Hdf5 1 10 doxygen merges (#684)

* HDFFV-10865 - merge from dev, HDFArray perf fix.

* Remove duplicate setting

* Whitespace changes after clang format

* Undo version 11 clang format changes

* Merge CMake changes from develop

* test testing script merge from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge small changes from develop

* Minor non-space formatting changes

* #386 copyright corrections for java folder

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Merge updates

#358 patches from vtk
#361 fix header guard spelling

* format fix

* Fix missing underscore and make H5public.h closer to dev

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup

* format alignment

* Add missing test ref file

* Merge #380 from develop

* Finish java merges from develop

* Fix java issues with tests and javadoc

* Correct use of attribute access plist

* Remove debug code

* Remove unused variable

* Change file access to read only for java tests

* Split clang format operations.

* More javadoc comments

* Remove pre-split setting

* format source

* Change windows TS to use older VS.

* Mostly all javadoc fixes, one argument rename.

* synch file

* Merge of long double fix and compiler flags

* HDFFV-11229 merge changes from develop

* HDFFV-11229 correct test script

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* minor whitespace

* remove unneeded macro

* Committing clang-format changes

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Fortran target depends

* Remove incorrect source attribute

* Revert define removal

* printf specifiers and VS2015 min changes

* Committing clang-format changes

* Add time struct

* TRILAB-227 and tools debug merges from develop

* Merge various changes from dev

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

* doxygen changes merged from develop

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

1 files changed, 23 insertions, 4 deletions

diff --git a/configure.ac b/configure.ac
index 4a710fd..e9776f5 100644
--- a/configure.ac
+++ b/configure.ac
@@ -1089,18 +1089,37 @@ if test "X$HDF5_DOXYGEN" = "Xyes"; then
   AC_SUBST([DOXYGEN_OPTIMIZE_OUTPUT_FOR_C])
   AC_SUBST([DOXYGEN_MACRO_EXPANSION])
   AC_SUBST([DOXYGEN_OUTPUT_DIRECTORY])
-
+  AC_SUBST([DOXYGEN_EXAMPLES_DIRECTORY])
+  AC_SUBST([DOXYGEN_LAYOUT_FILE])
+  AC_SUBST([DOXYGEN_HTML_HEADER])
+  AC_SUBST([DOXYGEN_HTML_FOOTER])
+  AC_SUBST([DOXYGEN_HTML_EXTRA_STYLESHEET])
+  AC_SUBST([DOXYGEN_HTML_EXTRA_FILES])
+  AC_SUBST([DOXYGEN_SERVER_BASED_SEARCH])
+  AC_SUBST([DOXYGEN_EXTERNAL_SEARCH])
+  AC_SUBST([DOXYGEN_SEARCHENGINE_URL])
+
+# SRCDIR Environment variables used inside doxygen macro for the source location:
   DOXYGEN_PACKAGE=${PACKAGE_NAME}
   DOXYGEN_VERSION_STRING=${PACKAGE_VERSION}
   DOXYGEN_INCLUDE_ALIASES='$(SRCDIR)/doxygen/aliases'
   DOXYGEN_PROJECT_LOGO='$(SRCDIR)/doxygen/img/HDFG-logo.png'
-  DOXYGEN_PROJECT_BRIEF="C-API Reference"
+  DOXYGEN_PROJECT_BRIEF=
   DOXYGEN_INPUT_DIRECTORY='$(SRCDIR) $(SRCDIR)/doxygen/dox'
   DOXYGEN_OPTIMIZE_OUTPUT_FOR_C=YES
   DOXYGEN_MACRO_EXPANSION=YES
   DOXYGEN_OUTPUT_DIRECTORY=hdf5lib_docs
-
-  DX_INIT_DOXYGEN([HDF5], [../doxygen/Doxyfile], [hdf5lib_docs])
+  DOXYGEN_EXAMPLES_DIRECTORY='$(SRCDIR)/doxygen/examples $(SRCDIR)/src $(SRCDIR)/examples $(SRCDIR)/test'
+  DOXYGEN_LAYOUT_FILE='$(SRCDIR)/doxygen/hdf5doxy_layout.xml'
+  DOXYGEN_HTML_HEADER='$(SRCDIR)/doxygen/hdf5_header.html'
+  DOXYGEN_HTML_FOOTER='$(SRCDIR)/doxygen/hdf5_footer.html'
+  DOXYGEN_HTML_EXTRA_STYLESHEET='$(SRCDIR)/doxygen/hdf5doxy.css'
+  DOXYGEN_HTML_EXTRA_FILES='$(SRCDIR)/doxygen/hdf5_navtree_hacks.js $(SRCDIR)/doxygen/img/ftv2node.png $(SRCDIR)/doxygen/img/ftv2pnode.png'
+  DOXYGEN_SERVER_BASED_SEARCH=NO
+  DOXYGEN_EXTERNAL_SEARCH=NO
+  DOXYGEN_SEARCHENGINE_URL=
+
+  DX_INIT_DOXYGEN([HDF5], [./doxygen/Doxyfile], [hdf5lib_docs])
 
 else
   AC_MSG_RESULT([no])