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authorFrank Baker <fbaker@hdfgroup.org>2005-07-19 17:28:56 (GMT)
committerFrank Baker <fbaker@hdfgroup.org>2005-07-19 17:28:56 (GMT)
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[svn-r11084]
Description: All HDF5 user documentation has been moved to a separate hdf5doc/ repository, managed under Subversion. With this 'cvs commit', all files are stripped from hdf5/doc/. THIS CHANGE IS APPLIED ONLY TO THE HDF5 DEVELOPMENT BRANCH, post Release 1.6.x; it is not applied to the release branches.
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-<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN">
-<html>
-<head>
- <title>DDL for HDF5</title>
-
-<!-- #BeginLibraryItem "/ed_libs/styles_UG.lbi" -->
-<!--
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the files COPYING and Copyright.html. COPYING can be found at the root *
- * of the source code distribution tree; Copyright.html can be found at the *
- * root level of an installed copy of the electronic HDF5 document set and *
- * is linked from the top-level documents page. It can also be found at *
- * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
- * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- -->
-
-<link href="ed_styles/UGelect.css" rel="stylesheet" type="text/css">
-<!-- #EndLibraryItem --></head>
-
-<body bgcolor="#FFFFFF">
-
-
-<!-- #BeginLibraryItem "/ed_libs/NavBar_UG.lbi" --><hr>
-<center>
-<table border=0 width=98%>
-<tr><td valign=top align=left>
- <a href="index.html">HDF5 documents and links</a>&nbsp;<br>
- <a href="H5.intro.html">Introduction to HDF5</a>&nbsp;<br>
- <a href="RM_H5Front.html">HDF5 Reference Manual</a>&nbsp;<br>
- <a href="http://hdf.ncsa.uiuc.edu/HDF5/doc/UG/index.html">HDF5 User's Guide for Release 1.6</a>&nbsp;<br>
- <!--
- <a href="Glossary.html">Glossary</a><br>
- -->
-</td>
-<td valign=top align=right>
- And in this document, the
- <a href="H5.user.html"><strong>HDF5 User's Guide from Release 1.4.5:</strong></a>&nbsp;&nbsp;&nbsp;&nbsp;
- <br>
- <a href="Files.html">Files</a>&nbsp;&nbsp;
- <a href="Datasets.html">Datasets</a>&nbsp;&nbsp;
- <a href="Datatypes.html">Datatypes</a>&nbsp;&nbsp;
- <a href="Dataspaces.html">Dataspaces</a>&nbsp;&nbsp;
- <a href="Groups.html">Groups</a>&nbsp;&nbsp;
- <br>
- <a href="References.html">References</a>&nbsp;&nbsp;
- <a href="Attributes.html">Attributes</a>&nbsp;&nbsp;
- <a href="Properties.html">Property Lists</a>&nbsp;&nbsp;
- <a href="Errors.html">Error Handling</a>&nbsp;&nbsp;
- <br>
- <a href="Filters.html">Filters</a>&nbsp;&nbsp;
- <a href="Caching.html">Caching</a>&nbsp;&nbsp;
- <a href="Chunking.html">Chunking</a>&nbsp;&nbsp;
- <a href="MountingFiles.html">Mounting Files</a>&nbsp;&nbsp;
- <br>
- <a href="Performance.html">Performance</a>&nbsp;&nbsp;
- <a href="Debugging.html">Debugging</a>&nbsp;&nbsp;
- <a href="Environment.html">Environment</a>&nbsp;&nbsp;
- <a href="ddl.html">DDL</a>&nbsp;&nbsp;
-</td></tr>
-</table>
-</center>
-<hr>
-<!-- #EndLibraryItem --><h1>DDL in BNF for HDF5</h1>
-
-
-<h2>1. Introduction</h2>
-
-This document contains the data description language (DDL) for an HDF5 file.
-The description is in Backus-Naur Form.
-
-<h2>2. Explanation of Symbols</h2>
-
-This section contains a brief explanation of the symbols used in the DDL.
-
-<PRE>
- ::= defined as
- &lt;tname&gt; a token with the name tname
- &lt;a&gt; | &lt;b&gt; one of &lt;a&gt; or &lt;b&gt;
- &lt;a&gt;<FONT SIZE=1.7>opt</FONT> zero or one occurrence of &lt;a&gt;
- &lt;a&gt;* zero or more occurrence of &lt;a&gt;
- &lt;a&gt;+ one or more occurrence of &lt;a&gt;
- [0-9] an element in the range between 0 and 9
- `[' the token within the quotes (used for special characters)
- TBD To Be Decided
-</pre>
-
-<h2>3. The DDL</h2>
-
-<dir>
-<pre>
-&lt;file&gt; ::= HDF5 &lt;file_name&gt; { &lt;file_super_block&gt;<FONT SIZE=1.7>opt</FONT> &lt;root_group&gt; }
-
-&lt;file_name&gt; ::= &lt;identifier&gt;
-
-&lt;file_super_block&gt; ::= BOOT_BLOCK { &lt;super_block_content&gt; }
-
-&lt;super_block_content&gt; ::= TBD
-
-&lt;root_group&gt; ::= GROUP "/" {
- &lt;unamed_datatype&gt;*
- &lt;object_id&gt;<FONT SIZE=1.7>opt</FONT>
- &lt;group_comment&gt;<FONT SIZE=1.7>opt</FONT>
- &lt;group_attribute&gt;*
- &lt;group_member&gt;*
- }
-
-&lt;datatype&gt; ::= &lt;atomic_type&gt; | &lt;compound_type&gt; | &lt;variable_length_type&gt; | &lt;array_type&gt;
-
-&lt;unamed_datatype&gt; ::= DATATYPE &lt;unamed_type_name&gt; { &lt;datatype&gt; }
-
-&lt;unamed_type_name&gt; ::= the assigned name for unamed type is in the form of
- #oid, where oid is the object id of the type
-
-&lt;atomic_type&gt; ::= &lt;integer&gt; | &lt;float&gt; | &lt;time&gt; | &lt;string&gt; |
- &lt;bitfield&gt; | &lt;opaque&gt; | &lt;reference&gt; | &lt;enum&gt;
-
-&lt;integer&gt; ::= H5T_STD_I8BE | H5T_STD_I8LE |
- H5T_STD_I16BE | H5T_STD_I16LE |
- H5T_STD_I32BE | H5T_STD_I32LE |
- H5T_STD_I64BE | H5T_STD_I64LE |
- H5T_STD_U8BE | H5T_STD_U8LE |
- H5T_STD_U16BE | H5T_STD_U16LE |
- H5T_STD_U32BE | H5T_STD_U32LE |
- H5T_STD_U64BE | H5T_STD_U64LE |
- H5T_NATIVE_CHAR | H5T_NATIVE_UCHAR |
- H5T_NATIVE_SHORT | H5T_NATIVE_USHORT |
- H5T_NATIVE_INT | H5T_NATIVE_UINT |
- H5T_NATIVE_LONG | H5T_NATIVE_ULONG |
- H5T_NATIVE_LLONG | H5T_NATIVE_ULLONG
-
-&lt;float&gt; ::= H5T_IEEE_F32BE | H5T_IEEE_F32LE |
- H5T_IEEE_F64BE | H5T_IEEE_F64LE |
- H5T_NATIVE_FLOAT | H5T_NATIVE_DOUBLE |
- H5T_NATIVE_LDOUBLE
-
-&lt;time&gt; ::= TBD
-
-&lt;string&gt; ::= H5T_STRING { STRSIZE &lt;strsize&gt; ;
- STRPAD &lt;strpad&gt; ;
- CSET &lt;cset&gt; ;
- CTYPE &lt;ctype&gt; ; }
-
-&lt;strsize&gt; ::= &lt;int_value&gt;
-
-&lt;strpad&gt; ::= H5T_STR_NULLTERM | H5T_STR_NULLPAD | H5T_STR_SPACEPAD
-
-&lt;cset&gt; ::= H5T_CSET_ASCII
-
-&lt;ctype&gt; ::= H5T_C_S1 | H5T_FORTRAN_S1
-
-&lt;bitfield&gt; ::= TBD
-
-&lt;opaque&gt; ::= H5T_OPAQUE { &lt;identifier&gt; }
-
-&lt;reference&gt; ::= H5T_REFERENCE { &lt;ref_type&gt; }
-
-&lt;ref_type&gt; ::= H5T_STD_REF_OBJECT | H5T_STD_REF_DSETREG
-
-&lt;compound_type&gt; ::= H5T_COMPOUND { &lt;member_type_def&gt;+ }
-
-&lt;member_type_def&gt; ::= &lt;datatype&gt; &lt;field_name&gt; ;
-
-&lt;field_name&gt; ::= &lt;identifier&gt;
-
-&lt;variable_length_type&gt; ::= H5T_VLEN { &lt;datatype&gt; }
-
-&lt;array_type&gt; ::= H5T_ARRAY { &lt;dim_sizes&gt; &lt;datatype&gt; }
-
-&lt;dim_sizes&gt; ::= `['&lt;dimsize&gt;`]' | `['&lt;dimsize&gt;`]'&lt;dim_sizes&gt;
-
-&lt;dimsize&gt; ::= &lt;int_value&gt;
-
-&lt;attribute&gt; ::= ATTRIBUTE &lt;attr_name&gt; { &lt;dataset_type&gt;
- &lt;dataset_space&gt;
- &lt;data&gt;<FONT SIZE=1.7>opt</FONT> }
-
-&lt;attr_name&gt; ::= &lt;identifier&gt;
-
-&lt;dataset_type&gt; ::= DATATYPE &lt;path_name&gt; | &lt;datatype&gt;
-
-&lt;enum&gt; ::= H5T_ENUM { &lt;enum_base_type&gt; &lt;enum_def&gt;+ }
-
-&lt;enum_base_type&gt; ::= &lt;integer&gt;
-// Currently enums can only hold integer type data, but they may be expanded
-// in the future to hold any datatype
-
-&lt;enum_def&gt; ::= &lt;enum_symbol&gt; &lt;enum_val&gt;;
-
-&lt;enum_symbol&gt; ::= &lt;identifier&gt;
-
-&lt;enum_val&gt; ::= &lt;int_value&gt;
-
-&lt;path_name&gt; ::= &lt;path_part&gt;+
-
-&lt;path_part&gt; ::= /&lt;identifier&gt;
-
-&lt;dataspace&gt; ::= &lt;scalar_space&gt; | &lt;simple_space&gt; | &lt;complex_space&gt;
-
-&lt;scalar_space&gt; ::= SCALAR
-
-&lt;simple_space&gt; ::= SIMPLE { &lt;current_dims&gt; / &lt;max_dims&gt; }
-
-&lt;complex_space&gt; ::= COMPLEX { &lt;complex_space_definition&gt; }
-
-&lt;dataset_space&gt; ::= DATASPACE &lt;path_name&gt; | &lt;dataspace&gt;
-
-&lt;current_dims&gt; ::= &lt;dims&gt;
-
-&lt;max_dims&gt; ::= `(' &lt;max_dim_list&gt; `)'
-
-&lt;max_dim_list&gt; ::= &lt;max_dim&gt; | &lt;max_dim&gt;, &lt;max_dim_list&gt;
-
-&lt;max_dim&gt; ::= &lt;int_value&gt; | H5S_UNLIMITED
-
-&lt;complex_space_definition&gt; ::= TBD
-
-&lt;data&gt; ::= DATA { &lt;scalar_space_data&gt; | &lt;simple_space_data&gt; | &lt;complex_space_data&gt; } | &lt;subset&gt;
-
-&lt;scalar_space_data&gt; ::= &lt;any_element&gt;
-
-&lt;any_element&gt; ::= &lt;atomic_element&gt; | &lt;compound_element&gt; |
- &lt;variable_length_element&gt; | &lt;array_element&gt;
-
-&lt;any_data_seq&gt; ::= &lt;any_element&gt; | &lt;any_element&gt;, &lt;any_data_seq&gt;
-
-&lt;atomic_element&gt; :: = &lt;integer_data&gt; | &lt;float_data&gt; | &lt;time_data&gt; |
- &lt;string_data&gt; | &lt;bitfield_data&gt; | &lt;opaque_data&gt; |
- &lt;enum_data&gt; | &lt;reference_data&gt;
-
-&lt;subset&gt; ::= SUBSET { &lt;start&gt;;
- &lt;stride&gt;;
- &lt;count&gt;;
- &lt;block&gt;;
- DATA { &lt;simple_space_data&gt; }
- }
-
-&lt;start&gt; ::= START (&lt;coor_list&gt;)
-
-&lt;stride&gt; ::= STRIDE (&lt;pos_list&gt;)
-
-&lt;count&gt; ::= COUNT (&lt;coor_list&gt;)
-
-&lt;block&gt; ::= BLOCK (&lt;coor_list&gt;)
-
-&lt;coor_list&gt; ::= &lt;int_value&gt;, &lt;coor_list&gt; | &lt;int_value&gt;
-
-&lt;integer_data&gt; ::= &lt;int_value&gt;
-
-&lt;float_data&gt; ::= a floating point number
-
-&lt;time_data&gt; ::= TBD
-
-&lt;string_data&gt; ::= a string
-// A string is enclosed in double quotes.
-// If a string is displayed on more than one line, string concatenate
-// operator '//'is used.
-
-&lt;bitfield_data&gt; ::= TBD
-
-&lt;opaque_data&gt; ::= TBD
-
-&lt;enum_data&gt; ::= &lt;enum_symbol&gt;
-
-&lt;reference_data&gt; ::= &lt;object_ref_data&gt; | &lt;data_region_data&gt; | NULL
-
-&lt;object_ref_data&gt; ::= &lt;object_type&gt; &lt;object_num&gt;
-
-&lt;object_type&gt; ::= DATASET | GROUP | DATATYPE
-
-&lt;object_id&gt; ::= OBJECTID { &lt;object_num&gt; }
-
-&lt;object_num&gt; ::= &lt;int_value&gt;:&lt;int_value&gt; | &lt;int_value&gt;
-
-&lt;data_region_data&gt; ::= H5T_STD_REF_DSETREG &lt;object_num&gt; { &lt;data_region_data_list&gt; }
-
-&lt;data_region_data_list&gt; ::= &lt;data_region_data_info&gt;, &lt;data_region_data_list&gt; | &lt;data_region_data_info&gt;
-
-&lt;data_region_data_info&gt; ::= &lt;region_info&gt; | &lt;point_info&gt;
-
-&lt;region_info&gt; ::= (&lt;region_vals&gt;)
-
-&lt;region_vals&gt; ::= &lt;lower_bound&gt;:&lt;upper_bound&gt;, &lt;region_vals&gt; | &lt;lower_bound&gt;:&lt;upper_bound&gt;
-
-&lt;lower_bound&gt; ::= &lt;int_value&gt;
-
-&lt;upper_bound&gt; ::= &lt;int_value&gt;
-
-&lt;point_info&gt; ::= (&lt;point_vals&gt;)
-
-&lt;point_vals&gt; ::= &lt;int_value&gt; | &lt;int_value&gt;, &lt;point_vals&gt;
-
-&lt;compound_element&gt; ::= { &lt;any_data_seq&gt; }
-
-&lt;atomic_simple_data&gt; :: = &lt;atomic_element&gt;, &lt;atomic_simple_data&gt; | &lt;atomic_element&gt;
-
-&lt;simple_space_data&gt; :: = &lt;any_data_seq&gt;
-
-&lt;variable_length_element&gt; ::= ( &lt;any_data_seq&gt; )
-
-&lt;array_element&gt; ::= `[' &lt;any_data_seq&gt; `]'
-
-&lt;complex_space_data&gt; ::= TBD
-
-&lt;named_datatype&gt; ::= DATATYPE &lt;type_name&gt; { &lt;datatype&gt; }
-
-&lt;type_name&gt; ::= &lt;identifier&gt;
-
-&lt;named_dataspace&gt; ::= TBD
-
-&lt;hardlink&gt; ::= HARDLINK &lt;path_name&gt;
-
-&lt;group&gt; ::= GROUP &lt;group_name&gt; { &lt;hardlink&gt; | &lt;group_info&gt; }
-
-&lt;group_comment&gt; ::= COMMENT &lt;string_data&gt;
-
-&lt;group_name&gt; ::= &lt;identifier&gt;
-
-&lt;group_info&gt; ::= &lt;object_id&gt;<FONT SIZE=1.7>opt</FONT> &lt;group_comment&gt;<FONT SIZE=1.7>opt</FONT> &lt;group_attribute&gt;* &lt;group_member&gt;*
-
-&lt;group_attribute&gt; ::= &lt;attribute&gt;
-
-&lt;group_member&gt; ::= &lt;named_datatype&gt; | &lt;named_dataspace&gt; | &lt;group&gt; |
- &lt;dataset&gt; | &lt;softlink&gt;
-
-&lt;dataset&gt; ::= DATASET &lt;dataset_name&gt; { &lt;hardlink&gt; | &lt;dataset_info&gt; }
-
-&lt;dataset_info&gt; ::= &lt;dataset_type&gt; &lt;dataset_space&gt; &lt;storagelayout&gt;<FONT SIZE=1.7>opt</FONT>
- &lt;compression&gt;<FONT SIZE=1.7>opt</FONT> &lt;dataset_attribute&gt;* &lt;object_id&gt;<FONT SIZE=1.7>opt</FONT>
- &lt;data&gt;<FONT SIZE=1.7>opt</FONT>
-// Tokens above can be in any order as long as &lt;data&gt; is
-// after &lt;dataset_type&gt; and &lt;dataset_space&gt;.
-
-&lt;dataset_name&gt; ::= &lt;identifier&gt;
-
-&lt;storagelayout&gt; :: = STORAGELAYOUT &lt;contiguous_layout&gt; |
- STORAGELAYOUT &lt;chunked_layout&gt; |
- STORAGELAYOUT &lt;compact_layout&gt; |
- STORAGELAYOUT &lt;external_layout&gt;
-
-&lt;contiguous_layout&gt; ::= {CONTIGUOUS} // default
-
-&lt;chunked_layout&gt; ::= {CHUNKED &lt;dims&gt; }
-
-&lt;dims&gt; ::= (&lt;dims_values&gt;)
-
-&lt;dims_values&gt; ::= &lt;int_value&gt; | &lt;int_value&gt;, &lt;dims_values&gt;
-
-&lt;compact_layout&gt; ::= TBD
-
-&lt;external_layout&gt; ::= {EXTERNAL &lt;external_file&gt;+ }
-
-&lt;external_file&gt; ::= (&lt;file_name&gt; &lt;offset&gt; &lt;size&gt;)
-
-&lt;offset&gt; ::= &lt;int_value&gt;
-
-&lt;size&gt; ::= &lt;int_value&gt;
-
-&lt;compression&gt; :: = COMPRESSION { TBD }
-
-&lt;dataset_attribute&gt; ::= &lt;attribute&gt;
-
-&lt;softlink&gt; ::= SOFTLINK &lt;softlink_name&gt; { LINKTARGET &lt;target&gt; }
-
-&lt;softlink_name&gt; ::= &lt;identifier&gt;
-
-&lt;target&gt; ::= &lt;identifier&gt;
-
-&lt;identifier&gt; ::= a string
-// character '/' should be used with care.
-
-&lt;pos_list&gt; ::= &lt;pos_int&gt;, &lt;pos_list&gt; | &lt;pos_int&gt;
-
-&lt;int_value&gt; ::= 0 | &lt;pos_int&gt;
-
-&lt;pos_int&gt; ::= [1-9][0-9]*
-
-</PRE>
-</DIR>
-
-
-<H2>4. An Example of an HDF5 File in DDL</H2>
-
-<DIR>
-<PRE>
-HDF5 "example.h5" {
-GROUP "/" {
- ATTRIBUTE "attr1" {
- DATATYPE H5T_STRING {
- STRSIZE 17;
- STRPAD H5T_STR_NULLTERM;
- CSET H5T_CSET_ASCII;
- CTYPE H5T_C_S1;
- }
- DATASPACE SCALAR
- DATA {
- "string attribute"
- }
- }
- DATASET "dset1" {
- DATATYPE H5T_STD_I32BE
- DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
- DATA {
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
- 0, 1, 2, 3, 4, 5, 6, 7, 8, 9
- }
- }
- DATASET "dset2" {
- DATATYPE H5T_COMPOUND {
- H5T_STD_I32BE "a";
- H5T_IEEE_F32BE "b";
- H5T_IEEE_F64BE "c";
- }
- DATASPACE SIMPLE { ( 5 ) / ( 5 ) }
- DATA {
- {
- 1,
- 0.1,
- 0.01
- },
- {
- 2,
- 0.2,
- 0.02
- },
- {
- 3,
- 0.3,
- 0.03
- },
- {
- 4,
- 0.4,
- 0.04
- },
- {
- 5,
- 0.5,
- 0.05
- }
- }
- }
- GROUP "group1" {
- COMMENT "This is a comment for group1";
- DATASET "dset3" {
- DATATYPE "/type1"
- DATASPACE SIMPLE { ( 5 ) / ( 5 ) }
- DATA {
- {
- [ 0, 1, 2, 3 ],
- [ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1,
- 0.2, 0.2, 0.2, 0.2, 0.2, 0.2,
- 0.3, 0.3, 0.3, 0.3, 0.3, 0.3,
- 0.4, 0.4, 0.4, 0.4, 0.4, 0.4,
- 0.5, 0.5, 0.5, 0.5, 0.5, 0.5 ]
- },
- {
- [ 0, 1, 2, 3 ],
- [ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1,
- 0.2, 0.2, 0.2, 0.2, 0.2, 0.2,
- 0.3, 0.3, 0.3, 0.3, 0.3, 0.3,
- 0.4, 0.4, 0.4, 0.4, 0.4, 0.4,
- 0.5, 0.5, 0.5, 0.5, 0.5, 0.5 ]
- },
- {
- [ 0, 1, 2, 3 ],
- [ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1,
- 0.2, 0.2, 0.2, 0.2, 0.2, 0.2,
- 0.3, 0.3, 0.3, 0.3, 0.3, 0.3,
- 0.4, 0.4, 0.4, 0.4, 0.4, 0.4,
- 0.5, 0.5, 0.5, 0.5, 0.5, 0.5 ]
- },
- {
- [ 0, 1, 2, 3 ],
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- GROUP "group2" {
- HARDLINK "/group1"
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- LINKTARGET "somevalue"
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- H5T_ARRAY { [4] H5T_STD_I32BE } "a";
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