Clang-format of source files

1 files changed, 194 insertions, 191 deletions

diff --git a/c++/test/trefer.cpp b/c++/test/trefer.cpp
index b46ae29..beba36a 100644
--- a/c++/test/trefer.cpp
+++ b/c++/test/trefer.cpp
@@ -26,22 +26,22 @@ using std::cerr;
 using std::endl;
 
 #include <string>
-#include "H5Cpp.h"      // C++ API header file
+#include "H5Cpp.h" // C++ API header file
 using namespace H5;
 
 #include "h5test.h"
-#include "h5cpputil.h"  // C++ utilility header file
+#include "h5cpputil.h" // C++ utilility header file
 
-const H5std_string      FILE1("trefer1.h5");
-const H5std_string      FILE2("trefer2.h5");
+const H5std_string FILE1("trefer1.h5");
+const H5std_string FILE2("trefer2.h5");
 
 // Dataset 1
-const H5std_string      DSET1_NAME("Dataset1");
-const H5std_string      DSET2_NAME("Dataset2");
+const H5std_string DSET1_NAME("Dataset1");
+const H5std_string DSET2_NAME("Dataset2");
 
-const H5std_string MEMBER1( "a_name" );
-const H5std_string MEMBER2( "b_name" );
-const H5std_string MEMBER3( "c_name" );
+const H5std_string MEMBER1("a_name");
+const H5std_string MEMBER2("b_name");
+const H5std_string MEMBER3("c_name");
 
 // 1-D dataset with fixed dimensions
 const int SPACE1_RANK = 1;
@@ -58,10 +58,9 @@ const int POINT1_NPOINTS = 10;
 typedef struct s1_t {
     unsigned int a;
     unsigned int b;
-    float c;
+    float        c;
 } s1_t;
 
-
 /*-------------------------------------------------------------------------
  * Function:    test_reference_params
  *
@@ -70,30 +69,31 @@ typedef struct s1_t {
  * Return       None
  *-------------------------------------------------------------------------
  */
-static void test_reference_params()
+static void
+test_reference_params()
 {
     const char *write_comment = "Foo!"; /* Comments for group */
 
     // Output message about test being performed
     SUBTEST("Object Reference Parameters");
 
-    H5File* file1 = NULL;
+    H5File *file1 = NULL;
     try {
-        hobj_ref_t *wbuf,      // buffer to write to disk
-                   *rbuf,      // buffer read from disk
-                   *tbuf;      // temp. buffer read from disk
+        hobj_ref_t *wbuf, // buffer to write to disk
+            *rbuf,        // buffer read from disk
+            *tbuf;        // temp. buffer read from disk
 
         // Allocate write & read buffers
-        int temp_size = MAX(sizeof(unsigned),sizeof(hobj_ref_t));
-        wbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1);
-        rbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1);
-        tbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1);
+        int temp_size = MAX(sizeof(unsigned), sizeof(hobj_ref_t));
+        wbuf          = (hobj_ref_t *)HDmalloc(temp_size * SPACE1_DIM1);
+        rbuf          = (hobj_ref_t *)HDmalloc(temp_size * SPACE1_DIM1);
+        tbuf          = (hobj_ref_t *)HDmalloc(temp_size * SPACE1_DIM1);
 
         // Create file FILE1
-        file1 = new H5File (FILE1, H5F_ACC_TRUNC);
+        file1 = new H5File(FILE1, H5F_ACC_TRUNC);
 
         // Create dataspace for datasets
-        hsize_t dims1[] = {SPACE1_DIM1};
+        hsize_t   dims1[] = {SPACE1_DIM1};
         DataSpace sid1(SPACE1_RANK, dims1);
 
         // Create a group
@@ -105,10 +105,10 @@ static void test_reference_params()
         // Create a dataset (inside /Group1)
         DataSet dataset = group.createDataSet(DSET1_NAME, PredType::NATIVE_UINT, sid1);
 
-        unsigned *tu32;      // Temporary pointer to uint32 data
-        int i;
-        for (tu32=(unsigned *)wbuf, i=0; i<SPACE1_DIM1; i++)
-            *tu32++=i*3; // from C test
+        unsigned *tu32; // Temporary pointer to uint32 data
+        int       i;
+        for (tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++)
+            *tu32++ = i * 3; // from C test
 
         // Write selection to disk
         dataset.write(wbuf, PredType::NATIVE_UINT);
@@ -143,19 +143,29 @@ static void test_reference_params()
         /* Test parameters to H5Location::reference */
         try {
             file1->reference(NULL, "/Group1/Dataset1");
-        } catch (ReferenceException& E) {} // We expect this to fail
+        }
+        catch (ReferenceException &E) {
+        } // We expect this to fail
         try {
             file1->reference(&wbuf[0], NULL);
-        } catch (ReferenceException& E) {} // We expect this to fail
+        }
+        catch (ReferenceException &E) {
+        } // We expect this to fail
         try {
             file1->reference(&wbuf[0], "");
-        } catch (ReferenceException& E) {} // We expect this to fail
+        }
+        catch (ReferenceException &E) {
+        } // We expect this to fail
         try {
             file1->reference(&wbuf[0], "/Group1/Dataset1", H5R_MAXTYPE);
-        } catch (ReferenceException& E) {} // We expect this to fail
+        }
+        catch (ReferenceException &E) {
+        } // We expect this to fail
         try {
             file1->reference(&wbuf[0], "/Group1/Dataset1", H5R_DATASET_REGION);
-        } catch (ReferenceException& E) {} // We expect this to fail
+        }
+        catch (ReferenceException &E) {
+        } // We expect this to fail
 
         // Close resources
         dataset.close();
@@ -169,17 +179,14 @@ static void test_reference_params()
 
         PASSED();
     } // end try
-    catch (Exception& E)
-    {
-        issue_fail_msg("test_reference_param()",__LINE__,__FILE__,
-                        E.getCFuncName(), E.getCDetailMsg());
+    catch (Exception &E) {
+        issue_fail_msg("test_reference_param()", __LINE__, __FILE__, E.getCFuncName(), E.getCDetailMsg());
     }
 
-    if(file1)
+    if (file1)
         delete file1;
-}   /* test_reference_param() */
+} /* test_reference_param() */
 
-
 /*-------------------------------------------------------------------------
  * Function:    test_reference_obj
  *
@@ -189,31 +196,32 @@ static void test_reference_params()
  * Return       None
  *-------------------------------------------------------------------------
  */
-static void test_reference_obj()
+static void
+test_reference_obj()
 {
-    int    i;          // counting variables
-    const  H5std_string write_comment="Foo!"; // Comments for group
+    int                i;                      // counting variables
+    const H5std_string write_comment = "Foo!"; // Comments for group
 
     // Output message about test being performed
     SUBTEST("Object Reference Functions");
 
-    H5File* file1 = NULL;
+    H5File *file1 = NULL;
     try {
-        hobj_ref_t *wbuf,      // buffer to write to disk
-                   *rbuf,      // buffer read from disk
-                   *tbuf;      // temp. buffer read from disk
+        hobj_ref_t *wbuf, // buffer to write to disk
+            *rbuf,        // buffer read from disk
+            *tbuf;        // temp. buffer read from disk
 
         // Allocate write & read buffers
-        int temp_size = MAX(sizeof(unsigned),sizeof(hobj_ref_t));
-        wbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1);
-        rbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1);
-        tbuf=(hobj_ref_t*)HDmalloc(temp_size*SPACE1_DIM1);
+        int temp_size = MAX(sizeof(unsigned), sizeof(hobj_ref_t));
+        wbuf          = (hobj_ref_t *)HDmalloc(temp_size * SPACE1_DIM1);
+        rbuf          = (hobj_ref_t *)HDmalloc(temp_size * SPACE1_DIM1);
+        tbuf          = (hobj_ref_t *)HDmalloc(temp_size * SPACE1_DIM1);
 
         // Create file FILE1
-        file1 = new H5File (FILE1, H5F_ACC_TRUNC);
+        file1 = new H5File(FILE1, H5F_ACC_TRUNC);
 
         // Create dataspace for datasets
-        hsize_t dims1[] = {SPACE1_DIM1};
+        hsize_t   dims1[] = {SPACE1_DIM1};
         DataSpace sid1(SPACE1_RANK, dims1);
 
         // Create dataset access property list
@@ -228,9 +236,9 @@ static void test_reference_obj()
         // Create a dataset (inside /Group1)
         DataSet dataset = group.createDataSet(DSET1_NAME, PredType::NATIVE_UINT, sid1);
 
-        unsigned *tu32;      // Temporary pointer to uint32 data
+        unsigned *tu32; // Temporary pointer to uint32 data
         for (tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++)
-            *tu32++=i*3; // from C test
+            *tu32++ = i * 3; // from C test
 
         // Write selection to disk
         dataset.write(wbuf, PredType::NATIVE_UINT);
@@ -265,22 +273,22 @@ static void test_reference_obj()
         // Create reference to dataset and test getRefObjType
         file1->reference(&wbuf[0], "/Group1/Dataset1");
         H5O_type_t refobj_type = dataset.getRefObjType(&wbuf[0], H5R_OBJECT);
-        verify_val(refobj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType",__LINE__,__FILE__);
+        verify_val(refobj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType", __LINE__, __FILE__);
 
         // Create reference to dataset and test getRefObjType
         file1->reference(&wbuf[1], "/Group1/Dataset2");
         refobj_type = dataset.getRefObjType(&wbuf[1], H5R_OBJECT);
-        verify_val(refobj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType",__LINE__,__FILE__);
+        verify_val(refobj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType", __LINE__, __FILE__);
 
         // Create reference to group
         file1->reference(&wbuf[2], "/Group1");
         refobj_type = dataset.getRefObjType(&wbuf[2], H5R_OBJECT);
-        verify_val(refobj_type, H5O_TYPE_GROUP, "DataSet::getRefObjType",__LINE__,__FILE__);
+        verify_val(refobj_type, H5O_TYPE_GROUP, "DataSet::getRefObjType", __LINE__, __FILE__);
 
         // Create reference to named datatype
         file1->reference(&wbuf[3], "/Group1/Datatype1");
         refobj_type = dataset.getRefObjType(&wbuf[3], H5R_OBJECT);
-        verify_val(refobj_type, H5O_TYPE_NAMED_DATATYPE, "DataSet::getRefObjType",__LINE__,__FILE__);
+        verify_val(refobj_type, H5O_TYPE_NAMED_DATATYPE, "DataSet::getRefObjType", __LINE__, __FILE__);
 
         // Write selection to disk
         dataset.write(wbuf, PredType::STD_REF_OBJ);
@@ -304,15 +312,15 @@ static void test_reference_obj()
         DataSet dset2(dataset, &rbuf[0], H5R_OBJECT, dapl);
 
         // Check information in the referenced dataset
-        sid1 = dset2.getSpace();
+        sid1                = dset2.getSpace();
         hssize_t n_elements = sid1.getSimpleExtentNpoints();
-        verify_val((long)n_elements, 4, "DataSpace::getSimpleExtentNpoints",__LINE__,__FILE__);
+        verify_val((long)n_elements, 4, "DataSpace::getSimpleExtentNpoints", __LINE__, __FILE__);
 
         // Read from disk
         dset2.read(tbuf, PredType::NATIVE_UINT);
 
-        for(tu32 = (unsigned *)tbuf, i = 0; i < SPACE1_DIM1; i++, tu32++)
-            verify_val(*tu32, (uint32_t)(i*3), "DataSpace::getSimpleExtentNpoints",__LINE__,__FILE__);
+        for (tu32 = (unsigned *)tbuf, i = 0; i < SPACE1_DIM1; i++, tu32++)
+            verify_val(*tu32, (uint32_t)(i * 3), "DataSpace::getSimpleExtentNpoints", __LINE__, __FILE__);
 
         // Close dereferenced dataset
         dset2.close();
@@ -323,18 +331,19 @@ static void test_reference_obj()
         // Get group's comment using
         // H5std_string getComment(const char* name, <buf_size=0 by default>)
         H5std_string read_comment1 = group.getComment(".", 10);
-        verify_val(read_comment1.c_str(), write_comment, "Group::getComment",__LINE__,__FILE__);
+        verify_val(read_comment1.c_str(), write_comment, "Group::getComment", __LINE__, __FILE__);
 
         // Test with the old default value
         read_comment1 = group.getComment(".", 256);
-        verify_val(read_comment1.c_str(), write_comment, "Group::getComment",__LINE__,__FILE__);
+        verify_val(read_comment1.c_str(), write_comment, "Group::getComment", __LINE__, __FILE__);
 
         // Test that getComment handles failures gracefully, using
         // H5std_string getComment(const char* name, <buf_size=0 by default>)
         try {
             H5std_string read_comment_tmp = group.getComment(NULL);
         }
-        catch (Exception& E) {} // We expect this to fail
+        catch (Exception &E) {
+        } // We expect this to fail
 
         // Close group
         group.close();
@@ -349,9 +358,9 @@ static void test_reference_obj()
         H5T_class_t tclass;
 
         tclass = dtype1.getClass();
-        verify_val(tclass, H5T_COMPOUND, "DataType::getClass",__LINE__,__FILE__);
+        verify_val(tclass, H5T_COMPOUND, "DataType::getClass", __LINE__, __FILE__);
         int n_members = dtype1.getNmembers();
-        verify_val(n_members, 3, "CompType::getNmembers",__LINE__,__FILE__);
+        verify_val(n_members, 3, "CompType::getNmembers", __LINE__, __FILE__);
 
         // Close all objects and file
         dtype1.close();
@@ -365,17 +374,14 @@ static void test_reference_obj()
 
         PASSED();
     } // end try
-    catch (Exception& E)
-    {
-        issue_fail_msg("test_reference_obj()",__LINE__,__FILE__,
-                        E.getCFuncName(), E.getCDetailMsg());
+    catch (Exception &E) {
+        issue_fail_msg("test_reference_obj()", __LINE__, __FILE__, E.getCFuncName(), E.getCDetailMsg());
     }
 
-    if(file1)
+    if (file1)
         delete file1;
-}   // test_reference_obj()
+} // test_reference_obj()
 
-
 /*-------------------------------------------------------------------------
  * Function:    test_reference_group
  *
@@ -384,23 +390,24 @@ static void test_reference_obj()
  * Return       None
  *-------------------------------------------------------------------------
  */
-#define GROUPNAME       "/group"
-#define GROUPNAME2      "group2"
-#define GROUPNAME3      "group3"
-#define DSETNAME        "/dset"
-#define DSETNAME2       "dset2"
-#define NAME_SIZE       16
-
-static void test_reference_group()
+#define GROUPNAME  "/group"
+#define GROUPNAME2 "group2"
+#define GROUPNAME3 "group3"
+#define DSETNAME   "/dset"
+#define DSETNAME2  "dset2"
+#define NAME_SIZE  16
+
+static void
+test_reference_group()
 {
-    hobj_ref_t wref;        /* Reference to write */
-    hobj_ref_t rref;        /* Reference to read */
-    const  H5std_string write_comment="Foo!"; // Comments for group
+    hobj_ref_t         wref;                   /* Reference to write */
+    hobj_ref_t         rref;                   /* Reference to read */
+    const H5std_string write_comment = "Foo!"; // Comments for group
 
     // Output message about test being performed
     SUBTEST("Object Reference to Group");
 
-    H5File* file1 = NULL;
+    H5File *file1 = NULL;
     try {
         /*
          * Create file with a group and a dataset containing an object
@@ -408,7 +415,7 @@ static void test_reference_group()
          */
 
         // Create file FILE1
-        file1 = new H5File (FILE1, H5F_ACC_TRUNC);
+        file1 = new H5File(FILE1, H5F_ACC_TRUNC);
 
         // Create scalar dataspace
         DataSpace sid1;
@@ -467,25 +474,25 @@ static void test_reference_group()
 
         // Check number of objects in the group dereferenced by constructor
         hsize_t nobjs = refgroup.getNumObjs();
-        verify_val(nobjs, (hsize_t)3, "H5Group::getNumObjs",__LINE__,__FILE__);
+        verify_val(nobjs, (hsize_t)3, "H5Group::getNumObjs", __LINE__, __FILE__);
 
         // Check number of objects in the group dereferenced by ::reference
         nobjs = group.getNumObjs();
-        verify_val(nobjs, (hsize_t)3, "H5Group::getNumObjs",__LINE__,__FILE__);
+        verify_val(nobjs, (hsize_t)3, "H5Group::getNumObjs", __LINE__, __FILE__);
 
         // Check getting file name given the group dereferenced via constructor
         H5std_string fname = refgroup.getFileName();
-        verify_val(fname, FILE1, "H5Group::getFileName",__LINE__,__FILE__);
+        verify_val(fname, FILE1, "H5Group::getFileName", __LINE__, __FILE__);
 
         // Check getting file name given the group dereferenced by ::reference
         fname = group.getFileName();
-        verify_val(fname, FILE1, "H5Group::getFileName",__LINE__,__FILE__);
+        verify_val(fname, FILE1, "H5Group::getFileName", __LINE__, __FILE__);
 
         // Check object type using Group::getObjinfo()
         H5O_info2_t oinfo;
         HDmemset(&oinfo, 0, sizeof(oinfo));
         group.getObjinfo(".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, oinfo);
-        verify_val(oinfo.type, H5O_TYPE_DATASET, "Group::getObjinfo",__LINE__,__FILE__);
+        verify_val(oinfo.type, H5O_TYPE_DATASET, "Group::getObjinfo", __LINE__, __FILE__);
 
         // Check for out of bound query by index
         try {
@@ -494,12 +501,14 @@ static void test_reference_group()
 
             // Should FAIL but didn't, so throw an invalid action exception
             throw InvalidActionException("Group::getObjinfo", "Out of bound index.");
-        } catch (Exception& err) {} // do nothing, failure expected
+        }
+        catch (Exception &err) {
+        } // do nothing, failure expected
 
         // Unlink one of the objects in the dereferenced group, and re-check
         refgroup.unlink(GROUPNAME2);
         nobjs = refgroup.getNumObjs();
-        verify_val(nobjs, (hsize_t)2, "H5Group::getNumObjs",__LINE__,__FILE__);
+        verify_val(nobjs, (hsize_t)2, "H5Group::getNumObjs", __LINE__, __FILE__);
 
         // Close resources
         group.close();
@@ -509,17 +518,14 @@ static void test_reference_group()
 
         PASSED();
     } // end try
-    catch (Exception& E)
-    {
-        issue_fail_msg("test_reference_group()",__LINE__,__FILE__,
-                        E.getCFuncName(), E.getCDetailMsg());
+    catch (Exception &E) {
+        issue_fail_msg("test_reference_group()", __LINE__, __FILE__, E.getCFuncName(), E.getCDetailMsg());
     }
 
-    if(file1)
+    if (file1)
         delete file1;
-}   /* test_reference_group() */
+} /* test_reference_group() */
 
-
 /*-------------------------------------------------------------------------
  * Function:    test_reference_region_1D
  *
@@ -528,30 +534,31 @@ static void test_reference_group()
  * Return       None
  *-------------------------------------------------------------------------
  */
-static void test_reference_region_1D()
+static void
+test_reference_region_1D()
 {
-    hsize_t        start[SPACE3_RANK];     /* Starting location of hyperslab */
-    hsize_t        stride[SPACE3_RANK];    /* Stride of hyperslab */
-    hsize_t        count[SPACE3_RANK];     /* Element count of hyperslab */
-    hsize_t        block[SPACE3_RANK];     /* Block size of hyperslab */
-    hsize_t        coord1[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */
-    hsize_t *   coords;                 /* Coordinate buffer */
-    hsize_t        low[SPACE3_RANK];       /* Selection bounds */
-    hsize_t        high[SPACE3_RANK];      /* Selection bounds */
-    int         i;      /* counting variables */
+    hsize_t  start[SPACE3_RANK];                  /* Starting location of hyperslab */
+    hsize_t  stride[SPACE3_RANK];                 /* Stride of hyperslab */
+    hsize_t  count[SPACE3_RANK];                  /* Element count of hyperslab */
+    hsize_t  block[SPACE3_RANK];                  /* Block size of hyperslab */
+    hsize_t  coord1[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */
+    hsize_t *coords;                              /* Coordinate buffer */
+    hsize_t  low[SPACE3_RANK];                    /* Selection bounds */
+    hsize_t  high[SPACE3_RANK];                   /* Selection bounds */
+    int      i;                                   /* counting variables */
 
     // Output message about test being performed
     SUBTEST("1-D Dataset Region Reference Functions");
 
     try {
-        hdset_reg_ref_t *wbuf,   // buffer to write to disk
-                   *rbuf;        // buffer read from disk
-        uint8_t    *dwbuf,       // Buffer for writing numeric data to disk
-                   *drbuf;       // Buffer for reading numeric data from disk
+        hdset_reg_ref_t *wbuf, // buffer to write to disk
+            *rbuf;             // buffer read from disk
+        uint8_t *dwbuf,        // Buffer for writing numeric data to disk
+            *drbuf;            // Buffer for reading numeric data from disk
 
         // Allocate write & read buffers
-        wbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
-        rbuf = (hdset_reg_ref_t *)HDmalloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1);
+        wbuf  = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
+        rbuf  = (hdset_reg_ref_t *)HDmalloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1);
         dwbuf = (uint8_t *)HDmalloc(sizeof(uint8_t) * SPACE3_DIM1);
         drbuf = (uint8_t *)HDcalloc(sizeof(uint8_t), (size_t)SPACE3_DIM1);
 
@@ -559,7 +566,7 @@ static void test_reference_region_1D()
         H5File file1(FILE2, H5F_ACC_TRUNC);
 
         // Create dataspace for datasets
-        hsize_t dims3[] = {SPACE3_DIM1};
+        hsize_t   dims3[] = {SPACE3_DIM1};
         DataSpace sid3(SPACE3_RANK, dims3);
 
         // Create dataset access property list
@@ -568,7 +575,7 @@ static void test_reference_region_1D()
         // Create a dataset
         DataSet dset3 = file1.createDataSet(DSET2_NAME, PredType::STD_U8LE, sid3);
 
-        uint8_t *tu8;      // Temporary pointer to uint8 data
+        uint8_t *tu8; // Temporary pointer to uint8 data
         for (tu8 = dwbuf, i = 0; i < SPACE3_DIM1; i++)
             *tu8++ = i * 3; // from C test
 
@@ -579,7 +586,7 @@ static void test_reference_region_1D()
         dset3.close();
 
         // Create dataspace for datasets
-        hsize_t dims1[] = {SPACE1_DIM1};
+        hsize_t   dims1[] = {SPACE1_DIM1};
         DataSpace sid1(SPACE1_RANK, dims1);
 
         // Create a dataset
@@ -590,24 +597,24 @@ static void test_reference_region_1D()
          */
 
         /* Select 15 2x1 hyperslabs for first reference */
-        start[0] = 2;
+        start[0]  = 2;
         stride[0] = 5;
-        count[0] = 15;
-        block[0] = 2;
+        count[0]  = 15;
+        block[0]  = 2;
 
         // Select a hyperslab region to add to the current selected region
         sid3.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
 
         // Get and verify the number of elements in a dataspace selection
         hssize_t nelms = sid3.getSelectNpoints();
-        verify_val(nelms, 30, "DataSet::getRefObjType",__LINE__,__FILE__);
+        verify_val(nelms, 30, "DataSet::getRefObjType", __LINE__, __FILE__);
 
         // Store first dataset region
         file1.reference(&wbuf[0], "/Dataset2", sid3);
 
         // Get and verify object type
         H5O_type_t obj_type = dset1.getRefObjType(&wbuf[0], H5R_DATASET_REGION);
-        verify_val(obj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType",__LINE__,__FILE__);
+        verify_val(obj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType", __LINE__, __FILE__);
 
         /* Select sequence of ten points for second reference */
         coord1[0][0] = 16;
@@ -626,7 +633,7 @@ static void test_reference_region_1D()
 
         // Get and verify the number of elements in a dataspace selection
         nelms = sid3.getSelectNpoints();
-        verify_val(nelms, 10, "DataSet::getRefObjType",__LINE__,__FILE__);
+        verify_val(nelms, 10, "DataSet::getRefObjType", __LINE__, __FILE__);
 
         // Store first dataset region
         file1.reference(&wbuf[1], "/Dataset2", sid3);
@@ -658,12 +665,12 @@ static void test_reference_region_1D()
 
             // Get and verify object type
             obj_type = dset1.getRefObjType(&rbuf[0], H5R_DATASET_REGION);
-            verify_val(obj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType",__LINE__,__FILE__);
+            verify_val(obj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType", __LINE__, __FILE__);
 
             // Get dataspace of dset3 the verify number of elements
-            sid1 = dset3.getSpace();
+            sid1  = dset3.getSpace();
             nelms = sid1.getSimpleExtentNpoints();
-            verify_val((long)nelms, 100, "DataSpace::getSimpleExtentNpoints",__LINE__,__FILE__);
+            verify_val((long)nelms, 100, "DataSpace::getSimpleExtentNpoints", __LINE__, __FILE__);
         } // End of test DataSet::dereference
 
         { // Test DataSet constructor -by dereference
@@ -672,9 +679,9 @@ static void test_reference_region_1D()
             DataSet newds(dset1, &rbuf[0], H5R_DATASET_REGION, dapl);
 
             // Get dataspace of newds then verify number of elements
-            sid1 = newds.getSpace();
+            sid1  = newds.getSpace();
             nelms = sid1.getSimpleExtentNpoints();
-            verify_val((long)nelms, 100, "DataSpace::getSimpleExtentNpoints",__LINE__,__FILE__);
+            verify_val((long)nelms, 100, "DataSpace::getSimpleExtentNpoints", __LINE__, __FILE__);
 
             // Close objects for this mini test
             newds.close();
@@ -684,8 +691,8 @@ static void test_reference_region_1D()
         // Read from disk
         dset3.read(drbuf, PredType::STD_U8LE);
 
-        for(tu8 = (uint8_t *)drbuf, i = 0; i < SPACE3_DIM1; i++, tu8++)
-            verify_val(*tu8, (uint8_t)(i * 3), "DataSpace::getSimpleExtentNpoints",__LINE__,__FILE__);
+        for (tu8 = (uint8_t *)drbuf, i = 0; i < SPACE3_DIM1; i++, tu8++)
+            verify_val(*tu8, (uint8_t)(i * 3), "DataSpace::getSimpleExtentNpoints", __LINE__, __FILE__);
 
         /*
          * Test getting the referenced region
@@ -696,11 +703,11 @@ static void test_reference_region_1D()
 
         // Get and verify number of elements in a dataspace selection
         nelms = reg_sp.getSelectNpoints();
-        verify_val((long)nelms, 30, "DataSpace::getSelectNpoints",__LINE__,__FILE__);
+        verify_val((long)nelms, 30, "DataSpace::getSelectNpoints", __LINE__, __FILE__);
 
         // Get and verify number of hyperslab blocks
         nelms = reg_sp.getSelectHyperNblocks();
-        verify_val((long)nelms, 15, "DataSpace::getSelectNpoints",__LINE__,__FILE__);
+        verify_val((long)nelms, 15, "DataSpace::getSelectNpoints", __LINE__, __FILE__);
 
         /* Allocate space for the hyperslab blocks */
         coords = (hsize_t *)HDmalloc(nelms * SPACE3_RANK * sizeof(hsize_t) * 2);
@@ -709,43 +716,43 @@ static void test_reference_region_1D()
         reg_sp.getSelectHyperBlocklist((hsize_t)0, (hsize_t)nelms, coords);
 
         // Verify values in the list
-        verify_val(coords[0], (hsize_t)2, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[1], (hsize_t)3, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[2], (hsize_t)7, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[3], (hsize_t)8, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[4],(hsize_t)12, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[5],(hsize_t)13, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[6],(hsize_t)17, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[7],(hsize_t)18, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[8],(hsize_t)22, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[9],(hsize_t)23, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[10],(hsize_t)27, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[11],(hsize_t)28, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[12],(hsize_t)32, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[13],(hsize_t)33, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[14],(hsize_t)37, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[15],(hsize_t)38, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[16],(hsize_t)42, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[17],(hsize_t)43, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[18],(hsize_t)47, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[19],(hsize_t)48, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[20],(hsize_t)52, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[21],(hsize_t)53, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[22],(hsize_t)57, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[23],(hsize_t)58, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[24],(hsize_t)62, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[25],(hsize_t)63, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[26],(hsize_t)67, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[27],(hsize_t)68, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[28],(hsize_t)72, "Hyperslab Coordinates",__LINE__,__FILE__);
-        verify_val(coords[29],(hsize_t)73, "Hyperslab Coordinates",__LINE__,__FILE__);
+        verify_val(coords[0], (hsize_t)2, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[1], (hsize_t)3, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[2], (hsize_t)7, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[3], (hsize_t)8, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[4], (hsize_t)12, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[5], (hsize_t)13, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[6], (hsize_t)17, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[7], (hsize_t)18, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[8], (hsize_t)22, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[9], (hsize_t)23, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[10], (hsize_t)27, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[11], (hsize_t)28, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[12], (hsize_t)32, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[13], (hsize_t)33, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[14], (hsize_t)37, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[15], (hsize_t)38, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[16], (hsize_t)42, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[17], (hsize_t)43, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[18], (hsize_t)47, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[19], (hsize_t)48, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[20], (hsize_t)52, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[21], (hsize_t)53, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[22], (hsize_t)57, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[23], (hsize_t)58, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[24], (hsize_t)62, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[25], (hsize_t)63, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[26], (hsize_t)67, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[27], (hsize_t)68, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[28], (hsize_t)72, "Hyperslab Coordinates", __LINE__, __FILE__);
+        verify_val(coords[29], (hsize_t)73, "Hyperslab Coordinates", __LINE__, __FILE__);
 
         HDfree(coords);
 
         // Check boundaries
         reg_sp.getSelectBounds(low, high);
-        verify_val(low[0],(hsize_t)2, "DataSpace::getSelectBounds",__LINE__,__FILE__);
-        verify_val(high[0],(hsize_t)73, "DataSpace::getSelectBounds",__LINE__,__FILE__);
+        verify_val(low[0], (hsize_t)2, "DataSpace::getSelectBounds", __LINE__, __FILE__);
+        verify_val(high[0], (hsize_t)73, "DataSpace::getSelectBounds", __LINE__, __FILE__);
 
         /* Close region space */
         reg_sp.close();
@@ -759,7 +766,7 @@ static void test_reference_region_1D()
 
         // Get and verify number of element points in the current selection
         hssize_t nelmspts = elm_sp.getSelectElemNpoints();
-        verify_val((long)nelmspts, 10, "DataSpace::getSelectNpoints",__LINE__,__FILE__);
+        verify_val((long)nelmspts, 10, "DataSpace::getSelectNpoints", __LINE__, __FILE__);
 
         /* Allocate space for the hyperslab blocks */
         coords = (hsize_t *)HDmalloc(nelmspts * SPACE3_RANK * sizeof(hsize_t));
@@ -768,23 +775,23 @@ static void test_reference_region_1D()
         elm_sp.getSelectElemPointlist((hsize_t)0, (hsize_t)nelmspts, coords);
 
         // Verify points
-        verify_val(coords[0], coord1[0][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[1], coord1[1][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[2], coord1[2][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[3], coord1[3][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[4], coord1[4][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[5], coord1[5][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[6], coord1[6][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[7], coord1[7][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[8], coord1[8][0], "Element Coordinates",__LINE__,__FILE__);
-        verify_val(coords[9], coord1[9][0], "Element Coordinates",__LINE__,__FILE__);
+        verify_val(coords[0], coord1[0][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[1], coord1[1][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[2], coord1[2][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[3], coord1[3][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[4], coord1[4][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[5], coord1[5][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[6], coord1[6][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[7], coord1[7][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[8], coord1[8][0], "Element Coordinates", __LINE__, __FILE__);
+        verify_val(coords[9], coord1[9][0], "Element Coordinates", __LINE__, __FILE__);
 
         HDfree(coords);
 
         // Check boundaries
         elm_sp.getSelectBounds(low, high);
-        verify_val(low[0],(hsize_t)3, "DataSpace::getSelectBounds",__LINE__,__FILE__);
-        verify_val(high[0],(hsize_t)97, "DataSpace::getSelectBounds",__LINE__,__FILE__);
+        verify_val(low[0], (hsize_t)3, "DataSpace::getSelectBounds", __LINE__, __FILE__);
+        verify_val(high[0], (hsize_t)97, "DataSpace::getSelectBounds", __LINE__, __FILE__);
 
         // Close element space
         elm_sp.close();
@@ -803,12 +810,10 @@ static void test_reference_region_1D()
 
         PASSED();
     } // end try
-    catch (Exception& E)
-    {
-        issue_fail_msg("test_reference_region_1D()",__LINE__,__FILE__,
-                        E.getCFuncName(), E.getCDetailMsg());
+    catch (Exception &E) {
+        issue_fail_msg("test_reference_region_1D()", __LINE__, __FILE__, E.getCFuncName(), E.getCDetailMsg());
     }
-}   /* test_reference_region_1D() */
+} /* test_reference_region_1D() */
 
 /*-------------------------------------------------------------------------
  *
@@ -816,8 +821,8 @@ static void test_reference_region_1D()
  *
  *-------------------------------------------------------------------------
  */
-extern "C"
-void test_reference()
+extern "C" void
+test_reference()
 {
     // Output message about test being performed
     MESSAGE(5, ("Testing References\n"));
@@ -827,9 +832,8 @@ void test_reference()
     test_reference_group();     // Test group reference functionality
     test_reference_region_1D(); // Test 1-D reference functionality
 
-}   // test_reference()
+} // test_reference()
 
-
 /*-------------------------------------------------------------------------
  * Function:    cleanup_reference
  *
@@ -838,10 +842,9 @@ void test_reference()
  * Return       None
  *-------------------------------------------------------------------------
  */
-extern "C"
-void cleanup_reference()
+extern "C" void
+cleanup_reference()
 {
     HDremove(FILE1.c_str());
     HDremove(FILE2.c_str());
 }
-