Merge/update CMake, presets,java and tools (#3393)

9 files changed, 22 insertions, 22 deletions

diff --git a/doxygen/dox/IntroHDF5.dox b/doxygen/dox/IntroHDF5.dox
index ec46217..3ca7d00 100644
--- a/doxygen/dox/IntroHDF5.dox
+++ b/doxygen/dox/IntroHDF5.dox
@@ -124,7 +124,7 @@ It is a 2-dimensional 5 x 3 array (the dataspace). The datatype should not be co
 </ul>
 
 \subsubsection subsec_intro_desc_prop_dspace Dataspaces
-A dataspace describes the layout of a dataset’s data elements. It can consist of no elements (NULL),
+A dataspace describes the layout of a dataset's data elements. It can consist of no elements (NULL),
 a single element (scalar), or a simple array.
 
 <table>
@@ -141,7 +141,7 @@ in size (i.e. they are extendible).
 
 There are two roles of a dataspace:
 \li It contains the spatial information (logical layout) of a dataset stored in a file. This includes the rank and dimensions of a dataset, which are a permanent part of the dataset definition.
-\li It describes an application’s data buffers and data elements participating in I/O. In other words, it can be used to select a portion or subset of a dataset.
+\li It describes an application's data buffers and data elements participating in I/O. In other words, it can be used to select a portion or subset of a dataset.
 
 <table>
 <caption>The dataspace is used to describe both the logical layout of a dataset and a subset of a dataset.</caption>
@@ -602,8 +602,8 @@ Navigate back: \ref index "Main" / \ref GettingStarted
 @page HDF5Examples HDF5 Examples
 Example programs of how to use HDF5 are provided below.
 For HDF-EOS specific examples, see the <a href="http://hdfeos.org/zoo/index.php">examples</a>
-of how to access and visualize NASA HDF-EOS files using IDL, MATLAB, and NCL on the
-<a href="http://hdfeos.org/">HDF-EOS Tools and Information Center</a> page.
+of how to access and visualize NASA HDF-EOS files using Python, IDL, MATLAB, and NCL
+on the <a href="http://hdfeos.org/">HDF-EOS Tools and Information Center</a> page.
 
 \section secHDF5Examples Examples
 \li \ref LBExamples
diff --git a/doxygen/dox/LearnBasics.dox b/doxygen/dox/LearnBasics.dox
index 298672d..1f57cca 100644
--- a/doxygen/dox/LearnBasics.dox
+++ b/doxygen/dox/LearnBasics.dox
@@ -59,7 +59,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create a file
 </td>
-<td>C  Fortran  C++  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/java/examples/intro/H5_CreateFile.java">Java</a>  Python
+<td>C  Fortran  C++  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/java/examples/intro/H5_CreateFile.java">Java</a>  Python
 </td>
 <td>
 </td>
@@ -67,7 +67,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create a dataset
 </td>
-<td><a href="https://raw.githubusercontent.com//HDFGroup/hdf5/hdf5_1_10/examples/h5_crtdat.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_crtdat.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_crtdat.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/java/examples/intro/H5_CreateDataset.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtdat.py">Python</a>
+<td><a href="https://raw.githubusercontent.com//HDFGroup/hdf5/hdf5_1_12/examples/h5_crtdat.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_crtdat.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_crtdat.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/java/examples/intro/H5_CreateDataset.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtdat.py">Python</a>
 </td>
 <td>
 </td>
@@ -75,7 +75,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Read and write to a dataset
 </td>
-<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/examples/h5_rdwt.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_rdwt.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_rdwt.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/java/examples/intro/H5_ReadWrite.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_rdwt.py">Python</a>
+<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/examples/h5_rdwt.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_rdwt.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_rdwt.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/java/examples/intro/H5_ReadWrite.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_rdwt.py">Python</a>
 </td>
 <td>
 </td>
@@ -83,7 +83,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create an attribute
 </td>
-<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/examples/h5_crtatt.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_crtatt.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_crtatt.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/java/examples/intro/H5_CreateAttribute.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtatt.py">Python</a>
+<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/examples/h5_crtatt.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_crtatt.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_crtatt.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/java/examples/intro/H5_CreateAttribute.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtatt.py">Python</a>
 </td>
 <td>
 </td>
@@ -91,7 +91,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create a group
 </td>
-<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/examples/h5_crtgrp.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_crtgrp.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_crtgrp.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/java/examples/intro/H5_CreateGroup.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtgrp.py">Python</a>
+<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/examples/h5_crtgrp.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_crtgrp.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_crtgrp.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/java/examples/intro/H5_CreateGroup.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtgrp.py">Python</a>
 </td>
 <td>
 </td>
@@ -99,7 +99,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create groups in a file using absolute and relative paths
 </td>
-<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/examples/h5_crtgrpar.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_crtgrpar.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_crtgrpar.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/java/examples/intro/H5_CreateGroupAbsoluteRelative.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtgrpar.py">Python</a>
+<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/examples/h5_crtgrpar.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_crtgrpar.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_crtgrpar.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/java/examples/intro/H5_CreateGroupAbsoluteRelative.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtgrpar.py">Python</a>
 </td>
 <td>
 </td>
@@ -107,7 +107,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create datasets in a group
 </td>
-<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/examples/h5_crtgrpd.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_crtgrpd.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_crtgrpd.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/java/examples/intro/H5_CreateGroupDataset.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtgrpd.py">Python</a>
+<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/examples/h5_crtgrpd.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_crtgrpd.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_crtgrpd.cpp">C++</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/java/examples/intro/H5_CreateGroupDataset.java">Java</a>  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_crtgrpd.py">Python</a>
 </td>
 <td>
 </td>
@@ -115,7 +115,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create a file and dataset and select/read a subset from the dataset
 </td>
-<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/examples/h5_subset.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_subset.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_subset.cpp">C++</a>  Java  Python
+<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/examples/h5_subset.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_subset.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_subset.cpp">C++</a>  Java  Python
 </td>
 <td>Also see examples to Write by row (and column) below.
 </td>
@@ -123,7 +123,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create an extendible (unlimited dimension) dataset
 </td>
-<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/examples/h5_extend.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_extend.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_extend.cpp">C++</a>  Java  Python
+<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/examples/h5_extend.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_extend.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_extend.cpp">C++</a>  Java  Python
 </td>
 <td>Also see examples to Extend by row (and column) below
 </td>
@@ -131,7 +131,7 @@ These examples (C, C++, Fortran) are provided in the HDF5 source code and (Unix)
 <tr>
 <td>Create a chunked and compressed dataset
 </td>
-<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/examples/h5_cmprss.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/fortran/examples/h5_cmprss.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_10/c++/examples/h5tutr_cmprss.cpp">C++</a>  Java  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_cmprss.py">Python</a>
+<td><a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/examples/h5_cmprss.c">C</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/fortran/examples/h5_cmprss.f90">Fortran</a>  <a href="https://raw.githubusercontent.com/HDFGroup/hdf5/hdf5_1_12/c++/examples/h5tutr_cmprss.cpp">C++</a>  Java  <a href="https://support.hdfgroup.org/ftp/HDF5/examples/Py/h5_cmprss.py">Python</a>
 </td>
 <td>
 </td>
diff --git a/doxygen/dox/UsersGuide.dox b/doxygen/dox/UsersGuide.dox
index a8ff060..3a9c745 100644
--- a/doxygen/dox/UsersGuide.dox
+++ b/doxygen/dox/UsersGuide.dox
@@ -126,7 +126,7 @@ HDF5 Release 1.12
         <li> \ref subsubsec_dataset_program_transfer
         <li> \ref subsubsec_dataset_program_read
     </ul>
-\li \ref subsec_dataset_transfer Data Transfer
+\li \ref subsec_dataset_transfer
     <ul>
         <li> \ref subsubsec_dataset_transfer_pipe
         <li> \ref subsubsec_dataset_transfer_filter
diff --git a/doxygen/dox/high_level/extension.dox b/doxygen/dox/high_level/extension.dox
index d754b96..20a099a 100644
--- a/doxygen/dox/high_level/extension.dox
+++ b/doxygen/dox/high_level/extension.dox
@@ -392,7 +392,7 @@ H5_HLRDLL herr_t H5LRread_region(hid_t obj_id,
  *
  * \details H5LRget_region_info() queries information about the data
  *          pointed by a region reference \p ref. It returns one of the
- *          absolute paths to a dataset, length of the path, dataset’s rank
+ *          absolute paths to a dataset, length of the path, dataset's rank
  *          and datatype, description of the referenced region and type of
  *          the referenced region. Any output argument can be NULL if that
  *          argument does not need to be returned.
diff --git a/doxygen/examples/H5Fclose.c b/doxygen/examples/H5Fclose.c
index 525bad3..8c2ef08 100644
--- a/doxygen/examples/H5Fclose.c
+++ b/doxygen/examples/H5Fclose.c
@@ -1,7 +1,7 @@
 #include "hdf5.h"
 
 int
-main()
+main(void)
 {
     hid_t file;
     if ((file = H5Fcreate("foo.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
diff --git a/doxygen/examples/H5Fcreate.c b/doxygen/examples/H5Fcreate.c
index 525bad3..8c2ef08 100644
--- a/doxygen/examples/H5Fcreate.c
+++ b/doxygen/examples/H5Fcreate.c
@@ -1,7 +1,7 @@
 #include "hdf5.h"
 
 int
-main()
+main(void)
 {
     hid_t file;
     if ((file = H5Fcreate("foo.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
diff --git a/doxygen/examples/hello_hdf5.c b/doxygen/examples/hello_hdf5.c
index a37d39f..f078090 100644
--- a/doxygen/examples/hello_hdf5.c
+++ b/doxygen/examples/hello_hdf5.c
@@ -1,7 +1,7 @@
 #include "hdf5.h"
 
 int
-main()
+main(void)
 {
     herr_t   retval;
     unsigned majnum, minnum, relnum;
diff --git a/doxygen/examples/tables/fileDriverLists.dox b/doxygen/examples/tables/fileDriverLists.dox
index 1aae3ce..125df63 100644
--- a/doxygen/examples/tables/fileDriverLists.dox
+++ b/doxygen/examples/tables/fileDriverLists.dox
@@ -94,8 +94,8 @@ version of the file can be written back to disk or abandoned.</td>
 <tr>
 <td>Family</td>
 <td>#H5FD_FAMILY</td>
-<td>With this driver, the HDF5 file’s address space is partitioned into pieces and sent to
-separate storage files using an underlying driver of the user’s choice. This driver is for
+<td>With this driver, the HDF5 file's address space is partitioned into pieces and sent to
+separate storage files using an underlying driver of the user's choice. This driver is for
 systems that do not support files larger than 2 gigabytes.</td>
 <td>#H5Pset_fapl_family</td>
 </tr>
diff --git a/doxygen/examples/tables/propertyLists.dox b/doxygen/examples/tables/propertyLists.dox
index cac7fd2..dccefb5 100644
--- a/doxygen/examples/tables/propertyLists.dox
+++ b/doxygen/examples/tables/propertyLists.dox
@@ -920,4 +920,4 @@ encoding for object names.</td>
 //! [acpl_table]
  *
  */
- 
+ 
\ No newline at end of file