[svn-r9902] Purpose:

Configuration feature

Description:
HDF5 now uses automake to generate Makefiles

Solution:
Makefile.in files are now generated from Makefile.am files.
To reconfigure (after chaning a Makefile.am or configure.in):
/bin/sh bin/reconfigure.sh

Platforms tested:
Many

9 files changed, 1531 insertions, 48 deletions

diff --git a/doc/html/Tutor/Dependencies b/doc/html/Tutor/Dependencies
deleted file mode 100644
index 3f21eb3..0000000
--- a/doc/html/Tutor/Dependencies
+++ /dev/null
@@ -1 +0,0 @@
-## There are no dependencies in this directory
diff --git a/doc/html/Tutor/Graphics/Dependencies b/doc/html/Tutor/Graphics/Dependencies
deleted file mode 100644
index e69de29..0000000
--- a/doc/html/Tutor/Graphics/Dependencies
+++ /dev/null
diff --git a/doc/html/Tutor/Graphics/Makefile.am b/doc/html/Tutor/Graphics/Makefile.am
new file mode 100644
index 0000000..6e3a60e
--- /dev/null
+++ b/doc/html/Tutor/Graphics/Makefile.am
@@ -0,0 +1,24 @@
+# HDF5 Library Doc Makefile(.in)
+#
+# Copyright (C) 1997, 2002
+#     National Center for Supercomputing Applications.
+#     All rights reserved.
+#
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+
+include $(top_srcdir)/config/commence-doc.am
+
+localdocdir = $(docdir)/hdf5/Tutor/Graphics
+
+# Public doc files (to be installed)...
+localdoc_DATA=AddInfo.gif AdvTopics.gif BLANK.gif ChunkExt.gif CompDTypes.gif  \
+         Copy.gif CreateAttr.gif CreateDset1.gif CreateDset2.gif          \
+         CreateFile.gif CreateGrp1.gif CreateGrp2.gif Examples.gif        \
+         FileOrg.gif FullTOC1.gif FullTOC2.gif Glossary.gif H5API.gif     \
+         Intro.gif IntroTopics.gif Iterate.gif MountFile.gif Quiz.gif     \
+         QuizAns.gif RdWrDataset.gif RefObject.gif RefRegion.gif          \
+         References.gif SelectElemCp.gif SelectHyp.gif TOC.gif            \
+         TOCFull.gif TOCShort.gif TitlePg.gif Utilities.gif
diff --git a/doc/html/Tutor/Graphics/Makefile.in b/doc/html/Tutor/Graphics/Makefile.in
index 90aa208..46ce6b4 100644
--- a/doc/html/Tutor/Graphics/Makefile.in
+++ b/doc/html/Tutor/Graphics/Makefile.in
@@ -1,20 +1,190 @@
-# HDF5 Library Makefile(.in)
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+# HDF5 Library Doc Makefile(.in)
+#
+# Copyright (C) 1997, 2002
+#     National Center for Supercomputing Applications.
+#     All rights reserved.
 #
-# Copyright (C) 2001 National Center for Supercomputing Applications.
-#                    All rights reserved.
 #
-# 
-top_srcdir=@top_srcdir@
-top_builddir=../../../..
-srcdir=@srcdir@
-@COMMENCE@
 
-# Subdirectories in build-order (not including `examples')
-SUBDIRS=
-DOCDIR=$(docdir)/hdf5/Tutor/Graphics
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../../../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+localdocdir = $(docdir)/hdf5/Tutor/Graphics
 
 # Public doc files (to be installed)...
-PUB_DOCS=AddInfo.gif AdvTopics.gif BLANK.gif ChunkExt.gif CompDTypes.gif  \
+localdoc_DATA = AddInfo.gif AdvTopics.gif BLANK.gif ChunkExt.gif CompDTypes.gif  \
          Copy.gif CreateAttr.gif CreateDset1.gif CreateDset2.gif          \
          CreateFile.gif CreateGrp1.gif CreateGrp2.gif Examples.gif        \
          FileOrg.gif FullTOC1.gif FullTOC2.gif Glossary.gif H5API.gif     \
@@ -23,7 +193,255 @@ PUB_DOCS=AddInfo.gif AdvTopics.gif BLANK.gif ChunkExt.gif CompDTypes.gif  \
          References.gif SelectElemCp.gif SelectHyp.gif TOC.gif            \
          TOCFull.gif TOCShort.gif TitlePg.gif Utilities.gif
 
-# Other doc files (not to be installed)...
-PRIVATE_DOCS=
+subdir = doc/html/Tutor/Graphics
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+DIST_SOURCES =
+DATA = $(localdoc_DATA)
+
+DIST_COMMON = Makefile.am Makefile.in
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence-doc.am $(top_srcdir)/config/commence.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  doc/html/Tutor/Graphics/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+localdocDATA_INSTALL = $(INSTALL_DATA)
+install-localdocDATA: $(localdoc_DATA)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(localdocdir)
+	@list='$(localdoc_DATA)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  f="`echo $$p | sed -e 's|^.*/||'`"; \
+	  echo " $(localdocDATA_INSTALL) $$d$$p $(DESTDIR)$(localdocdir)/$$f"; \
+	  $(localdocDATA_INSTALL) $$d$$p $(DESTDIR)$(localdocdir)/$$f; \
+	done
+
+uninstall-localdocDATA:
+	@$(NORMAL_UNINSTALL)
+	@list='$(localdoc_DATA)'; for p in $$list; do \
+	  f="`echo $$p | sed -e 's|^.*/||'`"; \
+	  echo " rm -f $(DESTDIR)$(localdocdir)/$$f"; \
+	  rm -f $(DESTDIR)$(localdocdir)/$$f; \
+	done
+tags: TAGS
+TAGS:
+
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../../../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(DATA)
+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(localdocdir)
+
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-am
+
+distclean-am: clean-am distclean-generic distclean-libtool
+
+dvi: dvi-am
+
+dvi-am:
+
+info: info-am
+
+info-am:
+
+install-data-am: install-localdocDATA
+
+install-exec-am:
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic mostlyclean-libtool
+
+uninstall-am: uninstall-info-am uninstall-localdocDATA
+
+.PHONY: all all-am check check-am clean clean-generic clean-libtool \
+	distclean distclean-generic distclean-libtool distdir dvi \
+	dvi-am info info-am install install-am install-data \
+	install-data-am install-exec install-exec-am install-info \
+	install-info-am install-localdocDATA install-man install-strip \
+	installcheck installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic \
+	mostlyclean-libtool uninstall uninstall-am uninstall-info-am \
+	uninstall-localdocDATA
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# Ignore most rules
+lib progs check test _test:
+	@echo "Nothing to be done"
+
+tests TAGS tags dep depend:
+	@@SETX@; for d in X $(SUBDIRS); do                                  \
+	  if test $$d != X; then                                              \
+	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
+	  fi;     
+	done
 
-@CONCLUDE@
+# In docs directory, install-doc is the same as install
+install-doc install-all:
+	$(MAKE) install
+uninstall-doc uninstall-all:
+	$(MAKE) uninstall
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/doc/html/Tutor/Makefile.am b/doc/html/Tutor/Makefile.am
new file mode 100644
index 0000000..ed7ab7a
--- /dev/null
+++ b/doc/html/Tutor/Makefile.am
@@ -0,0 +1,25 @@
+# HDF5 Library Doc Makefile(.in)
+#
+# Copyright (C) 1997, 2002
+#     National Center for Supercomputing Applications.
+#     All rights reserved.
+#
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+
+include $(top_srcdir)/config/commence-doc.am
+
+SUBDIRS=Graphics examples
+localdocdir = $(docdir)/hdf5/Tutor
+
+# Public doc files (to be installed)...
+localdoc_DATA=Contents.html ContentsAdd.html ContentsAdv.html                   \
+         ContentsFull.html ContentsIntro.html Copyright.html answers.html  \
+         api.html bighdf2sp.JPG compound.html crtatt.html crtdat.html      \
+         crtfile.html crtgrp.html crtgrpar.html crtgrpd.html extend.html   \
+         fileorg.html glossary.html img001.gif img002.gif img003.gif       \
+         img004.gif img005.gif index.html intro.html iterate.html          \
+         mount.html questions.html rdwt.html references.html reftoobj.html \
+         reftoreg.html select.html selectc.html title.html util.html
diff --git a/doc/html/Tutor/Makefile.in b/doc/html/Tutor/Makefile.in
index da54607..967eac5 100644
--- a/doc/html/Tutor/Makefile.in
+++ b/doc/html/Tutor/Makefile.in
@@ -1,20 +1,191 @@
-# HDF5 Library Makefile(.in)
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+# HDF5 Library Doc Makefile(.in)
+#
+# Copyright (C) 1997, 2002
+#     National Center for Supercomputing Applications.
+#     All rights reserved.
 #
-# Copyright (C) 2001 National Center for Supercomputing Applications.
-#                    All rights reserved.
 #
-# 
-top_srcdir=@top_srcdir@
-top_builddir=../../..
-srcdir=@srcdir@
-@COMMENCE@
 
-# Subdirectories in build-order
-SUBDIRS=Graphics examples
-DOCDIR=$(docdir)/hdf5/Tutor
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
+PARALLEL = @PARALLEL@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SIZE_T = @SIZE_T@
+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+SUBDIRS = Graphics examples
+localdocdir = $(docdir)/hdf5/Tutor
 
 # Public doc files (to be installed)...
-PUB_DOCS=Contents.html ContentsAdd.html ContentsAdv.html                   \
+localdoc_DATA = Contents.html ContentsAdd.html ContentsAdv.html                   \
          ContentsFull.html ContentsIntro.html Copyright.html answers.html  \
          api.html bighdf2sp.JPG compound.html crtatt.html crtdat.html      \
          crtfile.html crtgrp.html crtgrpar.html crtgrpd.html extend.html   \
@@ -23,7 +194,377 @@ PUB_DOCS=Contents.html ContentsAdd.html ContentsAdv.html                   \
          mount.html questions.html rdwt.html references.html reftoobj.html \
          reftoreg.html select.html selectc.html title.html util.html
 
-# Other doc files (not to be installed)...
-PRIVATE_DOCS=
+subdir = doc/html/Tutor
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+DIST_SOURCES =
+DATA = $(localdoc_DATA)
+
+
+RECURSIVE_TARGETS = info-recursive dvi-recursive install-info-recursive \
+	uninstall-info-recursive all-recursive install-data-recursive \
+	install-exec-recursive installdirs-recursive install-recursive \
+	uninstall-recursive check-recursive installcheck-recursive
+DIST_COMMON = Makefile.am Makefile.in
+DIST_SUBDIRS = $(SUBDIRS)
+all: all-recursive
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence-doc.am $(top_srcdir)/config/commence.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  doc/html/Tutor/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+localdocDATA_INSTALL = $(INSTALL_DATA)
+install-localdocDATA: $(localdoc_DATA)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(localdocdir)
+	@list='$(localdoc_DATA)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  f="`echo $$p | sed -e 's|^.*/||'`"; \
+	  echo " $(localdocDATA_INSTALL) $$d$$p $(DESTDIR)$(localdocdir)/$$f"; \
+	  $(localdocDATA_INSTALL) $$d$$p $(DESTDIR)$(localdocdir)/$$f; \
+	done
+
+uninstall-localdocDATA:
+	@$(NORMAL_UNINSTALL)
+	@list='$(localdoc_DATA)'; for p in $$list; do \
+	  f="`echo $$p | sed -e 's|^.*/||'`"; \
+	  echo " rm -f $(DESTDIR)$(localdocdir)/$$f"; \
+	  rm -f $(DESTDIR)$(localdocdir)/$$f; \
+	done
+
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run `make' without going through this Makefile.
+# To change the values of `make' variables: instead of editing Makefiles,
+# (1) if the variable is set in `config.status', edit `config.status'
+#     (which will cause the Makefiles to be regenerated when you run `make');
+# (2) otherwise, pass the desired values on the `make' command line.
+$(RECURSIVE_TARGETS):
+	@set fnord $$MAKEFLAGS; amf=$$2; \
+	dot_seen=no; \
+	target=`echo $@ | sed s/-recursive//`; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    dot_seen=yes; \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	   || case "$$amf" in *=*) exit 1;; *k*) fail=yes;; *) exit 1;; esac; \
+	done; \
+	if test "$$dot_seen" = "no"; then \
+	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
+	fi; test -z "$$fail"
+
+mostlyclean-recursive clean-recursive distclean-recursive \
+maintainer-clean-recursive:
+	@set fnord $$MAKEFLAGS; amf=$$2; \
+	dot_seen=no; \
+	case "$@" in \
+	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+	  *) list='$(SUBDIRS)' ;; \
+	esac; \
+	rev=''; for subdir in $$list; do \
+	  if test "$$subdir" = "."; then :; else \
+	    rev="$$subdir $$rev"; \
+	  fi; \
+	done; \
+	rev="$$rev ."; \
+	target=`echo $@ | sed s/-recursive//`; \
+	for subdir in $$rev; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	   || case "$$amf" in *=*) exit 1;; *k*) fail=yes;; *) exit 1;; esac; \
+	done && test -z "$$fail"
+tags-recursive:
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
+	done
+
+ETAGS = etags
+ETAGSFLAGS =
+
+tags: TAGS
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+
+TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test -f $$subdir/TAGS && tags="$$tags -i $$here/$$subdir/TAGS"; \
+	  fi; \
+	done; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(ETAGS_ARGS)$$tags$$unique" \
+	  || $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test -d $(distdir)/$$subdir \
+	    || mkdir $(distdir)/$$subdir \
+	    || exit 1; \
+	    (cd $$subdir && \
+	      $(MAKE) $(AM_MAKEFLAGS) \
+	        top_distdir="$(top_distdir)" \
+	        distdir=../$(distdir)/$$subdir \
+	        distdir) \
+	      || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-recursive
+all-am: Makefile $(DATA)
+installdirs: installdirs-recursive
+installdirs-am:
+	$(mkinstalldirs) $(DESTDIR)$(localdocdir)
+
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-recursive
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-recursive
+
+clean-am: clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-recursive
+
+distclean-am: clean-am distclean-generic distclean-libtool \
+	distclean-tags
+
+dvi: dvi-recursive
+
+dvi-am:
+
+info: info-recursive
+
+info-am:
+
+install-data-am: install-localdocDATA
+
+install-exec-am:
+
+install-info: install-info-recursive
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-recursive
+
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-recursive
+
+mostlyclean-am: mostlyclean-generic mostlyclean-libtool
+
+uninstall-am: uninstall-info-am uninstall-localdocDATA
+
+uninstall-info: uninstall-info-recursive
+
+.PHONY: $(RECURSIVE_TARGETS) GTAGS all all-am check check-am clean \
+	clean-generic clean-libtool clean-recursive distclean \
+	distclean-generic distclean-libtool distclean-recursive \
+	distclean-tags distdir dvi dvi-am dvi-recursive info info-am \
+	info-recursive install install-am install-data install-data-am \
+	install-data-recursive install-exec install-exec-am \
+	install-exec-recursive install-info install-info-am \
+	install-info-recursive install-localdocDATA install-man \
+	install-recursive install-strip installcheck installcheck-am \
+	installdirs installdirs-am installdirs-recursive \
+	maintainer-clean maintainer-clean-generic \
+	maintainer-clean-recursive mostlyclean mostlyclean-generic \
+	mostlyclean-libtool mostlyclean-recursive tags tags-recursive \
+	uninstall uninstall-am uninstall-info-am \
+	uninstall-info-recursive uninstall-localdocDATA \
+	uninstall-recursive
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# Ignore most rules
+lib progs check test _test:
+	@echo "Nothing to be done"
+
+tests TAGS tags dep depend:
+	@@SETX@; for d in X $(SUBDIRS); do                                  \
+	  if test $$d != X; then                                              \
+	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
+	  fi;     
+	done
 
-@CONCLUDE@
+# In docs directory, install-doc is the same as install
+install-doc install-all:
+	$(MAKE) install
+uninstall-doc uninstall-all:
+	$(MAKE) uninstall
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/doc/html/Tutor/examples/Dependencies b/doc/html/Tutor/examples/Dependencies
deleted file mode 100644
index e69de29..0000000
--- a/doc/html/Tutor/examples/Dependencies
+++ /dev/null
diff --git a/doc/html/Tutor/examples/Makefile.am b/doc/html/Tutor/examples/Makefile.am
new file mode 100644
index 0000000..d28abfc
--- /dev/null
+++ b/doc/html/Tutor/examples/Makefile.am
@@ -0,0 +1,38 @@
+# HDF5 Library Doc Makefile(.in)
+#
+# Copyright (C) 1997, 2002
+#     National Center for Supercomputing Applications.
+#     All rights reserved.
+#
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+
+include $(top_srcdir)/config/commence-doc.am
+
+localdocdir = $(docdir)/hdf5/Tutor/examples
+
+# Public doc files (to be installed)...
+localdoc_DATA=h5_compound.c h5_copy.c h5_crtatt.c h5_crtdat.c h5_crtfile.c      \
+         h5_crtgrp.c h5_crtgrpar.c h5_crtgrpd.c h5_extend.c h5_hyperslab.c \
+         h5_iterate.c h5_mount.c h5_rdwt.c h5_read.c h5_ref2objr.c         \
+         h5_ref2objw.c h5_ref2regr.c h5_ref2regw.c h5_reference.c
+
+nobase_localdoc_DATA=java/Compound.java java/Copy.java java/CreateAttribute.java \
+            java/CreateDataset.java java/CreateFile.java                \
+            java/CreateFileInput.java java/CreateGroup.java             \
+            java/CreateGroupAR.java java/CreateGroupDataset.java        \
+            java/DatasetRdWt.java java/HyperSlab.java java/Makefile     \
+            java/Makefile.in java/README java/readme.html               \
+            java/runCompound.sh java/runCompound.sh.in java/runCopy.sh  \
+            java/runCopy.sh.in java/runCreateAttribute.sh               \
+            java/runCreateAttribute.sh.in java/runCreateDataset.sh      \
+            java/runCreateDataset.sh.in java/runCreateFile.sh           \
+            java/runCreateFile.sh.in java/runCreateFileInput.sh         \
+            java/runCreateFileInput.sh.in java/runCreateGroup.sh        \
+            java/runCreateGroup.sh.in java/runCreateGroupAR.sh          \
+            java/runCreateGroupAR.sh.in java/runCreateGroupDataset.sh   \
+            java/runCreateGroupDataset.sh.in java/runDatasetRdWt.sh     \
+            java/runDatasetRdWt.sh.in java/runHyperSlab.sh              \
+            java/runHyperSlab.sh.in
diff --git a/doc/html/Tutor/examples/Makefile.in b/doc/html/Tutor/examples/Makefile.in
index 4dcd522..243ae98 100644
--- a/doc/html/Tutor/examples/Makefile.in
+++ b/doc/html/Tutor/examples/Makefile.in
@@ -1,26 +1,196 @@
-# HDF5 Library Makefile(.in)
+# Makefile.in generated by automake 1.6.3 from Makefile.am.
+# @configure_input@
+
+# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
+# Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+# HDF5 Library Doc Makefile(.in)
+#
+# Copyright (C) 1997, 2002
+#     National Center for Supercomputing Applications.
+#     All rights reserved.
 #
-# Copyright (C) 2001 National Center for Supercomputing Applications.
-#                    All rights reserved.
 #
-# 
-top_srcdir=@top_srcdir@
-top_builddir=../../../..
-srcdir=@srcdir@
-@COMMENCE@
 
-# Subdirectories in build-order (not including `examples')
-SUBDIRS=
-DOCDIR=$(docdir)/hdf5/Tutor/examples
-SUBDOCDIR=$(docdir)/hdf5/Tutor/examples/java
+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+SHELL = @SHELL@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+
+bindir = @bindir@
+sbindir = @sbindir@
+libexecdir = @libexecdir@
+datadir = @datadir@
+sysconfdir = @sysconfdir@
+sharedstatedir = @sharedstatedir@
+localstatedir = @localstatedir@
+libdir = @libdir@
+infodir = @infodir@
+mandir = @mandir@
+oldincludedir = /usr/include
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../../../..
+
+ACLOCAL = @ACLOCAL@
+AUTOCONF = @AUTOCONF@
+AUTOMAKE = @AUTOMAKE@
+AUTOHEADER = @AUTOHEADER@
+
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_DATA = @INSTALL_DATA@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = @program_transform_name@
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+host_alias = @host_alias@
+host_triplet = @host@
+
+EXEEXT = @EXEEXT@
+OBJEXT = @OBJEXT@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AWK = @AWK@
+BUILD_PDB2HDF = @BUILD_PDB2HDF@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CC_VERSION = @CC_VERSION@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+DEBUG_PKG = @DEBUG_PKG@
+DEFAULT_LIBS = @DEFAULT_LIBS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+F77 = @F77@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
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+FILTERS = @FILTERS@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+GASS = @GASS@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MPE = @MPE@
+OBJDUMP = @OBJDUMP@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+PACKAGE = @PACKAGE@
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+RANLIB = @RANLIB@
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+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
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+SRB = @SRB@
+SSL = @SSL@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTGASS = @TESTGASS@
+TESTPARALLEL = @TESTPARALLEL@
+TESTSRB = @TESTSRB@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+am__include = @am__include@
+am__quote = @am__quote@
+install_sh = @install_sh@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+
+localdocdir = $(docdir)/hdf5/Tutor/examples
 
 # Public doc files (to be installed)...
-PUB_DOCS=h5_compound.c h5_copy.c h5_crtatt.c h5_crtdat.c h5_crtfile.c      \
+localdoc_DATA = h5_compound.c h5_copy.c h5_crtatt.c h5_crtdat.c h5_crtfile.c      \
          h5_crtgrp.c h5_crtgrpar.c h5_crtgrpd.c h5_extend.c h5_hyperslab.c \
          h5_iterate.c h5_mount.c h5_rdwt.c h5_read.c h5_ref2objr.c         \
          h5_ref2objw.c h5_ref2regr.c h5_ref2regw.c h5_reference.c
 
-PUB_SUBDOCS=java/Compound.java java/Copy.java java/CreateAttribute.java \
+
+nobase_localdoc_DATA = java/Compound.java java/Copy.java java/CreateAttribute.java \
             java/CreateDataset.java java/CreateFile.java                \
             java/CreateFileInput.java java/CreateGroup.java             \
             java/CreateGroupAR.java java/CreateGroupDataset.java        \
@@ -38,7 +208,275 @@ PUB_SUBDOCS=java/Compound.java java/Copy.java java/CreateAttribute.java \
             java/runDatasetRdWt.sh.in java/runHyperSlab.sh              \
             java/runHyperSlab.sh.in
 
-# Other doc files (not to be installed)...
-PRIVATE_DOCS=
+subdir = doc/html/Tutor/examples
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+DIST_SOURCES =
+DATA = $(localdoc_DATA) $(nobase_localdoc_DATA)
+
+DIST_COMMON = Makefile.am Makefile.in
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  Makefile.am $(top_srcdir)/config/commence-doc.am $(top_srcdir)/config/commence.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  doc/html/Tutor/examples/Makefile
+Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+localdocDATA_INSTALL = $(INSTALL_DATA)
+install-localdocDATA: $(localdoc_DATA)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(localdocdir)
+	@list='$(localdoc_DATA)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  f="`echo $$p | sed -e 's|^.*/||'`"; \
+	  echo " $(localdocDATA_INSTALL) $$d$$p $(DESTDIR)$(localdocdir)/$$f"; \
+	  $(localdocDATA_INSTALL) $$d$$p $(DESTDIR)$(localdocdir)/$$f; \
+	done
+
+uninstall-localdocDATA:
+	@$(NORMAL_UNINSTALL)
+	@list='$(localdoc_DATA)'; for p in $$list; do \
+	  f="`echo $$p | sed -e 's|^.*/||'`"; \
+	  echo " rm -f $(DESTDIR)$(localdocdir)/$$f"; \
+	  rm -f $(DESTDIR)$(localdocdir)/$$f; \
+	done
+nobase_localdocDATA_INSTALL = $(install_sh_DATA)
+install-nobase_localdocDATA: $(nobase_localdoc_DATA)
+	@$(NORMAL_INSTALL)
+	$(mkinstalldirs) $(DESTDIR)$(localdocdir)
+	@list='$(nobase_localdoc_DATA)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  f="$$p"; \
+	  echo " $(nobase_localdocDATA_INSTALL) $$d$$p $(DESTDIR)$(localdocdir)/$$f"; \
+	  $(nobase_localdocDATA_INSTALL) $$d$$p $(DESTDIR)$(localdocdir)/$$f; \
+	done
+
+uninstall-nobase_localdocDATA:
+	@$(NORMAL_UNINSTALL)
+	@list='$(nobase_localdoc_DATA)'; for p in $$list; do \
+	  f="$$p"; \
+	  echo " rm -f $(DESTDIR)$(localdocdir)/$$f"; \
+	  rm -f $(DESTDIR)$(localdocdir)/$$f; \
+	done
+tags: TAGS
+TAGS:
+
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+top_distdir = ../../../..
+distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)
+
+distdir: $(DISTFILES)
+	@list='$(DISTFILES)'; for file in $$list; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkinstalldirs) "$(distdir)$$dir"; \
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+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(DATA)
+
+installdirs:
+	$(mkinstalldirs) $(DESTDIR)$(localdocdir) $(DESTDIR)$(localdocdir)
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+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
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+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
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+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
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+clean-am: clean-generic clean-libtool mostlyclean-am
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+uninstall-am: uninstall-info-am uninstall-localdocDATA \
+	uninstall-nobase_localdocDATA
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+.PHONY: all all-am check check-am clean clean-generic clean-libtool \
+	distclean distclean-generic distclean-libtool distdir dvi \
+	dvi-am info info-am install install-am install-data \
+	install-data-am install-exec install-exec-am install-info \
+	install-info-am install-localdocDATA install-man \
+	install-nobase_localdocDATA install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic \
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+	uninstall-localdocDATA uninstall-nobase_localdocDATA
+
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------
+
+# Ignore most rules
+lib progs check test _test:
+	@echo "Nothing to be done"
+
+tests TAGS tags dep depend:
+	@@SETX@; for d in X $(SUBDIRS); do                                  \
+	  if test $$d != X; then                                              \
+	    (cd $$d && $(MAKE) $@) || exit 1;                                 \
+	  fi;     
+	done
 
-@CONCLUDE@
+# In docs directory, install-doc is the same as install
+install-doc install-all:
+	$(MAKE) install
+uninstall-doc uninstall-all:
+	$(MAKE) uninstall
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT: