Sync 1.14 branch with develop (#3923)

* Fix build error on freebsd (#3883)

Fixes:

checking for config freebsd12.1... no
checking for config freebsd... found
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpicc' is GNU gcc-9.2.0
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpif90' is GNU gfortran-9.2.0
stdout: .: cannot open ./config/classic-fflags: No such file or directory

* Correct CMake command and example packaging (#3888)

* Feat: Hashpin sensitive dependencies on GitHub Actions and enable Dependabot to update them monthly (#3892)

* feat: hashpin sensitive dependencies on GHAs

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

* feat: enable dependabot for monthly updates on GHA

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

---------

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

* Some changes to portal links when they could be found on docs.hdfgroup.org, and changed the helpdesk link to help.hdfgroup.org (#3893)

* Updated some portal links to go directly to docs.hdfgroup. 

* Fixed some portal and help desk links

* Add variable option syncing for examples (#3885)

* Add period(.) at the end of the sentence for consistency. (#3897)

* Remove redundant backslash character from comment. (#3899)

* Disable doxygen as errors for netcdf (#3900)

* disable building doxygen for netcdf test

* Doc versions (#3903)

* Added missing \since tags to H5D.

* Committing clang-format changes

* Fixed H5T version info.

* Committing clang-format changes

* Added missing version info to H5E.

* Committing clang-format changes

* Added version info to H5F public APIs.

* Committing clang-format changes

* Added missing H5Z public API version info.

* Added missing version info to H5G public APIs

* Added missing version info to H5I public API.

* Added missing version info to H5 public APIs

* Committing clang-format changes

* Added missing version info to H5P public APIs

* Added missing version info to H5R public APIs

* Fix comment error.

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Change Trouble Shooting to Troubleshooting (#3905)

* Implement optimized support for vector I/O in Subfiling VFD (#3896)

Vector I/O requests are now processed within a single
set of I/O call batches, rather than each I/O vector
entry (tuple constructed from the types, addrs, sizes
and bufs arrays) being processed individually. This allows I/O to be
more efficiently parallelized among the I/O concentrator processes
during large I/O requests.

* Fixed some calculations and add test cases for issues spotted from review

* Removed a variable that was compensating for previous miscalculations

* Add 'warning density' computation to the warnhist script (#3910)

* Add 'warning density' computation to the warnhist script, along with several
cleanups to it.   Add "--enable-show-all-warnings" configure (and CMake)
option to disable compiler diagnostic suppression (and therefore show all the
otherwise suppressed compiler diagnostics), disabled by default.  Clean up
a buncn of misc. warnings.

Signed-off-by: Quincey Koziol <qkoziol@amazon.com>

* Added H5Fdelete_f with test (#3912)

* New Fortran Examples added (#3916)

* added subfiling example

* Added filtered writes with no selection example

* Version and space corrections.

* Restore H5_VERSION definition in configure.ac.

* renamed defined H5_VERS* to avoid conflicts (#3926)

9 files changed, 96 insertions, 9 deletions

diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index 87557db..60c0c3a 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -431,6 +431,7 @@ if (BUILD_STATIC_LIBS)
       FILES
           ${HDF5_F90_BINARY_DIR}/static/H5f90i_gen.h
           ${HDF5_F90_BINARY_DIR}/static/H5fortran_types.F90
+          ${HDF5_F90_BINARY_DIR}/H5config_f.inc
       DESTINATION
           ${HDF5_INSTALL_INCLUDE_DIR}
       COMPONENT
@@ -441,6 +442,7 @@ else ()
       FILES
           ${HDF5_F90_BINARY_DIR}/shared/H5f90i_gen.h
           ${HDF5_F90_BINARY_DIR}/shared/H5fortran_types.F90
+          ${HDF5_F90_BINARY_DIR}/H5config_f.inc
       DESTINATION
           ${HDF5_INSTALL_INCLUDE_DIR}
       COMPONENT
diff --git a/fortran/src/H5Fff.F90 b/fortran/src/H5Fff.F90
index d311177..79aa5a7 100644
--- a/fortran/src/H5Fff.F90
+++ b/fortran/src/H5Fff.F90
@@ -256,6 +256,43 @@ CONTAINS
 !>
 !! \ingroup FH5F
 !!
+!! \brief Deletes an HDF5 file
+!!
+!! \param name       Name of the file to delete
+!! \param hdferr     \fortran_error
+!! \param access_prp File access property list identifier
+!!
+!! See C API: @ref H5Fdelete()
+!!
+  SUBROUTINE h5fdelete_f(name, hdferr, access_prp)
+    IMPLICIT NONE
+    CHARACTER(LEN=*), INTENT(IN)           :: name
+    INTEGER         , INTENT(OUT)          :: hdferr
+    INTEGER(HID_T)  , INTENT(IN), OPTIONAL :: access_prp
+
+    INTEGER(HID_T) :: access_prp_default
+    CHARACTER(LEN=LEN_TRIM(name)+1,KIND=C_CHAR) :: c_name
+
+    INTERFACE
+       INTEGER(C_INT) FUNCTION H5Fdelete(name, access_prp_default) BIND(C,NAME='H5Fdelete')
+         IMPORT :: C_CHAR, C_INT
+         IMPORT :: HID_T
+         CHARACTER(KIND=C_CHAR), DIMENSION(*) :: name
+         INTEGER(HID_T), VALUE :: access_prp_default
+       END FUNCTION H5Fdelete
+    END INTERFACE
+
+    c_name  = TRIM(name)//C_NULL_CHAR
+
+    access_prp_default = H5P_DEFAULT_F
+    IF (PRESENT(access_prp)) access_prp_default = access_prp
+
+    hdferr = INT(H5Fdelete(c_name, access_prp_default))
+
+  END SUBROUTINE h5fdelete_f
+!>
+!! \ingroup FH5F
+!!
 !! \brief Asynchronously flushes all buffers associated with a file to disk.
 !!
 !! \param object_id Identifier of object used to identify the file.
@@ -285,7 +322,7 @@ CONTAINS
     INTEGER(KIND=C_INT) :: line_default = 0
 
     INTERFACE
-       INTEGER FUNCTION H5Fflush_async(file, func, line, object_id, scope, es_id) &
+       INTEGER(C_INT) FUNCTION H5Fflush_async(file, func, line, object_id, scope, es_id) &
             BIND(C,NAME='H5Fflush_async')
          IMPORT :: C_CHAR, C_INT, C_PTR
          IMPORT :: HID_T
@@ -303,8 +340,8 @@ CONTAINS
     IF(PRESENT(func)) func_default = func
     IF(PRESENT(line)) line_default = INT(line, C_INT)
 
-    hdferr = H5Fflush_async(file_default, func_default, line_default, &
-         object_id, INT(scope, C_INT), es_id)
+    hdferr = INT(H5Fflush_async(file_default, func_default, line_default, &
+         object_id, INT(scope, C_INT), es_id))
 
   END SUBROUTINE h5fflush_async_f
 !>
diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c
index 0392c2b..b1dc7db 100644
--- a/fortran/src/H5_f.c
+++ b/fortran/src/H5_f.c
@@ -771,6 +771,8 @@ h5init_flags_c(int_f *h5d_flags, size_t_f *h5d_size_flags, int_f *h5e_flags, hid
      *  H5S flags
      */
     h5s_hid_flags[0] = (hid_t_f)H5S_ALL;
+    h5s_hid_flags[1] = (hid_t_f)H5S_BLOCK;
+    h5s_hid_flags[2] = (hid_t_f)H5S_PLIST;
 
     h5s_hsize_flags[0] = (hsize_t_f)H5S_UNLIMITED;
 
diff --git a/fortran/src/H5_ff.F90 b/fortran/src/H5_ff.F90
index 05a48ac..fe6337a 100644
--- a/fortran/src/H5_ff.F90
+++ b/fortran/src/H5_ff.F90
@@ -139,7 +139,7 @@ MODULE H5LIB
   INTEGER, DIMENSION(1:H5S_FLAGS_LEN) :: H5S_flags
   INTEGER, PARAMETER :: H5S_HSIZE_FLAGS_LEN = 1
   INTEGER(HSIZE_T), DIMENSION(1:H5S_HSIZE_FLAGS_LEN) :: H5S_hsize_flags
-  INTEGER, PARAMETER :: H5S_HID_FLAGS_LEN = 1
+  INTEGER, PARAMETER :: H5S_HID_FLAGS_LEN = 3
   INTEGER(HSIZE_T), DIMENSION(1:H5S_HID_FLAGS_LEN)   :: H5S_hid_flags
   !
   ! H5T flags declaration
@@ -632,7 +632,9 @@ CONTAINS
     !
     ! H5S flags
     !
-    H5S_ALL_F = H5S_hid_flags(1)
+    H5S_ALL_F   = H5S_hid_flags(1)
+    H5S_BLOCK_F = H5S_hid_flags(2)
+    H5S_PLIST_F = H5S_hid_flags(3)
 
     H5S_UNLIMITED_F = H5S_hsize_flags(1)
 
diff --git a/fortran/src/H5config_f.inc.cmake b/fortran/src/H5config_f.inc.cmake
index 6652076..77ff707 100644
--- a/fortran/src/H5config_f.inc.cmake
+++ b/fortran/src/H5config_f.inc.cmake
@@ -9,7 +9,7 @@
 !   If you do not have access to either file, you may request a copy from     *
 !   help@hdfgroup.org.                                                        *
 ! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
-! fortran/src/H5config_f.inc. Generated from fortran/src/H5config_f.inc.in by configure
+! fortran/H5config_f.inc. Generated from fortran/src/H5config_f.inc.cmake by CMake
 
 ! Define if there is parallel support
 #cmakedefine01 CMAKE_H5_HAVE_PARALLEL
@@ -28,8 +28,8 @@
 #endif
 
 ! Define if on APPLE
-#cmakedefine01 H5_HAVE_DARWIN
-#if H5_HAVE_DARWIN == 0
+#cmakedefine01 CMAKE_H5_HAVE_DARWIN
+#if CMAKE_H5_HAVE_DARWIN == 0
 #undef H5_HAVE_DARWIN
 #else
 #define H5_HAVE_DARWIN
@@ -116,3 +116,22 @@
 #else
 #define H5_NO_DEPRECATED_SYMBOLS
 #endif
+
+! For major interface/format changes
+#define H5_VERS_MAJOR @H5_VERS_MAJOR@
+
+! For minor interface/format changes
+#define H5_VERS_MINOR @H5_VERS_MINOR@
+
+! For tweaks, bug-fixes, or development
+#define H5_VERS_RELEASE @H5_VERS_RELEASE@
+
+! macros for comparing versions
+#define H5_VERSION_GE(Maj, Min, Rel)                                                   \
+    (((H5_VERS_MAJOR == Maj) && (H5_VERS_MINOR == Min) && (H5_VERS_RELEASE >= Rel)) || \
+     ((H5_VERS_MAJOR == Maj) && (H5_VERS_MINOR > Min)) || (H5_VERS_MAJOR > Maj))
+
+#define H5_VERSION_LE(Maj, Min, Rel)                                                   \
+    (((H5_VERS_MAJOR == Maj) && (H5_VERS_MINOR == Min) && (H5_VERS_RELEASE <= Rel)) || \
+     ((H5_VERS_MAJOR == Maj) && (H5_VERS_MINOR < Min)) || (H5_VERS_MAJOR < Maj))
+
diff --git a/fortran/src/H5config_f.inc.in b/fortran/src/H5config_f.inc.in
index 3aeded9..afcfa6e 100644
--- a/fortran/src/H5config_f.inc.in
+++ b/fortran/src/H5config_f.inc.in
@@ -80,3 +80,21 @@
 ! Define if deprecated public API symbols are disabled
 #undef NO_DEPRECATED_SYMBOLS
 
+! For major interface/format changes
+#undef VERS_MAJOR_TMP
+
+! For minor interface/format changes
+#undef VERS_MINOR_TMP
+
+! For tweaks, bug-fixes, or development
+#undef VERS_RELEASE_TMP
+
+! macros for comparing versions
+#define VERSION_GE(Maj, Min, Rel)                                                      \
+    (((H5_VERS_MAJOR == Maj) && (H5_VERS_MINOR == Min) && (H5_VERS_RELEASE >= Rel)) || \
+     ((H5_VERS_MAJOR == Maj) && (H5_VERS_MINOR > Min)) || (H5_VERS_MAJOR > Maj))
+
+#define VERSION_LE(Maj, Min, Rel)                                                      \
+    (((H5_VERS_MAJOR == Maj) && (H5_VERS_MINOR == Min) && (H5_VERS_RELEASE <= Rel)) || \
+     ((H5_VERS_MAJOR == Maj) && (H5_VERS_MINOR < Min)) || (H5_VERS_MAJOR < Maj))
+
diff --git a/fortran/src/H5f90global.F90 b/fortran/src/H5f90global.F90
index aa04623..fb25f7e 100644
--- a/fortran/src/H5f90global.F90
+++ b/fortran/src/H5f90global.F90
@@ -773,6 +773,8 @@ MODULE H5GLOBAL
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: H5S_UNLIMITED_F
   !DEC$ATTRIBUTES DLLEXPORT :: H5S_ALL_F
+  !DEC$ATTRIBUTES DLLEXPORT :: H5S_BLOCK_F
+  !DEC$ATTRIBUTES DLLEXPORT :: H5S_PLIST_F
   !DEC$ATTRIBUTES DLLEXPORT :: H5S_SCALAR_F
   !DEC$ATTRIBUTES DLLEXPORT :: H5S_SIMPLE_F
   !DEC$ATTRIBUTES DLLEXPORT :: H5S_NULL_F
@@ -796,7 +798,9 @@ MODULE H5GLOBAL
 !> @{
   INTEGER(HSIZE_T) :: H5S_UNLIMITED_F  !< H5S_UNLIMITED
 
-  INTEGER(HID_T) :: H5S_ALL_F  !< H5S_ALL
+  INTEGER(HID_T) :: H5S_ALL_F   !< H5S_ALL
+  INTEGER(HID_T) :: H5S_BLOCK_F !< H5S_BLOCK
+  INTEGER(HID_T) :: H5S_PLIST_F !< H5S_PLIST
 
   INTEGER :: H5S_SCALAR_F  !< H5S_SCALAR
   INTEGER :: H5S_SIMPLE_F  !< H5S_SIMPLE
diff --git a/fortran/src/Makefile.am b/fortran/src/Makefile.am
index d42a41d..44561f6 100644
--- a/fortran/src/Makefile.am
+++ b/fortran/src/Makefile.am
@@ -75,6 +75,7 @@ install-data-local:
 	fi
 	$(CP) $(top_builddir)/$(subdir)/H5f90i_gen.h $(DESTDIR)$(includedir)/.
 	$(CP) $(top_srcdir)/fortran/src/H5f90i.h $(DESTDIR)$(includedir)/.
+	$(CP) $(top_builddir)/$(subdir)/H5config_f.inc $(DESTDIR)$(includedir)/.
 
 uninstall-local:
 	@if test -n "$(F9XMODEXT)" -a "X$(F9XMODEXT)" != "Xo"; then      \
@@ -84,6 +85,7 @@ uninstall-local:
 	fi;								\
 	$(RM) $(DESTDIR)$(bindir)/$(H5FC_NAME)
 	$(RM) $(DESTDIR)$(includedir)/H5f90i*.h
+	$(RM) $(DESTDIR)$(includedir)/H5config_f.inc
 
 # Also install and uninstall (uninstall-local above) h5fc script
 install-exec-local:
diff --git a/fortran/src/hdf5_fortrandll.def.in b/fortran/src/hdf5_fortrandll.def.in
index 55f4f2b..119e140 100644
--- a/fortran/src/hdf5_fortrandll.def.in
+++ b/fortran/src/hdf5_fortrandll.def.in
@@ -121,6 +121,7 @@ H5ES_mp_H5ESGET_ERR_COUNT_F
 H5ES_mp_H5ESCLOSE_F
 ; H5F
 H5F_mp_H5FCREATE_F
+H5F_mp_H5FDELETE_F
 H5F_mp_H5FCREATE_ASYNC_F
 H5F_mp_H5FFLUSH_F
 H5F_mp_H5FFLUSH_ASYNC_F