[svn-r28002] merge from trunk.inactive/avoid_truncate

8 files changed, 182 insertions, 114 deletions

diff --git a/config/cmake/scripts/CTestScript.cmake b/config/cmake/scripts/CTestScript.cmake
index 0cd686a..9d0953e 100755
--- a/config/cmake/scripts/CTestScript.cmake
+++ b/config/cmake/scripts/CTestScript.cmake
@@ -4,9 +4,9 @@ cmake_minimum_required(VERSION 3.1.0 FATAL_ERROR)
 # For any comments please contact cdashhelp@hdfgroup.org

 #

 ########################################################

-# ----------------------------------------------------------- 

+# -----------------------------------------------------------

 # -- Get environment

-# ----------------------------------------------------------- 

+# -----------------------------------------------------------

 if(NOT SITE_OS_NAME)

   ## machine name not provided - attempt to discover with uname

   ## -- set hostname

@@ -18,7 +18,7 @@ if(NOT SITE_OS_NAME)
   macro(getuname name flag)

     exec_program("${UNAME}" ARGS "${flag}" OUTPUT_VARIABLE "${name}")

   endmacro(getuname)

- 

+

   getuname(osname -s)

   getuname(osrel  -r)

   getuname(cpu    -m)

@@ -45,7 +45,7 @@ else(NOT SITE_OS_NAME)
   endif()

   set(BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}")

 endif(NOT SITE_OS_NAME)

- 

+

 #-----------------------------------------------------------------------------

 # MAC machines need special option

 #-----------------------------------------------------------------------------

@@ -72,14 +72,15 @@ if(CTEST_USE_TAR_SOURCE)
     message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.tar]")

     execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar RESULT_VARIABLE rv)

   endif()

- 

+

   if(NOT rv EQUAL 0)

     message(STATUS "extracting... [error-(${rv}) clean up]")

     file(REMOVE_RECURSE "${CTEST_SOURCE_DIRECTORY}")

     message(FATAL_ERROR "error: extract of ${CTEST_USE_TAR_SOURCE} failed")

   endif()

-     

+

   file(RENAME ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE} ${CTEST_SOURCE_DIRECTORY})

+  set(LOCAL_SKIP_UPDATE "TRUE")

 else(CTEST_USE_TAR_SOURCE)

   if(LOCAL_UPDATE)

     if(CTEST_USE_GIT_SOURCE)

@@ -120,7 +121,7 @@ else(CTEST_USE_TAR_SOURCE)
       if(NOT EXISTS "${CTEST_SOURCE_DIRECTORY}")

         set(NEED_REPOSITORY_CHECKOUT 1)

       endif()

- 

+

       if(NOT CTEST_REPO_VERSION)

         set(CTEST_REPO_VERSION "HEAD")

       endif()

@@ -135,7 +136,7 @@ else(CTEST_USE_TAR_SOURCE)
     endif(CTEST_USE_GIT_SOURCE)

   endif(LOCAL_UPDATE)

 endif(CTEST_USE_TAR_SOURCE)

- 

+

 #-----------------------------------------------------------------------------

 ## Clear the build directory

 ## --------------------------

@@ -155,7 +156,7 @@ if(NOT N EQUAL 0)
   endif()

   set(ctest_test_args ${ctest_test_args} PARALLEL_LEVEL ${N})

 endif()

- 

+

 #-----------------------------------------------------------------------------

 # Send the main script as a note.

 list(APPEND CTEST_NOTES_FILES

@@ -163,7 +164,7 @@ list(APPEND CTEST_NOTES_FILES
     "${CMAKE_CURRENT_LIST_FILE}"

     "${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake"

 )

- 

+

 #-----------------------------------------------------------------------------

 # Check for required variables.

 # --------------------------

@@ -176,7 +177,7 @@ foreach(req
     message(FATAL_ERROR "The containing script must set ${req}")

   endif()

 endforeach(req)

- 

+

 #-----------------------------------------------------------------------------

 # Initialize the CTEST commands

 #------------------------------

@@ -193,11 +194,11 @@ else()
       "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_BUILD_CONFIGURATION} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\""

   )

 endif()

- 

+

 #-----------------------------------------------------------------------------

 ## -- set output to english

 set($ENV{LC_MESSAGES}  "en_EN")

- 

+

 # Print summary information.

 foreach(v

     CTEST_SITE

@@ -215,7 +216,7 @@ foreach(v
   set(vars "${vars}  ${v}=[${${v}}]\n")

 endforeach(v)

 message(STATUS "Dashboard script configuration:\n${vars}\n")

- 

+

 #-----------------------------------------------------------------------------

 #-----------------------------------------------------------------------------

   ## NORMAL process

@@ -235,12 +236,12 @@ message(STATUS "Dashboard script configuration:\n${vars}\n")
   if(LOCAL_SUBMIT)

     ctest_submit (PARTS Update Configure Notes)

   endif()

-  

+

   ctest_build (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)

   if(LOCAL_SUBMIT)

     ctest_submit (PARTS Build)

   endif()

-  

+

   if(NOT LOCAL_SKIP_TEST)

     if(NOT LOCAL_MEMCHECK_TEST)

       ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res)

@@ -263,7 +264,7 @@ message(STATUS "Dashboard script configuration:\n${vars}\n")
       endif()

     endif()

   endif(NOT LOCAL_SKIP_TEST)

-  

+

   if(NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE)

     ##-----------------------------------------------

     ## Package the product

diff --git a/config/cmake/scripts/HDF518config.cmake b/config/cmake/scripts/HDF518config.cmake
index aee5389..897bcbe 100755
--- a/config/cmake/scripts/HDF518config.cmake
+++ b/config/cmake/scripts/HDF518config.cmake
@@ -1,16 +1,89 @@
-##########################################################################

-### For Windows ${CTEST_SCRIPT_ARG} is one of                          ###

-###    [64-VS2013, 32-VS2013, 64-VS2012, 32-VS2012]                    ###

-### ctest -S HDF518config.cmake,32-VS2012 -C Release -VV -O hdf518.log ###

-###                                                                    ###

-### Other platforms do not use ${CTEST_SCRIPT_ARG}                     ###

-### ctest -S HDF518config.cmake -C Release -VV -O hdf518.log           ###

-##########################################################################

+##########################################################################################

+### ${CTEST_SCRIPT_ARG} is of the form OPTION=VALUE                                    ###

+### BUILD_GENERATOR required [Unix, VS2013, VS201364, VS2012, VS201264]                ###

+### ctest -S HDF518config.cmake,BUILD_GENERATOR=VS201264 -C Release -V -O hdf518.log   ###

+##########################################################################################

 

 cmake_minimum_required(VERSION 3.1.0 FATAL_ERROR)

-set(CTEST_SOURCE_VERSION 1.8.15)

-set(CTEST_SOURCE_VERSEXT "")

-set(CTEST_SOURCE_NAME hdf5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT})

+############################################################################

+# Usage:

+#     ctest -S HDF518config.cmake,OPTION=VALUE -C Release -VV -O test.log

+# where valid options for OPTION are:

+#     BUILD_GENERATOR - The cmake build generator:

+#            Unix    * Unix Makefiles

+#            VS2013    * Visual Studio 12 2013

+#            VS201364 * Visual Studio 12 2013 Win64

+#            VS2012    * Visual Studio 11 2012

+#            VS201264 * Visual Studio 11 2012 Win64

+#

+#     INSTALLDIR  -  root folder where hdf5 is installed

+#     CTEST_BUILD_CONFIGURATION  - Release, Debug, etc

+#     CTEST_SOURCE_NAME  -  source folder

+#     STATICLIBRARIES  -  Build/use static libraries

+#     NO_MAC_FORTRAN  - Yes to be SHARED on a Mac

+##############################################################################

+

+set(CTEST_SOURCE_VERSION 1.9)

+

+##############################################################################

+# handle input parameters to script.

+#BUILD_GENERATOR - which CMake generator to use, required

+#INSTALLDIR - HDF5-1.9 root folder

+#CTEST_BUILD_CONFIGURATION - Release, Debug, RelWithDebInfo

+#CTEST_SOURCE_NAME - name of source folder; HDF5-1.9

+#STATICLIBRARIES - Default is YES

+#NO_MAC_FORTRAN - set to TRUE to allow shared libs on a Mac

+if(DEFINED CTEST_SCRIPT_ARG)

+    # transform ctest script arguments of the form

+    # script.ctest,var1=value1,var2=value2

+    # to variables with the respective names set to the respective values

+    string(REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}")

+    foreach(current_var ${script_args})

+        if ("${current_var}" MATCHES "^([^=]+)=(.+)$")

+            set("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}")

+        endif()

+    endforeach()

+endif()

+

+# build generator must be defined

+if(NOT DEFINED BUILD_GENERATOR)

+  message(FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2013, VS201364, VS2012, or VS201264")

+else()

+  if(${BUILD_GENERATOR} STREQUAL "Unix")

+    set(CMAKE_GENERATOR "Unix Makefiles")

+  elseif(${BUILD_GENERATOR} STREQUAL "VS2013")

+    set(CMAKE_GENERATOR "Visual Studio 12 2013")

+  elseif(${BUILD_GENERATOR} STREQUAL "VS201364")

+    set(CMAKE_GENERATOR "Visual Studio 12 2013 Win64")

+  elseif(${BUILD_GENERATOR} STREQUAL "VS2012")

+    set(CMAKE_GENERATOR "Visual Studio 11 2012")

+  elseif(${BUILD_GENERATOR} STREQUAL "VS201264")

+    set(CMAKE_GENERATOR "Visual Studio 11 2012 Win64")

+  else()

+    message(FATAL_ERROR "Invalid BUILD_GENERATOR must be - Unix, VS2013, VS201364, VS2012, or VS201264")

+  endif()

+endif()

+

+if(NOT DEFINED INSTALLDIR)

+  if(WIN32)

+    set(INSTALLDIR "/usr/local/myhdf5")

+  else()

+    set(INSTALLDIR "C:\\Program\ Files\\myhdf5")

+  endif()

+endif()

+if(NOT DEFINED CTEST_BUILD_CONFIGURATION)

+    set(CTEST_BUILD_CONFIGURATION "Release")

+endif()

+if(NOT DEFINED CTEST_SOURCE_NAME)

+    set(CTEST_SOURCE_NAME "hdf5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}")

+endif()

+if(NOT DEFINED STATICLIBRARIES)

+    set(STATICLIBRARIES "YES")

+endif()

+if(NOT DEFINED FORTRANLIBRARIES)

+    set(FORTRANLIBRARIES "NO")

+endif()

+

 set(CTEST_BINARY_NAME "build")

 set(CTEST_DASHBOARD_ROOT "${CTEST_SCRIPT_DIRECTORY}")

 if(WIN32)

@@ -22,40 +95,30 @@ else()
 endif()

 

 ###################################################################

-### Following Line is one of [Release, RelWithDebInfo, Debug] #####

-set(CTEST_BUILD_CONFIGURATION "Release")

-###################################################################

-

-###################################################################

 #########       Following describes compiler           ############

 if(WIN32)

   set(SITE_OS_NAME "Windows")

   set(SITE_OS_VERSION "WIN7")

-  if(${CTEST_SCRIPT_ARG} STREQUAL "64-VS2013")

-    set(CTEST_CMAKE_GENERATOR "Visual Studio 12 2013 Win64")

+  if(${BUILD_GENERATOR} STREQUAL "VS201364")

     set(SITE_OS_BITS "64")

     set(SITE_COMPILER_NAME "vs2013")

     set(SITE_COMPILER_VERSION "12")

-  elseif(${CTEST_SCRIPT_ARG} STREQUAL "32-VS2013")

-    set(CTEST_CMAKE_GENERATOR "Visual Studio 12 2013")

+  elseif(${BUILD_GENERATOR} STREQUAL "VS2013")

     set(SITE_OS_BITS "32")

     set(SITE_COMPILER_NAME "vs2013")

     set(SITE_COMPILER_VERSION "12")

-  elseif(${CTEST_SCRIPT_ARG} STREQUAL "64-VS2012")

-    set(CTEST_CMAKE_GENERATOR "Visual Studio 11 2012 Win64")

+  elseif(${BUILD_GENERATOR} STREQUAL "VS201264")

     set(SITE_OS_BITS "64")

     set(SITE_COMPILER_NAME "vs2012")

     set(SITE_COMPILER_VERSION "11")

-  elseif(${CTEST_SCRIPT_ARG} STREQUAL "32-VS2012")

-    set(CTEST_CMAKE_GENERATOR "Visual Studio 11 2012")

+  elseif(${BUILD_GENERATOR} STREQUAL "VS2012")

     set(SITE_OS_BITS "32")

     set(SITE_COMPILER_NAME "vs2012")

     set(SITE_COMPILER_VERSION "11")

   endif()

 ##  Set the following to unique id your computer  ##

-  set(CTEST_SITE "WIN7${CTEST_SCRIPT_ARG}.XXXX")

+  set(CTEST_SITE "WIN7${BUILD_GENERATOR}.XXXX")

 else()

-  set(CTEST_CMAKE_GENERATOR "Unix Makefiles")

 ##  Set the following to unique id your computer  ##

   if(APPLE)

     set(CTEST_SITE "MAC.XXXX")

@@ -69,9 +132,6 @@ endif()
 #########       Following is for submission to CDash   ############

 ###################################################################

 set(MODEL "Experimental")

-#########       Following describes computer           ############

-## following is optional to describe build ##

-set(SITE_BUILDNAME_SUFFIX "STATIC")

 ###################################################################

 

 ###################################################################

@@ -85,19 +145,25 @@ set(SITE_BUILDNAME_SUFFIX "STATIC")
 #set(LOCAL_NO_PACKAGE "TRUE")

 #####       Following controls source update                  #####

 #set(LOCAL_UPDATE "TRUE")

-set(REPOSITORY_URL "http://svn.hdfgroup.uiuc.edu/hdf5/branches/hdf5_1_8")

+set(REPOSITORY_URL "http://svn.hdfgroup.uiuc.edu/hdf5/trunk")

 #uncomment to use a compressed source file: *.tar on linux or mac *.zip on windows

-#set(CTEST_USE_TAR_SOURCE "${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}")

+#set(CTEST_USE_TAR_SOURCE "${CTEST_SOURCE_VERSION}")

 ###################################################################

 

 ###################################################################

 ####  Change default configuration of options in config/cmake/cacheinit.cmake file ###

 ####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")

 

-### uncomment/comment or change the following lines for configuration options

+###################################################################

+if(STATICLIBRARIES)

+  set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")

+  #########       Following describes computer           ############

+  ## following is optional to describe build                       ##

+  set(SITE_BUILDNAME_SUFFIX "STATIC")

+endif(STATICLIBRARIES)

+###################################################################

 

-### comment the following line or change OFF to ON in order to build shared libraries

-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")

+### uncomment/comment and change the following lines for other configuration options

 

 ####      ext libraries       ####

 ### ext libs from tgz

@@ -112,10 +178,11 @@ set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING
 #set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")

 #set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")

 ####      fortran       ####

-### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN

-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=ON")

-### disable Fortran; change OFF to ON in order to build FORTRAN libraries

-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")

+if(FORTRANLIBRARIES)

+  set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF_BUILD_FORTRAN:BOOL=ON")

+  ### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN

+  set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=ON")

+endif(FORTRANLIBRARIES)

 

 ### disable test program builds

 #set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")

@@ -126,7 +193,7 @@ set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
 set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")

 

 ### change install prefix

-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=install")

+set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTALLDIR}")

 

 ###################################################################

 

diff --git a/config/cmake/userblockTest.cmake b/config/cmake/userblockTest.cmake
index fab470c..0775cbe 100644
--- a/config/cmake/userblockTest.cmake
+++ b/config/cmake/userblockTest.cmake
@@ -48,7 +48,7 @@ if (TEST_CHECKUB STREQUAL "YES")
         WORKING_DIRECTORY ${TEST_FOLDER}
         RESULT_VARIABLE TEST_RESULT
         OUTPUT_FILE ${TEST_HFILE}.len.txt
-        OUTPUT_VARIABLE TEST_ERROR
+        OUTPUT_VARIABLE TEST_OUT
         ERROR_VARIABLE TEST_ERROR
     )
     if (NOT ${TEST_RESULT} STREQUAL "0")
@@ -66,7 +66,7 @@ if (TEST_CHECKUB STREQUAL "YES")
         WORKING_DIRECTORY ${TEST_FOLDER}
         RESULT_VARIABLE TEST_RESULT
         OUTPUT_FILE ${TEST_HFILE}-ub.cmp
-        OUTPUT_VARIABLE TEST_ERROR
+        OUTPUT_VARIABLE TEST_OUT
         ERROR_VARIABLE TEST_ERROR
         OUTPUT_STRIP_TRAILING_WHITESPACE
     )
@@ -84,7 +84,7 @@ if (TEST_CHECKUB STREQUAL "YES")
       WORKING_DIRECTORY ${TEST_FOLDER}
       RESULT_VARIABLE TEST_RESULT
       OUTPUT_FILE ${TEST_HFILE}.cmp
-      OUTPUT_VARIABLE TEST_ERROR
+      OUTPUT_VARIABLE TEST_OUT
       ERROR_VARIABLE TEST_ERROR
       OUTPUT_STRIP_TRAILING_WHITESPACE
   )
@@ -107,7 +107,7 @@ else (TEST_CHECKUB STREQUAL "YES")
         COMMAND ${TEST_PROGRAM} ${TEST_HFILE}
         WORKING_DIRECTORY ${TEST_FOLDER}
         RESULT_VARIABLE TEST_H_STRING_LEN
-        OUTPUT_VARIABLE TEST_ERROR
+        OUTPUT_VARIABLE TEST_OUT
         ERROR_VARIABLE TEST_ERROR
     )
   if (NOT TEST_H_STRING_LEN STREQUAL "0")
diff --git a/config/cmake/vfdTest.cmake b/config/cmake/vfdTest.cmake
index d3cb87e..4685d88 100644
--- a/config/cmake/vfdTest.cmake
+++ b/config/cmake/vfdTest.cmake
@@ -29,7 +29,7 @@ EXECUTE_PROCESS (
     WORKING_DIRECTORY ${TEST_FOLDER}
     OUTPUT_FILE ${TEST_OUTPUT}_${TEST_VFD}.out
     ERROR_FILE ${TEST_OUTPUT}_${TEST_VFD}.err
-    OUTPUT_VARIABLE TEST_ERROR
+    OUTPUT_VARIABLE TEST_OUT
     ERROR_VARIABLE TEST_ERROR
 )
 
@@ -37,7 +37,7 @@ message (STATUS "COMMAND Result: ${TEST_RESULT}")
 
 if (ERROR_APPEND)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.err TEST_STREAM)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.out "${TEST_STREAM}") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.out "${TEST_STREAM}")
 endif (ERROR_APPEND)
 
 # if the return value is !=${TEST_EXPECT} bail out
diff --git a/config/cmake_ext_mod/grepTest.cmake b/config/cmake_ext_mod/grepTest.cmake
index 5f07134..a090057 100644
--- a/config/cmake_ext_mod/grepTest.cmake
+++ b/config/cmake_ext_mod/grepTest.cmake
@@ -33,7 +33,7 @@ execute_process (
     RESULT_VARIABLE TEST_RESULT
     OUTPUT_FILE ${TEST_OUTPUT}
     ERROR_FILE ${TEST_OUTPUT}.err
-    OUTPUT_VARIABLE TEST_ERROR
+    OUTPUT_VARIABLE TEST_OUT
     ERROR_VARIABLE TEST_ERROR
 )
 
@@ -44,16 +44,16 @@ message (STATUS "COMMAND Error: ${TEST_ERROR}")
 file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
 
 # TEST_REFERENCE should always be matched
-string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM}) 
-string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT) 
+string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM})
+string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT)
 if (${TEST_RESULT} STREQUAL "0")
   message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}")
 endif (${TEST_RESULT} STREQUAL "0")
 
-string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM}) 
+string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM})
 if (${TEST_EXPECT} STREQUAL "1")
   # TEST_EXPECT (1) interperts TEST_FILTER as NOT to match
-  string (LENGTH "${TEST_MATCH}" TEST_RESULT) 
+  string (LENGTH "${TEST_MATCH}" TEST_RESULT)
   if (NOT ${TEST_RESULT} STREQUAL "0")
     message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}")
   endif (NOT ${TEST_RESULT} STREQUAL "0")
diff --git a/config/cmake_ext_mod/prunTest.cmake b/config/cmake_ext_mod/prunTest.cmake
index 3d5ec31..089c203 100644
--- a/config/cmake_ext_mod/prunTest.cmake
+++ b/config/cmake_ext_mod/prunTest.cmake
@@ -30,7 +30,7 @@ set (ERROR_APPEND 1)
 message (STATUS "COMMAND: ${TEST_PROGRAM} ${TEST_ARGS}")
 
 if (TEST_ENV_VAR)
-  set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}") 
+  set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}")
 endif (TEST_ENV_VAR)
 
 # run the test program, capture the stdout/stderr and the result var
@@ -40,7 +40,7 @@ EXECUTE_PROCESS (
     RESULT_VARIABLE TEST_RESULT
     OUTPUT_FILE ${TEST_OUTPUT}
     ERROR_FILE ${TEST_OUTPUT}.err
-    OUTPUT_VARIABLE TEST_ERROR
+    OUTPUT_VARIABLE TEST_OUT
     ERROR_VARIABLE TEST_ERROR
 )
 
@@ -51,49 +51,49 @@ file (WRITE ${TEST_FOLDER}/P_${TEST_REFERENCE} "${TEST_STREAM}")
 
 if (ERROR_APPEND)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (ERROR_APPEND)
 
 if (TEST_APPEND)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_ERROR}\n") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_ERROR}\n")
 endif (TEST_APPEND)
 
 message (STATUS "COMMAND Error: ${TEST_ERROR}")
 
 if (TEST_MASK)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "Storage:[^\n]+\n" "Storage:   <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "Storage:[^\n]+\n" "Storage:   <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK)
 
 if (TEST_MASK_MOD)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "Modified:[^\n]+\n" "Modified:  XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "Modified:[^\n]+\n" "Modified:  XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK_MOD)
 
 if (TEST_MASK_ERROR)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
+  STRING(REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK_ERROR)
 
 if (TEST_FILTER)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "${TEST_FILTER}" "" TEST_STREAM "${TEST_STREAM}") 
+  STRING(REGEX REPLACE "${TEST_FILTER}" "" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_FILTER)
 
 #if (TEST_REF_FILTER)
 #  message (STATUS "TEST_REF_FILTER: ${TEST_APPEND}${TEST_REF_FILTER}")
 #  file (READ ${TEST_FOLDER}/P_${TEST_REFERENCE} TEST_STREAM)
-#  STRING(REGEX REPLACE "${TEST_APPEND}" "${TEST_REF_FILTER}" TEST_STREAM "${TEST_STREAM}") 
+#  STRING(REGEX REPLACE "${TEST_APPEND}" "${TEST_REF_FILTER}" TEST_STREAM "${TEST_STREAM}")
 #  file (WRITE ${TEST_FOLDER}/P_${TEST_REFERENCE} "${TEST_STREAM}")
 #endif (TEST_REF_FILTER)
 
diff --git a/config/cmake_ext_mod/runTest.cmake b/config/cmake_ext_mod/runTest.cmake
index bfaae2b..c2b7527 100644
--- a/config/cmake_ext_mod/runTest.cmake
+++ b/config/cmake_ext_mod/runTest.cmake
@@ -32,30 +32,30 @@ endif (NOT TEST_ERRREF)
 message (STATUS "COMMAND: ${TEST_PROGRAM} ${TEST_ARGS}")
 
 if (TEST_ENV_VAR)
-  set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}") 
+  set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}")
 endif (TEST_ENV_VAR)
 
 if (NOT TEST_INPUT)
   # run the test program, capture the stdout/stderr and the result var
-  EXECUTE_PROCESS (
+  execute_process (
       COMMAND ${TEST_PROGRAM} ${TEST_ARGS}
       WORKING_DIRECTORY ${TEST_FOLDER}
       RESULT_VARIABLE TEST_RESULT
       OUTPUT_FILE ${TEST_OUTPUT}
       ERROR_FILE ${TEST_OUTPUT}.err
-      OUTPUT_VARIABLE TEST_ERROR
+      OUTPUT_VARIABLE TEST_OUT
       ERROR_VARIABLE TEST_ERROR
   )
 else (NOT TEST_INPUT)
   # run the test program with stdin, capture the stdout/stderr and the result var
-  EXECUTE_PROCESS (
+  execute_process (
       COMMAND ${TEST_PROGRAM} ${TEST_ARGS}
       WORKING_DIRECTORY ${TEST_FOLDER}
       RESULT_VARIABLE TEST_RESULT
       INPUT_FILE ${TEST_INPUT}
       OUTPUT_FILE ${TEST_OUTPUT}
       ERROR_FILE ${TEST_OUTPUT}.err
-      OUTPUT_VARIABLE TEST_ERROR
+      OUTPUT_VARIABLE TEST_OUT
       ERROR_VARIABLE TEST_ERROR
   )
 endif (NOT TEST_INPUT)
@@ -64,11 +64,11 @@ message (STATUS "COMMAND Result: ${TEST_RESULT}")
 
 if (ERROR_APPEND)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (ERROR_APPEND)
 
 if (TEST_APPEND)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_RESULT}\n") 
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_APPEND} ${TEST_RESULT}\n")
 endif (TEST_APPEND)
 
 # if the return value is !=${TEST_EXPECT} bail out
@@ -80,13 +80,13 @@ message (STATUS "COMMAND Error: ${TEST_ERROR}")
 
 if (TEST_MASK)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "Storage:[^\n]+\n" "Storage:   <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}") 
+   string (REGEX REPLACE "Storage:[^\n]+\n" "Storage:   <details removed for portability>\n" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK)
 
 if (TEST_MASK_MOD)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "Modified:[^\n]+\n" "Modified:  XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}") 
+   string (REGEX REPLACE "Modified:[^\n]+\n" "Modified:  XXXX-XX-XX XX:XX:XX XXX\n" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_MASK_MOD)
 
@@ -96,13 +96,13 @@ if (TEST_MASK_ERROR)
   else (NOT TEST_ERRREF)
     file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
   endif (NOT TEST_ERRREF)
-  STRING(REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}") 
-  STRING(REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}") 
+   string (REGEX REPLACE "thread [0-9]*:" "thread (IDs):" TEST_STREAM "${TEST_STREAM}")
+   string (REGEX REPLACE ": ([^\n]*)[.]c " ": (file name) " TEST_STREAM "${TEST_STREAM}")
+   string (REGEX REPLACE " line [0-9]*" " line (number)" TEST_STREAM "${TEST_STREAM}")
+   string (REGEX REPLACE "v[1-9]*[.][0-9]*[.]" "version (number)." TEST_STREAM "${TEST_STREAM}")
+   string (REGEX REPLACE "[1-9]*[.][0-9]*[.][0-9]*[^)]*" "version (number)" TEST_STREAM "${TEST_STREAM}")
+   string (REGEX REPLACE "H5Eget_auto[1-2]*" "H5Eget_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
+   string (REGEX REPLACE "H5Eset_auto[1-2]*" "H5Eset_auto(1 or 2)" TEST_STREAM "${TEST_STREAM}")
   if (NOT TEST_ERRREF)
     file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
   else (NOT TEST_ERRREF)
@@ -112,7 +112,7 @@ endif (TEST_MASK_ERROR)
 
 if (TEST_FILTER)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
-  STRING(REGEX REPLACE "${TEST_FILTER}" "" TEST_STREAM "${TEST_STREAM}") 
+   string (REGEX REPLACE "${TEST_FILTER}" "" TEST_STREAM "${TEST_STREAM}")
   file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
 endif (TEST_FILTER)
 
@@ -123,21 +123,21 @@ if (NOT TEST_SKIP_COMPARE)
   endif (WIN32 AND NOT MINGW)
 
   # now compare the output with the reference
-  EXECUTE_PROCESS (
+  execute_process (
       COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
       RESULT_VARIABLE TEST_RESULT
   )
   if (NOT ${TEST_RESULT} STREQUAL 0)
   set (TEST_RESULT 0)
   file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
-  LIST (LENGTH test_act len_act)
+  list (LENGTH test_act len_act)
   file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref)
-  LIST (LENGTH test_ref len_ref)
+  list (LENGTH test_ref len_ref)
   if (NOT ${len_act} STREQUAL "0")
-    MATH (EXPR _FP_LEN "${len_ref} - 1")
+    math (EXPR _FP_LEN "${len_ref} - 1")
     foreach (line RANGE 0 ${_FP_LEN})
-      LIST (GET test_act ${line} str_act)
-      LIST (GET test_ref ${line} str_ref)
+      list (GET test_act ${line} str_act)
+      list (GET test_ref ${line} str_ref)
       if (NOT "${str_act}" STREQUAL "${str_ref}")
         if (NOT "${str_act}" STREQUAL "")
           set (TEST_RESULT 1)
@@ -157,7 +157,7 @@ if (NOT TEST_SKIP_COMPARE)
   if (NOT ${TEST_RESULT} STREQUAL 0)
     message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}")
   endif (NOT ${TEST_RESULT} STREQUAL 0)
-  
+
   if (TEST_ERRREF)
     if (WIN32 AND NOT MINGW)
       file (READ ${TEST_FOLDER}/${TEST_ERRREF} TEST_STREAM)
@@ -165,22 +165,22 @@ if (NOT TEST_SKIP_COMPARE)
     endif (WIN32 AND NOT MINGW)
 
     # now compare the error output with the error reference
-    EXECUTE_PROCESS (
+    execute_process (
         COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT}.err ${TEST_FOLDER}/${TEST_ERRREF}
         RESULT_VARIABLE TEST_RESULT
     )
     if (NOT ${TEST_RESULT} STREQUAL 0)
     set (TEST_RESULT 0)
     file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT}.err test_act)
-    LIST (LENGTH test_act len_act)
+    list (LENGTH test_act len_act)
     file (STRINGS ${TEST_FOLDER}/${TEST_ERRREF} test_ref)
-    LIST (LENGTH test_ref len_ref)
-    MATH (EXPR _FP_LEN "${len_ref} - 1")
+    list (LENGTH test_ref len_ref)
+    math (EXPR _FP_LEN "${len_ref} - 1")
     if (NOT ${len_act} STREQUAL "0")
-      MATH (EXPR _FP_LEN "${len_ref} - 1")
+      math (EXPR _FP_LEN "${len_ref} - 1")
       foreach (line RANGE 0 ${_FP_LEN})
-        LIST (GET test_act ${line} str_act)
-        LIST (GET test_ref ${line} str_ref)
+        list (GET test_act ${line} str_act)
+        list (GET test_ref ${line} str_ref)
         if (NOT "${str_act}" STREQUAL "${str_ref}")
           if (NOT "${str_act}" STREQUAL "")
             set (TEST_RESULT 1)
diff --git a/config/lt_vers.am b/config/lt_vers.am
index 36de8fe..401bcb9 100644
--- a/config/lt_vers.am
+++ b/config/lt_vers.am
@@ -19,7 +19,7 @@
 # After making changes, run bin/reconfigure to update other configure related
 # files like Makefile.in.
 LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 222
+LT_VERS_REVISION = 223
 LT_VERS_AGE = 0
 
 ## If the API changes *at all*, increment LT_VERS_INTERFACE and