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authorFrank Baker <fbaker@hdfgroup.org>2000-12-22 20:47:59 (GMT)
committerFrank Baker <fbaker@hdfgroup.org>2000-12-22 20:47:59 (GMT)
commitc1d537db2b803d6908fe3f21f62c592c9cd2bf70 (patch)
tree56a6cb7f00a6fbec3b071722df9705e744368073 /doc/html/Tutor/examples
parentd4c3773742b8dee426e7325fee4e8fc4015f2802 (diff)
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[svn-r3196]
Purpose: Adding Tutorial to development branch (R 1.4) Platforms tested: IE 5
Diffstat (limited to 'doc/html/Tutor/examples')
-rw-r--r--doc/html/Tutor/examples/h5_compound.c153
-rw-r--r--doc/html/Tutor/examples/h5_copy.c148
-rw-r--r--doc/html/Tutor/examples/h5_crtatt.c46
-rw-r--r--doc/html/Tutor/examples/h5_crtdat.c34
-rw-r--r--doc/html/Tutor/examples/h5_crtfile.c19
-rw-r--r--doc/html/Tutor/examples/h5_crtgrp.c24
-rw-r--r--doc/html/Tutor/examples/h5_crtgrpar.c32
-rw-r--r--doc/html/Tutor/examples/h5_crtgrpd.c74
-rw-r--r--doc/html/Tutor/examples/h5_extend.c141
-rw-r--r--doc/html/Tutor/examples/h5_hyperslab.c192
-rw-r--r--doc/html/Tutor/examples/h5_iterate.c111
-rw-r--r--doc/html/Tutor/examples/h5_mount.c119
-rw-r--r--doc/html/Tutor/examples/h5_rdwt.c37
-rw-r--r--doc/html/Tutor/examples/h5_read.c136
-rw-r--r--doc/html/Tutor/examples/h5_ref2objr.c93
-rw-r--r--doc/html/Tutor/examples/h5_ref2objw.c120
-rw-r--r--doc/html/Tutor/examples/h5_ref2regr.c119
-rw-r--r--doc/html/Tutor/examples/h5_ref2regw.c112
-rw-r--r--doc/html/Tutor/examples/h5_reference.c146
19 files changed, 1856 insertions, 0 deletions
diff --git a/doc/html/Tutor/examples/h5_compound.c b/doc/html/Tutor/examples/h5_compound.c
new file mode 100644
index 0000000..4bb4ad1
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_compound.c
@@ -0,0 +1,153 @@
+/*
+ * This example shows how to create a compound data type,
+ * write an array which has the compound data type to the file,
+ * and read back fields' subsets.
+ */
+
+#include "hdf5.h"
+
+#define FILE "SDScompound.h5"
+#define DATASETNAME "ArrayOfStructures"
+#define LENGTH 10
+#define RANK 1
+
+int
+main(void)
+{
+
+ /* First structure and dataset*/
+ typedef struct s1_t {
+ int a;
+ float b;
+ double c;
+ } s1_t;
+ s1_t s1[LENGTH];
+ hid_t s1_tid; /* File datatype identifier */
+
+ /* Second structure (subset of s1_t) and dataset*/
+ typedef struct s2_t {
+ double c;
+ int a;
+ } s2_t;
+ s2_t s2[LENGTH];
+ hid_t s2_tid; /* Memory datatype handle */
+
+ /* Third "structure" ( will be used to read float field of s1) */
+ hid_t s3_tid; /* Memory datatype handle */
+ float s3[LENGTH];
+
+ int i;
+ hid_t file, dataset, space; /* Handles */
+ herr_t status;
+ hsize_t dim[] = {LENGTH}; /* Dataspace dimensions */
+
+
+ /*
+ * Initialize the data
+ */
+ for (i = 0; i< LENGTH; i++) {
+ s1[i].a = i;
+ s1[i].b = i*i;
+ s1[i].c = 1./(i+1);
+ }
+
+ /*
+ * Create the data space.
+ */
+ space = H5Screate_simple(RANK, dim, NULL);
+
+ /*
+ * Create the file.
+ */
+ file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create the memory data type.
+ */
+ s1_tid = H5Tcreate (H5T_COMPOUND, sizeof(s1_t));
+ H5Tinsert(s1_tid, "a_name", HOFFSET(s1_t, a), H5T_NATIVE_INT);
+ H5Tinsert(s1_tid, "c_name", HOFFSET(s1_t, c), H5T_NATIVE_DOUBLE);
+ H5Tinsert(s1_tid, "b_name", HOFFSET(s1_t, b), H5T_NATIVE_FLOAT);
+
+ /*
+ * Create the dataset.
+ */
+ dataset = H5Dcreate(file, DATASETNAME, s1_tid, space, H5P_DEFAULT);
+
+ /*
+ * Wtite data to the dataset;
+ */
+ status = H5Dwrite(dataset, s1_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s1);
+
+ /*
+ * Release resources
+ */
+ H5Tclose(s1_tid);
+ H5Sclose(space);
+ H5Dclose(dataset);
+ H5Fclose(file);
+
+ /*
+ * Open the file and the dataset.
+ */
+ file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+
+ dataset = H5Dopen(file, DATASETNAME);
+
+ /*
+ * Create a data type for s2
+ */
+ s2_tid = H5Tcreate(H5T_COMPOUND, sizeof(s2_t));
+
+ H5Tinsert(s2_tid, "c_name", HOFFSET(s2_t, c), H5T_NATIVE_DOUBLE);
+ H5Tinsert(s2_tid, "a_name", HOFFSET(s2_t, a), H5T_NATIVE_INT);
+
+ /*
+ * Read two fields c and a from s1 dataset. Fields in the file
+ * are found by their names "c_name" and "a_name".
+ */
+ status = H5Dread(dataset, s2_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s2);
+
+ /*
+ * Display the fields
+ */
+ printf("\n");
+ printf("Field c : \n");
+ for( i = 0; i < LENGTH; i++) printf("%.4f ", s2[i].c);
+ printf("\n");
+
+ printf("\n");
+ printf("Field a : \n");
+ for( i = 0; i < LENGTH; i++) printf("%d ", s2[i].a);
+ printf("\n");
+
+ /*
+ * Create a data type for s3.
+ */
+ s3_tid = H5Tcreate(H5T_COMPOUND, sizeof(float));
+
+ status = H5Tinsert(s3_tid, "b_name", 0, H5T_NATIVE_FLOAT);
+
+ /*
+ * Read field b from s1 dataset. Field in the file is found by its name.
+ */
+ status = H5Dread(dataset, s3_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s3);
+
+ /*
+ * Display the field
+ */
+ printf("\n");
+ printf("Field b : \n");
+ for( i = 0; i < LENGTH; i++) printf("%.4f ", s3[i]);
+ printf("\n");
+
+ /*
+ * Release resources
+ */
+ H5Tclose(s2_tid);
+ H5Tclose(s3_tid);
+ H5Dclose(dataset);
+ H5Fclose(file);
+
+ return 0;
+}
diff --git a/doc/html/Tutor/examples/h5_copy.c b/doc/html/Tutor/examples/h5_copy.c
new file mode 100644
index 0000000..b0a5e00
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_copy.c
@@ -0,0 +1,148 @@
+/***********************************************************************/
+/* */
+/* PROGRAM: h5_copy.c */
+/* PURPOSE: Shows how to use the H5SCOPY function. */
+/* DESCRIPTION: */
+/* This program creates two files, copy1.h5, and copy2.h5. */
+/* In copy1.h5, it creates a 3x4 dataset called 'Copy1', */
+/* and write 0's to this dataset. */
+/* In copy2.h5, it create a 3x4 dataset called 'Copy2', */
+/* and write 1's to this dataset. */
+/* It closes both files, reopens both files, selects two */
+/* points in copy1.h5 and writes values to them. Then it */
+/* does an H5Scopy from the first file to the second, and */
+/* writes the values to copy2.h5. It then closes the */
+/* files, reopens them, and prints the contents of the */
+/* two datasets. */
+/* */
+/***********************************************************************/
+
+#include "hdf5.h"
+#define FILE1 "copy1.h5"
+#define FILE2 "copy2.h5"
+
+#define RANK 2
+#define DIM1 3
+#define DIM2 4
+#define NUMP 2
+
+int main (void)
+{
+ hid_t file1, file2, dataset1, dataset2;
+ hid_t mid1, mid2, fid1, fid2;
+ hsize_t fdim[] = {DIM1, DIM2};
+ hsize_t mdim[] = {DIM1, DIM2};
+ hsize_t start[2], stride[2], count[2], block[2];
+ int buf1[DIM1][DIM2];
+ int buf2[DIM1][DIM2];
+ int bufnew[DIM1][DIM2];
+ int val[] = {53, 59};
+ hsize_t marray[] = {2};
+ hssize_t coord[NUMP][RANK];
+ herr_t ret;
+ uint i, j;
+
+/***********************************************************************/
+/* */
+/* Create two files containing identical datasets. Write 0's to one */
+/* and 1's to the other. */
+/* */
+/***********************************************************************/
+
+ for ( i = 0; i < DIM1; i++ )
+ for ( j = 0; j < DIM2; j++ )
+ buf1[i][j] = 0;
+
+ for ( i = 0; i < DIM1; i++ )
+ for ( j = 0; j < DIM2; j++ )
+ buf2[i][j] = 1;
+
+ file1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ file2 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ fid1 = H5Screate_simple (RANK, fdim, NULL);
+ fid2 = H5Screate_simple (RANK, fdim, NULL);
+
+ dataset1 = H5Dcreate (file1, "Copy1", H5T_NATIVE_INT, fid1, H5P_DEFAULT);
+ dataset2 = H5Dcreate (file2, "Copy2", H5T_NATIVE_INT, fid2, H5P_DEFAULT);
+
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1);
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2);
+
+ ret = H5Dclose (dataset1);
+ ret = H5Dclose (dataset2);
+
+ ret = H5Sclose (fid1);
+ ret = H5Sclose (fid2);
+
+ ret = H5Fclose (file1);
+ ret = H5Fclose (file2);
+
+/***********************************************************************/
+/* */
+/* Open the two files. Select two points in one file, write values to */
+/* those point locations, then do H5Scopy and write the values to the */
+/* other file. Close files. */
+/* */
+/***********************************************************************/
+
+ file1 = H5Fopen (FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
+ file2 = H5Fopen (FILE2, H5F_ACC_RDWR, H5P_DEFAULT);
+ dataset1 = H5Dopen (file1, "Copy1");
+ dataset2 = H5Dopen (file2, "Copy2");
+ fid1 = H5Dget_space (dataset1);
+ mid1 = H5Screate_simple(1, marray, NULL);
+ coord[0][0] = 0; coord[0][1] = 3;
+ coord[1][0] = 0; coord[1][1] = 1;
+
+ ret = H5Sselect_elements (fid1, H5S_SELECT_SET, NUMP, (const hssize_t **)coord);
+
+ ret = H5Dwrite (dataset1, H5T_NATIVE_INT, mid1, fid1, H5P_DEFAULT, val);
+
+ fid2 = H5Scopy (fid1);
+
+ ret = H5Dwrite (dataset2, H5T_NATIVE_INT, mid1, fid2, H5P_DEFAULT, val);
+
+ ret = H5Dclose (dataset1);
+ ret = H5Dclose (dataset2);
+ ret = H5Sclose (fid1);
+ ret = H5Sclose (fid2);
+ ret = H5Fclose (file1);
+ ret = H5Fclose (file2);
+ ret = H5Sclose (mid1);
+
+/***********************************************************************/
+/* */
+/* Open both files and print the contents of the datasets. */
+/* */
+/***********************************************************************/
+
+ file1 = H5Fopen (FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
+ file2 = H5Fopen (FILE2, H5F_ACC_RDWR, H5P_DEFAULT);
+ dataset1 = H5Dopen (file1, "Copy1");
+ dataset2 = H5Dopen (file2, "Copy2");
+
+ ret = H5Dread (dataset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, bufnew);
+
+ printf ("\nDataset 'Copy1' in file 'copy1.h5' contains: \n");
+ for (i=0;i<DIM1; i++) {
+ for (j=0;j<DIM2;j++) printf ("%3d ", bufnew[i][j]);
+ printf("\n");
+ }
+
+ printf ("\nDataset 'Copy2' in file 'copy2.h5' contains: \n");
+
+ ret = H5Dread (dataset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, bufnew);
+
+ for (i=0;i<DIM1; i++) {
+ for (j=0;j<DIM2;j++) printf ("%3d ", bufnew[i][j]);
+ printf("\n");
+ }
+ ret = H5Dclose (dataset1);
+ ret = H5Dclose (dataset2);
+ ret = H5Fclose (file1);
+ ret = H5Fclose (file2);
+
+}
diff --git a/doc/html/Tutor/examples/h5_crtatt.c b/doc/html/Tutor/examples/h5_crtatt.c
new file mode 100644
index 0000000..a2b887c
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_crtatt.c
@@ -0,0 +1,46 @@
+/*
+ * Creating a dataset attribute.
+ */
+
+#include <hdf5.h>
+#define FILE "dset.h5"
+
+main() {
+
+ hid_t file_id, dataset_id, attribute_id, dataspace_id; /* identifiers */
+ hsize_t dims;
+ int attr_data[2];
+ herr_t status;
+
+ /* Initialize the attribute data. */
+ attr_data[0] = 100;
+ attr_data[1] = 200;
+
+ /* Open an existing file. */
+ file_id = H5Fopen(FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /* Open an existing dataset. */
+ dataset_id = H5Dopen(file_id, "/dset");
+
+ /* Create the data space for the attribute. */
+ dims = 2;
+ dataspace_id = H5Screate_simple(1, &dims, NULL);
+
+ /* Create a dataset attribute. */
+ attribute_id = H5Acreate(dataset_id, "attr", H5T_STD_I32BE, dataspace_id, H5P_DEFAULT);
+
+ /* Write the attribute data. */
+ status = H5Awrite(attribute_id, H5T_NATIVE_INT, attr_data);
+
+ /* Close the attribute. */
+ status = H5Aclose(attribute_id);
+
+ /* Close the dataspace. */
+ status = H5Sclose(dataspace_id);
+
+ /* Close to the dataset. */
+ status = H5Dclose(dataset_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
diff --git a/doc/html/Tutor/examples/h5_crtdat.c b/doc/html/Tutor/examples/h5_crtdat.c
new file mode 100644
index 0000000..d704cf1
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_crtdat.c
@@ -0,0 +1,34 @@
+/*
+ * Creating and closing a dataset.
+ */
+
+#include <hdf5.h>
+#define FILE "dset.h5"
+
+main() {
+
+ hid_t file_id, dataset_id, dataspace_id; /* identifiers */
+ hsize_t dims[2];
+ herr_t status;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create the data space for the dataset. */
+ dims[0] = 4;
+ dims[1] = 6;
+ dataspace_id = H5Screate_simple(2, dims, NULL);
+
+ /* Create the dataset. */
+ dataset_id = H5Dcreate(file_id, "/dset", H5T_STD_I32BE, dataspace_id, H5P_DEFAULT);
+
+ /* End access to the dataset and release resources used by it. */
+ status = H5Dclose(dataset_id);
+
+ /* Terminate access to the data space. */
+ status = H5Sclose(dataspace_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
+
diff --git a/doc/html/Tutor/examples/h5_crtfile.c b/doc/html/Tutor/examples/h5_crtfile.c
new file mode 100644
index 0000000..680cde8
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_crtfile.c
@@ -0,0 +1,19 @@
+/*
+ * Creating and closing a file.
+ */
+
+#include <hdf5.h>
+#define FILE "file.h5"
+
+main() {
+
+ hid_t file_id; /* file identifier */
+ herr_t status;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Terminate access to the file. */
+ status = H5Fclose(file_id);
+}
+
diff --git a/doc/html/Tutor/examples/h5_crtgrp.c b/doc/html/Tutor/examples/h5_crtgrp.c
new file mode 100644
index 0000000..a6aad93
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_crtgrp.c
@@ -0,0 +1,24 @@
+/*
+ * Creating and closing a group.
+ */
+
+#include <hdf5.h>
+#define FILE "group.h5"
+
+main() {
+
+ hid_t file_id, group_id; /* identifiers */
+ herr_t status;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create a group named "/MyGroup" in the file. */
+ group_id = H5Gcreate(file_id, "/MyGroup", 0);
+
+ /* Close the group. */
+ status = H5Gclose(group_id);
+
+ /* Terminate access to the file. */
+ status = H5Fclose(file_id);
+}
diff --git a/doc/html/Tutor/examples/h5_crtgrpar.c b/doc/html/Tutor/examples/h5_crtgrpar.c
new file mode 100644
index 0000000..6dcc003
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_crtgrpar.c
@@ -0,0 +1,32 @@
+/*
+ * Creating groups using absolute and relative names.
+ */
+
+#include <hdf5.h>
+#define FILE "groups.h5"
+
+main() {
+
+ hid_t file_id, group1_id, group2_id, group3_id; /* identifiers */
+ herr_t status;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create group "MyGroup" in the root group using absolute name. */
+ group1_id = H5Gcreate(file_id, "/MyGroup", 0);
+
+ /* Create group "Group_A" in group "MyGroup" using absolute name. */
+ group2_id = H5Gcreate(file_id, "/MyGroup/Group_A", 0);
+
+ /* Create group "Group_B" in group "MyGroup" using relative name. */
+ group3_id = H5Gcreate(group1_id, "Group_B", 0);
+
+ /* Close groups. */
+ status = H5Gclose(group1_id);
+ status = H5Gclose(group2_id);
+ status = H5Gclose(group3_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
diff --git a/doc/html/Tutor/examples/h5_crtgrpd.c b/doc/html/Tutor/examples/h5_crtgrpd.c
new file mode 100644
index 0000000..e497764
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_crtgrpd.c
@@ -0,0 +1,74 @@
+/*
+ * Create two datasets within groups.
+ */
+
+#include <hdf5.h>
+#define FILE "groups.h5"
+
+main() {
+
+ hid_t file_id, group_id, dataset_id, dataspace_id; /* identifiers */
+ hsize_t dims[2];
+ herr_t status;
+ int i, j, dset1_data[3][3], dset2_data[2][10];
+
+ /* Initialize the first dataset. */
+ for (i = 0; i < 3; i++)
+ for (j = 0; j < 3; j++)
+ dset1_data[i][j] = j + 1;
+
+ /* Initialize the second dataset. */
+ for (i = 0; i < 2; i++)
+ for (j = 0; j < 10; j++)
+ dset2_data[i][j] = j + 1;
+
+ /* Open an existing file. */
+ file_id = H5Fopen(FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /* Create the data space for the first dataset. */
+ dims[0] = 3;
+ dims[1] = 3;
+ dataspace_id = H5Screate_simple(2, dims, NULL);
+
+ /* Create a dataset in group "MyGroup". */
+ dataset_id = H5Dcreate(file_id, "/MyGroup/dset1", H5T_STD_I32BE, dataspace_id,
+ H5P_DEFAULT);
+
+ /* Write the first dataset. */
+ status = H5Dwrite(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ dset1_data);
+
+ /* Close the data space for the first dataset. */
+ status = H5Sclose(dataspace_id);
+
+ /* Close the first dataset. */
+ status = H5Dclose(dataset_id);
+
+ /* Open an existing group of the specified file. */
+ group_id = H5Gopen(file_id, "/MyGroup/Group_A");
+
+ /* Create the data space for the second dataset. */
+ dims[0] = 2;
+ dims[1] = 10;
+ dataspace_id = H5Screate_simple(2, dims, NULL);
+
+ /* Create the second dataset in group "Group_A". */
+ dataset_id = H5Dcreate(group_id, "dset2", H5T_STD_I32BE, dataspace_id, H5P_DEFAULT);
+
+ /* Write the second dataset. */
+ status = H5Dwrite(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ dset2_data);
+
+ /* Close the data space for the second dataset. */
+ status = H5Sclose(dataspace_id);
+
+ /* Close the second dataset */
+ status = H5Dclose(dataset_id);
+
+ /* Close the group. */
+ status = H5Gclose(group_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
+
diff --git a/doc/html/Tutor/examples/h5_extend.c b/doc/html/Tutor/examples/h5_extend.c
new file mode 100644
index 0000000..ae26ed6
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_extend.c
@@ -0,0 +1,141 @@
+/**************************************************************
+ *
+ * This example shows how to work with extendible datasets.
+ * In the current version of the library a dataset MUST be
+ * chunked in order to be extendible.
+ *
+ * This example is derived from the h5_extend_write.c and
+ * h5_read_chunk.c examples that are in the "Introduction
+ * to HDF5".
+ *
+ *************************************************************/
+
+#include "hdf5.h"
+
+#define FILE "ext.h5"
+#define DATASETNAME "ExtendibleArray"
+#define RANK 2
+
+int
+main (void)
+{
+ hid_t file; /* handles */
+ hid_t dataspace, dataset;
+ hid_t filespace;
+ hid_t cparms;
+ hid_t memspace;
+
+ hsize_t dims[2] = { 3, 3}; /* dataset dimensions
+ at creation time */
+ hsize_t dims1[2] = { 3, 3}; /* data1 dimensions */
+ hsize_t dims2[2] = { 7, 1}; /* data2 dimensions */
+
+ hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+ hsize_t size[2];
+ hssize_t offset[2];
+ hsize_t i,j;
+ herr_t status, status_n;
+ int data1[3][3] = { {1, 1, 1}, /* data to write */
+ {1, 1, 1},
+ {1, 1, 1} };
+
+ int data2[7] = { 2, 2, 2, 2, 2, 2, 2};
+
+ /* Variables used in reading data back */
+ hsize_t chunk_dims[2] ={2, 5};
+ hsize_t chunk_dimsr[2];
+ hsize_t dimsr[2];
+ int data_out[10][3];
+ int rank, rank_chunk;
+
+ /* Create the data space with unlimited dimensions. */
+ dataspace = H5Screate_simple (RANK, dims, maxdims);
+
+ /* Create a new file. If file exists its contents will be overwritten. */
+ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Modify dataset creation properties, i.e. enable chunking */
+ cparms = H5Pcreate (H5P_DATASET_CREATE);
+ status = H5Pset_chunk ( cparms, RANK, chunk_dims);
+
+ /* Create a new dataset within the file using cparms
+ creation properties. */
+ dataset = H5Dcreate (file, DATASETNAME, H5T_NATIVE_INT, dataspace,
+ cparms);
+
+ /* Extend the dataset. This call assures that dataset is 3 x 3.*/
+ size[0] = 3;
+ size[1] = 3;
+ status = H5Dextend (dataset, size);
+
+ /* Select a hyperslab */
+ filespace = H5Dget_space (dataset);
+ offset[0] = 0;
+ offset[1] = 0;
+ status = H5Sselect_hyperslab (filespace, H5S_SELECT_SET, offset, NULL,
+ dims1, NULL);
+
+ /* Write the data to the hyperslab */
+ status = H5Dwrite (dataset, H5T_NATIVE_INT, dataspace, filespace,
+ H5P_DEFAULT, data1);
+
+ /* Extend the dataset. Dataset becomes 10 x 3 */
+ dims[0] = dims1[0] + dims2[0];
+ size[0] = dims[0];
+ size[1] = dims[1];
+ status = H5Dextend (dataset, size);
+
+ /* Select a hyperslab */
+ filespace = H5Dget_space (dataset);
+ offset[0] = 3;
+ offset[1] = 0;
+ status = H5Sselect_hyperslab (filespace, H5S_SELECT_SET, offset, NULL,
+ dims2, NULL);
+
+ /* Define memory space */
+ dataspace = H5Screate_simple (RANK, dims2, NULL);
+
+ /* Write the data to the hyperslab */
+ status = H5Dwrite (dataset, H5T_NATIVE_INT, dataspace, filespace,
+ H5P_DEFAULT, data2);
+
+ /* Close resources */
+ status = H5Dclose (dataset);
+ status = H5Sclose (dataspace);
+ status = H5Sclose (filespace);
+ status = H5Fclose (file);
+
+/****************************************************************
+ Read the data back
+ ***************************************************************/
+
+ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dataset = H5Dopen (file, DATASETNAME);
+ filespace = H5Dget_space (dataset);
+ rank = H5Sget_simple_extent_ndims (filespace);
+ status_n = H5Sget_simple_extent_dims (filespace, dimsr, NULL);
+
+ cparms = H5Dget_create_plist (dataset);
+ if (H5D_CHUNKED == H5Pget_layout (cparms))
+ {
+ rank_chunk = H5Pget_chunk (cparms, 2, chunk_dimsr);
+ }
+
+ memspace = H5Screate_simple (rank,dimsr,NULL);
+ status = H5Dread (dataset, H5T_NATIVE_INT, memspace, filespace,
+ H5P_DEFAULT, data_out);
+ printf("\n");
+ printf("Dataset: \n");
+ for (j = 0; j < dimsr[0]; j++)
+ {
+ for (i = 0; i < dimsr[1]; i++)
+ printf("%d ", data_out[j][i]);
+ printf("\n");
+ }
+
+ status = H5Pclose (cparms);
+ status = H5Dclose (dataset);
+ status = H5Sclose (filespace);
+ status = H5Sclose (memspace);
+ status = H5Fclose (file);
+}
diff --git a/doc/html/Tutor/examples/h5_hyperslab.c b/doc/html/Tutor/examples/h5_hyperslab.c
new file mode 100644
index 0000000..fc953d5
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_hyperslab.c
@@ -0,0 +1,192 @@
+/************************************************************
+
+ This example shows how to write and read a hyperslab. It
+ is derived from the h5_read.c and h5_write.c examples in
+ the "Introduction to HDF5".
+
+ ************************************************************/
+
+#include "hdf5.h"
+
+#define FILE "sds.h5"
+#define DATASETNAME "IntArray"
+#define NX_SUB 3 /* hyperslab dimensions */
+#define NY_SUB 4
+#define NX 7 /* output buffer dimensions */
+#define NY 7
+#define NZ 3
+#define RANK 2
+#define RANK_OUT 3
+
+#define X 5 /* dataset dimensions */
+#define Y 6
+
+int
+main (void)
+{
+ hsize_t dimsf[2]; /* dataset dimensions */
+ int data[X][Y]; /* data to write */
+
+ /*
+ * Data and output buffer initialization.
+ */
+ hid_t file, dataset; /* handles */
+ hid_t dataspace;
+ hid_t memspace;
+ hsize_t dimsm[3]; /* memory space dimensions */
+ hsize_t dims_out[2]; /* dataset dimensions */
+ herr_t status;
+
+ int data_out[NX][NY][NZ ]; /* output buffer */
+
+ hsize_t count[2]; /* size of the hyperslab in the file */
+ hssize_t offset[2]; /* hyperslab offset in the file */
+ hsize_t count_out[3]; /* size of the hyperslab in memory */
+ hssize_t offset_out[3]; /* hyperslab offset in memory */
+ int i, j, k, status_n, rank;
+
+
+
+/*********************************************************
+ This writes data to the HDF5 file.
+ *********************************************************/
+
+ /*
+ * Data and output buffer initialization.
+ */
+ for (j = 0; j < X; j++) {
+ for (i = 0; i < Y; i++)
+ data[j][i] = i + j;
+ }
+ /*
+ * 0 1 2 3 4 5
+ * 1 2 3 4 5 6
+ * 2 3 4 5 6 7
+ * 3 4 5 6 7 8
+ * 4 5 6 7 8 9
+ */
+
+ /*
+ * Create a new file using H5F_ACC_TRUNC access,
+ * the default file creation properties, and the default file
+ * access properties.
+ */
+ file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Describe the size of the array and create the data space for fixed
+ * size dataset.
+ */
+ dimsf[0] = X;
+ dimsf[1] = Y;
+ dataspace = H5Screate_simple (RANK, dimsf, NULL);
+
+ /*
+ * Create a new dataset within the file using defined dataspace and
+ * default dataset creation properties.
+ */
+ dataset = H5Dcreate (file, DATASETNAME, H5T_STD_I32BE, dataspace,
+ H5P_DEFAULT);
+
+ /*
+ * Write the data to the dataset using default transfer properties.
+ */
+ status = H5Dwrite (dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, data);
+
+ /*
+ * Close/release resources.
+ */
+ H5Sclose (dataspace);
+ H5Dclose (dataset);
+ H5Fclose (file);
+
+
+/*************************************************************
+
+ This reads the hyperslab from the sds.h5 file just
+ created, into a 2-dimensional plane of the 3-dimensional
+ array.
+
+ ************************************************************/
+
+ for (j = 0; j < NX; j++) {
+ for (i = 0; i < NY; i++) {
+ for (k = 0; k < NZ ; k++)
+ data_out[j][i][k] = 0;
+ }
+ }
+
+ /*
+ * Open the file and the dataset.
+ */
+ file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dataset = H5Dopen (file, DATASETNAME);
+
+ dataspace = H5Dget_space (dataset); /* dataspace handle */
+ rank = H5Sget_simple_extent_ndims (dataspace);
+ status_n = H5Sget_simple_extent_dims (dataspace, dims_out, NULL);
+ printf("\nRank: %d\nDimensions: %lu x %lu \n", rank,
+ (unsigned long)(dims_out[0]), (unsigned long)(dims_out[1]));
+
+ /*
+ * Define hyperslab in the dataset.
+ */
+ offset[0] = 1;
+ offset[1] = 2;
+ count[0] = NX_SUB;
+ count[1] = NY_SUB;
+ status = H5Sselect_hyperslab (dataspace, H5S_SELECT_SET, offset, NULL,
+ count, NULL);
+
+ /*
+ * Define the memory dataspace.
+ */
+ dimsm[0] = NX;
+ dimsm[1] = NY;
+ dimsm[2] = NZ;
+ memspace = H5Screate_simple (RANK_OUT, dimsm, NULL);
+
+ /*
+ * Define memory hyperslab.
+ */
+ offset_out[0] = 3;
+ offset_out[1] = 0;
+ offset_out[2] = 0;
+ count_out[0] = NX_SUB;
+ count_out[1] = NY_SUB;
+ count_out[2] = 1;
+ status = H5Sselect_hyperslab (memspace, H5S_SELECT_SET, offset_out, NULL,
+ count_out, NULL);
+
+ /*
+ * Read data from hyperslab in the file into the hyperslab in
+ * memory and display.
+ */
+ status = H5Dread (dataset, H5T_NATIVE_INT, memspace, dataspace,
+ H5P_DEFAULT, data_out);
+ printf ("Data:\n ");
+ for (j = 0; j < NX; j++) {
+ for (i = 0; i < NY; i++) printf("%d ", data_out[j][i][0]);
+ printf("\n ");
+ }
+ printf("\n");
+ /*
+ * 0 0 0 0 0 0 0
+ * 0 0 0 0 0 0 0
+ * 0 0 0 0 0 0 0
+ * 3 4 5 6 0 0 0
+ * 4 5 6 7 0 0 0
+ * 5 6 7 8 0 0 0
+ * 0 0 0 0 0 0 0
+ */
+
+ /*
+ * Close and release resources.
+ */
+ H5Dclose (dataset);
+ H5Sclose (dataspace);
+ H5Sclose (memspace);
+ H5Fclose (file);
+
+}
diff --git a/doc/html/Tutor/examples/h5_iterate.c b/doc/html/Tutor/examples/h5_iterate.c
new file mode 100644
index 0000000..db58183
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_iterate.c
@@ -0,0 +1,111 @@
+#include <hdf5.h>
+
+#define FILE "iterate.h5"
+#define FALSE 0
+
+/* 1-D dataset with fixed dimensions */
+#define SPACE1_NAME "Space1"
+#define SPACE1_RANK 1
+#define SPACE1_DIM1 4
+
+herr_t file_info(hid_t loc_id, const char *name, void *opdata);
+ /* Operator function */
+int
+main(void) {
+ hid_t file; /* HDF5 File IDs */
+ hid_t dataset; /* Dataset ID */
+ hid_t group; /* Group ID */
+ hid_t sid; /* Dataspace ID */
+ hid_t tid; /* Datatype ID */
+ hsize_t dims[] = {SPACE1_DIM1};
+ herr_t ret; /* Generic return value */
+
+/* Compound datatype */
+typedef struct s1_t {
+ unsigned int a;
+ unsigned int b;
+ float c;
+} s1_t;
+
+ /* Create file */
+ file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create dataspace for datasets */
+ sid = H5Screate_simple(SPACE1_RANK, dims, NULL);
+
+ /* Create a group */
+ group=H5Gcreate(file,"Group1",-1);
+
+ /* Close a group */
+ ret = H5Gclose(group);
+
+ /* Create a dataset */
+ dataset=H5Dcreate(file,"Dataset1",H5T_STD_U32LE,sid,H5P_DEFAULT);
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+
+ /* Create a datatype */
+ tid = H5Tcreate (H5T_COMPOUND, sizeof(s1_t));
+
+ /* Insert fields */
+ ret=H5Tinsert (tid, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT);
+
+ ret=H5Tinsert (tid, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT);
+
+ ret=H5Tinsert (tid, "c", HOFFSET(s1_t,c), H5T_NATIVE_FLOAT);
+
+ /* Save datatype for later */
+ ret=H5Tcommit (file, "Datatype1", tid);
+
+ /* Close datatype */
+ ret = H5Tclose(tid);
+
+ /* Iterate through the file to see members of the root group */
+
+ printf(" Objects in the root group are:\n");
+ printf("\n");
+
+ H5Giterate(file, "/", NULL, file_info, NULL);
+
+ /* Close file */
+ ret = H5Fclose(file);
+
+ return 0;
+}
+
+/*
+ * Operator function.
+ */
+herr_t file_info(hid_t loc_id, const char *name, void *opdata)
+{
+ H5G_stat_t statbuf;
+
+ /*
+ * Get type of the object and display its name and type.
+ * The name of the object is passed to this function by
+ * the Library. Some magic :-)
+ */
+ H5Gget_objinfo(loc_id, name, FALSE, &statbuf);
+ switch (statbuf.type) {
+ case H5G_GROUP:
+ printf(" Object with name %s is a group \n", name);
+ break;
+ case H5G_DATASET:
+ printf(" Object with name %s is a dataset \n", name);
+ break;
+ case H5G_TYPE:
+ printf(" Object with name %s is a named datatype \n", name);
+ break;
+ default:
+ printf(" Unable to identify an object ");
+ }
+ return 0;
+ }
+
+
+
+
+
+
+
diff --git a/doc/html/Tutor/examples/h5_mount.c b/doc/html/Tutor/examples/h5_mount.c
new file mode 100644
index 0000000..452ad6e
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_mount.c
@@ -0,0 +1,119 @@
+/*
+ * This program shows the concept of "mounting files".
+ * Program creates one file with group G in it, and another
+ * file with dataset D. Then second file is mounted in the first one
+ * under the "mounting point" G. Dataset D is accessed in the first file
+ * under name /G/D and data is printed out.
+ */
+
+#include<hdf5.h>
+
+#define FILE1 "mount1.h5"
+#define FILE2 "mount2.h5"
+
+#define RANK 2
+#define NX 4
+#define NY 5
+
+int main(void)
+{
+
+ hid_t fid1, fid2, gid; /* Files and group identifiers */
+ hid_t did, tid, sid; /* Dataset and datatype identifiers */
+
+ herr_t status;
+ hsize_t dims[] = {NX,NY}; /* Dataset dimensions */
+
+ int i, j;
+ int bm[NX][NY], bm_out[NX][NY]; /* Data buffers */
+
+ /*
+ * Initialization of buffer matrix "bm"
+ */
+ for(i =0; i<NX; i++) {
+ for(j = 0; j<NY; j++)
+ bm[i][j] = i + j;
+ }
+
+ /*
+ * Create first file and a group in it.
+ */
+ fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ gid = H5Gcreate(fid1, "/G", 0);
+
+ /*
+ * Close group and file
+ */
+ H5Gclose(gid);
+ H5Fclose(fid1);
+
+ /*
+ * Create second file and dataset "D" in it.
+ */
+ fid2 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ dims[0] = NX;
+ dims[1] = NY;
+ sid = H5Screate_simple(RANK, dims, NULL);
+ did = H5Dcreate(fid2, "D", H5T_NATIVE_INT, sid, H5P_DEFAULT);
+
+ /*
+ * Write data to the dataset.
+ */
+ status = H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, bm);
+
+ /*
+ * Close all identifiers.
+ */
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Fclose(fid2);
+
+ /*
+ * Reopen both files
+ */
+ fid1 = H5Fopen(FILE1, H5F_ACC_RDONLY, H5P_DEFAULT);
+ fid2 = H5Fopen(FILE2, H5F_ACC_RDONLY, H5P_DEFAULT);
+
+ /*
+ * Mount second file under G in the first file.
+ */
+ H5Fmount(fid1, "/G", fid2, H5P_DEFAULT);
+
+ /*
+ * Access dataset D in the first file under /G/D name.
+ */
+ did = H5Dopen(fid1,"/G/D");
+ tid = H5Dget_type(did);
+ status = H5Dread(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, bm_out);
+
+ /*
+ * Print out the data.
+ */
+ for(i=0; i<NX; i++){
+ for(j=0; j<NY; j++)
+ printf(" %d", bm_out[i][j]);
+ printf("\n");
+ }
+
+ /*
+ * Close all identifers
+ */
+ H5Tclose(tid);
+ H5Dclose(did);
+
+ /*
+ * Unmounting second file
+ */
+ H5Funmount(fid1, "/G");
+
+ /*
+ * Close both files
+ */
+ H5Fclose(fid1);
+ H5Fclose(fid2);
+
+ return 0;
+}
+
+
+
diff --git a/doc/html/Tutor/examples/h5_rdwt.c b/doc/html/Tutor/examples/h5_rdwt.c
new file mode 100644
index 0000000..e651a29
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_rdwt.c
@@ -0,0 +1,37 @@
+/*
+ * Writing and reading an existing dataset.
+ */
+
+#include <hdf5.h>
+#define FILE "dset.h5"
+
+main() {
+
+ hid_t file_id, dataset_id; /* identifiers */
+ herr_t status;
+ int i, j, dset_data[4][6];
+
+ /* Initialize the dataset. */
+ for (i = 0; i < 4; i++)
+ for (j = 0; j < 6; j++)
+ dset_data[i][j] = i * 6 + j + 1;
+
+ /* Open an existing file. */
+ file_id = H5Fopen(FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /* Open an existing dataset. */
+ dataset_id = H5Dopen(file_id, "/dset");
+
+ /* Write the dataset. */
+ status = H5Dwrite(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ dset_data);
+
+ status = H5Dread(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ dset_data);
+
+ /* Close the dataset. */
+ status = H5Dclose(dataset_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
diff --git a/doc/html/Tutor/examples/h5_read.c b/doc/html/Tutor/examples/h5_read.c
new file mode 100644
index 0000000..31cb882
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_read.c
@@ -0,0 +1,136 @@
+/*
+ * This example reads hyperslab from the SDS.h5 file
+ * created by h5_write.c program into two-dimensional
+ * plane of the three-dimensional array.
+ * Information about dataset in the SDS.h5 file is obtained.
+ */
+
+#include "hdf5.h"
+
+#define FILE "SDS.h5"
+#define DATASETNAME "IntArray"
+#define NX_SUB 3 /* hyperslab dimensions */
+#define NY_SUB 4
+#define NX 7 /* output buffer dimensions */
+#define NY 7
+#define NZ 3
+#define RANK 2
+#define RANK_OUT 3
+
+int
+main (void)
+{
+ hid_t file, dataset; /* handles */
+ hid_t datatype, dataspace;
+ hid_t memspace;
+ H5T_class_t class; /* data type class */
+ H5T_order_t order; /* data order */
+ size_t size; /*
+ * size of the data element
+ * stored in file
+ */
+ hsize_t dimsm[3]; /* memory space dimensions */
+ hsize_t dims_out[2]; /* dataset dimensions */
+ herr_t status;
+
+ int data_out[NX][NY][NZ ]; /* output buffer */
+
+ hsize_t count[2]; /* size of the hyperslab in the file */
+ hssize_t offset[2]; /* hyperslab offset in the file */
+ hsize_t count_out[3]; /* size of the hyperslab in memory */
+ hssize_t offset_out[3]; /* hyperslab offset in memory */
+ int i, j, k, status_n, rank;
+
+ for (j = 0; j < NX; j++) {
+ for (i = 0; i < NY; i++) {
+ for (k = 0; k < NZ ; k++)
+ data_out[j][i][k] = 0;
+ }
+ }
+
+ /*
+ * Open the file and the dataset.
+ */
+ file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dataset = H5Dopen(file, DATASETNAME);
+
+ /*
+ * Get datatype and dataspace handles and then query
+ * dataset class, order, size, rank and dimensions.
+ */
+ datatype = H5Dget_type(dataset); /* datatype handle */
+ class = H5Tget_class(datatype);
+ if (class == H5T_INTEGER) printf("Data set has INTEGER type \n");
+ order = H5Tget_order(datatype);
+ if (order == H5T_ORDER_LE) printf("Little endian order \n");
+
+ size = H5Tget_size(datatype);
+ printf(" Data size is %d \n", size);
+
+ dataspace = H5Dget_space(dataset); /* dataspace handle */
+ rank = H5Sget_simple_extent_ndims(dataspace);
+ status_n = H5Sget_simple_extent_dims(dataspace, dims_out, NULL);
+ printf("rank %d, dimensions %lu x %lu \n", rank,
+ (unsigned long)(dims_out[0]), (unsigned long)(dims_out[1]));
+
+ /*
+ * Define hyperslab in the dataset.
+ */
+ offset[0] = 1;
+ offset[1] = 2;
+ count[0] = NX_SUB;
+ count[1] = NY_SUB;
+ status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, NULL,
+ count, NULL);
+
+ /*
+ * Define the memory dataspace.
+ */
+ dimsm[0] = NX;
+ dimsm[1] = NY;
+ dimsm[2] = NZ ;
+ memspace = H5Screate_simple(RANK_OUT,dimsm,NULL);
+
+ /*
+ * Define memory hyperslab.
+ */
+ offset_out[0] = 3;
+ offset_out[1] = 0;
+ offset_out[2] = 0;
+ count_out[0] = NX_SUB;
+ count_out[1] = NY_SUB;
+ count_out[2] = 1;
+ status = H5Sselect_hyperslab(memspace, H5S_SELECT_SET, offset_out, NULL,
+ count_out, NULL);
+
+ /*
+ * Read data from hyperslab in the file into the hyperslab in
+ * memory and display.
+ */
+ status = H5Dread(dataset, H5T_NATIVE_INT, memspace, dataspace,
+ H5P_DEFAULT, data_out);
+ for (j = 0; j < NX; j++) {
+ for (i = 0; i < NY; i++) printf("%d ", data_out[j][i][0]);
+ printf("\n");
+ }
+ /*
+ * 0 0 0 0 0 0 0
+ * 0 0 0 0 0 0 0
+ * 0 0 0 0 0 0 0
+ * 3 4 5 6 0 0 0
+ * 4 5 6 7 0 0 0
+ * 5 6 7 8 0 0 0
+ * 0 0 0 0 0 0 0
+ */
+
+ /*
+ * Close/release resources.
+ */
+ H5Tclose(datatype);
+ H5Dclose(dataset);
+ H5Sclose(dataspace);
+ H5Sclose(memspace);
+ H5Fclose(file);
+
+ return 0;
+}
diff --git a/doc/html/Tutor/examples/h5_ref2objr.c b/doc/html/Tutor/examples/h5_ref2objr.c
new file mode 100644
index 0000000..a226778
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_ref2objr.c
@@ -0,0 +1,93 @@
+#include <stdlib.h>
+#include <hdf5.h>
+
+#define FILE1 "trefer1.h5"
+
+/* dataset with fixed dimensions */
+#define SPACE1_NAME "Space1"
+#define SPACE1_RANK 1
+#define SPACE1_DIM1 4
+
+int
+main(void)
+{
+ hid_t fid1; /* HDF5 File IDs */
+ hid_t dataset, /* Dataset ID */
+ dset2; /* Dereferenced dataset ID */
+ hid_t group; /* Group ID */
+ hid_t sid1; /* Dataspace ID */
+ hid_t tid1; /* Datatype ID */
+ hobj_ref_t *rbuf; /* buffer to read from disk */
+ int *tu32; /* temp. buffer read from disk */
+ int i; /* counting variables */
+ char read_comment[10];
+ herr_t ret; /* Generic return value */
+
+ /* Allocate read buffers */
+ rbuf = malloc(sizeof(hobj_ref_t)*SPACE1_DIM1);
+ tu32 = malloc(sizeof(int)*SPACE1_DIM1);
+
+ /* Open the file */
+ fid1 = H5Fopen(FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /* Open the dataset */
+ dataset=H5Dopen(fid1,"/Dataset3");
+
+ /* Read selection from disk */
+ ret=H5Dread(dataset,H5T_STD_REF_OBJ,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf);
+
+ /* Open dataset object */
+ dset2 = H5Rdereference(dataset,H5R_OBJECT,&rbuf[0]);
+
+ /* Check information in referenced dataset */
+ sid1 = H5Dget_space(dset2);
+
+ ret=H5Sget_simple_extent_npoints(sid1);
+
+ /* Read from disk */
+ ret=H5Dread(dset2,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,tu32);
+ printf("Dataset data : \n");
+ for (i=0; i < SPACE1_DIM1 ; i++) printf (" %d ", tu32[i]);
+ printf("\n");
+ printf("\n");
+
+ /* Close dereferenced Dataset */
+ ret = H5Dclose(dset2);
+
+ /* Open group object */
+ group = H5Rdereference(dataset,H5R_OBJECT,&rbuf[2]);
+
+ /* Get group's comment */
+ ret=H5Gget_comment(group,".",10,read_comment);
+ printf("Group comment is %s \n", read_comment);
+ printf(" \n");
+ /* Close group */
+ ret = H5Gclose(group);
+
+ /* Open datatype object */
+ tid1 = H5Rdereference(dataset,H5R_OBJECT,&rbuf[3]);
+
+ /* Verify correct datatype */
+ {
+ H5T_class_t tclass;
+
+ tclass= H5Tget_class(tid1);
+ if ((tclass == H5T_COMPOUND))
+ printf ("Number of compound datatype members is %d \n", H5Tget_nmembers(tid1));
+ printf(" \n");
+ }
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+
+ /* Close file */
+ ret = H5Fclose(fid1);
+
+ /* Free memory buffers */
+ free(rbuf);
+ free(tu32);
+ return 0;
+}
diff --git a/doc/html/Tutor/examples/h5_ref2objw.c b/doc/html/Tutor/examples/h5_ref2objw.c
new file mode 100644
index 0000000..d499f8e
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_ref2objw.c
@@ -0,0 +1,120 @@
+
+#include <hdf5.h>
+
+#define FILE1 "trefer1.h5"
+
+/* 1-D dataset with fixed dimensions */
+#define SPACE1_NAME "Space1"
+#define SPACE1_RANK 1
+#define SPACE1_DIM1 4
+
+/* 2-D dataset with fixed dimensions */
+#define SPACE2_NAME "Space2"
+#define SPACE2_RANK 2
+#define SPACE2_DIM1 10
+#define SPACE2_DIM2 10
+
+int
+main(void) {
+ hid_t fid1; /* HDF5 File IDs */
+ hid_t dataset; /* Dataset ID */
+ hid_t group; /* Group ID */
+ hid_t sid1; /* Dataspace ID */
+ hid_t tid1; /* Datatype ID */
+ hsize_t dims1[] = {SPACE1_DIM1};
+ hobj_ref_t *wbuf; /* buffer to write to disk */
+ int *tu32; /* Temporary pointer to int data */
+ int i; /* counting variables */
+ const char *write_comment="Foo!"; /* Comments for group */
+ herr_t ret; /* Generic return value */
+
+/* Compound datatype */
+typedef struct s1_t {
+ unsigned int a;
+ unsigned int b;
+ float c;
+} s1_t;
+
+ /* Allocate write buffers */
+ wbuf=(hobj_ref_t *)malloc(sizeof(hobj_ref_t)*SPACE1_DIM1);
+ tu32=malloc(sizeof(int)*SPACE1_DIM1);
+
+ /* Create file */
+ fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create dataspace for datasets */
+ sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
+
+ /* Create a group */
+ group=H5Gcreate(fid1,"Group1",-1);
+
+ /* Set group's comment */
+ ret=H5Gset_comment(group,".",write_comment);
+
+ /* Create a dataset (inside Group1) */
+ dataset=H5Dcreate(group,"Dataset1",H5T_STD_U32LE,sid1,H5P_DEFAULT);
+
+ for(i=0; i<SPACE1_DIM1; i++)
+ tu32[i] = i*3;
+
+ /* Write selection to disk */
+ ret=H5Dwrite(dataset,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,tu32);
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+
+ /* Create another dataset (inside Group1) */
+ dataset=H5Dcreate(group,"Dataset2",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+
+ /* Create a datatype to refer to */
+ tid1 = H5Tcreate (H5T_COMPOUND, sizeof(s1_t));
+
+ /* Insert fields */
+ ret=H5Tinsert (tid1, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT);
+
+ ret=H5Tinsert (tid1, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT);
+
+ ret=H5Tinsert (tid1, "c", HOFFSET(s1_t,c), H5T_NATIVE_FLOAT);
+
+ /* Save datatype for later */
+ ret=H5Tcommit (group, "Datatype1", tid1);
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+
+ /* Close group */
+ ret = H5Gclose(group);
+
+ /* Create a dataset to store references */
+ dataset=H5Dcreate(fid1,"Dataset3",H5T_STD_REF_OBJ,sid1,H5P_DEFAULT);
+
+ /* Create reference to dataset */
+ ret = H5Rcreate(&wbuf[0],fid1,"/Group1/Dataset1",H5R_OBJECT,-1);
+
+ /* Create reference to dataset */
+ ret = H5Rcreate(&wbuf[1],fid1,"/Group1/Dataset2",H5R_OBJECT,-1);
+
+ /* Create reference to group */
+ ret = H5Rcreate(&wbuf[2],fid1,"/Group1",H5R_OBJECT,-1);
+
+ /* Create reference to named datatype */
+ ret = H5Rcreate(&wbuf[3],fid1,"/Group1/Datatype1",H5R_OBJECT,-1);
+
+ /* Write selection to disk */
+ ret=H5Dwrite(dataset,H5T_STD_REF_OBJ,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf);
+
+ /* Close disk dataspace */
+ ret = H5Sclose(sid1);
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+
+ /* Close file */
+ ret = H5Fclose(fid1);
+ free(wbuf);
+ free(tu32);
+ return 0;
+}
diff --git a/doc/html/Tutor/examples/h5_ref2regr.c b/doc/html/Tutor/examples/h5_ref2regr.c
new file mode 100644
index 0000000..9f747ae
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_ref2regr.c
@@ -0,0 +1,119 @@
+#include <stdlib.h>
+#include <hdf5.h>
+
+#define FILE2 "trefer2.h5"
+#define NPOINTS 10
+
+/* 1-D dataset with fixed dimensions */
+#define SPACE1_NAME "Space1"
+#define SPACE1_RANK 1
+#define SPACE1_DIM1 4
+
+/* 2-D dataset with fixed dimensions */
+#define SPACE2_NAME "Space2"
+#define SPACE2_RANK 2
+#define SPACE2_DIM1 10
+#define SPACE2_DIM2 10
+
+int
+main(void)
+{
+ hid_t fid1; /* HDF5 File IDs */
+ hid_t dset1, /* Dataset ID */
+ dset2; /* Dereferenced dataset ID */
+ hid_t sid1, /* Dataspace ID #1 */
+ sid2; /* Dataspace ID #2 */
+ hsize_t * coords; /* Coordinate buffer */
+ hsize_t low[SPACE2_RANK]; /* Selection bounds */
+ hsize_t high[SPACE2_RANK]; /* Selection bounds */
+ hdset_reg_ref_t *rbuf; /* buffer to to read disk */
+ int *drbuf; /* Buffer for reading numeric data from disk */
+ int i, j; /* counting variables */
+ herr_t ret; /* Generic return value */
+
+ /* Output message about test being performed */
+
+ /* Allocate write & read buffers */
+ rbuf=malloc(sizeof(hdset_reg_ref_t)*SPACE1_DIM1);
+ drbuf=calloc(sizeof(int),SPACE2_DIM1*SPACE2_DIM2);
+
+ /* Open the file */
+ fid1 = H5Fopen(FILE2, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /* Open the dataset */
+ dset1=H5Dopen(fid1,"/Dataset1");
+
+ /* Read selection from disk */
+ ret=H5Dread(dset1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf);
+
+ /* Try to open objects */
+ dset2 = H5Rdereference(dset1,H5R_DATASET_REGION,&rbuf[0]);
+
+ /* Check information in referenced dataset */
+ sid1 = H5Dget_space(dset2);
+
+ ret=H5Sget_simple_extent_npoints(sid1);
+ printf(" Number of elements in the dataset is : %d\n",ret);
+
+ /* Read from disk */
+ ret=H5Dread(dset2,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,drbuf);
+
+ for(i=0; i<SPACE2_DIM1; i++) {
+ for (j=0; j<SPACE2_DIM2; j++) printf (" %d ", drbuf[i*SPACE2_DIM2+j]);
+ printf("\n"); }
+
+ /* Get the hyperslab selection */
+ sid2=H5Rget_region(dset1,H5R_DATASET_REGION,&rbuf[0]);
+
+ /* Verify correct hyperslab selected */
+ ret = H5Sget_select_npoints(sid2);
+ printf(" Number of elements in the hyperslab is : %d \n", ret);
+ ret = H5Sget_select_hyper_nblocks(sid2);
+ coords=malloc(ret*SPACE2_RANK*sizeof(hsize_t)*2); /* allocate space for the hyperslab blocks */
+ ret = H5Sget_select_hyper_blocklist(sid2,0,ret,coords);
+ printf(" Hyperslab coordinates are : \n");
+ printf (" ( %lu , %lu ) ( %lu , %lu ) \n", \
+(unsigned long)coords[0],(unsigned long)coords[1],(unsigned long)coords[2],(unsigned long)coords[3]);
+ free(coords);
+ ret = H5Sget_select_bounds(sid2,low,high);
+
+ /* Close region space */
+ ret = H5Sclose(sid2);
+
+ /* Get the element selection */
+ sid2=H5Rget_region(dset1,H5R_DATASET_REGION,&rbuf[1]);
+
+ /* Verify correct elements selected */
+ ret = H5Sget_select_elem_npoints(sid2);
+ printf(" Number of selected elements is : %d\n", ret);
+
+ /* Allocate space for the element points */
+ coords= malloc(ret*SPACE2_RANK*sizeof(hsize_t));
+ ret = H5Sget_select_elem_pointlist(sid2,0,ret,coords);
+ printf(" Coordinates of selected elements are : \n");
+ for (i=0; i<2*NPOINTS; i=i+2)
+ printf(" ( %lu , %lu ) \n", (unsigned long)coords[i],(unsigned long)coords[i+1]);
+
+ free(coords);
+ ret = H5Sget_select_bounds(sid2,low,high);
+
+ /* Close region space */
+ ret = H5Sclose(sid2);
+
+ /* Close first space */
+ ret = H5Sclose(sid1);
+
+ /* Close dereferenced Dataset */
+ ret = H5Dclose(dset2);
+
+ /* Close Dataset */
+ ret = H5Dclose(dset1);
+
+ /* Close file */
+ ret = H5Fclose(fid1);
+
+ /* Free memory buffers */
+ free(rbuf);
+ free(drbuf);
+ return 0;
+}
diff --git a/doc/html/Tutor/examples/h5_ref2regw.c b/doc/html/Tutor/examples/h5_ref2regw.c
new file mode 100644
index 0000000..5f27950
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_ref2regw.c
@@ -0,0 +1,112 @@
+#include <stdlib.h>
+#include <hdf5.h>
+
+#define FILE2 "trefer2.h5"
+#define SPACE1_NAME "Space1"
+#define SPACE1_RANK 1
+#define SPACE1_DIM1 4
+
+/* Dataset with fixed dimensions */
+#define SPACE2_NAME "Space2"
+#define SPACE2_RANK 2
+#define SPACE2_DIM1 10
+#define SPACE2_DIM2 10
+
+/* Element selection information */
+#define POINT1_NPOINTS 10
+
+int
+main(void)
+{
+ hid_t fid1; /* HDF5 File IDs */
+ hid_t dset1, /* Dataset ID */
+ dset2; /* Dereferenced dataset ID */
+ hid_t sid1, /* Dataspace ID #1 */
+ sid2; /* Dataspace ID #2 */
+ hsize_t dims1[] = {SPACE1_DIM1},
+ dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
+ hssize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
+ hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
+ hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
+ hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
+ hssize_t coord1[POINT1_NPOINTS][SPACE2_RANK];
+ /* Coordinates for point selection */
+ hdset_reg_ref_t *wbuf; /* buffer to write to disk */
+ int *dwbuf; /* Buffer for writing numeric data to disk */
+ int i; /* counting variables */
+ herr_t ret; /* Generic return value */
+
+
+ /* Allocate write & read buffers */
+ wbuf=calloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1);
+ dwbuf=malloc(sizeof(int)*SPACE2_DIM1*SPACE2_DIM2);
+
+ /* Create file */
+ fid1 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create dataspace for datasets */
+ sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
+
+ /* Create a dataset */
+ dset2=H5Dcreate(fid1,"Dataset2",H5T_STD_U8LE,sid2,H5P_DEFAULT);
+
+ for(i=0; i<SPACE2_DIM1*SPACE2_DIM2; i++)
+ dwbuf[i]=i*3;
+
+ /* Write selection to disk */
+ ret=H5Dwrite(dset2,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,dwbuf);
+
+ /* Close Dataset */
+ ret = H5Dclose(dset2);
+
+ /* Create dataspace for the reference dataset */
+ sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
+
+ /* Create a dataset */
+ dset1=H5Dcreate(fid1,"Dataset1",H5T_STD_REF_DSETREG,sid1,H5P_DEFAULT);
+
+ /* Create references */
+
+ /* Select 6x6 hyperslab for first reference */
+ start[0]=2; start[1]=2;
+ stride[0]=1; stride[1]=1;
+ count[0]=6; count[1]=6;
+ block[0]=1; block[1]=1;
+ ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
+
+ /* Store first dataset region */
+ ret = H5Rcreate(&wbuf[0],fid1,"/Dataset2",H5R_DATASET_REGION,sid2);
+
+ /* Select sequence of ten points for second reference */
+ coord1[0][0]=6; coord1[0][1]=9;
+ coord1[1][0]=2; coord1[1][1]=2;
+ coord1[2][0]=8; coord1[2][1]=4;
+ coord1[3][0]=1; coord1[3][1]=6;
+ coord1[4][0]=2; coord1[4][1]=8;
+ coord1[5][0]=3; coord1[5][1]=2;
+ coord1[6][0]=0; coord1[6][1]=4;
+ coord1[7][0]=9; coord1[7][1]=0;
+ coord1[8][0]=7; coord1[8][1]=1;
+ coord1[9][0]=3; coord1[9][1]=3;
+ ret = H5Sselect_elements(sid2,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord1);
+
+ /* Store second dataset region */
+ ret = H5Rcreate(&wbuf[1],fid1,"/Dataset2",H5R_DATASET_REGION,sid2);
+
+ /* Write selection to disk */
+ ret=H5Dwrite(dset1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf);
+
+ /* Close all objects */
+ ret = H5Sclose(sid1);
+ ret = H5Dclose(dset1);
+ ret = H5Sclose(sid2);
+
+ /* Close file */
+ ret = H5Fclose(fid1);
+
+ free(wbuf);
+ free(dwbuf);
+ return 0;
+}
+
+
diff --git a/doc/html/Tutor/examples/h5_reference.c b/doc/html/Tutor/examples/h5_reference.c
new file mode 100644
index 0000000..a69afe2
--- /dev/null
+++ b/doc/html/Tutor/examples/h5_reference.c
@@ -0,0 +1,146 @@
+ /*
+ * This program illustrates how references to the objects can be used.
+ * Program creates two datasets in the file. It also creates the third
+ * dataset, and references to the first two datasets are stored in it.
+ * Program reopens the file and reads dataset with the references.
+ * References are used to open first two datasets and read datatspace
+ * and datatype information about them.
+ *
+ */
+
+#include<hdf5.h>
+
+#define FILE "refere.h5"
+
+int
+main(void) {
+ hid_t fid; /* File, datasets, datatypes and */
+ hid_t did_a, sid_a; /* dataspaces identifiers for three */
+ hid_t did_b, tid_b, sid_b; /* datasets. */
+ hid_t did_r, tid_r, sid_r;
+ herr_t status;
+
+ hobj_ref_t *wbuf; /* buffer to write to disk */
+ hobj_ref_t *rbuf; /* buffer to read from disk */
+
+
+ hsize_t dim_r[1];
+ hsize_t dim_a[1];
+ hsize_t dim_b[2];
+
+ herr_t ret; /* return values */
+
+ /*
+ * Create a file using default properties.
+ */
+ fid = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create dataset "A" in the file.
+ */
+ dim_a[0] = 5;
+ sid_a = H5Screate_simple(1, dim_a, NULL);
+ did_a = H5Dcreate(fid, "A", H5T_NATIVE_INT, sid_a, H5P_DEFAULT);
+
+ /*
+ * Create dataset "B" in the file.
+ */
+ dim_b[0] = 2;
+ dim_b[1] = 6;
+ sid_b = H5Screate_simple(2, dim_b, NULL);
+ did_b = H5Dcreate(fid, "B", H5T_NATIVE_FLOAT, sid_b, H5P_DEFAULT);
+
+ /*
+ * Create dataset "R" to store references to the datasets "A" and "B".
+ */
+ dim_r[0] = 2;
+ sid_r = H5Screate_simple(1, dim_r, NULL);
+ tid_r = H5Tcopy(H5T_STD_REF_OBJ);
+ did_r = H5Dcreate(fid, "R", tid_r, sid_r, H5P_DEFAULT );
+
+ /*
+ * Allocate write and read buffers.
+ */
+ wbuf = malloc(sizeof(hobj_ref_t)*2);
+ rbuf = malloc(sizeof(hobj_ref_t)*2);
+
+ /*
+ * Create references to the datasets "A" and "B"
+ * and store them in the wbuf.
+ */
+ H5Rcreate(&wbuf[0], fid, "A", H5R_OBJECT, -1);
+ H5Rcreate(&wbuf[1], fid, "B", H5R_OBJECT, -1);
+
+ /*
+ * Write dataset R using default transfer properties.
+ */
+ status = H5Dwrite(did_r, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, wbuf);
+
+ /*
+ * Close all objects.
+ */
+ H5Sclose(sid_a);
+ H5Dclose(did_a);
+
+ H5Sclose(sid_b);
+ H5Dclose(did_b);
+
+ H5Tclose(tid_r);
+ H5Sclose(sid_r);
+ H5Dclose(did_r);
+
+ H5Fclose(fid);
+
+ /*
+ * Reopen the file.
+ */
+ fid = H5Fopen(FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /*
+ * Open and read dataset "R".
+ */
+ did_r = H5Dopen(fid, "R");
+ status = H5Dread(did_r, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, rbuf);
+
+ /*
+ * Open dataset A using reference to it.
+ */
+ did_a = H5Rdereference(did_r, H5R_OBJECT, &rbuf[0]);
+
+ /*
+ * Get rank of the dataset "A"
+ */
+
+ printf("\n");
+ sid_a = H5Dget_space(did_a);
+ ret = H5Sget_simple_extent_ndims(sid_a);
+
+ if(ret == 1) printf("Rank of A is %d.\n", ret);
+ printf("\n");
+
+ /*
+ * Get datatype of the dataset "B"
+ */
+ did_b = H5Rdereference(did_r, H5R_OBJECT, &rbuf[1]);
+ tid_b = H5Dget_type(did_b);
+ if(H5Tequal(tid_b, H5T_NATIVE_FLOAT))
+ printf("Datatype of B is H5T_NATIVE_FLOAT.\n");
+ printf("\n");
+
+ /*
+ * Close all objects.
+ */
+ H5Dclose(did_a);
+ H5Sclose(sid_a);
+ H5Dclose(did_b);
+ H5Tclose(tid_b);
+ H5Fclose(fid);
+
+ return 0;
+
+ }
+
+
+