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authorHDF Admin <hdfadmin@ncsa.uiuc.edu>2003-08-04 01:57:07 (GMT)
committerHDF Admin <hdfadmin@ncsa.uiuc.edu>2003-08-04 01:57:07 (GMT)
commiteb23557dee905c1b07fa194cb9e3528dff1239bb (patch)
tree07ba841e4c38ce1c720193af67fd7fd8294cc395 /doc
parenta880422749bec838c7912875332a4e09e48af34d (diff)
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[svn-r7281] Snapshot version 1.6 release 0 (post0)
Diffstat (limited to 'doc')
-rw-r--r--doc/html/ADGuide/HISTORY.txt556
-rw-r--r--doc/html/ADGuide/RELEASE.txt303
2 files changed, 596 insertions, 263 deletions
diff --git a/doc/html/ADGuide/HISTORY.txt b/doc/html/ADGuide/HISTORY.txt
index b6f2585..d40b39d 100644
--- a/doc/html/ADGuide/HISTORY.txt
+++ b/doc/html/ADGuide/HISTORY.txt
@@ -3,7 +3,7 @@ HDF5 HISTORY
This file contains history of the HDF5 libraries releases
CONTENTS
-
+14. Release Information for hdf5-1.6.0
13. Release Information for hdf5-1.4.5
12. Release Information for hdf5-1.4.4
11. Release Information for hdf5-1.4.3
@@ -21,6 +21,560 @@ CONTENTS
[Search on the string '%%%%' for per-release section breaks.]
+%%%%1.6.0%%%% Release Information for hdf5-1.6.0 (03/July/03)
+
+14. Release information for HDF5 version 1.6.0
+================================================
+
+
+INTRODUCTION
+
+This document describes the differences between HDF5-1.4.* and
+HDF5-1.6.0, and contains information on the platforms tested and
+known problems in HDF5-1.6.0. For more details check the HISTORY.txt
+file in the HDF5 source.
+
+The HDF5 documentation can be found on the NCSA ftp server
+(ftp.ncsa.uiuc.edu) in the directory:
+
+ /HDF/HDF5/docs/
+
+For more information look at the HDF5 home page at:
+
+ http://hdf.ncsa.uiuc.edu/HDF5/
+
+If you have any questions or comments, please send them to:
+
+ hdfhelp@ncsa.uiuc.edu
+
+CONTENTS
+
+- New Features
+- Support for new platforms and languages
+- Bug Fixes since HDF5-1.4.0
+- Platforms Tested
+- Known Problems
+
+
+New Features
+============
+
+Configuration:
+--------------
+The following flags have been added to the configuration script:
+--enable-hdf5v1_4 Compile the HDF5 v1.4 compatibility interface
+--enable-filters=all Turn on all internal I/O filters. One may also
+ specify a comma-separated list of filters or the
+ word no. The default is all internal I/O filters.
+--with-mpe=DIR Use MPE instrumentation [default=no]
+--with-szlib=DIR Use szlib library for external szlib I/O filter
+ [default=no]
+
+Library:
+--------
+ Summary: This release has the following new features that are not
+ available in 1.4.* releases
+
+ 1. Generic properties to give application more control on I/O pipeline
+ 2. Time allocation and fill value properties
+ 3. New filters: external compression filter szip
+ internal shuffling and checksum filters
+ 4. Compact storage layout for datasets
+ 5. Redesigned I/O pipeline for better performance.
+
+ For more information see
+ http://hdf.ncsa.uiuc.edu/HDF5/doc_resource/SZIP/index.html
+ http://hdf.ncsa.uiuc.edu/HDF5/doc/ADGuide.html
+ http://hdf.ncsa.uiuc.edu/HDF5/doc/ADGuide/Changes.html
+
+ Complete list of changes:
+
+ * Changed dataset modification time to _not_ be updated when raw data is
+ written to a dataset. The modification time is only updated when the
+ dataset's metadata is modified. QAK - 2003/06/10
+ * Changed H5Sget_select_bounds to use 'hssize_t *' for start and end
+ parameters, instead of 'hsize_t *', to better match other parts of the
+ dataspace API. QAK - 2003/06/04
+ * Changed raw data I/O to only access each chunk once, improving performance
+ in many situations with hyperslabs and large chunks or chunks with
+ filters. These improvements are currently limited to serial I/O, with
+ similar parallel I/O improvements forthcoming sometime in the future.
+ QAK - 2003/05/07
+ * Added parameter to the MPI/POSIX driver. If GPFS is enabled (by
+ modifying the H5FDmpiposix.c file to uncomment the USE_GPFS_HINTS
+ macro), then this extra parameter will turn GPFS hints on and off
+ during runtime. BW - 2003/05/05
+ * Added option to print 1-byte integer datasets as ASCII to h5dump. BW -
+ 2003/04/30
+ * Added a new utility "h5fc". It can be used to compile easily Fortran
+ programs which use HDF5. It automatically uses the compiler the HDF5
+ library was built with and links in any libraries HDF5 requires.
+ BW - 2003/04/10
+ * Added new dataset creation property list functions for working with
+ I/O filters: H5Pmodify_filter, H5Pget_filter_by_id and
+ H5Pall_filters_avail. Also changed H5Zregister to use new method
+ of registering filters with library. QAK - 2003/04/08
+ * The first version of szip compression support were implemented.
+ User should have static szlib library installed. Using function
+ H5Pset_szip to pass the szip parameters to the HDF5 library.
+ More detailed decription of the process will be followed.
+ KY-2003/04/01
+ * Added Fletcher32 checksum as a filter in pipeline. It only works in
+ chunked dataset. SLU - 2003/2/11
+ * MPICH/MPE instrumentation feature added. Use --with-mpe[=DIR] to configure
+ it. AKC - 2003/1/3
+ * New functions H5Gget_num_objs, H5Gget_objname_by_idx and H5Gget_objtype_by_idx
+ are added to the library. SLU - 2002/11/25
+ * H5Dget_offset is added to return the offset of a dataset's data relative
+ to the beginning of the file. SLU - 2002/11/7
+ * Functions H5Tget_native_type and H5Tis_variable_str are added. The first
+ one reconstructs a datatype based on native memory datatype. The second
+ one checks if a datatype is variable string. SLU - 2002/11/6
+ * Added environment variable "HDF5_DISABLE_VERSION_CHECK", which disables
+ the version checking between the header files and the library linked into
+ an application if set to '1'. This should be used with caution, mis-
+ matched headers and library binaries can cause _serious_ problems.
+ QAK - 2002/10/15
+ * Added new API function to get the name of an object in a file, using
+ an open ID (hid_t). QAK - 2002/10/14
+ * Added API functions to return pointer to low-level file handle
+ (H5Fget_vfd_handle and H5FDget_vfd_handle) and related property list
+ setting functions(H5Pset_family_offset and H5Pset_multi_type).
+ SLU - 2002/09/30
+ * Changed "H5P[set|get]_space_time" functions to "H5P[set|get]_alloc_time"
+ Unify all symbolic names for these functions to use "alloc time" instead
+ of other names. QAK - 2002/09/13
+ * Added "H5D_SPACE_ALLOC_INCR" setting to H5D_SPACE_ALLOC_EARLY and
+ H5D_SPACE_ALLOC_LATE for H5Dset_space_time(). This allows chunked
+ datasets to be incrementally allocated as in the 1.4.x branch.
+ QAK - 2002/08/27
+ * Compact dataset is added to the library. The data will be stored in
+ the header message of dataset layout. Space allocation time has to be
+ EARLY. No hyperslab is supported for parallel collective write. There
+ is no API changes except activating H5Pset_layout and H5Pget_layout for
+ compact dataset. -SLU, 2002/8/20
+ * Added 'closing' parameter to VFL 'flush' callback function and H5FDflush.
+ This allows the library to indicate that the file will be closed
+ immediately following the call to 'flush' and can be used to avoid actions
+ that are duplicated in the VFL 'close' callback function. QAK - 2002/05/20
+ * Added feature to parallel chunk allocation routine to not write fill
+ values to chunks allocated if the user has set the "fill time" to never.
+ This can improve parallel I/O performance for chunked
+ datasets. QAK - 2002/05/17
+ * New functions H5Glink2 and H5Gmove2 were added to allow link and move to
+ be in different locations in the same file. The old functions H5Glink
+ and H5Gmove remain valid. SLU - 2002/04/26
+ * Fill-value's behaviors for contiguous dataset have been redefined.
+ Basicly, dataset won't allocate space until it's necessary. Full details
+ are available at http://hdf.ncsa.uiuc.edu/RFC/Fill_Value, at this moment.
+ SLU - 2002/04/11
+ * Added new routine "H5Dfill" to fill a selection with a particular value
+ in memory. QAK - 2002/04/09
+ * Improved performance of "regular" hyperslab I/O when using MPI-IO and the
+ datatype conversion is unneccessary. QAK - 2002/04/02
+ * Improved performance of single hyperslab I/O when datatype conversion is
+ unneccessary. QAK - 2002/04/02
+ * Added new "H5Sget_select_type" API function to determine which type of
+ selection is defined for a dataspace ("all", "none", "hyperslab" or
+ "point"). QAK - 2002/02/07
+ * Added support to read/write portions of chunks directly, if they are
+ uncompressed and too large to cache. This should speed up I/O on chunked
+ datasets for a few more cases. QAK - 2002/01/31
+ * Added H5Rget_obj_type() API function, which performs the same functionality
+ as H5Rget_object_type(), but requires the reference type as a parameter
+ in order to correctly handle dataset region references. Moved
+ H5Rget_object_type() to be only compiled into the library when v1.4
+ compatibility is enabled.
+ * Added a new file access property, file close degree, to control file
+ close behavior. It has four values, H5F_CLOSE_WEAK, H5F_CLOSE_SEMI,
+ H5F_CLOSE_STRONG, and H5F_CLOSE_DEFAULT. Two correspont functions
+ H5Pset_fclose_degree and H5Pget_fclose_degree are also provided. Two
+ new functions H5Fget_obj_count and H5Fget_obj_ids are offerted to assist
+ this new feature. For full details, please refer to the reference
+ manual under the description of H5Fcreate, H5Fopen, H5Fclose and the
+ functions mentioned above.
+ * Removed H5P(get|set)_hyper_cache API function, since the property is no
+ longer used.
+ * Improved performance of non-contiguous hyperslabs (built up with
+ several hyperslab selection calls).
+ * Improved performance of single, contiguous hyperslabs when reading or
+ writing.
+ * As part of the transition to using generic properties everywhere, the
+ parameter of H5Pcreate changed from H5P_class_t to hid_t, as well
+ the return type of H5Pget_class changed from H5P_class_t to hid_t.
+ Further changes are still necessary and will be documented here as they
+ are made.
+ * Improved regular hyperslab I/O by about a factor of 6 or so.
+ * Modified the Pablo build procedure to permit building of the instrumented
+ library to link either with the Trace libraries as before or with the
+ Pablo Performance Caputure Facility.
+ * Added new F90 APIs for generic properties, new filters, and
+ time/space allocation properties.
+ * C++ API:
+ - Added two new member functions: Exception::getFuncName() and
+ Exception::getCFuncName() to provide the name of the member
+ function, where an exception is thrown.
+ - IdComponent::operator= becomes a virtual function because
+ DataType, DataSpace, and PropList provide their own
+ implementation. The new operator= functions invoke H5Tcopy,
+ H5Scopy, and H5Pcopy to make a copy of a datatype, dataspace,
+ and property list, respectively.
+
+Parallel Library:
+-----------------
+
+Tools:
+------
+ * When the "-S" option for "simple" output is chosen, h5ls now displays
+ modification times of datasets in UTC instead of local time.
+ QAK - 2003/06/06
+ * h5diff to compare two HDF5 files was added
+ * h5import to import ascii and binary data to an HDF5 file was added.
+ Old h5import tool in the tools/misc directory was renamed to
+ h5createU8 to reflect its purpose. h5createU8 will be deleted in
+ 1.6.1 release.
+ * Two new scripts h5fc and h5c++ were added to compile F90 and C++
+ HDF5 applications.
+
+Support for new platforms, languages and compilers.
+=======================================
+ * Added C++ API support on HPUX11.00. BMR - 2003/03/19
+ * Absoft compiler is supported for Fortran HDF5 Library.
+ When building with Absoft compiler, add -DH5_ABSOFT to
+ C compilation flags to get correct names of C functions
+ called by Fortran APIs.
+
+
+Bug Fixes since HDF5-1.4.0 release
+==================================
+
+Library
+-------
+ * Don't attempt to perform collective I/O on chunked datasets with
+ parallel I/O. QAK - 2003/06/05
+ * The library now correctly reuses space when objects are deleted in the
+ file. This should be handled correctly for every situation, except
+ datasets with variable-length datatypes are not returning the space they
+ use in the global heap currently. QAK - 2003/04/13
+ * Fixed error in B-tree deletion routine which could cause groups to be
+ corrupted when objects are removed from them.
+ QAK - 2003/04/11
+ * Fixed error in file space freeing code which could cause metadata to
+ fail to be written to the file.
+ QAK - 2003/04/11
+ * -O caused errors in AIX 5.x platforms. Removed it from
+ --enable-production mode. AKC - 2003/03/31
+ * Corrected memory/resource leaks in per-thread key information when
+ thread-safe operation was enabled. QAK - 2003/02/07
+ * Improved error assertion for nil VL strings, making it fails with error
+ stack instead of just assertion failure. SLU - 2002/12/16
+ * Added two new API functions: H5Zunregister & H5Zfilter_avail.
+ QAK - 2002/11/16
+ * Add data shuffle filter(source code H5Zshuffle.c), the combination of the
+ shuffling and compression can make data compression better without suffering
+ much encoding and decoding CPU time for many application datasets(especially
+ for floating point data). This adds a new API function: H5Pset_shuffle.
+ KY - 2002/11/13
+ * Allow scalar dataspaces to be used for parallel I/O. QAK - 2002/11/05
+ * New functions H5Gget_comment(modification), H5Aget_storage_size,
+ H5Arename. SLU - 2002/10/29
+ * Fixed an assertion of H5S_select_iterate that did not account for scalar
+ type that has no dimension sizes. AKC - 2002/10/15
+ * Partially fixed space allocation inefficiencies in the file by
+ improving our algorithms for re-using freed space. QAK - 2002/08/27
+ * Fixed data corruption problem which could occur when fill values were
+ written to a contiguously stored dataset in parallel. QAK - 2002/08/27
+ * Fixed VL memory leak when data is overwritten. The heap objects holding
+ old data are freed. If the fill value writting time is set to
+ H5D_FILL_TIME_NEVER, the library prohibits user to create VL type dataset.
+ The library free all the heap objects storing VL type if there is nested
+ VL type(a VL type contains another VL type). SLU - 2002/07/10
+ * Tweaked a few API functions to use 'size_t' instead of 'unsigned' or
+ 'hsize_t', which may cause errors in some cases.
+
+
+Configuration
+-------------
+ * Included the both the examples of fortran and c++ "make check-install"
+ testing. This tests the correctness of the h5fc command. AKC - 2003/04/22
+ * When using gcc 3.x, we use -std=c99 instead of -ansi for compiling.
+ QAK - 2003/04/11
+ * IA64 platform has its own configure setting and use Intel Compilers as
+ the default compilers (were gcc and pgf90 before.) This also eliminated
+ the segmentation fault in the fortran test. The missing reference of
+ "exit" is fixed too. AKC - 2003/04/02
+
+Performance
+-------------
+ * Improved dataset creation time by about 30% (relative to the 1.4.x
+ branch).
+
+Tools
+-----
+
+ * Added a -force option to h5redeploy. AKC - 2003/03/04
+ * The VL string bug(data and datatype cannot be shown) in h5dump is fixed.
+ -SLU - 2002/11/18
+ * Fixed segfault if h5dump was invoked with some options but no file
+ (e.g., h5dump -H). -AKC, 2002/10/15
+ * Fixed so that the "-i" flag works correctly with the h5dumper.
+ * Fixed segfault when "-v" flag was used with the h5dumper.
+
+
+Documentation
+-------------
+
+
+
+
+
+
+Platforms Tested
+================
+
+ AIX 5.1 (32 and 64-bit) xlc 6.0.0.2
+ xlf 8.1.0.3
+ xlC 6.0.0.4
+ xlc 5.0.2.5
+ xlf 7.1.1.2
+ xlC 5.0.2.5
+ mpcc_r 5.0.2.5
+ mpxlf_r 7.1.1.2
+ poe 3.2.0.10
+ Cray T3E sn6606 2.0.6.08 Cray Standard C Version 6.6.0.2
+ Cray Fortran Version 3.6.0.0.2
+ mpt 2.2.0.0
+ Cray SV1 sn9617 10.0.1.2 Cray Standard C Version 6.6.0.2
+ mpt 2.2.0.0
+ Cray Fortran Version 3.6.0.0.2
+ Cray T90IEEE 10.0.1.01y Cray Standard C Version 6.4.0.2.3
+ Cray Fortran Version 3.4.0.3
+ mpt 2.1.0.0
+ FreeBSD 4.7 gcc 2.95.4
+ g++ 2.95.5
+ HP-UX B.11.00 HP C HP92453-01 A.11.01.20
+ HP F90 v2.4
+ HP ANSI C++ B3910B A.03.13
+ MPIch 1.2.4
+ IRIX 6.5 MIPSpro cc 7.30
+ IRIX64 6.5 (64 & n32) MIPSpro cc 7.3.1.3m
+ F90 MIPSpro 7.3.1.3m (64 only)
+ MPIch 1.2.4
+ Linux 2.4.18 gcc 2.96, 3.2.2, 3.2.3
+ g++ 3.2.2, 3.2.3
+ Intel(R) C++ Version 7.1
+ Intel(R) Fortran Compiler Version 7.1
+ PGI compilers (pgcc, pgf90, pgCC) version 4.0-2
+ MPIch 1.2.4
+ OSF1 V5.1 Compaq C V6.4-014
+ Compaq C V6.3-027
+ Compaq Fortran V5.5-1877
+ Compaq C++ V6.5-014
+ MPI_64bit_R5
+ g++ version 3.0 for C++
+ SunOS 5.7 WorkShop Compilers 5.0 98/12/15 C 5.0
+ (Solaris 2.7) WorkShop Compilers 5.0 98/12/15 C++ 5.0
+ WorkShop Compilers 5.0 98/10/25
+ FORTRAN 90 2.0 Patch 107356-04
+ SunOS 5.8/32 Sun WorkShop 6 update 2 C 5.3
+ (Solaris 2.8) Sun WorkShop 6 update 2 Fortran 90
+ Sun WorkShop 6 update 2 C++ 5.3
+ SunOS 5.8/64 Sun WorkShop 6 update 2 C 5.3
+ (Solaris 2.8) Sun WorkShop 6 update 2 Fortran 90
+ Sun WorkShop 6 update 2 C++ 5.3
+ TFLOPS r1.0.4 v4.3.3 i386 pgcc Rel 3.1-4i with mpich-1.2.4 with
+ local modifications
+ IA-32 Linux 2.4.9 gcc 2.96
+ Intel(R) C++ Version 7.0
+ Intel(R) Fortran Compiler Version 7.0
+
+ IA-64 Linux 2.4.16 ia64 gcc version 2.96 20000731
+ Intel(R) C++ Version 7.0
+ Intel(R) Fortran Compiler Version 7.0
+ Windows 2000 (NT5.0) MSVC++ 6.0
+ DEC Visual Fortran 6.0
+ Intel C and F90 compilers version 7.1
+ Code Warrior 8.0
+ Windows XP MSVC++.NET
+ MAC OS X Darwin 6.5
+ gcc and g++ Apple Computer, Inc. GCC
+ version 1161, based on gcc version 3.1
+
+
+
+Supported Configuration Features Summary
+========================================
+
+ In the tables below
+ y = tested and supported
+ n = not supported or not tested in this release
+ x = not working in this release
+ dna = does not apply
+ ( ) = footnote appears below second table
+
+Platform C C F90 F90 C++ Shared zlib
+ parallel parallel libraries (4)
+Solaris2.7 64-bit y y (1) y y (1) y y y
+Solaris2.7 32-bit y y (1) y y (1) y y y
+Solaris2.8 64-bit y y (1) y y (1) y y y
+Solaris2.8 32-bit y y y y (1) y y y
+IRIX6.5 y y (1) n n n y y
+IRIX64_6.5 64-bit y y (2) y y y y y
+IRIX64_6.5 32-bit y y (2) n n n y y
+HPUX11.00 y y (1) y y y y y
+OSF1 v5.1 y y y y y y y
+T3E y y (5) y y (5) n n y
+SV1 y y (5) y y (5) n n y
+T90 IEEE y y (5) y y (5) n n y
+TFLOPS n y (1) n n n n y
+AIX-5.1 32-bit y y y y y n y
+AIX-5.1 64-bit y y y y y n y
+WinXP (6) y n n n y y y
+WinXP Intel y n n n y y y
+Win2000 y n y n y y y
+Win2000 Intel y n y n y y y
+WinNT CW y n n n n n y
+Mac OS X 10.2 y n n n y y y
+FreeBSD y y (1) n n y y y
+Linux 2.4 gcc (3) y y (1) y (PGI) n y y y
+Linux 2.4 Intel (3) y n y n y n y
+Linux 2.4 PGI (3) y n y n y n y
+Linux 2.4 IA32 Intel y n y n y n y
+Linux 2.4 IA64 Intel y n y n y n y
+
+
+ASCII Table 2 -- for RELEASE.txt
+
+Platform static- Thread- SZIP GASS STREAM- High-level H4/H5
+ exec safe VFD APIs tools (7)
+Solaris2.7 64-bit x y y n y y n
+Solaris2.7 32-bit x y y n y y y
+Solaris2.8 64-bit x y y n y y n
+Solaris2.8 32-bit x y y n y y y
+IRIX6.5 x n y n y y y
+IRIX64_6.5 64-bit x y y y y y y
+IRIX64_6.5 32-bit x y y y y y y
+HPUX11.00 x n y n y y y
+OSF1 v5.1 y n y n y y y
+T3E y n n n y y y
+SV1 y n n n y y y
+T90 IEEE y n n n y y n
+TFLOPS y n n n n n n
+AIX-5.1 32-bit y n y n y y y
+AIX-5.1 64-bit y n y n y y y
+WinXP (6) y n y n n y y
+WinXP Intel y n y n n y y
+Win2000 y n y n n y y
+Win2000 Intel y n y n n y y
+WinNT CW y n y n n y y
+Mac OS X 10.2 y n y n y y n
+FreeBSD y y y n y y y
+Linux 2.4 gcc (3) y y y n y y y
+Linux 2.4 Intel (3) y n y n y n n
+Linux 2.4 PGI (3) y n y n y n n
+Linux 2.4 IA32 Intel y n y n y y y
+Linux 2.4 IA64 Intel y n y n y y y
+
+ Notes: (1) Using mpich 1.2.4.
+ (2) Using mpt and mpich 1.2.4.
+ (3) Linux 2.4 with GNU, Intel, and PGI compilers, respectively.
+ (4) Shared libraries are provided only for the C library, except
+ on Windows where they are provided for C and C++.
+ (5) Using mpt.
+ (6) Binaries only; source code for this platform is not being
+ released at this time.
+ (7) Includes the H4toH5 Library and the h4toh5 and h5toh4
+ utilities.
+ Compiler versions for each platform are listed in the preceding
+ "Platforms Tested" table.
+
+
+
+Known Problems
+==============
+
+* PGI C++ compiler fails when compiling the C++ library's tests.
+ Therefore, we cannot verify that the C++ library built with the PGI C++
+ compiler is correct.
+
+* The h5dump tests may fail to match the expected output on some platforms
+ (e.g. parallel jobs, Windows) where the error messages directed to
+ "stderr" do not appear in the "right order" with output from stdout.
+ This is not an error.
+
+* The stream-vfd test uses ip port 10007 for testing. If another
+ application is already using that port address, the test will hang
+ indefinitely and has to be terminated by the kill command. To try the
+ test again, change the port address in test/stream_test.c to one not
+ being used in the host.
+
+* The --enable-static-exec configure flag fails to compile for Solaris
+ platforms. This is due to the fact that not all of the system
+ libraries on Solaris are available in a static format.
+
+ The --enable-static-exec configure flag also fails to correctly compile
+ on IBM SP2 platform for the serial mode. The parallel mode works fine
+ with this option.
+
+ It is suggested that you don't use this option on these platforms
+ during configuration.
+
+* With the gcc 2.95.2 compiler, HDF 5 uses the `-ansi' flag during
+ compilation. The ANSI version of the compiler complains about not being
+ able to handle the `long long' datatype with the warning:
+
+ warning: ANSI C does not support `long long'
+
+ This warning is innocuous and can be safely ignored.
+
+
+* The Stream VFD was not tested yet under Windows. It is not supported
+ in the TFLOPS machine.
+
+
+* The ./dsets tests failed in the TFLOPS machine if the test program,
+ dsets.c, is compiled with the -O option. The hdf5 library still works
+ correctly with the -O option. The test program works fine if it is
+ compiled with -O1 or -O0. Only -O (same as -O2) causes the test
+ program to fail.
+
+* Certain platforms give false negatives when testing h5ls:
+ - Cray J90 and Cray T90IEEE give errors during testing when displaying
+ some floating-point values. These are benign differences due to
+ the different precision in the values displayed and h5ls appears to
+ be dumping floating-point numbers correctly.
+
+* Before building HDF5 F90 Library from source on Crays
+ replace H5Aff.f90, H5Dff.f90 and H5Pff.f90 files in the fortran/src
+ subdirectory in the top level directory with the Cray-specific files
+ from the site:
+
+* On some platforms that use Intel compilers to build HDF5 fortran library,
+ compilation may fail for fortranlib_test.f90, fflush1.f90 and fflush2.f90
+ complaining about exit subroutine. Comment out the line
+ IF (total_error .ne. 0) CALL exit (total_error)
+
+ ftp://hdf.ncsa.uiuc.edu/pub/outgoing/hdf5/hdf5-1.6.0/F90_source_for_Crays
+
+* On IA32 and IA64 systems, if you use a compiler other than GCC (such as
+ Intel's ecc or icc compilers), you will need to modify the generated
+ "libtool" program after configuration is finished. On or around line 104 of
+ the libtool file, there are lines which look like:
+
+ # How to pass a linker flag through the compiler.
+ wl=""
+
+ change these lines to this:
+
+ # How to pass a linker flag through the compiler.
+ wl="-Wl,"
+
+ UPDATE: This is now done automatically by the configure script. However, if
+ you still experience a problem, you may want to check this line in the
+ libtool file and make sure that it has the correct value.
+
+* Information about building with PGI and Intel compilers is available in
+ INSTALL file sections 5.7 and 5.8
-----------------------------------------------------------------------
%%%%1.4.5%%%% Release Information for hdf5-1.4.5 (02/February/03)
diff --git a/doc/html/ADGuide/RELEASE.txt b/doc/html/ADGuide/RELEASE.txt
index e2a1cb7..bd72669 100644
--- a/doc/html/ADGuide/RELEASE.txt
+++ b/doc/html/ADGuide/RELEASE.txt
@@ -1,12 +1,12 @@
-HDF5 version 1.6.0 released on Thu Jul 3 16:20:52 CDT 2003
+HDF5 version 1.6.0-post0 released on Sun Aug 3 20:54:06 CDT 2003
================================================================================
INTRODUCTION
-This document describes the differences between HDF5-1.4.* and
-HDF5-1.6.0, and contains information on the platforms tested and
-known problems in HDF5-1.6.0. For more details check the HISTORY.txt
+This document describes the differences between HDF5-1.6.0 and
+HDF5-1.6.*, and contains information on the platforms tested and
+known problems in HDF5-1.6.*. For more details check the HISTORY.txt
file in the HDF5 source.
The HDF5 documentation can be found on the NCSA ftp server
@@ -26,7 +26,7 @@ CONTENTS
- New Features
- Support for new platforms and languages
-- Bug Fixes since HDF5-1.4.0
+- Bug Fixes since HDF5-1.6.0
- Platforms Tested
- Known Problems
@@ -34,274 +34,53 @@ CONTENTS
New Features
============
-Configuration:
---------------
-The following flags have been added to the configuration script:
---enable-hdf5v1_4 Compile the HDF5 v1.4 compatibility interface
---enable-filters=all Turn on all internal I/O filters. One may also
- specify a comma-separated list of filters or the
- word no. The default is all internal I/O filters.
---with-mpe=DIR Use MPE instrumentation [default=no]
---with-szlib=DIR Use szlib library for external szlib I/O filter
- [default=no]
-
-Library:
---------
- Summary: This release has the following new features that are not
- available in 1.4.* releases
-
- 1. Generic properties to give application more control on I/O pipeline
- 2. Time allocation and fill value properties
- 3. New filters: external compression filter szip
- internal shuffling and checksum filters
- 4. Compact storage layout for datasets
- 5. Redesigned I/O pipeline for better performance.
-
- For more information see
- http://hdf.ncsa.uiuc.edu/HDF5/doc_resource/SZIP/index.html
- http://hdf.ncsa.uiuc.edu/HDF5/doc/ADGuide.html
- http://hdf.ncsa.uiuc.edu/HDF5/doc/ADGuide/Changes.html
-
- Complete list of changes:
-
- * Changed dataset modification time to _not_ be updated when raw data is
- written to a dataset. The modification time is only updated when the
- dataset's metadata is modified. QAK - 2003/06/10
- * Changed H5Sget_select_bounds to use 'hssize_t *' for start and end
- parameters, instead of 'hsize_t *', to better match other parts of the
- dataspace API. QAK - 2003/06/04
- * Changed raw data I/O to only access each chunk once, improving performance
- in many situations with hyperslabs and large chunks or chunks with
- filters. These improvements are currently limited to serial I/O, with
- similar parallel I/O improvements forthcoming sometime in the future.
- QAK - 2003/05/07
- * Added parameter to the MPI/POSIX driver. If GPFS is enabled (by
- modifying the H5FDmpiposix.c file to uncomment the USE_GPFS_HINTS
- macro), then this extra parameter will turn GPFS hints on and off
- during runtime. BW - 2003/05/05
- * Added option to print 1-byte integer datasets as ASCII to h5dump. BW -
- 2003/04/30
- * Added a new utility "h5fc". It can be used to compile easily Fortran
- programs which use HDF5. It automatically uses the compiler the HDF5
- library was built with and links in any libraries HDF5 requires.
- BW - 2003/04/10
- * Added new dataset creation property list functions for working with
- I/O filters: H5Pmodify_filter, H5Pget_filter_by_id and
- H5Pall_filters_avail. Also changed H5Zregister to use new method
- of registering filters with library. QAK - 2003/04/08
- * The first version of szip compression support were implemented.
- User should have static szlib library installed. Using function
- H5Pset_szip to pass the szip parameters to the HDF5 library.
- More detailed decription of the process will be followed.
- KY-2003/04/01
- * Added Fletcher32 checksum as a filter in pipeline. It only works in
- chunked dataset. SLU - 2003/2/11
- * MPICH/MPE instrumentation feature added. Use --with-mpe[=DIR] to configure
- it. AKC - 2003/1/3
- * New functions H5Gget_num_objs, H5Gget_objname_by_idx and H5Gget_objtype_by_idx
- are added to the library. SLU - 2002/11/25
- * H5Dget_offset is added to return the offset of a dataset's data relative
- to the beginning of the file. SLU - 2002/11/7
- * Functions H5Tget_native_type and H5Tis_variable_str are added. The first
- one reconstructs a datatype based on native memory datatype. The second
- one checks if a datatype is variable string. SLU - 2002/11/6
- * Added environment variable "HDF5_DISABLE_VERSION_CHECK", which disables
- the version checking between the header files and the library linked into
- an application if set to '1'. This should be used with caution, mis-
- matched headers and library binaries can cause _serious_ problems.
- QAK - 2002/10/15
- * Added new API function to get the name of an object in a file, using
- an open ID (hid_t). QAK - 2002/10/14
- * Added API functions to return pointer to low-level file handle
- (H5Fget_vfd_handle and H5FDget_vfd_handle) and related property list
- setting functions(H5Pset_family_offset and H5Pset_multi_type).
- SLU - 2002/09/30
- * Changed "H5P[set|get]_space_time" functions to "H5P[set|get]_alloc_time"
- Unify all symbolic names for these functions to use "alloc time" instead
- of other names. QAK - 2002/09/13
- * Added "H5D_SPACE_ALLOC_INCR" setting to H5D_SPACE_ALLOC_EARLY and
- H5D_SPACE_ALLOC_LATE for H5Dset_space_time(). This allows chunked
- datasets to be incrementally allocated as in the 1.4.x branch.
- QAK - 2002/08/27
- * Compact dataset is added to the library. The data will be stored in
- the header message of dataset layout. Space allocation time has to be
- EARLY. No hyperslab is supported for parallel collective write. There
- is no API changes except activating H5Pset_layout and H5Pget_layout for
- compact dataset. -SLU, 2002/8/20
- * Added 'closing' parameter to VFL 'flush' callback function and H5FDflush.
- This allows the library to indicate that the file will be closed
- immediately following the call to 'flush' and can be used to avoid actions
- that are duplicated in the VFL 'close' callback function. QAK - 2002/05/20
- * Added feature to parallel chunk allocation routine to not write fill
- values to chunks allocated if the user has set the "fill time" to never.
- This can improve parallel I/O performance for chunked
- datasets. QAK - 2002/05/17
- * New functions H5Glink2 and H5Gmove2 were added to allow link and move to
- be in different locations in the same file. The old functions H5Glink
- and H5Gmove remain valid. SLU - 2002/04/26
- * Fill-value's behaviors for contiguous dataset have been redefined.
- Basicly, dataset won't allocate space until it's necessary. Full details
- are available at http://hdf.ncsa.uiuc.edu/RFC/Fill_Value, at this moment.
- SLU - 2002/04/11
- * Added new routine "H5Dfill" to fill a selection with a particular value
- in memory. QAK - 2002/04/09
- * Improved performance of "regular" hyperslab I/O when using MPI-IO and the
- datatype conversion is unneccessary. QAK - 2002/04/02
- * Improved performance of single hyperslab I/O when datatype conversion is
- unneccessary. QAK - 2002/04/02
- * Added new "H5Sget_select_type" API function to determine which type of
- selection is defined for a dataspace ("all", "none", "hyperslab" or
- "point"). QAK - 2002/02/07
- * Added support to read/write portions of chunks directly, if they are
- uncompressed and too large to cache. This should speed up I/O on chunked
- datasets for a few more cases. QAK - 2002/01/31
- * Added H5Rget_obj_type() API function, which performs the same functionality
- as H5Rget_object_type(), but requires the reference type as a parameter
- in order to correctly handle dataset region references. Moved
- H5Rget_object_type() to be only compiled into the library when v1.4
- compatibility is enabled.
- * Added a new file access property, file close degree, to control file
- close behavior. It has four values, H5F_CLOSE_WEAK, H5F_CLOSE_SEMI,
- H5F_CLOSE_STRONG, and H5F_CLOSE_DEFAULT. Two correspont functions
- H5Pset_fclose_degree and H5Pget_fclose_degree are also provided. Two
- new functions H5Fget_obj_count and H5Fget_obj_ids are offerted to assist
- this new feature. For full details, please refer to the reference
- manual under the description of H5Fcreate, H5Fopen, H5Fclose and the
- functions mentioned above.
- * Removed H5P(get|set)_hyper_cache API function, since the property is no
- longer used.
- * Improved performance of non-contiguous hyperslabs (built up with
- several hyperslab selection calls).
- * Improved performance of single, contiguous hyperslabs when reading or
- writing.
- * As part of the transition to using generic properties everywhere, the
- parameter of H5Pcreate changed from H5P_class_t to hid_t, as well
- the return type of H5Pget_class changed from H5P_class_t to hid_t.
- Further changes are still necessary and will be documented here as they
- are made.
- * Improved regular hyperslab I/O by about a factor of 6 or so.
- * Modified the Pablo build procedure to permit building of the instrumented
- library to link either with the Trace libraries as before or with the
- Pablo Performance Caputure Facility.
- * Added new F90 APIs for generic properties, new filters, and
- time/space allocation properties.
- * C++ API:
- - Added two new member functions: Exception::getFuncName() and
- Exception::getCFuncName() to provide the name of the member
- function, where an exception is thrown.
- - IdComponent::operator= becomes a virtual function because
- DataType, DataSpace, and PropList provide their own
- implementation. The new operator= functions invoke H5Tcopy,
- H5Scopy, and H5Pcopy to make a copy of a datatype, dataspace,
- and property list, respectively.
-
-Parallel Library:
------------------
-
-Tools:
-------
- * When the "-S" option for "simple" output is chosen, h5ls now displays
- modification times of datasets in UTC instead of local time.
- QAK - 2003/06/06
- * h5diff to compare two HDF5 files was added
- * h5import to import ascii and binary data to an HDF5 file was added.
- Old h5import tool in the tools/misc directory was renamed to
- h5createU8 to reflect its purpose. h5createU8 will be deleted in
- 1.6.1 release.
- * Two new scripts h5fc and h5c++ were added to compile F90 and C++
- HDF5 applications.
+ Configuration:
+ --------------
+
+ Library:
+ --------
+
+ Parallel Library:
+ -----------------
+
+ Tools:
+ ------
+
Support for new platforms, languages and compilers.
=======================================
- * Added C++ API support on HPUX11.00. BMR - 2003/03/19
- * Absoft compiler is supported for Fortran HDF5 Library.
- When building with Absoft compiler, add -DH5_ABSOFT to
- C compilation flags to get correct names of C functions
- called by Fortran APIs.
-Bug Fixes since HDF5-1.4.0 release
+Bug Fixes since HDF5-1.6.0 release
==================================
-Library
--------
- * Don't attempt to perform collective I/O on chunked datasets with
- parallel I/O. QAK - 2003/06/05
- * The library now correctly reuses space when objects are deleted in the
- file. This should be handled correctly for every situation, except
- datasets with variable-length datatypes are not returning the space they
- use in the global heap currently. QAK - 2003/04/13
- * Fixed error in B-tree deletion routine which could cause groups to be
- corrupted when objects are removed from them.
- QAK - 2003/04/11
- * Fixed error in file space freeing code which could cause metadata to
- fail to be written to the file.
- QAK - 2003/04/11
- * -O caused errors in AIX 5.x platforms. Removed it from
- --enable-production mode. AKC - 2003/03/31
- * Corrected memory/resource leaks in per-thread key information when
- thread-safe operation was enabled. QAK - 2003/02/07
- * Improved error assertion for nil VL strings, making it fails with error
- stack instead of just assertion failure. SLU - 2002/12/16
- * Added two new API functions: H5Zunregister & H5Zfilter_avail.
- QAK - 2002/11/16
- * Add data shuffle filter(source code H5Zshuffle.c), the combination of the
- shuffling and compression can make data compression better without suffering
- much encoding and decoding CPU time for many application datasets(especially
- for floating point data). This adds a new API function: H5Pset_shuffle.
- KY - 2002/11/13
- * Allow scalar dataspaces to be used for parallel I/O. QAK - 2002/11/05
- * New functions H5Gget_comment(modification), H5Aget_storage_size,
- H5Arename. SLU - 2002/10/29
- * Fixed an assertion of H5S_select_iterate that did not account for scalar
- type that has no dimension sizes. AKC - 2002/10/15
- * Partially fixed space allocation inefficiencies in the file by
- improving our algorithms for re-using freed space. QAK - 2002/08/27
- * Fixed data corruption problem which could occur when fill values were
- written to a contiguously stored dataset in parallel. QAK - 2002/08/27
- * Fixed VL memory leak when data is overwritten. The heap objects holding
- old data are freed. If the fill value writting time is set to
- H5D_FILL_TIME_NEVER, the library prohibits user to create VL type dataset.
- The library free all the heap objects storing VL type if there is nested
- VL type(a VL type contains another VL type). SLU - 2002/07/10
- * Tweaked a few API functions to use 'size_t' instead of 'unsigned' or
- 'hsize_t', which may cause errors in some cases.
-
-
-Configuration
--------------
- * Included the both the examples of fortran and c++ "make check-install"
- testing. This tests the correctness of the h5fc command. AKC - 2003/04/22
- * When using gcc 3.x, we use -std=c99 instead of -ansi for compiling.
- QAK - 2003/04/11
- * IA64 platform has its own configure setting and use Intel Compilers as
- the default compilers (were gcc and pgf90 before.) This also eliminated
- the segmentation fault in the fortran test. The missing reference of
- "exit" is fixed too. AKC - 2003/04/02
-
-Performance
--------------
- * Improved dataset creation time by about 30% (relative to the 1.4.x
- branch).
-
-Tools
------
-
- * Added a -force option to h5redeploy. AKC - 2003/03/04
- * The VL string bug(data and datatype cannot be shown) in h5dump is fixed.
- -SLU - 2002/11/18
- * Fixed segfault if h5dump was invoked with some options but no file
- (e.g., h5dump -H). -AKC, 2002/10/15
- * Fixed so that the "-i" flag works correctly with the h5dumper.
- * Fixed segfault when "-v" flag was used with the h5dumper.
-
-
-Documentation
--------------
+ Library
+ -------
+ - Corrected errors with using point selections to access data in
+ chunked datasets. QAK - 2003/07/23
+ - Corrected error with variable-length datatypes and chunked datasets
+ which caused H5Dwrite to fail sometimes. QAK - 2003/07/19
+ - Modified library and file format to support storing indexed storage
+ (chunked dataset) B-tree's with non-default internal 'K' values.
+ QAK - 2003/07/15
+ - Returned H5T_BKG_TEMP support to library after it was accidentally
+ removed. QAK - 2003/07/14
+
+ Configuration
+ -------------
+ - Fixed the error that caused "make install" to fail because of the
+ macro definition syntax of "prefix?=..." AKC - 2003/07/22
+
+ Performance
+ -------------
+ Tools
+ -----
+ Documentation
+ -------------
Platforms Tested