Merge branch 'develop' into parallel_vds_develop

1 files changed, 126 insertions, 0 deletions

diff --git a/config/cmake/scripts/HPC/par-HDF5options.cmake b/config/cmake/scripts/HPC/par-HDF5options.cmake
new file mode 100644
index 0000000..c7b22b9
--- /dev/null
+++ b/config/cmake/scripts/HPC/par-HDF5options.cmake
@@ -0,0 +1,126 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+####  Change default configuration of options in config/cmake/cacheinit.cmake file        ###
+####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")                 ###
+#############################################################################################
+
+### uncomment/comment and change the following lines for other configuration options
+
+#############################################################################################
+####      maximum parallel processor count for build and test       ####
+set (MAX_PROC_COUNT 8)
+
+#############################################################################################
+####      alternate toolsets       ####
+#set (CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 17.0")
+
+#############################################################################################
+####      Only build static libraries       ####
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")
+####      Add PICC option on linux/mac       ####
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_ANSI_CFLAGS:STRING=-fPIC")
+
+#############################################################################################
+####      fortran enabled      ####
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
+####      fortran disabled      ####
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
+
+#############################################################################################
+####      java enabled      ####
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=ON")
+####      java disabled      ####
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+
+#############################################################################################
+### change install prefix (default use INSTALLDIR value)
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTALLDIR}")
+
+#############################################################################################
+####      ext libraries       ####
+
+### ext libs from tgz
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
+### ext libs from git
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT")
+### ext libs on system
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=NO")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
+
+### disable using ext zlib
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
+### disable using ext szip
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
+
+####      package examples       ####
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACK_EXAMPLES:BOOL=ON -DHDF5_EXAMPLES_COMPRESSED:STRING=HDF5Examples-1.12.4-Source.tar.gz -DHDF5_EXAMPLES_COMPRESSED_DIR:PATH=${CTEST_SCRIPT_DIRECTORY}")
+
+#############################################################################################
+### enable parallel builds
+
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
+
+#############################################################################################
+### enable thread-safety builds
+
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=ON")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_HL_LIB:BOOL=OFF")
+
+#############################################################################################
+### disable test program builds
+
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
+
+#############################################################################################
+### disable packaging
+
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
+### Create install package with external libraries (szip, zlib)
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
+
+
+#options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_COMMAND "sbatch")
+set (LOCAL_BATCH_TEST "TRUE")
+set (LOCAL_BATCH_SCRIPT_NAME "ctestS.sl")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctestP.sl")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=ctestS.sl")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=ctestP.sl")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=srun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
+
+
+#############################################################################################
+### use a toolchain file
+
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/intel.cmake")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/GCC.cmake")
+
+#some additions and alternatives to cross compile on haswell for knl
+#set (COMPILENODE_HWCOMPILE_MODULE "craype-haswell")
+#set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
+#set (SITE_BUILDNAME_SUFFIX "knl-intel17-SHARED"
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=knl_ctestS.sl")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=knl_ctestP.sl")
+#############################################################################################