET, NPOINTS, (const hsize_t *)coord);
+
+        /*
+         * Write new selection of points to the dataset.
+         */
+        int    values[] = {53, 59, 61, 67};  /* New values to be written */
+        dataset->write( values, PredType::NATIVE_INT, mspace2, fspace );
+
+        /*
+         * File dataset should look like this:
+         *                   53  1  2  0  3  4  0  5  6  0  7  8
+         *                    0  9 10  0 11 12  0 13 14  0 15 16
+         *                    0 17 18  0 19 20  0 21 22  0 23 24
+         *                    0  0  0 59  0 61  0  0  0  0  0  0
+         *                    0 25 26  0 27 28  0 29 30  0 31 32
+         *                    0 33 34  0 35 36 67 37 38  0 39 40
+         *                    0 41 42  0 43 44  0 45 46  0 47 48
+         *                    0  0  0  0  0  0  0  0  0  0  0  0
+         *
+         */
+
+        /*
+         * Close the dataset and the file.
+         */
+        delete dataset;
+        delete file;
+
+        /*
+         * Open the file.
+         */
+        file = new H5File( FILE_NAME, H5F_ACC_RDONLY );
+
+        /*
+         * Open the dataset.
+         */
+        dataset = new DataSet( file->openDataSet( DATASET_NAME ));
+
+        /*
+         * Get dataspace of the dataset.
+         */
+        fspace = dataset->getSpace();
+
+        /*
+         * Select first hyperslab for the dataset in the file. The following
+         * elements are selected:
+         *                     10  0 11 12
+         *                     18  0 19 20
+         *                      0 59  0 61
+         *
+         */
+        start[0] = 1; start[1] = 2;
+        block[0] = 1; block[1] = 1;
+        stride[0] = 1; stride[1] = 1;
+        count[0]  = 3; count[1]  = 4;
+        fspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
+
+        /*
+         * Add second selected hyperslab to the selection.
+         * The following elements are selected:
+         *                    19 20  0 21 22
+         *                     0 61  0  0  0
+         *                    27 28  0 29 30
+         *                    35 36 67 37 38
+         *                    43 44  0 45 46
+         *                     0  0  0  0  0
+         * Note that two hyperslabs overlap. Common elements are:
+         *                                              19 20
+         *                                               0 61
+         */
+        start[0] = 2; start[1] = 4;
+        block[0] = 1; block[1] = 1;
+        stride[0] = 1; stride[1] = 1;
+        count[0]  = 6; count[1]  = 5;
+        fspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block);
+
+        /*
+         * Create memory dataspace.
+         */
+        hsize_t mdim[] = {MSPACE_DIM1, MSPACE_DIM2}; /* Dimension sizes of the
                                                    dataset in memory when we
                                                    read selection from the
                                                    dataset on the disk */
-	DataSpace mspace(MSPACE_RANK, mdim);
-
-	/*
-	 * Select two hyperslabs in memory. Hyperslabs has the same
-	 * size and shape as the selected hyperslabs for the file dataspace.
-	 */
-	start[0] = 0; start[1] = 0;
-	block[0] = 1; block[1] = 1;
-	stride[0] = 1; stride[1] = 1;
-	count[0]  = 3; count[1]  = 4;
-	mspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
-	start[0] = 1; start[1] = 2;
-	block[0] = 1; block[1] = 1;
-	stride[0] = 1; stride[1] = 1;
-	count[0]  = 6; count[1]  = 5;
-	mspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block);
-
-	/*
-	 * Initialize data buffer.
-	 */
-	int matrix_out[MSPACE_DIM1][MSPACE_DIM2];
-	for (i = 0; i < MSPACE_DIM1; i++)
-	    for (j = 0; j < MSPACE_DIM2; j++)
-		matrix_out[i][j] = 0;
-
-	/*
-	 * Read data back to the buffer matrix.
-	 */
-	dataset->read(matrix_out, PredType::NATIVE_INT, mspace, fspace);
-
-	/*
-	 * Display the result.  Memory dataset is:
-	 *
-	 *                    10  0 11 12  0  0  0  0  0
-	 *                    18  0 19 20  0 21 22  0  0
-	 *                     0 59  0 61  0  0  0  0  0
-	 *                     0  0 27 28  0 29 30  0  0
-	 *                     0  0 35 36 67 37 38  0  0
-	 *                     0  0 43 44  0 45 46  0  0
-	 *                     0  0  0  0  0  0  0  0  0
-	 *                     0  0  0  0  0  0  0  0  0
-	 */
-	for (i=0; i < MSPACE_DIM1; i++)
-	{
-	    for(j=0; j < MSPACE_DIM2; j++)
-		cout << matrix_out[i][j] << "  ";
-	    cout << endl;
-	}
-
-	/*
-	 * Close the dataset and the file.
-	 */
-	delete dataset;
-	delete file;
+        DataSpace mspace(MSPACE_RANK, mdim);
+
+        /*
+         * Select two hyperslabs in memory. Hyperslabs has the same
+         * size and shape as the selected hyperslabs for the file dataspace.
+         */
+        start[0] = 0; start[1] = 0;
+        block[0] = 1; block[1] = 1;
+        stride[0] = 1; stride[1] = 1;
+        count[0]  = 3; count[1]  = 4;
+        mspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
+        start[0] = 1; start[1] = 2;
+        block[0] = 1; block[1] = 1;
+        stride[0] = 1; stride[1] = 1;
+        count[0]  = 6; count[1]  = 5;
+        mspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block);
+
+        /*
+         * Initialize data buffer.
+         */
+        int matrix_out[MSPACE_DIM1][MSPACE_DIM2];
+        for (i = 0; i < MSPACE_DIM1; i++)
+            for (j = 0; j < MSPACE_DIM2; j++)
+                matrix_out[i][j] = 0;
+
+        /*
+         * Read data back to the buffer matrix.
+         */
+        dataset->read(matrix_out, PredType::NATIVE_INT, mspace, fspace);
+
+        /*
+         * Display the result.  Memory dataset is:
+         *
+         *                    10  0 11 12  0  0  0  0  0
+         *                    18  0 19 20  0 21 22  0  0
+         *                     0 59  0 61  0  0  0  0  0
+         *                     0  0 27 28  0 29 30  0  0
+         *                     0  0 35 36 67 37 38  0  0
+         *                     0  0 43 44  0 45 46  0  0
+         *                     0  0  0  0  0  0  0  0  0
+         *                     0  0  0  0  0  0  0  0  0
+         */
+        for (i=0; i < MSPACE_DIM1; i++)
+        {
+            for(j=0; j < MSPACE_DIM2; j++)
+                cout << matrix_out[i][j] << "  ";
+            cout << endl;
+        }
+
+        /*
+         * Close the dataset and the file.
+         */
+        delete dataset;
+        delete file;
    }  // end of try block
 
    // catch failure caused by the H5File operations
    catch( FileIException error )
    {
-	error.printError();
-	return -1;
+        error.printError();
+        return -1;
    }
 
    // catch failure caused by the DataSet operations
    catch( DataSetIException error )
    {
-	error.printError();
-	return -1;
+        error.printError();
+        return -1;
    }
 
    // catch failure caused by the DataSpace operations
    catch( DataSpaceIException error )
    {
-	error.printError();
-	return -1;
+        error.printError();
+        return -1;
    }
 
    return 0;