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authorAllen Byrne <byrn@hdfgroup.org>2019-01-18 22:30:36 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2019-01-18 22:30:36 (GMT)
commit769837f3ae93f4cae3486aef95c1c580a9946406 (patch)
tree2b846420eeb11754cc8175467349e171ca4cad5f /config
parentab2ab38fa64217e91345ff4b18a1d42f97afa04e (diff)
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Add parrallel runTest.cmake for ph5example
Diffstat (limited to 'config')
-rw-r--r--config/cmake_ext_mod/parrunTest.cmake325
1 files changed, 325 insertions, 0 deletions
diff --git a/config/cmake_ext_mod/parrunTest.cmake b/config/cmake_ext_mod/parrunTest.cmake
new file mode 100644
index 0000000..8449448
--- /dev/null
+++ b/config/cmake_ext_mod/parrunTest.cmake
@@ -0,0 +1,325 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+# parrunTest.cmake executes a command using MPI and captures the output in a file. File is then compared
+# against a reference file. Exit status of command can also be compared.
+cmake_policy(SET CMP0007 NEW)
+
+# arguments checking
+if (NOT TEST_PROGRAM)
+ message (FATAL_ERROR "Require TEST_PROGRAM to be defined")
+endif ()
+if (NOT TEST_FOLDER)
+ message ( FATAL_ERROR "Require TEST_FOLDER to be defined")
+endif ()
+if (NOT TEST_OUTPUT)
+ message (FATAL_ERROR "Require TEST_OUTPUT to be defined")
+endif ()
+if (NOT TEST_EXPECT)
+ message (STATUS "Require TEST_EXPECT to be defined")
+endif ()
+
+if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT})
+ file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT})
+endif ()
+
+if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+ file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+endif ()
+
+message (STATUS "COMMAND: ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} ${TEST_PROGRAM} ${MPIEXEC_POSTFLAGS} ${TEST_ARGS}")
+
+if (TEST_LIBRARY_DIRECTORY)
+ if (WIN32 AND NOT MINGW)
+ set (ENV{PATH} "$ENV{PATH};${TEST_LIBRARY_DIRECTORY}")
+ else ()
+ set (ENV{LD_LIBRARY_PATH} "$ENV{LD_LIBRARY_PATH}:${TEST_LIBRARY_DIRECTORY}")
+ endif ()
+endif ()
+
+if (TEST_ENV_VAR)
+ set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}")
+ #message (STATUS "ENV:${TEST_ENV_VAR}=$ENV{${TEST_ENV_VAR}}")
+endif ()
+
+if (NOT TEST_INPUT)
+ # run the test program, capture the stdout/stderr and the result var
+ execute_process (
+ COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} ${TEST_PROGRAM} ${MPIEXEC_POSTFLAGS} ${TEST_ARGS}
+ WORKING_DIRECTORY ${TEST_FOLDER}
+ RESULT_VARIABLE TEST_RESULT
+ OUTPUT_FILE ${TEST_OUTPUT}
+ ERROR_FILE ${TEST_OUTPUT}.err
+ OUTPUT_VARIABLE TEST_OUT
+ ERROR_VARIABLE TEST_ERROR
+ )
+else ()
+ # run the test program with stdin, capture the stdout/stderr and the result var
+ execute_process (
+ COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} ${TEST_PROGRAM} ${MPIEXEC_POSTFLAGS} ${TEST_ARGS}
+ WORKING_DIRECTORY ${TEST_FOLDER}
+ RESULT_VARIABLE TEST_RESULT
+ INPUT_FILE ${TEST_INPUT}
+ OUTPUT_FILE ${TEST_OUTPUT}
+ ERROR_FILE ${TEST_OUTPUT}.err
+ OUTPUT_VARIABLE TEST_OUT
+ ERROR_VARIABLE TEST_ERROR
+ )
+endif ()
+
+if (TEST_REGEX)
+ # TEST_REGEX should always be matched
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ string (REGEX MATCH "${TEST_REGEX}" REGEX_MATCH ${TEST_STREAM})
+ string (COMPARE EQUAL "${REGEX_MATCH}" "${TEST_MATCH}" REGEX_RESULT)
+ if (NOT REGEX_RESULT)
+ message (STATUS "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_MATCH}")
+ endif ()
+endif ()
+
+message (STATUS "COMMAND Result: ${TEST_RESULT}")
+
+# if the .err file exists and ERRROR_APPEND is enabled
+if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
+ if (TEST_MASK_FILE)
+ STRING(REGEX REPLACE "CurrentDir is [^\n]+\n" "CurrentDir is (dir name)\n" TEST_STREAM "${TEST_STREAM}")
+ endif ()
+ # remove special output
+ string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+
+ if (NOT ERROR_APPEND)
+ # write back to original .err file
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT}.err "${TEST_STREAM}")
+ else ()
+ # append error output to the stdout output file
+ file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+ endif ()
+endif ()
+
+# append the test result status with a predefined text
+if (TEST_APPEND)
+ file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_RESULT}\n")
+endif ()
+
+# if the return value is !=${TEST_EXPECT} bail out
+if (NOT TEST_RESULT EQUAL TEST_EXPECT)
+ if (NOT TEST_NOERRDISPLAY)
+ if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT})
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ message (STATUS "Output :\n${TEST_STREAM}")
+ endif ()
+ endif ()
+ message (FATAL_ERROR "Failed: Test program ${TEST_PROGRAM} exited != ${TEST_EXPECT}.\n${TEST_ERROR}")
+endif ()
+
+message (STATUS "COMMAND Error: ${TEST_ERROR}")
+
+# remove special output
+file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+string (FIND TEST_STREAM "_pmi_alps" "${TEST_FIND_RESULT}")
+if (TEST_FIND_RESULT GREATER 0)
+ string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_STREAM})
+endif ()
+
+# if the output file needs Storage text removed
+if (TEST_MASK)
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ string (REGEX REPLACE "Storage:[^\n]+\n" "Storage: <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+endif ()
+
+# if the output file needs Modified text removed
+if (TEST_MASK_MOD)
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ string (REGEX REPLACE "Modified:[^\n]+\n" "Modified: XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+endif ()
+
+# if the output file or the .err file needs to mask out error stack info
+if (TEST_MASK_ERROR)
+ if (NOT TEST_ERRREF)
+ # the error stack has been appended to the output file
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ else ()
+ # the error stack remains in the .err file
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
+ endif ()
+ string (REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}")
+ string (REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}")
+ string (REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}")
+ string (REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}")
+ string (REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}")
+ string (REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
+ string (REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
+ # write back the changes to the original files
+ if (NOT TEST_ERRREF)
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+ else ()
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT}.err "${TEST_STREAM}")
+ endif ()
+endif ()
+
+# remove text from the output file
+if (TEST_FILTER)
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ string (REGEX REPLACE "${TEST_FILTER}" "${TEST_FILTER_REPLACE}" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+endif ()
+
+if (TEST_REF_FILTER)
+ #message (STATUS "TEST_REF_FILTER: ${TEST_APPEND}${TEST_REF_FILTER}")
+ file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM)
+ STRING(REGEX REPLACE "${TEST_REF_APPEND}" "${TEST_REF_FILTER}" TEST_STREAM "${TEST_STREAM}")
+ file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
+endif ()
+
+# compare output files to references unless this must be skipped
+if (NOT TEST_SKIP_COMPARE)
+ if (EXISTS ${TEST_FOLDER}/${TEST_REFERENCE})
+ if (WIN32 AND NOT MINGW)
+ file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM)
+ file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
+ endif ()
+
+ if (NOT TEST_SORT_COMPARE)
+ # now compare the output with the reference
+ execute_process (
+ COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
+ RESULT_VARIABLE TEST_RESULT
+ )
+ else ()
+ file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1)
+ file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2)
+ list (SORT v1)
+ list (SORT v2)
+ if (NOT v1 STREQUAL v2)
+ set(TEST_RESULT 1)
+ endif ()
+ endif ()
+
+ if (TEST_RESULT)
+ set (TEST_RESULT 0)
+ file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
+ list (LENGTH test_act len_act)
+ file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref)
+ list (LENGTH test_ref len_ref)
+ if (len_act GREATER 0 AND len_ref GREATER 0)
+ math (EXPR _FP_LEN "${len_ref} - 1")
+ foreach (line RANGE 0 ${_FP_LEN})
+ list (GET test_act ${line} str_act)
+ list (GET test_ref ${line} str_ref)
+ if (NOT ${str_act} STREQUAL ${str_ref})
+ if (NOT str_act STREQUAL "")
+ set (TEST_RESULT 1)
+ message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+ endif ()
+ endif ()
+ endforeach ()
+ else ()
+ if (len_act EQUAL 0)
+ message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty")
+ endif ()
+ if (len_ref EQUAL 0)
+ message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty")
+ endif ()
+ endif ()
+ if (NOT len_act EQUAL len_ref)
+ set (TEST_RESULT 1)
+ endif ()
+ endif ()
+
+ message (STATUS "COMPARE Result: ${TEST_RESULT}")
+
+ # again, if return value is !=0 scream and shout
+ if (TEST_RESULT)
+ message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}")
+ endif ()
+ endif ()
+
+ # now compare the .err file with the error reference, if supplied
+ if (TEST_ERRREF)
+ if (WIN32 AND NOT MINGW)
+ file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM)
+ file (WRITE ${TEST_FOLDER}/${TEST_ERRREF} "${TEST_STREAM}")
+ endif ()
+
+ # now compare the error output with the error reference
+ execute_process (
+ COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT}.err ${TEST_FOLDER}/${TEST_ERRREF}
+ RESULT_VARIABLE TEST_RESULT
+ )
+ if (TEST_RESULT)
+ set (TEST_RESULT 0)
+ file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT}.err test_act)
+ list (LENGTH test_act len_act)
+ file (STRINGS ${TEST_FOLDER}/${TEST_ERRREF} test_ref)
+ list (LENGTH test_ref len_ref)
+ math (EXPR _FP_LEN "${len_ref} - 1")
+ if (len_act GREATER 0 AND len_ref GREATER 0)
+ math (EXPR _FP_LEN "${len_ref} - 1")
+ foreach (line RANGE 0 ${_FP_LEN})
+ list (GET test_act ${line} str_act)
+ list (GET test_ref ${line} str_ref)
+ if (NOT ${str_act} STREQUAL ${str_ref})
+ if (NOT ${str_act} STREQUAL "")
+ set (TEST_RESULT 1)
+ message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+ endif ()
+ endif ()
+ endforeach ()
+ else ()
+ if (len_act EQUAL 0)
+ message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT}.err is empty")
+ endif ()
+ if (len_ref EQUAL 0)
+ message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_ERRREF} is empty")
+ endif ()
+ endif ()
+ if (NOT len_act EQUAL len_ref)
+ set (TEST_RESULT 1)
+ endif ()
+ endif ()
+
+ message (STATUS "COMPARE Result: ${TEST_RESULT}")
+
+ # again, if return value is !=0 scream and shout
+ if (TEST_RESULT)
+ message (FATAL_ERROR "Failed: The error output of ${TEST_OUTPUT}.err did not match ${TEST_ERRREF}")
+ endif ()
+ endif ()
+endif ()
+
+if (TEST_GREP_COMPARE)
+ # now grep the output with the reference
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+
+ # TEST_REFERENCE should always be matched
+ string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM})
+ string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT)
+ if (NOT TEST_RESULT)
+ message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}")
+ endif ()
+
+ string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM})
+ if (TEST_EXPECT)
+ # TEST_EXPECT (1) interperts TEST_FILTER as NOT to match
+ string (LENGTH "${TEST_MATCH}" TEST_RESULT)
+ if (TEST_RESULT)
+ message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}")
+ endif ()
+ endif ()
+endif ()
+
+# everything went fine...
+message ("${TEST_PROGRAM} Passed")
+