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authorFrank Baker <fbaker@hdfgroup.org>2005-07-19 17:28:56 (GMT)
committerFrank Baker <fbaker@hdfgroup.org>2005-07-19 17:28:56 (GMT)
commit794ba0a251af47b8e3c60afa2fe92d267e2a6b55 (patch)
treef24cea3b81ff02fa3f31c0a1c4e80fa10f4393c0 /doc/html/Caching.html
parentd2e92fd23610c3ccdddbbc55484e54a5a21a9252 (diff)
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[svn-r11084]
Description: All HDF5 user documentation has been moved to a separate hdf5doc/ repository, managed under Subversion. With this 'cvs commit', all files are stripped from hdf5/doc/. THIS CHANGE IS APPLIED ONLY TO THE HDF5 DEVELOPMENT BRANCH, post Release 1.6.x; it is not applied to the release branches.
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-<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN">
-<html>
- <head>
- <title>Data Caching</title>
-
-<!-- #BeginLibraryItem "/ed_libs/styles_UG.lbi" -->
-<!--
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- -->
-
-<link href="ed_styles/UGelect.css" rel="stylesheet" type="text/css">
-<!-- #EndLibraryItem --></head>
-
- <body bgcolor="#FFFFFF">
-
-
-<!-- #BeginLibraryItem "/ed_libs/NavBar_UG.lbi" --><hr>
-<center>
-<table border=0 width=98%>
-<tr><td valign=top align=left>
- <a href="index.html">HDF5 documents and links</a>&nbsp;<br>
- <a href="H5.intro.html">Introduction to HDF5</a>&nbsp;<br>
- <a href="RM_H5Front.html">HDF5 Reference Manual</a>&nbsp;<br>
- <a href="http://hdf.ncsa.uiuc.edu/HDF5/doc/UG/index.html">HDF5 User's Guide for Release 1.6</a>&nbsp;<br>
- <!--
- <a href="Glossary.html">Glossary</a><br>
- -->
-</td>
-<td valign=top align=right>
- And in this document, the
- <a href="H5.user.html"><strong>HDF5 User's Guide from Release 1.4.5:</strong></a>&nbsp;&nbsp;&nbsp;&nbsp;
- <br>
- <a href="Files.html">Files</a>&nbsp;&nbsp;
- <a href="Datasets.html">Datasets</a>&nbsp;&nbsp;
- <a href="Datatypes.html">Datatypes</a>&nbsp;&nbsp;
- <a href="Dataspaces.html">Dataspaces</a>&nbsp;&nbsp;
- <a href="Groups.html">Groups</a>&nbsp;&nbsp;
- <br>
- <a href="References.html">References</a>&nbsp;&nbsp;
- <a href="Attributes.html">Attributes</a>&nbsp;&nbsp;
- <a href="Properties.html">Property Lists</a>&nbsp;&nbsp;
- <a href="Errors.html">Error Handling</a>&nbsp;&nbsp;
- <br>
- <a href="Filters.html">Filters</a>&nbsp;&nbsp;
- <a href="Caching.html">Caching</a>&nbsp;&nbsp;
- <a href="Chunking.html">Chunking</a>&nbsp;&nbsp;
- <a href="MountingFiles.html">Mounting Files</a>&nbsp;&nbsp;
- <br>
- <a href="Performance.html">Performance</a>&nbsp;&nbsp;
- <a href="Debugging.html">Debugging</a>&nbsp;&nbsp;
- <a href="Environment.html">Environment</a>&nbsp;&nbsp;
- <a href="ddl.html">DDL</a>&nbsp;&nbsp;
-</td></tr>
-</table>
-</center>
-<hr>
-<!-- #EndLibraryItem --><h1>Data Caching</h1>
-
- <h2>1. Meta Data Caching</h2>
-
- <p>The HDF5 library caches two types of data: meta data and raw
- data. The meta data cache holds file objects like the file
- header, symbol table nodes, global heap collections, object
- headers and their messages, etc. in a partially decoded
- state. The cache has a fixed number of entries which is set with
- the file access property list (defaults to 10k) and each entry
- can hold a single meta data object. Collisions between objects
- are handled by preempting the older object in favor of the new
- one.
-
- <h2>2. Raw Data Chunk Caching</h2>
-
- <p>Raw data chunks are cached because I/O requests at the
- application level typically don't map well to chunks at the
- storage level. The chunk cache has a maximum size in bytes
- set with the file access property list (defaults to 1MB) and
- when the limit is reached chunks are preempted based on the
- following set of heuristics.
-
- <ul>
- <li>Chunks which have not been accessed for a long time
- relative to other chunks are penalized.
- <li>Chunks which have been accessed frequently in the recent
- past are favored.
- <li>Chunks which are completely read and not written, completely
- written but not read, or completely read and completely
- written are penalized according to <em>w0</em>, an
- application-defined weight between 0 and 1 inclusive. A weight
- of zero does not penalize such chunks while a weight of 1
- penalizes those chunks more than all other chunks. The
- default is 0.75.
- <li>Chunks which are larger than the maximum cache size do not
- participate in the cache.
- </ul>
-
- <p>One should choose large values for <em>w0</em> if I/O requests
- typically do not overlap but smaller values for <em>w0</em> if
- the requests do overlap. For instance, reading an entire 2d
- array by reading from non-overlapping "windows" in a row-major
- order would benefit from a high <em>w0</em> value while reading
- a diagonal accross the dataset where each request overlaps the
- previous request would benefit from a small <em>w0</em>.
-
- <h2>3. Data Caching Operations</h2>
-
- <p>The cache parameters for both caches are part of a file access
- property list and are set and queried with this pair of
- functions:
-
- <dl>
- <dt><code>herr_t H5Pset_cache(hid_t <em>plist</em>, unsigned int
- <em>mdc_nelmts</em>, size_t <em>rdcc_nbytes</em>, double
- <em>w0</em>)</code>
- <dt><code>herr_t H5Pget_cache(hid_t <em>plist</em>, unsigned int
- *<em>mdc_nelmts</em>, size_t *<em>rdcc_nbytes</em>, double
- <em>w0</em>)</code>
- <dd>Sets or queries the meta data cache and raw data chunk cache
- parameters. The <em>plist</em> is a file access property
- list. The number of elements (objects) in the meta data cache
- is <em>mdc_nelmts</em>. The total size of the raw data chunk
- cache and the preemption policy is <em>rdcc_nbytes</em> and
- <em>w0</em>. For <code>H5Pget_cache()</code> any (or all) of
- the pointer arguments may be null pointers.
- </dl>
-
-
-<!-- #BeginLibraryItem "/ed_libs/NavBar_UG.lbi" --><hr>
-<center>
-<table border=0 width=98%>
-<tr><td valign=top align=left>
- <a href="index.html">HDF5 documents and links</a>&nbsp;<br>
- <a href="H5.intro.html">Introduction to HDF5</a>&nbsp;<br>
- <a href="RM_H5Front.html">HDF5 Reference Manual</a>&nbsp;<br>
- <a href="http://hdf.ncsa.uiuc.edu/HDF5/doc/UG/index.html">HDF5 User's Guide for Release 1.6</a>&nbsp;<br>
- <!--
- <a href="Glossary.html">Glossary</a><br>
- -->
-</td>
-<td valign=top align=right>
- And in this document, the
- <a href="H5.user.html"><strong>HDF5 User's Guide from Release 1.4.5:</strong></a>&nbsp;&nbsp;&nbsp;&nbsp;
- <br>
- <a href="Files.html">Files</a>&nbsp;&nbsp;
- <a href="Datasets.html">Datasets</a>&nbsp;&nbsp;
- <a href="Datatypes.html">Datatypes</a>&nbsp;&nbsp;
- <a href="Dataspaces.html">Dataspaces</a>&nbsp;&nbsp;
- <a href="Groups.html">Groups</a>&nbsp;&nbsp;
- <br>
- <a href="References.html">References</a>&nbsp;&nbsp;
- <a href="Attributes.html">Attributes</a>&nbsp;&nbsp;
- <a href="Properties.html">Property Lists</a>&nbsp;&nbsp;
- <a href="Errors.html">Error Handling</a>&nbsp;&nbsp;
- <br>
- <a href="Filters.html">Filters</a>&nbsp;&nbsp;
- <a href="Caching.html">Caching</a>&nbsp;&nbsp;
- <a href="Chunking.html">Chunking</a>&nbsp;&nbsp;
- <a href="MountingFiles.html">Mounting Files</a>&nbsp;&nbsp;
- <br>
- <a href="Performance.html">Performance</a>&nbsp;&nbsp;
- <a href="Debugging.html">Debugging</a>&nbsp;&nbsp;
- <a href="Environment.html">Environment</a>&nbsp;&nbsp;
- <a href="ddl.html">DDL</a>&nbsp;&nbsp;
-</td></tr>
-</table>
-</center>
-<hr>
-<!-- #EndLibraryItem --><!-- #BeginLibraryItem "/ed_libs/Footer.lbi" --><address>
-<a href="mailto:hdfhelp@ncsa.uiuc.edu">HDF Help Desk</a>
-<br>
-Describes HDF5 Release 1.4.5, February 2003
-</address><!-- #EndLibraryItem --><!-- Created: Tue May 26 15:20:14 EDT 1998 -->
-<!-- hhmts start -->
-Last modified: 13 December 1999
-<!-- hhmts end -->
-
-
-</body>
-</html>