[svn-r27953] Merge of CMake files from the trunk.

r27796, 27803, 27808, 27817, 27823, 27831, 27836, 27846, 27858-27874,
27894-27897, 27901, 27903-27933

Not tested. CMake still basically broken in this branch.

10 files changed, 203 insertions, 79 deletions

diff --git a/config/cmake/HDF5Macros.cmake b/config/cmake/HDF5Macros.cmake
index 976b910..bd86f34 100644
--- a/config/cmake/HDF5Macros.cmake
+++ b/config/cmake/HDF5Macros.cmake
@@ -39,5 +39,4 @@ macro (H5_SET_LIB_OPTIONS libtarget libname libtype)
       endif (${libtype} MATCHES "SHARED")
     endif (HDF5_BUILD_FRAMEWORKS)
   endif (APPLE)
-
 endmacro (H5_SET_LIB_OPTIONS)
diff --git a/config/cmake/HDF5_Examples.cmake.in b/config/cmake/HDF5_Examples.cmake.in
index d0c0509..65e2e9e 100644
--- a/config/cmake/HDF5_Examples.cmake.in
+++ b/config/cmake/HDF5_Examples.cmake.in
@@ -1,20 +1,48 @@
 cmake_minimum_required(VERSION 3.1.0 FATAL_ERROR)
 ###############################################################################################################
-# This script will build and run the examples from a compressed file
+# This script will build and run the examples from a folder
 # Execute from a command line:
-#     ctest -S HDF5_Examples.cmake,HDF5Examples -C Release -V -O test.log
+#     ctest -S HDF5_Examples.cmake,OPTION=VALUE -C Release -V -O test.log
 ###############################################################################################################
 
-set(INSTALLDIR "@CMAKE_INSTALL_PREFIX@")
 set(CTEST_CMAKE_GENERATOR "@CMAKE_GENERATOR@")
-set(STATICLIBRARIES "@H5_ENABLE_STATIC_LIB@")
-set(CTEST_SOURCE_NAME ${CTEST_SCRIPT_ARG})
 set(CTEST_DASHBOARD_ROOT ${CTEST_SCRIPT_DIRECTORY})
-set(CTEST_BUILD_CONFIGURATION "Release")
-#set(NO_MAC_FORTRAN "true")
 #set(BUILD_OPTIONS "${BUILD_OPTIONS} -DHDF_BUILD_FORTRAN:BOOL=ON")
-set(BUILD_OPTIONS "${BUILD_OPTIONS} -DHDF_ENABLE_F2003:BOOL=ON")
-#set(CTEST_USE_TAR_SOURCE "${CTEST_SCRIPT_ARG}")
+
+# handle input parameters to script.
+#INSTALLDIR - HDF5 root folder
+#CTEST_BUILD_CONFIGURATION - Release, Debug, RelWithDebInfo
+#CTEST_SOURCE_NAME - name of source folder; HDF4Examples
+#STATICLIBRARIES - Default is YES
+#NO_MAC_FORTRAN - set to TRUE to allow shared libs on a Mac)
+if(DEFINED CTEST_SCRIPT_ARG)
+    # transform ctest script arguments of the form
+    # script.ctest,var1=value1,var2=value2
+    # to variables with the respective names set to the respective values
+    string(REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}")
+    foreach(current_var ${script_args})
+        if ("${current_var}" MATCHES "^([^=]+)=(.+)$")
+            set("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}")
+        endif()
+    endforeach()
+endif()
+if(NOT DEFINED INSTALLDIR)
+    set(INSTALLDIR "@CMAKE_INSTALL_PREFIX@")
+endif()
+if(NOT DEFINED CTEST_BUILD_CONFIGURATION)
+    set(CTEST_BUILD_CONFIGURATION "Release")
+endif()
+if(NOT DEFINED CTEST_SOURCE_NAME)
+    set(CTEST_SOURCE_NAME "HDF5Examples")
+endif()
+if(NOT DEFINED STATICLIBRARIES)
+    set(STATICLIBRARIES "YES")
+endif()
+
+#TAR_SOURCE - name of tarfile
+#if(NOT DEFINED TAR_SOURCE)
+#  set(CTEST_USE_TAR_SOURCE "HDF5Examples-1.10.1-Source")
+#endif()
 
 ###############################################################################################################
 #     Adjust the following SET Commands as needed
@@ -42,7 +70,7 @@ endif(WIN32)
 # For any comments please contact cdashhelp@hdfgroup.org
 #
 ###############################################################################################################
- 
+
 #-----------------------------------------------------------------------------
 # MAC machines need special option
 #-----------------------------------------------------------------------------
@@ -53,14 +81,14 @@ if(APPLE)
   set(ENV{CC} "${XCODE_CC}")
   set(ENV{CXX} "${XCODE_CXX}")
   if(NOT NO_MAC_FORTRAN)
-    # Shared fortran is not supported, build static 
+    # Shared fortran is not supported, build static
     set(BUILD_OPTIONS "${BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_ANSI_CFLAGS:STRING=-fPIC")
   else(NOT NO_MAC_FORTRAN)
     set(BUILD_OPTIONS "${BUILD_OPTIONS} -DHDF_BUILD_FORTRAN:BOOL=OFF")
   endif(NOT NO_MAC_FORTRAN)
   set(BUILD_OPTIONS "${BUILD_OPTIONS} -DCTEST_USE_LAUNCHERS:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=OFF")
 endif(APPLE)
- 
+
 #-----------------------------------------------------------------------------
 set(CTEST_CMAKE_COMMAND "\"${CMAKE_COMMAND}\"")
 ## --------------------------
@@ -69,19 +97,19 @@ if(CTEST_USE_TAR_SOURCE)
   ## --------------------------
   if(WIN32)
     message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.zip]")
-    execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.zip RESULT_VARIABLE rv)
-  else(WIN32)
+    execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip RESULT_VARIABLE rv)
+  else()
     message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.tar]")
-    execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.tar RESULT_VARIABLE rv)
-  endif(WIN32)
- 
+    execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar RESULT_VARIABLE rv)
+  endif()
+
   if(NOT rv EQUAL 0)
     message(STATUS "extracting... [error-(${rv}) clean up]")
     file(REMOVE_RECURSE "${CTEST_SOURCE_DIRECTORY}")
     message(FATAL_ERROR "error: extract of ${CTEST_SOURCE_NAME} failed")
   endif(NOT rv EQUAL 0)
 endif(CTEST_USE_TAR_SOURCE)
- 
+
 #-----------------------------------------------------------------------------
 ## Clear the build directory
 ## --------------------------
@@ -104,11 +132,11 @@ endif()
 set (CTEST_CONFIGURE_COMMAND
     "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_BUILD_CONFIGURATION} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\""
 )
- 
+
 #-----------------------------------------------------------------------------
 ## -- set output to english
 set($ENV{LC_MESSAGES}  "en_EN")
- 
+
 #-----------------------------------------------------------------------------
 configure_file(${CTEST_SOURCE_DIRECTORY}/config/cmake/CTestCustom.cmake ${CTEST_BINARY_DIRECTORY}/CTestCustom.cmake)
 ctest_read_custom_files ("${CTEST_BINARY_DIRECTORY}")
@@ -122,5 +150,5 @@ if(res GREATER 0)
   message (FATAL_ERROR "tests FAILED")
 endif(res GREATER 0)
 #-----------------------------------------------------------------------------
-############################################################################################################## 
+##############################################################################################################
 message(STATUS "DONE")
\ No newline at end of file
diff --git a/config/cmake/HDF5_Process_Flex_Files.cmake b/config/cmake/HDF5_Process_Flex_Files.cmake
new file mode 100644
index 0000000..2306e93
--- /dev/null
+++ b/config/cmake/HDF5_Process_Flex_Files.cmake
@@ -0,0 +1,84 @@
+# post process flex/bison files
+
+message (STATUS "File: ${GEN_DIR} ${FILE_PARSE} ${FILE_ANALYZE}")
+
+if (FILE_PARSE)
+  # fix H5LTparse.c to declare H5LTyyparse return type as an hid_t
+  # instead of int.  Currently the generated function H5LTyyparse is
+  # generated with a return value of type int, which is a mapping to the
+  # flex yyparse function.  The return value in the HL library should be
+  # an hid_t.
+  # I propose to not use flex to generate this function, but for now I am
+  # adding a perl command to find and replace this function declaration in
+  # H5LTparse.c.
+    file (READ ${GEN_DIR}/${FILE_PARSE}.c TEST_STREAM)
+    string (REGEX REPLACE "int yyparse" "hid_t yyparse" TEST_STREAM "${TEST_STREAM}")
+    string (REGEX REPLACE "int\nyyparse" "hid_t\nyyparse" TEST_STREAM "${TEST_STREAM}")
+    string (REGEX REPLACE "int H5LTyyparse" "hid_t H5LTyyparse" TEST_STREAM "${TEST_STREAM}")
+    file (WRITE ${FILE_PARSE}.c "${TEST_STREAM}")
+    message (STATUS "replacing signature in H5LTparse.c")
+
+  # Add code that disables warnings in the flex/bison-generated code.
+  #
+  # Note that the GCC pragmas did not exist until gcc 4.2. Earlier versions
+  # will simply ignore them, but we want to avoid those warnings.
+    file (READ ${FILE_PARSE}.c TEST_STREAM)
+    file (WRITE ${FILE_PARSE}.c "
+#if __GNUC__ >= 4 && __GNUC_MINOR__ >=2\n
+#pragma GCC diagnostic ignored \"-Wconversion\"\n
+#pragma GCC diagnostic ignored \"-Wimplicit-function-declaration\"\n
+#pragma GCC diagnostic ignored \"-Wlarger-than=\"\n
+#pragma GCC diagnostic ignored \"-Wmissing-prototypes\"\n
+#pragma GCC diagnostic ignored \"-Wnested-externs\"\n
+#pragma GCC diagnostic ignored \"-Wold-style-definition\"\n
+#pragma GCC diagnostic ignored \"-Wsign-compare\"\n
+#pragma GCC diagnostic ignored \"-Wsign-conversion\"\n
+#pragma GCC diagnostic ignored \"-Wstrict-prototypes\"\n
+#pragma GCC diagnostic ignored \"-Wswitch-default\"\n
+#pragma GCC diagnostic ignored \"-Wunused-function\"\n
+#pragma GCC diagnostic ignored \"-Wunused-macros\"\n
+#pragma GCC diagnostic ignored \"-Wunused-parameter\"\n
+#pragma GCC diagnostic ignored \"-Wredundant-decls\"\n
+#elif defined __SUNPRO_CC\n
+#pragma disable_warn\n
+#elif defined _MSC_VER\n
+#pragma warning(push, 1)\n
+#endif\n
+    ")
+    file (APPEND ${FILE_PARSE}.c "${TEST_STREAM}")
+    message (STATUS "processed pragma in ${FILE_PARSE}")
+    file (READ ${GEN_DIR}/${FILE_PARSE}.h TEST_STREAM)
+    file (WRITE ${FILE_PARSE}.h "${TEST_STREAM}")
+endif (FILE_PARSE)
+
+if (FILE_ANALYZE)
+  # Add code that disables warnings in the flex/bison-generated code.
+  #
+  # Note that the GCC pragmas did not exist until gcc 4.2. Earlier versions
+  # will simply ignore them, but we want to avoid those warnings.
+    file (READ ${GEN_DIR}/${FILE_ANALYZE} TEST_STREAM)
+    file (WRITE ${FILE_ANALYZE} "
+#if __GNUC__ >= 4 && __GNUC_MINOR__ >=2\n
+#pragma GCC diagnostic ignored \"-Wconversion\"\n
+#pragma GCC diagnostic ignored \"-Wimplicit-function-declaration\"\n
+#pragma GCC diagnostic ignored \"-Wlarger-than=\"\n
+#pragma GCC diagnostic ignored \"-Wmissing-prototypes\"\n
+#pragma GCC diagnostic ignored \"-Wnested-externs\"\n
+#pragma GCC diagnostic ignored \"-Wold-style-definition\"\n
+#pragma GCC diagnostic ignored \"-Wsign-compare\"\n
+#pragma GCC diagnostic ignored \"-Wsign-conversion\"\n
+#pragma GCC diagnostic ignored \"-Wstrict-prototypes\"\n
+#pragma GCC diagnostic ignored \"-Wswitch-default\"\n
+#pragma GCC diagnostic ignored \"-Wunused-function\"\n
+#pragma GCC diagnostic ignored \"-Wunused-macros\"\n
+#pragma GCC diagnostic ignored \"-Wunused-parameter\"\n
+#pragma GCC diagnostic ignored \"-Wredundant-decls\"\n
+#elif defined __SUNPRO_CC\n
+#pragma disable_warn\n
+#elif defined _MSC_VER\n
+#pragma warning(push, 1)\n
+#endif\n
+    ")
+    file (APPEND ${FILE_ANALYZE} "${TEST_STREAM}")
+    message (STATUS "processed pragma in ${FILE_ANALYZE}")
+endif (FILE_ANALYZE)
diff --git a/config/cmake/README.txt.cmake.in b/config/cmake/README.txt.cmake.in
index a12c5aa..ec40abe 100644
--- a/config/cmake/README.txt.cmake.in
+++ b/config/cmake/README.txt.cmake.in
@@ -1,11 +1,11 @@
 @HDF5_PACKAGE_NAME@ version @HDF5_PACKAGE_VERSION_STRING@
 ------------------------------------------------------------------------------
 
-This directory contains the binary (release) distribution of 
+This directory contains the binary (release) distribution of
 @HDF5_PACKAGE_NAME@ @HDF5_PACKAGE_VERSION_MAJOR@ that was compiled on;
-    @BINARY_PLATFORM@. 
+    @BINARY_PLATFORM@.
 
-It was built with the following options: 
+It was built with the following options:
     -- @LIB_TYPE@ C/C++/Fortran libraries
     -- SZIP (encoder enabled) and ZLIB
     -- @LIB_TYPE@ HDF5 tools
@@ -24,27 +24,38 @@ Installation
 
 After Installation
 ===========================================================================
-The examples folder, HDF5Examples, located in the 
+The examples folder, HDF5Examples, located in the
 HDF5 install folder, can be built and tested with CMake and the supplied
 HDF5_Examples.cmake file. The HDF5_Examples.cmake expects HDF5 to have
-been installed in the default location with above compilers. Also, the CMake 
+been installed in the default location with above compilers. Also, the CMake
 utility should be installed.
 
 To test the installation with the examples;
     Create a directory to run the examples.
     Copy HDF5Examples folder to this directory.
     Copy HDF5_Examples.cmake to this directory.
-    Edit HDF5_Examples.cmake line 8 to set INSTALLDIR to where HDF5 is installed.
-       (The default should be correct unless you installed into a different folder.)
-    Execute from this directory: 
-        ctest -S HDF5_Examples.cmake,HDF5Examples -C Release -V -O test.log
+    The default source folder is defined as "HDF5Examples". It can be changed
+        with the CTEST_SOURCE_NAME script option.
+    The default installation folder is defined as "@CMAKE_INSTALL_PREFIX@".
+        It can be changed with the INSTALLDIR script option.
+    The default ctest configuration is defined as "Release". It can be changed
+        with the CTEST_BUILD_CONFIGURATION script option. Note that this must
+        be the same as the value used with the -C command line option.
+    The default build configuration is defined to build and use static libraries.
+        Shared libraries can be used with the STATICLIBRARIES script option set to "NO".
+    Other options can be changed by editing the HDF5_Examples.cmake file.
+
+    If the defaults are okay, execute from this directory:
+        ctest -S HDF5_Examples.cmake -C Release -V -O test.log
+    If the defaults need change, execute from this directory:
+        ctest -S HDF5_Examples.cmake,CTEST_SOURCE_NAME=MyExamples,INSTALLDIR=MyLocation -C Release -V -O test.log
 
 When executed, the ctest script will save the results to the log file, test.log, as
-indicated by the ctest command. If you wish the to see more build and test information, 
+indicated by the ctest command. If you wish the to see more build and test information,
 add "-VV" to the ctest command. The output should show;
       100% tests passed, 0 tests failed out of 156.
 
-For more information see USING_CMake_Examples.txt in the install folder. 
+For more information see USING_CMake_Examples.txt in the install folder.
 ===========================================================================
 
 Documentation for this release can be found at the following URL:
diff --git a/config/cmake/mccacheinit.cmake b/config/cmake/mccacheinit.cmake
index 39ec124..19ecc15 100644
--- a/config/cmake/mccacheinit.cmake
+++ b/config/cmake/mccacheinit.cmake
@@ -4,6 +4,8 @@
 # EXTERNAL cache entries
 ########################
 
+set (CMAKE_INSTALL_FRAMEWORK_PREFIX "Library/Frameworks" CACHE STRING "Frameworks installation directory" FORCE)
+
 set (BUILD_SHARED_LIBS OFF CACHE BOOL "Build Shared Libraries" FORCE)
 
 set (BUILD_TESTING ON CACHE BOOL "Build HDF5 Unit Testing" FORCE)
diff --git a/config/cmake/userblockTest.cmake b/config/cmake/userblockTest.cmake
index 2e0740b..0775cbe 100644
--- a/config/cmake/userblockTest.cmake
+++ b/config/cmake/userblockTest.cmake
@@ -1,4 +1,4 @@
-# runTest.cmake executes a command and captures the output in a file. File is then compared
+# userblockTest.cmake executes a command and captures the output in a file. File is then compared
 # against a reference file. Exit status of command can also be compared.
 
 # arguments checking
@@ -48,7 +48,7 @@ if (TEST_CHECKUB STREQUAL "YES")
         WORKING_DIRECTORY ${TEST_FOLDER}
         RESULT_VARIABLE TEST_RESULT
         OUTPUT_FILE ${TEST_HFILE}.len.txt
-        OUTPUT_VARIABLE TEST_ERROR
+        OUTPUT_VARIABLE TEST_OUT
         ERROR_VARIABLE TEST_ERROR
     )
     if (NOT ${TEST_RESULT} STREQUAL "0")
@@ -56,9 +56,9 @@ if (TEST_CHECKUB STREQUAL "YES")
     endif (NOT ${TEST_RESULT} STREQUAL "0")
     file (READ ${TEST_HFILE}.len.txt TEST_O_STRING_LEN)
   endif (TEST_OFILE)
-   
+
   MATH( EXPR TEST_STRING_SIZE "${TEST_U_STRING_LEN} + ${TEST_O_STRING_LEN}" )
- 
+
   if (NOT TEST_O_STRING_LEN STREQUAL "0")
     #$JAM_BIN/getub -c $s2 $origfile > $cmpfile
     EXECUTE_PROCESS (
@@ -66,13 +66,13 @@ if (TEST_CHECKUB STREQUAL "YES")
         WORKING_DIRECTORY ${TEST_FOLDER}
         RESULT_VARIABLE TEST_RESULT
         OUTPUT_FILE ${TEST_HFILE}-ub.cmp
-        OUTPUT_VARIABLE TEST_ERROR
+        OUTPUT_VARIABLE TEST_OUT
         ERROR_VARIABLE TEST_ERROR
         OUTPUT_STRIP_TRAILING_WHITESPACE
     )
     #cat $ufile >> $cmpfile
     file (STRINGS ${TEST_UFILE} TEST_STREAM NEWLINE_CONSUME)
-    file (APPEND ${TEST_HFILE}-ub.cmp "${TEST_STREAM}") 
+    file (APPEND ${TEST_HFILE}-ub.cmp "${TEST_STREAM}")
   else (NOT TEST_O_STRING_LEN STREQUAL "0")
     file (STRINGS ${TEST_UFILE} TEST_STREAM NEWLINE_CONSUME)
     file (WRITE ${TEST_HFILE}-ub.cmp ${TEST_STREAM})
@@ -84,7 +84,7 @@ if (TEST_CHECKUB STREQUAL "YES")
       WORKING_DIRECTORY ${TEST_FOLDER}
       RESULT_VARIABLE TEST_RESULT
       OUTPUT_FILE ${TEST_HFILE}.cmp
-      OUTPUT_VARIABLE TEST_ERROR
+      OUTPUT_VARIABLE TEST_OUT
       ERROR_VARIABLE TEST_ERROR
       OUTPUT_STRIP_TRAILING_WHITESPACE
   )
@@ -107,7 +107,7 @@ else (TEST_CHECKUB STREQUAL "YES")
         COMMAND ${TEST_PROGRAM} ${TEST_HFILE}
         WORKING_DIRECTORY ${TEST_FOLDER}
         RESULT_VARIABLE TEST_H_STRING_LEN
-        OUTPUT_VARIABLE TEST_ERROR
+        OUTPUT_VARIABLE TEST_OUT
         ERROR_VARIABLE TEST_ERROR
     )
   if (NOT TEST_H_STRING_LEN STREQUAL "0")
diff --git a/config/cmake/vfdTest.cmake b/config/cmake/vfdTest.cmake
index d3cb87e..4685d88 100644
--- a/config/cmake/vfdTest.cmake
+++ b/config/cmake/vfdTest.cmake
@@ -29,7 +29,7 @@ EXECUTE_PROCESS (
     WORKING_DIRECTORY ${TEST_FOLDER}
     OUTPUT_FILE ${TEST_OUTPUT}_${TEST_VFD}.out
     ERROR_FILE ${TEST_OUTPUT}_${TEST_VFD}.err
-    OUTPUT_VARIABLE TEST_ERROR
+    OUTPUT_VARIABLE TEST_OUT
     ERROR_VARIABLE TEST_ERROR
 )
 
@@ -37,7 +37,7 @@ message (STATUS "COMMAND Result: ${TEST_RESULT}")
 
 if (ERROR_APPEND)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.err TEST_STREAM)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.out "${TEST_STREAM}") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.out "${TEST_STREAM}")
 endif (ERROR_APPEND)
 
 # if the return value is !=${TEST_EXPECT} bail out
diff --git a/config/cmake_ext_mod/grepTest.cmake b/config/cmake_ext_mod/grepTest.cmake
index 5f07134..a090057 100644
--- a/config/cmake_ext_mod/grepTest.cmake
+++ b/config/cmake_ext_mod/grepTest.cmake
@@ -33,7 +33,7 @@ execute_process (
     RESULT_VARIABLE TEST_RESULT
     OUTPUT_FILE ${TEST_OUTPUT}
     ERROR_FILE ${TEST_OUTPUT}.err
-    OUTPUT_VARIABLE TEST_ERROR
+    OUTPUT_VARIABLE TEST_OUT
     ERROR_VARIABLE TEST_ERROR
 )
 
@@ -44,16 +44,16 @@ message (STATUS "COMMAND Error: ${TEST_ERROR}")
 file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
 
 # TEST_REFERENCE should always be matched
-string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM}) 
-string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT) 
+string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM})
+string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT)
 if (${TEST_RESULT} STREQUAL "0")
   message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}")
 endif (${TEST_RESULT} STREQUAL "0")
 
-string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM}) 
+string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM})
 if (${TEST_EXPECT} STREQUAL "1")
   # TEST_EXPECT (1) interperts TEST_FILTER as NOT to match
-  string (LENGTH "${TEST_MATCH}" TEST_RESULT) 
+  string (LENGTH "${TEST_MATCH}" TEST_RESULT)
   if (NOT ${TEST_RESULT} STREQUAL "0")
     message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}")
   endif (NOT ${TEST_RESULT} STREQUAL "0")
diff --git a/config/cmake_ext_mod/prunTest.cmake b/config/cmake_ext_mod/prunTest.cmake
index 3d5ec31..089c203 100644
--- a/config/cmake_ext_mod/prunTest.cmake
+++ b/config/cmake_ext_mod/prunTest.cmake
@@ -30,7 +30,7 @@ set (ERROR_APPEND 1)
 message (STATUS "COMMAND: ${TEST_PROGRAM} ${TEST_ARGS}")
 
 if (TEST_ENV_VAR)
-  set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}") 
+  set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}")
 endif (TEST_ENV_VAR)
 
 # run the test program, capture the stdout/stderr and the result var
@@ -40,7 +40,7 @@ EXECUTE_PROCESS (
     RESULT_VARIABLE TEST_RESULT
     OUTPUT_FILE ${TEST_OUTPUT}
     ERROR_FILE ${TEST_OUTPUT}.err
-    OUTPUT_VARIABLE TEST_ERROR
+    OUTPUT_VARIABLE TEST_OUT
     ERROR_VARIABLE TEST_ERROR
 )
 
@@ -51,49 +51,49 @@ file (WRITE ${TEST_FOLDER}/P_${TEST_REFERENCE} "${TEST_STREAM}")
 
 if (ERROR_APPEND)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (ERROR_APPEND)
 
 if (TEST_APPEND)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_ERROR}\n") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_ERROR}\n")
 endif (TEST_APPEND)
 
 message (STATUS "COMMAND Error: ${TEST_ERROR}")
 
 if (TEST_MASK)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "Storage:[^\n]+\n" "Storage:   <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "Storage:[^\n]+\n" "Storage:   <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK)
 
 if (TEST_MASK_MOD)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "Modified:[^\n]+\n" "Modified:  XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "Modified:[^\n]+\n" "Modified:  XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK_MOD)
 
 if (TEST_MASK_ERROR)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK_ERROR)
 
 if (TEST_FILTER)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "${TEST_FILTER}" "" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "${TEST_FILTER}" "" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_FILTER)
 
 #if (TEST_REF_FILTER)
 #  message (STATUS "TEST_REF_FILTER: ${TEST_APPEND}${TEST_REF_FILTER}")
 #  file (READ ${TEST_FOLDER}/P_${TEST_REFERENCE} TEST_STREAM)
-#  STRING(REGEX REPLACE "${TEST_APPEND}" "${TEST_REF_FILTER}" TEST_STREAM "${TEST_STREAM}") 
+#  STRING(REGEX REPLACE "${TEST_APPEND}" "${TEST_REF_FILTER}" TEST_STREAM "${TEST_STREAM}")
 #  file (WRITE ${TEST_FOLDER}/P_${TEST_REFERENCE} "${TEST_STREAM}")
 #endif (TEST_REF_FILTER)
 
diff --git a/config/cmake_ext_mod/runTest.cmake b/config/cmake_ext_mod/runTest.cmake
index bfaae2b..6506183 100644
--- a/config/cmake_ext_mod/runTest.cmake
+++ b/config/cmake_ext_mod/runTest.cmake
@@ -32,7 +32,7 @@ endif (NOT TEST_ERRREF)
 message (STATUS "COMMAND: ${TEST_PROGRAM} ${TEST_ARGS}")
 
 if (TEST_ENV_VAR)
-  set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}") 
+  set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}")
 endif (TEST_ENV_VAR)
 
 if (NOT TEST_INPUT)
@@ -43,7 +43,7 @@ if (NOT TEST_INPUT)
       RESULT_VARIABLE TEST_RESULT
       OUTPUT_FILE ${TEST_OUTPUT}
       ERROR_FILE ${TEST_OUTPUT}.err
-      OUTPUT_VARIABLE TEST_ERROR
+      OUTPUT_VARIABLE TEST_OUT
       ERROR_VARIABLE TEST_ERROR
   )
 else (NOT TEST_INPUT)
@@ -55,7 +55,7 @@ else (NOT TEST_INPUT)
       INPUT_FILE ${TEST_INPUT}
       OUTPUT_FILE ${TEST_OUTPUT}
       ERROR_FILE ${TEST_OUTPUT}.err
-      OUTPUT_VARIABLE TEST_ERROR
+      OUTPUT_VARIABLE TEST_OUT
       ERROR_VARIABLE TEST_ERROR
   )
 endif (NOT TEST_INPUT)
@@ -64,11 +64,11 @@ message (STATUS "COMMAND Result: ${TEST_RESULT}")
 
 if (ERROR_APPEND)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (ERROR_APPEND)
 
 if (TEST_APPEND)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_RESULT}\n") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_RESULT}\n")
 endif (TEST_APPEND)
 
 # if the return value is !=${TEST_EXPECT} bail out
@@ -80,13 +80,13 @@ message (STATUS "COMMAND Error: ${TEST_ERROR}")
 
 if (TEST_MASK)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "Storage:[^\n]+\n" "Storage:   <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "Storage:[^\n]+\n" "Storage:   <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK)
 
 if (TEST_MASK_MOD)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "Modified:[^\n]+\n" "Modified:  XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "Modified:[^\n]+\n" "Modified:  XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK_MOD)
 
@@ -96,13 +96,13 @@ if (TEST_MASK_ERROR)
   else (NOT TEST_ERRREF)
     file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
   endif (NOT TEST_ERRREF)
-  STRING(REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
   if (NOT TEST_ERRREF)
     file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
   else (NOT TEST_ERRREF)
@@ -112,7 +112,7 @@ endif (TEST_MASK_ERROR)
 
 if (TEST_FILTER)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "${TEST_FILTER}" "" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "${TEST_FILTER}" "" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_FILTER)
 
@@ -157,7 +157,7 @@ if (NOT TEST_SKIP_COMPARE)
   if (NOT ${TEST_RESULT} STREQUAL 0)
     message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}")
   endif (NOT ${TEST_RESULT} STREQUAL 0)
-  
+
   if (TEST_ERRREF)
     if (WIN32 AND NOT MINGW)
       file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM)