Merge branch 'develop' into vol_dev_headers

Also moved the wrapper functions from the H5VLconnector.h to
H5VLconnector_passthru.h

6 files changed, 37 insertions, 59 deletions

diff --git a/config/cmake/jrunTest.cmake b/config/cmake/jrunTest.cmake
index 95c7583..fc49275 100644
--- a/config/cmake/jrunTest.cmake
+++ b/config/cmake/jrunTest.cmake
@@ -51,6 +51,8 @@ message (STATUS "COMMAND: ${TEST_TESTER} -Xmx1024M -Dorg.slf4j.simpleLogger.defa
 
 if (WIN32 AND NOT MINGW)
   set (ENV{PATH} "$ENV{PATH}\\;${TEST_LIBRARY_DIRECTORY}")
+else ()
+  set (ENV{LD_LIBRARY_PATH} "$ENV{LD_LIBRARY_PATH}:${TEST_LIBRARY_DIRECTORY}")
 endif ()
 
 # run the test program, capture the stdout/stderr and the result var
@@ -64,6 +66,7 @@ execute_process (
     RESULT_VARIABLE TEST_RESULT
     OUTPUT_FILE ${TEST_OUTPUT}
     ERROR_FILE ${TEST_OUTPUT}.err
+    OUTPUT_VARIABLE TEST_OUT
     ERROR_VARIABLE TEST_ERROR
 )
 
@@ -126,11 +129,22 @@ if (NOT TEST_SKIP_COMPARE)
       file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
     endif ()
 
-    # now compare the output with the reference
-    execute_process (
-        COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
-        RESULT_VARIABLE TEST_RESULT
-    )
+    if (NOT TEST_SORT_COMPARE)
+      # now compare the output with the reference
+      execute_process (
+          COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
+          RESULT_VARIABLE TEST_RESULT
+      )
+    else ()
+      file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1)
+      file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2)
+      list (SORT v1)
+      list (SORT v2)
+      if (NOT v1 STREQUAL v2)
+        set(TEST_RESULT 1)
+      endif ()
+    endif ()
+
     if (TEST_RESULT)
       set (TEST_RESULT 0)
       file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
diff --git a/config/cmake/scripts/HDF5options.cmake b/config/cmake/scripts/HDF5options.cmake
index 45877d7..bfd7fad 100644
--- a/config/cmake/scripts/HDF5options.cmake
+++ b/config/cmake/scripts/HDF5options.cmake
@@ -69,12 +69,12 @@ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRIN
 
 #############################################################################################
 ### enable parallel builds
-
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
-
+if (DEFINED MPI)
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
+endif()
 #############################################################################################
 ### enable thread-safety builds
 
diff --git a/config/cmake/scripts/HPC/bsub-HDF5options.cmake b/config/cmake/scripts/HPC/bsub-HDF5options.cmake
index 83c17aa..7473e8a 100644
--- a/config/cmake/scripts/HPC/bsub-HDF5options.cmake
+++ b/config/cmake/scripts/HPC/bsub-HDF5options.cmake
@@ -13,19 +13,10 @@
 ####  Change default configuration of options in config/cmake/cacheinit.cmake file        ###
 ####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")                 ###
 #############################################################################################
-
-### uncomment/comment and change the following lines for other configuration options
-
-#############################################################################################
-### enable parallel builds
 if (DEFINED MPI)
-  # maximum parallel processor count for build and test       ####
-  set (MAX_PROC_COUNT 8)
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
-endif ()
+    # maximum parallel processor count for build and test       ####
+    set (MAX_PROC_COUNT 8)
+endif()
 #############################################################################################
 ### options to run test scripts in batch commands
 set (LOCAL_BATCH_SCRIPT_COMMAND "bsub")
diff --git a/config/cmake/scripts/HPC/qsub-HDF5options.cmake b/config/cmake/scripts/HPC/qsub-HDF5options.cmake
index 51c3891..34eba1b 100644
--- a/config/cmake/scripts/HPC/qsub-HDF5options.cmake
+++ b/config/cmake/scripts/HPC/qsub-HDF5options.cmake
@@ -13,19 +13,10 @@
 ####  Change default configuration of options in config/cmake/cacheinit.cmake file        ###
 ####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")                 ###
 #############################################################################################
-
-### uncomment/comment and change the following lines for other configuration options
-
-#############################################################################################
-### enable parallel builds
 if (DEFINED MPI)
-  # maximum parallel processor count for build and test       ####
-  set (MAX_PROC_COUNT 8)
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
-endif ()
+    # maximum parallel processor count for build and test       ####
+    set (MAX_PROC_COUNT 8)
+endif()
 #############################################################################################
 ### options to run test scripts in batch commands
 set (LOCAL_BATCH_SCRIPT_NAME "ctest.qsub")
diff --git a/config/cmake/scripts/HPC/raybsub-HDF5options.cmake b/config/cmake/scripts/HPC/raybsub-HDF5options.cmake
index 4aad887..fa1ec4a 100644
--- a/config/cmake/scripts/HPC/raybsub-HDF5options.cmake
+++ b/config/cmake/scripts/HPC/raybsub-HDF5options.cmake
@@ -13,19 +13,10 @@
 ####  Change default configuration of options in config/cmake/cacheinit.cmake file        ###
 ####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")                 ###
 #############################################################################################
-
-### uncomment/comment and change the following lines for other configuration options
-
-#############################################################################################
-### enable parallel builds
 if (DEFINED MPI)
-  # maximum parallel processor count for build and test       ####
-  set (MAX_PROC_COUNT 8)
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
-endif ()
+    # maximum parallel processor count for build and test       ####
+    set (MAX_PROC_COUNT 8)
+endif()
 #############################################################################################
 ### options to run test scripts in batch commands
 set (LOCAL_BATCH_SCRIPT_COMMAND "raybsub")
diff --git a/config/cmake/scripts/HPC/sbatch-HDF5options.cmake b/config/cmake/scripts/HPC/sbatch-HDF5options.cmake
index f70526e..3205a1c 100644
--- a/config/cmake/scripts/HPC/sbatch-HDF5options.cmake
+++ b/config/cmake/scripts/HPC/sbatch-HDF5options.cmake
@@ -13,19 +13,10 @@
 ####  Change default configuration of options in config/cmake/cacheinit.cmake file        ###
 ####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")                 ###
 #############################################################################################
-
-### uncomment/comment and change the following lines for other configuration options
-
-#############################################################################################
-### enable parallel builds
 if (DEFINED MPI)
-  # maximum parallel processor count for build and test       ####
-  set (MAX_PROC_COUNT 8)
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
-endif ()
+    # maximum parallel processor count for build and test       ####
+    set (MAX_PROC_COUNT 8)
+endif()
 #############################################################################################
 ### options to run test scripts in batch commands
 if (DEFINED KNL)