Fixed Spelling Errors (#1166)

* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

* Fixed seg fault with xlf on BE with -qintsize=8

* fixed error function string

* spelling corrections via codespell, added new spell check github actions

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* work around for https://github.com/codespell-project/codespell/issues/2137

* misc

* added missing file

* misc

* misc.

* misc

* switch to using Codespell with GitHub Actions

* misc.

* misc.

* fixed more sp errors

* Fix new typos found by codespell.

* fixed proceed with precede

* fixed variable in fortran test

* fixed minnum

* updated spelling list

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

11 files changed, 26 insertions, 26 deletions

diff --git a/doxygen/dox/H5AC_cache_config_t.dox b/doxygen/dox/H5AC_cache_config_t.dox
index 9b9862b..3faecd5 100644
--- a/doxygen/dox/H5AC_cache_config_t.dox
+++ b/doxygen/dox/H5AC_cache_config_t.dox
@@ -26,7 +26,7 @@
  *
  *     \Emph{*** DEPRECATED ***} Use \Code{H5Fstart/stop} logging functions instead
  *
- *     The trace file is a debuging feature that allow the capture of
+ *     The trace file is a debugging feature that allow the capture of
  *     top level metadata cache requests for purposes of debugging and/or
  *     optimization.  This field should normally be set to \c FALSE, as
  *     trace file collection imposes considerable overhead.
@@ -82,7 +82,7 @@
  *     H5C_incr__off ) && ( decr_mode == H5C_decr__off )}).  There
  *     is no logical reason why this should be so, but it simplifies
  *     implementation and testing, and I can't think of any reason
- *     why it would be desireable.  If you can think of one, I'll
+ *     why it would be desirable.  If you can think of one, I'll
  *     revisit the issue. (JM)
  * \endparblock
  *
@@ -383,7 +383,7 @@
  *    to disk.\n
  *    When the sync point is reached (or when there is a user generated
  *    flush), process zero flushes sufficient entries to bring it into
- *    complience with its min clean size (or flushes all dirty entries in
+ *    compliance with its min clean size (or flushes all dirty entries in
  *    the case of a user generated flush), broad casts the list of
  *    entries just cleaned to all the other processes, and then exits
  *    the sync point.\n
diff --git a/doxygen/dox/Overview.dox b/doxygen/dox/Overview.dox
index 754722e..3b190d6 100644
--- a/doxygen/dox/Overview.dox
+++ b/doxygen/dox/Overview.dox
@@ -4,7 +4,7 @@
 This is the documentation set for HDF5. You can
 <a href="hdf5-doc.tgz">download</a> it as a tgz archive for offline reading.
 
-This is the documention set for HDF5 in terms of specifications and software
+This is the documentation set for HDF5 in terms of specifications and software
 developed and maintained by <a href="https://www.hdfgroup.org/">The HDF
 Group</a>. It is impractical to document the entire HDF5 ecosystem in one place,
 and you should also consult the documentation sets of the many outstanding
diff --git a/doxygen/examples/DebuggingHDF5Applications.html b/doxygen/examples/DebuggingHDF5Applications.html
index c6aaf74..3390887 100644
--- a/doxygen/examples/DebuggingHDF5Applications.html
+++ b/doxygen/examples/DebuggingHDF5Applications.html
@@ -173,7 +173,7 @@ IOT Trap, core dumped.
 	  <tr>
 	    <td align="center">mm</td>
 	    <td align="center">Yes</td>
-	    <td>Library memory managment</td>
+	    <td>Library memory management</td>
 	  </tr>
 	  <tr>
 	    <td align="center">o</td>
diff --git a/doxygen/examples/Filters.html b/doxygen/examples/Filters.html
index 2d5bc5e..7054a3b 100644
--- a/doxygen/examples/Filters.html
+++ b/doxygen/examples/Filters.html
@@ -54,7 +54,7 @@
 
     <p>Two types of filters can be applied to raw data I/O: permanent
       filters and transient filters.  The permanent filter pipeline is
-      defned when the dataset is created while the transient pipeline
+      defined when the dataset is created while the transient pipeline
       is defined for each I/O operation.  During an
       <code>H5Dwrite()</code> the transient filters are applied first
       in the order defined and then the permanent filters are applied
@@ -211,7 +211,7 @@
       should be turned on so such cases can be handled gracefully by
       storing the original data instead of the compressed data.  The
       <em>cd_nvalues</em> should be one with <em>cd_value[0]</em>
-      being a compression agression level between zero and nine,
+      being a compression aggression level between zero and nine,
       inclusive (zero is the fastest compression while nine results in
       the best compression ratio).
 
@@ -252,7 +252,7 @@
 
     </p><p>The function that acts as the filter always returns zero
       (failure) if the <code>md5()</code> function was not detected at
-      configuration time (left as an excercise for the reader).
+      configuration time (left as an exercise for the reader).
       Otherwise the function is broken down to an input and output
       half.  The output half calculates a checksum, increases the size
       of the output buffer if necessary, and appends the checksum to
@@ -374,7 +374,7 @@
 	      <tr valign="top">
 	        <td>Method</td>
 	        <td>This is the name of the method as defined with
-	          <code>H5Zregister()</code> with the charaters
+	          <code>H5Zregister()</code> with the characters
 	          "&lt; or "&gt;" prepended to indicate
 	          input or output.</td>
 	      </tr>
diff --git a/doxygen/examples/H5.format.1.0.html b/doxygen/examples/H5.format.1.0.html
index 2d3ffbe..cdc19ec7 100644
--- a/doxygen/examples/H5.format.1.0.html
+++ b/doxygen/examples/H5.format.1.0.html
@@ -495,7 +495,7 @@ Elena>               "Free-space object"
 		  <td>End of File Address</td>
 		  <td>This is the relative file address of the first byte past
 		    the end of all HDF5 data.  It is used to determine whether a
-		    file has been accidently truncated and as an address where
+		    file has been accidentally truncated and as an address where
 		    file data allocation can occur if the free list is not
 		    used.</td>
 		</tr>
@@ -2414,7 +2414,7 @@ Elena>               "Free-space object"
 	  <td><b>Normalization.</b> The value can be 0 if there is no
 	    normalization, 1 if the most significant bit of the
 	    mantissa is always set (except for 0.0), and 2 if the most
-	    signficant bit of the mantissa is not stored but is
+	    significant bit of the mantissa is not stored but is
 	    implied to be set. The value 3 is reserved and will not
 	    appear in this field.</td>
 	</tr>
@@ -2916,7 +2916,7 @@ Elena>               "Free-space object"
 
     <p>The fill value message stores a single data point value which
       is returned to the application when an uninitialized data point
-      is read from the dataset.  The fill value is interpretted with
+      is read from the dataset.  The fill value is interpreted with
       the same datatype as the dataset.  If no fill value message is
       present then a fill value of all zero is assumed.
 
@@ -3327,7 +3327,7 @@ Elena>               "Free-space object"
 
     <p>
     <center>
-      <table border align=center cellpadding=4 witdh="80%">
+      <table border align=center cellpadding=4 width="80%">
 	<caption align=top>
 	  <b>Filter Pipeline Message</b>
 	</caption>
@@ -3386,7 +3386,7 @@ Elena>               "Free-space object"
 
     <p>
     <center>
-      <table border align=center cellpadding=4 witdh="80%">
+      <table border align=center cellpadding=4 width="80%">
 	<caption align=top>
 	  <b>Filter Pipeline Message</b>
 	</caption>
diff --git a/doxygen/examples/H5.format.1.1.html b/doxygen/examples/H5.format.1.1.html
index ebbbe8e..9894fad 100644
--- a/doxygen/examples/H5.format.1.1.html
+++ b/doxygen/examples/H5.format.1.1.html
@@ -616,7 +616,7 @@ TABLE.list TD { border:none; }
           <td>
             <P>This is the absolute file address of the first byte past
             the end of all HDF5 data.  It is used to determine whether a
-            file has been accidently truncated and as an address where
+            file has been accidentally truncated and as an address where
             file data allocation can occur if space from the free list is
             not used.
             </P>
@@ -3184,7 +3184,7 @@ TABLE.list TD { border:none; }
 	  <td><b>Normalization.</b> The value can be 0 if there is no
 	    normalization, 1 if the most significant bit of the
 	    mantissa is always set (except for 0.0), and 2 if the most
-	    signficant bit of the mantissa is not stored but is
+	    significant bit of the mantissa is not stored but is
 	    implied to be set. The value 3 is reserved and will not
 	    appear in this field.</td>
 	</tr>
diff --git a/doxygen/examples/H5.format.2.0.html b/doxygen/examples/H5.format.2.0.html
index 3653489..4a5fe37 100644
--- a/doxygen/examples/H5.format.2.0.html
+++ b/doxygen/examples/H5.format.2.0.html
@@ -821,7 +821,7 @@ II.A. Disk Format: Level 0A - Format Signature and Superblock</a></h3>
           <td>
             <p>This is the absolute file address of the first byte past
             the end of all HDF5 data.  It is used to determine whether a
-            file has been accidently truncated and as an address where
+            file has been accidentally truncated and as an address where
             file data allocation can occur if space from the free list is
             not used.
             </p>
@@ -4910,7 +4910,7 @@ III.F. Disk Format: Level 1F - Fractal Heap</a></h3>
             enough to store objects greater than 16 bytes or not.  If the
             heap ID length is 18 bytes or smaller, the &lsquo;normal&rsquo; tiny heap ID
             form is used.  If the heap ID length is greater than 18 bytes in
-            length, the &ldquo;extented&rdquo; form is used.  See format description below
+            length, the &ldquo;extended&rdquo; form is used.  See format description below
             for both sub-types.
             </p>
           </td>
@@ -7884,7 +7884,7 @@ IV.A.2. Disk Format: Level 2A2 - Data Object Header Messages</a></h3>
 
 	      <tr>
 		<td align="center"><code>3</code></td>
-		<td>Message stored is not shared, but is sharable.
+		<td>Message stored is not shared, but is shareable.
                 </td>
 	      </tr>
 
diff --git a/doxygen/examples/H5.format.html b/doxygen/examples/H5.format.html
index e16805f..cbcb387 100644
--- a/doxygen/examples/H5.format.html
+++ b/doxygen/examples/H5.format.html
@@ -936,7 +936,7 @@
           <td>
             <p>This is the absolute file address of the first byte past
               the end of all HDF5 data.  It is used to determine whether a
-              file has been accidently truncated and as an address where
+              file has been accidentally truncated and as an address where
               file data allocation can occur if space from the free list is
               not used.
             </p>
@@ -8691,7 +8691,7 @@ three rows are needed.
 
 	        <tr>
 		      <td align="center"><code>3</code></td>
-		      <td>Message stored is not shared, but is sharable.
+		      <td>Message stored is not shared, but is shareable.
               </td>
 	        </tr>
 
@@ -20202,7 +20202,7 @@ disk address for the chunk.</p>
 	</tr>
 
 	<tr>
-	  <td><p>Length fo External File Name</p></td>
+	  <td><p>Length of External File Name</p></td>
 	  <td><p>This is the length for the external file name.
         <p>This field exists if bit 0 of <em>flags</em> is set.</p>
         </p>
diff --git a/doxygen/examples/ThreadSafeLibrary.html b/doxygen/examples/ThreadSafeLibrary.html
index 2ea42b4..97f7742 100644
--- a/doxygen/examples/ThreadSafeLibrary.html
+++ b/doxygen/examples/ThreadSafeLibrary.html
@@ -165,7 +165,7 @@ The structure is defined in <code>H5private.h</code> as:
 
 <blockquote>
   <pre>
-    /* cancelability structure */
+    /* cancellability structure */
     typedef struct H5_cancel_struct {
       int previous_state;
       unsigned int cancel_count;
diff --git a/doxygen/examples/VFL.html b/doxygen/examples/VFL.html
index 9776f96..624d942 100644
--- a/doxygen/examples/VFL.html
+++ b/doxygen/examples/VFL.html
@@ -306,7 +306,7 @@ H5Dread(dataset, type, mspace, fspace, buffer, dxpl);
 </PRE>
 
 <P>
-The transfer propery list can be queried in a manner similar to the file
+The transfer property list can be queried in a manner similar to the file
 access property list: the driver provides a function (or functions) to return
 various information about the transfer property list:
 
@@ -1210,7 +1210,7 @@ Flush all data for file <VAR>file</VAR> to storage.
 </P>
 <P>
 <STRONG>Example:</STRONG> The sec2 driver doesn't cache any data but it also doesn't
-extend the Unix file as agressively as it should. Therefore, when finalizing a
+extend the Unix file as aggressively as it should. Therefore, when finalizing a
 file it should write a zero to the last byte of the allocated region so that
 when reopening the file later the EOF marker will be at least as large as the
 EOA marker saved in the superblock (otherwise HDF5 will refuse to open the
diff --git a/doxygen/hdf5_navtree_hacks.js b/doxygen/hdf5_navtree_hacks.js
index 942970c..dda8984 100644
--- a/doxygen/hdf5_navtree_hacks.js
+++ b/doxygen/hdf5_navtree_hacks.js
@@ -223,7 +223,7 @@ $(document).ready(function() {
   (function (){ // wait until the first "selected" element has been created
     try {
 
-      // this line will triger an exception if there is no #selected element, i.e., before the tree structure is complete.
+      // this line will trigger an exception if there is no #selected element, i.e., before the tree structure is complete.
       document.getElementById("selected").className = "item selected";
 
       // ok, the default tree has been created, we can keep going...