Fixed minor issues. (#1257)

* Fixed minor issues.

* Whoops. Forgot to commit these.

* CMake update.

* One more time.

6 files changed, 3 insertions, 8 deletions

diff --git a/doxygen/CMakeLists.txt b/doxygen/CMakeLists.txt
index 36ce590..ca36ef1 100644
--- a/doxygen/CMakeLists.txt
+++ b/doxygen/CMakeLists.txt
@@ -21,7 +21,7 @@ if (DOXYGEN_FOUND)
   set (DOXYGEN_HTML_HEADER ${HDF5_DOXYGEN_DIR}/hdf5_header.html)
   set (DOXYGEN_HTML_FOOTER ${HDF5_DOXYGEN_DIR}/hdf5_footer.html)
   set (DOXYGEN_HTML_EXTRA_STYLESHEET ${HDF5_DOXYGEN_DIR}/hdf5doxy.css)
-  set (DOXYGEN_HTML_EXTRA_FILES "${HDF5_DOXYGEN_DIR}/hdf5_navtree_hacks.js ${HDF5_DOXYGEN_DIR}/img/ftv2node.png ${HDF5_DOXYGEN_DIR}/img/ftv2pnode.png")
+  set (DOXYGEN_HTML_EXTRA_FILES "${HDF5_DOXYGEN_DIR}/hdf5_navtree_hacks.js ${HDF5_DOXYGEN_DIR}/img/FF-IH_FileGroup.gif ${HDF5_DOXYGEN_DIR}/img/FF-IH_FileObject.gif ${HDF5_DOXYGEN_DIR}/img/FileFormatSpecChunkDiagram.jpg ${HDF5_DOXYGEN_DIR}/img/ftv2node.png ${HDF5_DOXYGEN_DIR}/img/ftv2pnode.png ${HDF5_DOXYGEN_DIR}/img/HDFG-logo.png ${HDF5_DOXYGEN_DIR}/img/IOFlow2.gif ${HDF5_DOXYGEN_DIR}/img/IOFlow3.gif ${HDF5_DOXYGEN_DIR}/img/IOFlow.gif ${HDF5_DOXYGEN_DIR}/img/PaletteExample1.gif ${HDF5_DOXYGEN_DIR}/img/Palettes.fm.anc.gif")
   set (DOXYGEN_TAG_FILE ${HDF5_BINARY_DIR}/hdf5.tag)
   set (DOXYGEN_SERVER_BASED_SEARCH NO)
   set (DOXYGEN_EXTERNAL_SEARCH NO)
diff --git a/doxygen/dox/ReferenceManual.dox b/doxygen/dox/ReferenceManual.dox
index cc0f99b..53f64a7 100644
--- a/doxygen/dox/ReferenceManual.dox
+++ b/doxygen/dox/ReferenceManual.dox
@@ -15,7 +15,6 @@ The functions provided by the HDF5 C-API are grouped into the following
 \li \ref H5S "Dataspaces (H5S)"
 \li \ref H5T "Datatypes (H5T)"
 \li \ref H5E "Error Handling (H5E)"
-\li \ref H5ES "Event Sets (H5ES)"
 \li \ref H5F "Files (H5F)"
 \li \ref H5Z "Filters (H5Z)"
 \li \ref H5G "Groups (H5G)"
@@ -23,14 +22,11 @@ The functions provided by the HDF5 C-API are grouped into the following
 \li \ref H5I "Identifiers (H5I)"
 \li \ref H5 "Library General (H5)"
 \li \ref H5L "Links (H5L)"
-\li \ref H5M "Maps (H5M)"
 \li \ref H5O "Objects (H5O)"
 \li \ref H5P "Property Lists (H5P)"
 \li \ref H5PL "Dynamically-loaded Plugins (H5PL)"
 \li \ref H5R "References (H5R)"
-\li \ref H5VL "Virtual Object Layer (H5VL)"
 </td><td style="border: none;vertical-align: top;">
-\li Functions with \ref ASYNC "asynchronous variants"
 \li \ref api-compat-macros
 \li <a href="./deprecated.html">Deprecated functions</a>
 \li High-level Extensions
@@ -43,8 +39,8 @@ The functions provided by the HDF5 C-API are grouped into the following
     </ul>
 </td></tr>
 <tr><td colspan="3" style="border: none;">
-\ref H5 \ref H5A \ref H5D \ref H5E \ref H5ES \ref H5F \ref H5G \ref H5I \ref H5L
-\ref H5M \ref H5O \ref H5P \ref H5PL \ref H5R \ref H5S \ref H5T \ref H5VL \ref H5Z
+\ref H5 \ref H5A \ref H5D \ref H5E \ref H5F \ref H5G \ref H5I \ref H5L
+\ref H5O \ref H5P \ref H5PL \ref H5R \ref H5S \ref H5T \ref H5Z
 </td></tr>
 </table>
 
diff --git a/doxygen/dox/Specifications.dox b/doxygen/dox/Specifications.dox
index 4ae48d0..bd7e849 100644
--- a/doxygen/dox/Specifications.dox
+++ b/doxygen/dox/Specifications.dox
@@ -3,7 +3,6 @@
 \section DDL
 
 \li \ref DDLBNF110 "DDL in BNF through HDF5 1.10"
-\li \ref DDLBNF112 "DDL in BNF for HDF5 1.12 and above"
 
 \section File Format
 
diff --git a/doxygen/img/IOFlow.gif b/doxygen/img/IOFlow.gif
new file mode 100644
index 0000000..3e79030
--- /dev/null
+++ b/doxygen/img/IOFlow.gif
diff --git a/doxygen/img/IOFlow2.gif b/doxygen/img/IOFlow2.gif
new file mode 100644
index 0000000..c75ca79
--- /dev/null
+++ b/doxygen/img/IOFlow2.gif
diff --git a/doxygen/img/IOFlow3.gif b/doxygen/img/IOFlow3.gif
new file mode 100644
index 0000000..316cd1e
--- /dev/null
+++ b/doxygen/img/IOFlow3.gif