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authorRuey-Hsia Li <rli@ncsa.uiuc.edu>1998-07-14 19:00:46 (GMT)
committerRuey-Hsia Li <rli@ncsa.uiuc.edu>1998-07-14 19:00:46 (GMT)
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[svn-r486] DDL description
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+<html>
+
+<head>
+<TITLE>DDL for HDF5</TITLE>
+</head>
+
+<body>
+
+<B> DDL in BNF </B> <br>
+
+<P>
+The following describes the data description language for HDF5 file.
+The description is in Backus-Naur Form. A quick explanation
+of the some symbols used.
+
+<PRE>
+ ::= defined as
+ &lt;tname&gt; a token with the name tname
+ &lt;a&gt; | &lt;b&gt; one of &lt;a&gt; or &lt;b&gt;
+ &lt;a&gt;<FONT SIZE=1.7>opt</FONT> zero or one occurrence of &lt;a&gt;
+ &lt;a&gt;* zero or more occurrence of &lt;a&gt;
+ &lt;a&gt;+ one or more occurrence of &lt;a&gt;
+ TBD To Be Decided
+
+
+&lt;file&gt; ::= hdf5 "&lt;file_name&gt;" { &lt;file_boot_block&gt;<FONT SIZE=1.7>opt</FONT> &lt;root_group&gt; }
+
+&lt;file_name&gt; ::= &lt;identifier&gt;
+
+&lt;file_boot_block&gt; ::= boot_block { &lt;boot_block_content&gt; }
+
+&lt;boot_block_content&gt; ::= TBD
+
+&lt;root_group&gt; ::= group "/" { &lt;group_attribute&gt;* &lt;group_member&gt;* }
+// Attributes and members can be in any order.
+
+&lt;group_attribute&gt; ::= &lt;attribute&gt;
+
+&lt;attribute&gt; ::= attribute "attr_name" { &lt;datatype&gt;
+ &lt;dataspace&gt;
+ &lt;data&gt;<FONT SIZE=1.7>opt</FONT> }
+// &lt;datatype&gt;, &lt;dataspace&gt; and &lt;data&gt; can be in any order
+// as long as &lt;data&gt; comes the last.
+
+&lt;attr_name&gt; ::= &lt;identifier&gt;
+
+&lt;datatype&gt; ::= datatype "&lt;datatype_name&gt;" ; | // shared data type
+ datatype { &lt;scalar_datatype&gt; } ; |
+ datatype { &lt;dt_definition&gt;+ } ;
+
+&lt;datatype_name&gt; ::= &lt;identifier&gt;
+
+&lt;scalar_datatype&gt; ::= int8 | uint8 | ... // data types supported by HDF5
+
+&lt;dt_definition&gt; ::= "&lt;datatype_name&gt;" &lt;field_name&gt; ; | &lt;scalar_datatype&gt; &lt;field_name&gt; ;
+
+&lt;field_name&gt; ::= one or more field names separated by ","
+
+&lt;dataspace&gt; ::= dataspace "&lt;dataspace_name&gt;" ; |
+ dataspace {array &lt;current_dims&gt; &lt;max_dims&gt;} ; |
+ dataspace {other &lt;ds_definition&gt;+ } ;
+
+&lt;dataspace_name&gt; ::= &lt;identifier&gt;
+
+&lt;current_dims&gt; ::= a list of integers represented of the form ( , , .. , )
+
+&lt;max_dims&gt; ::= a list of integers or H5S_UNLIMITED represented of the form ( , , .. , )
+
+&lt;ds_definition&gt; ::= TBD
+
+&lt;data&gt; ::= data {TBD} ;
+
+&lt;group_member&gt; ::= &lt;named_datatype&gt; | &lt;named_dataspace&gt; | &lt;group&gt; | &lt;dataset&gt; | &lt;link&gt;
+
+&lt;named_datatype&gt; ::= datatype "&lt;datatype_name&gt;" { &lt;scalar_datatype&gt; } |
+ datatype "&lt;datatype_name&gt;" { &lt;dt_definition&gt;+ }
+
+&lt;named_dataspace&gt; ::= dataspace "&lt;dataspace_name&gt;" {array &lt;current_dims&gt; &lt;max_dims&gt; } |
+ dataspace "&lt;dataspace_name&gt;" { other &lt;ds_definition&gt;+ }
+
+&lt;group&gt; ::= group "&lt;group_name&gt;" { &lt;group_attribute&gt;* &lt;group_member&gt;* }
+// Attributes and members can be in any order.
+
+&lt;group_name&gt; ::= &lt;identifier&gt;
+
+&lt;dataset&gt; ::= dataset "&lt;dataset_name&gt;" { &lt;datatype&gt;
+ &lt;dataspace&gt;
+ &lt;storagelayout&gt;<FONT SIZE=1.7>opt</FONT>
+ &lt;compression&gt;<FONT SIZE=1.7>opt</FONT>
+ &lt;dataset_attribute&gt;*
+ &lt;data&gt;<FONT SIZE=1.7>opt</FONT> }
+// Any order is ok as long as &lt;data&gt; and &lt;dataset_attribute&gt; are
+// after &lt;datatype&gt; and &lt;dataspace&gt;.
+
+&lt;dataset_name&gt; ::= &lt;identifier&gt;
+
+&lt;storagelayout&gt; :: = storagelayout &lt;contiguous_layout&gt; ; |
+ storagelayout &lt;chunked_layout&gt; ; |
+ storagelayout &lt;compact_layout&gt; ; |
+ storagelayout &lt;external_layout&gt; ;
+
+&lt;contiguous_layout&gt; ::= {contiguous} // default
+
+&lt;chunked_layout&gt; ::= {chunked &lt;dims&gt; }
+
+&lt;dims&gt; ::= a list of integers represented of the form ( , , .. , )
+
+&lt;compact_layout&gt; ::= TBD // not implemented yet
+
+&lt;external_layout&gt; ::= {external &lt;external_file&gt;+ }
+
+&lt;external_file&gt; ::= (&lt;file_name&gt; &lt;offset&gt; &lt;size&gt;)
+
+&lt;offset&gt; ::= an integer
+
+&lt;size&gt; ::= an integer
+
+&lt;compression&gt; :: = compression { TBD } ; //algorithm name and properties?
+
+&lt;dataset_attribute&gt; ::= &lt;attribute&gt; ;
+
+&lt;link&gt; ::= &lt;hardlink&gt; | &lt;softlink&gt;
+
+&lt;hardlink&gt; ::= hardlink "&lt;hardlink_name&gt;" { linktarget "&lt;target&gt;"; }
+
+&lt;hardlink_name&gt; ::= &lt;identifier&gt;
+
+&lt;target&gt; ::= &lt;identifier&gt;
+
+&lt;softlink&gt; ::= softlink "&lt;softlink_name&gt;" { linktarget "&lt;target&gt;"; }
+
+&lt;softlink_name&gt; ::= &lt;identifier&gt;
+
+&lt;identifier&gt; ::= string
+// character "/" should be used with care.
+// &lt;dataset_name&gt; cannot contain "/", for example.
+
+</PRE>
+<HR>
+<B> An example of HDF5 File in DDL </B>
+<PRE>
+
+Consider an HDF5 file, example.h5, with the following structure:
+
+ /
+
+ / | \
+ group1 group3 dataset3
+ / \ | ^
+ group2 dataset2 hardlink --|
+ / \ ^
+ dataset1 softlink |
+ |------|
+
+
+hdf5 "example" {
+
+group "/" {
+
+ datatype "shared_datatype1" { // named data type
+ char name[20], address[40];
+ int32 id;
+ }
+
+ datatype "shared_datatype2" {
+ "shared_datatype1" rec[100];
+ float32 total;
+ }
+
+ dataspace "shared_dataspace1" { array (1000) (1000)} // named data space
+
+
+
+ attribute "group_attribute1" { //group attribute
+ datatype {int32};
+ dataspace "shared_dataspace1";
+ }
+
+ attribute "group_attribute2" {
+ datatype {int32};
+ dataspace {array (3,5) (3,5)} ;
+ data {(0,0,0,0,0) (1,1,1,1,1) (2,2,2,2,2)};
+ }
+
+
+ group "group1" {
+
+ attribute "group1_attribute" {
+ datatype {char};
+ dataspace {array (100) (200)};
+ data {("attribute_of_group_1")};
+ }
+
+ group "group2" {
+
+ datatype "shared_datatype3" {
+ int8 z;
+ int32 x;
+ }
+
+ dataset "dataset1" {
+ dataspace "shared_dataspace1";
+ datatype "shared_datatype3";
+ attribute "dataset1_attr" {
+ datatype {char};
+ dataspace {array (10) (10)};
+ data {("data1")};
+ };
+ }
+
+
+ softlink "sl" {
+ linktarget "/group1/dataset2";
+ }
+ }
+
+ dataset "dataset2" {
+ datatype {int8};
+ dataspace {array (2,5) (unlimited, 5)};
+ data {(0,0,0,0,0) (0,0,0,0,0)};
+ }
+ }
+
+ group "group3" {
+ hardlink "hl" {
+ linktarget "/dataset3" ;
+ }
+ }
+
+
+ dataset "dataset3" {
+ datatype { float32 };
+ dataspace {array (1000,1000) (1000,1000) };
+ storagelayout {chunked (250,1000)};
+ }
+
+} // root group
+
+}
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