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authorDana Robinson <derobins@hdfgroup.org>2019-03-31 01:31:11 (GMT)
committerDana Robinson <derobins@hdfgroup.org>2019-03-31 01:31:11 (GMT)
commit6e0d81dc8b65dc078fa31dae50acf96f3ce372e7 (patch)
tree588378063a4eae446ffe0c7e684f4e3aff6af358 /fortran/src
parentfdbbe61bcf2c5bcbea8a4e08bd6ce8c62f7b43bc (diff)
parent799a732650735b8ad05a0398781d2a26ec47b288 (diff)
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Merge pull request #1629 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:feature/json_vol to feature/json_vol
* commit '799a732650735b8ad05a0398781d2a26ec47b288': (185 commits) Updated the VOL struct. The json_vol test fails, though, because the plugin can't be found. Will diagnose later. Correct examples for packaging HDFFV-10738 Wrong INTENT for H5LTread_dataset_double_f Changes that show the right way to iterate over enums. Changes that show the right way to iterate over enums. Test improvement Description Moved the new tests to a more appropriate test function. Platforms tested: Linux/64 (jelly) Used the H5_INC_ENUM macro to squash enum value increment warnings. Fixed HDFFV-10210 and HDFFV-10587 Description: - Added parameter validation (HDFFV-10210) - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438) - Fixed typos in various tests Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test) Fix CMake error in name Commented out memcpy overlap check while we investigate parallel filters issues. Yanked check for memcpy n > 0 - Added H5MMprivate.h #includes where needed - Added casts to quiet H5MM_memcpy warnings - Removed char * casts from HDmemcpy Added an H5MM_memcpy call that checks for buffer overlap. Added the HDopen work-around on windows to pio_engine.c Adds _wopen support on Windows so that files with UTF-8 names can be opened. CMake: fix pthread linking to only be private Add API routines to retrieve, restore, reset, and free library state. Added a note of bug fix for HDFFV-10705. Fixed the MANIFEST Fix issue with direct chunk write not updating the "last chunk" index cache. Fix issues involving datasets being "no allocated" when they contain cached raw data. ...
Diffstat (limited to 'fortran/src')
-rw-r--r--fortran/src/CMakeLists.txt6
-rw-r--r--fortran/src/H5Fff.F9093
-rw-r--r--fortran/src/H5Of.c48
-rw-r--r--fortran/src/H5Off.F90107
-rw-r--r--fortran/src/H5Pff.F9091
-rw-r--r--fortran/src/H5Sf.c161
-rw-r--r--fortran/src/H5Sff.F90304
-rw-r--r--fortran/src/H5_f.c11
-rw-r--r--fortran/src/H5_ff.F9074
-rw-r--r--fortran/src/H5f90global.F9013
-rw-r--r--fortran/src/H5f90proto.h13
-rw-r--r--fortran/src/H5match_types.c13
-rw-r--r--fortran/src/hdf5_fortrandll.def.in5
13 files changed, 418 insertions, 521 deletions
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index 025fab5..f71e820 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -9,11 +9,7 @@ if (WIN32)
if (NOT H5_HAVE_PARALLEL)
set (H5_NOPAREXP ";")
endif ()
- if (NOT HDF5_ENABLE_F2003)
- set (H5_NOF03EXP ";")
- else ()
- set (H5_F03EXP ";")
- endif ()
+ set (H5_F03EXP ";")
configure_file (${HDF5_F90_SRC_SOURCE_DIR}/hdf5_fortrandll.def.in ${HDF5_F90_SRC_BINARY_DIR}/hdf5_fortrandll.def @ONLY)
endif ()
endif ()
diff --git a/fortran/src/H5Fff.F90 b/fortran/src/H5Fff.F90
index 9c8b941..cc51f37 100644
--- a/fortran/src/H5Fff.F90
+++ b/fortran/src/H5Fff.F90
@@ -946,4 +946,97 @@ CONTAINS
END SUBROUTINE h5fget_file_image_f
+!****s* H5F (F03)/h5fget_dset_no_attrs_hint_f_F03
+!
+! NAME
+! h5fget_dset_no_attrs_hint_f
+!
+! PURPOSE
+! Gets the value of the "minimize dataset headers" value which creates
+! smaller dataset object headers when its set and no attributes are present.
+!
+! INPUTS
+! file_id - Target file identifier.
+!
+! OUTPUTS
+! minimize - Value of the setting.
+! hdferr - error code:
+! 0 on success and -1 on failure
+!
+! AUTHOR
+! Dana Robinson
+! January 2019
+!
+! Fortran2003 Interface:
+ SUBROUTINE h5fget_dset_no_attrs_hint_f(file_id, minimize, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: file_id
+ LOGICAL , INTENT(OUT) :: minimize
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+ LOGICAL(C_BOOL) :: c_minimize
+
+ INTERFACE
+ INTEGER FUNCTION h5fget_dset_no_attrs_hint_c(file_id, minimize) BIND(C, NAME='H5Fget_dset_no_attrs_hint')
+ IMPORT :: HID_T, C_BOOL
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN), VALUE :: file_id
+ LOGICAL(C_BOOL), INTENT(OUT) :: minimize
+ END FUNCTION h5fget_dset_no_attrs_hint_c
+ END INTERFACE
+
+ hdferr = INT(h5fget_dset_no_attrs_hint_c(file_id, c_minimize))
+
+ ! Transfer value of C C_BOOL type to Fortran LOGICAL
+ minimize = c_minimize
+
+ END SUBROUTINE h5fget_dset_no_attrs_hint_f
+
+!****s* H5F (F03)/h5fset_dset_no_attrs_hint_f_F03
+!
+! NAME
+! h5fset_dset_no_attrs_hint_f
+!
+! PURPOSE
+! Sets the value of the "minimize dataset headers" value which creates
+! smaller dataset object headers when its set and no attributes are present.
+!
+! INPUTS
+! file_id - Target file identifier.
+! minimize - Value of the setting.
+!
+! OUTPUTS
+! hdferr - error code:
+! 0 on success and -1 on failure
+!
+! AUTHOR
+! Dana Robinson
+! January 2019
+!
+! Fortran2003 Interface:
+ SUBROUTINE h5fset_dset_no_attrs_hint_f(file_id, minimize, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: file_id
+ LOGICAL , INTENT(IN) :: minimize
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+ LOGICAL(C_BOOL) :: c_minimize
+
+ INTERFACE
+ INTEGER FUNCTION h5fset_dset_no_attrs_hint_c(file_id, minimize) BIND(C, NAME='H5Fset_dset_no_attrs_hint')
+ IMPORT :: HID_T, C_BOOL
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN), VALUE :: file_id
+ LOGICAL(C_BOOL), INTENT(IN), VALUE :: minimize
+ END FUNCTION h5fset_dset_no_attrs_hint_c
+ END INTERFACE
+
+ ! Transfer value of Fortran LOGICAL to C C_BOOL type
+ c_minimize = minimize
+
+ hdferr = INT(h5fset_dset_no_attrs_hint_c(file_id, c_minimize))
+
+ END SUBROUTINE h5fset_dset_no_attrs_hint_f
+
END MODULE H5F
+
diff --git a/fortran/src/H5Of.c b/fortran/src/H5Of.c
index 45b7f09..08305ea 100644
--- a/fortran/src/H5Of.c
+++ b/fortran/src/H5Of.c
@@ -27,11 +27,15 @@ fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info);
int_f
fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) {
+ /* This function does not used the field parameter because we want
+ * this function to fill the unfilled fields with C's default values.
+ */
+
struct tm *ts;
object_info->fileno = Oinfo.fileno;
object_info->addr = (haddr_t_f)Oinfo.addr;
-
+
object_info->type = (int_f)Oinfo.type;
object_info->rc = (int_f)Oinfo.rc;
@@ -96,6 +100,8 @@ fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) {
object_info->meta_size.obj.index_size = (hsize_t_f)Oinfo.meta_size.obj.index_size;
object_info->meta_size.obj.heap_size = (hsize_t_f)Oinfo.meta_size.obj.heap_size;
+ object_info->meta_size.attr.index_size = (hsize_t_f)Oinfo.meta_size.attr.index_size;
+ object_info->meta_size.attr.heap_size = (hsize_t_f)Oinfo.meta_size.attr.heap_size;
return 0;
@@ -138,7 +144,7 @@ h5olink_c (hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen
* Call H5Olink function.
*/
if((hid_t_f)H5Olink((hid_t)*object_id, (hid_t)*new_loc_id, c_name,
- (hid_t)*lcpl_id, (hid_t)*lapl_id) < 0)
+ (hid_t)*lcpl_id, (hid_t)*lapl_id) < 0)
HGOTO_DONE(FAIL);
done:
@@ -229,6 +235,7 @@ h5oclose_c ( hid_t_f *object_id )
* idx - Iteration position at which to start
* op - Callback function passing data regarding the link to the calling application
* op_data - User-defined pointer to data required by the application for its processing of the link
+ * fields - Flags specifying the fields to include in object_info.
*
* OUTPUTS
* idx - Position at which an interrupted iteration may be restarted
@@ -241,7 +248,7 @@ h5oclose_c ( hid_t_f *object_id )
* SOURCE
*/
int_f
-h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data )
+h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data, int_f *fields )
/******/
{
int_f ret_value = -1; /* Return value */
@@ -250,7 +257,8 @@ h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op,
/*
* Call H5Ovisit2
*/
- func_ret_value = H5Ovisit2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, H5O_INFO_ALL);
+
+ func_ret_value = H5Ovisit2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, (unsigned)*fields);
ret_value = (int_f)func_ret_value;
@@ -302,6 +310,7 @@ h5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id)
* name - Name of group, relative to loc_id.
* namelen - Name length.
* lapl_id - Link access property list.
+ * fields - Flags specifying the fields to include in object_info.
* OUTPUTS
* object_info - Buffer in which to return object information.
*
@@ -314,7 +323,7 @@ h5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id)
*/
int_f
h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id,
- H5O_info_t_f *object_info)
+ H5O_info_t_f *object_info, int_f *fields)
/******/
{
char *c_name = NULL; /* Buffer to hold C string */
@@ -331,10 +340,10 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l
* Call H5Oinfo_by_name function.
*/
if(H5Oget_info_by_name2((hid_t)*loc_id, c_name,
- &Oinfo, H5O_INFO_ALL, (hid_t)*lapl_id) < 0)
+ &Oinfo, (unsigned)*fields, (hid_t)*lapl_id) < 0)
HGOTO_DONE(FAIL);
- ret_value = fill_h5o_info_t_f(Oinfo,object_info);
+ ret_value = fill_h5o_info_t_f(Oinfo, object_info);
done:
if(c_name)
@@ -354,6 +363,7 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l
* lapl_id - Link access property list.
* OUTPUTS
* object_info - Buffer in which to return object information.
+ * fields - Flags specifying the fields to include in object_info.
*
* RETURNS
* 0 on success, -1 on failure
@@ -364,7 +374,7 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l
*/
int_f
h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen,
- int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info)
+ int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info, int_f *fields)
/******/
{
char *c_group_name = NULL; /* Buffer to hold C string */
@@ -386,7 +396,7 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen,
* Call H5Oinfo_by_idx function.
*/
if(H5Oget_info_by_idx2((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n,
- &Oinfo, H5O_INFO_ALL, (hid_t)*lapl_id) < 0)
+ &Oinfo, (unsigned)*fields, (hid_t)*lapl_id) < 0)
HGOTO_DONE(FAIL);
ret_value = fill_h5o_info_t_f(Oinfo,object_info);
@@ -404,6 +414,7 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen,
* Calls H5Oget_info
* INPUTS
* object_id - Identifier for target object.
+ * fields - Flags specifying the fields to include in object_info.
* OUTPUTS
* object_info - Buffer in which to return object information.
*
@@ -415,7 +426,7 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen,
* SOURCE
*/
int_f
-h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info)
+h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info, int_f *fields)
/******/
{
int_f ret_value = 0; /* Return value */
@@ -424,7 +435,7 @@ h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info)
/*
* Call H5Oinfo_by_name function.
*/
- if(H5Oget_info2((hid_t)*object_id, &Oinfo, H5O_INFO_ALL) < 0)
+ if(H5Oget_info2((hid_t)*object_id, &Oinfo, (unsigned)*fields) < 0)
HGOTO_DONE(FAIL);
ret_value = fill_h5o_info_t_f(Oinfo,object_info);
@@ -457,8 +468,8 @@ h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info)
*/
int_f
h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len,
- hid_t_f *dst_loc_id, _fcd dst_name, size_t_f *dst_name_len,
- hid_t_f *ocpypl_id, hid_t_f *lcpl_id )
+ hid_t_f *dst_loc_id, _fcd dst_name, size_t_f *dst_name_len,
+ hid_t_f *ocpypl_id, hid_t_f *lcpl_id )
/******/
{
char *c_src_name = NULL; /* Buffer to hold C string */
@@ -478,7 +489,7 @@ h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len,
* Call H5Ocopy function.
*/
if(H5Ocopy( (hid_t)*src_loc_id, c_src_name, (hid_t)*dst_loc_id, c_dst_name,
- (hid_t)*ocpypl_id, (hid_t)*lcpl_id) < 0)
+ (hid_t)*ocpypl_id, (hid_t)*lcpl_id) < 0)
HGOTO_DONE(FAIL);
done:
@@ -503,6 +514,7 @@ h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len,
* idx - Iteration position at which to start
* op - Callback function passing data regarding the link to the calling application
* op_data - User-defined pointer to data required by the application for its processing of the link
+ * fields - Flags specifying the fields to include in object_info.
*
* OUTPUTS
* idx - Position at which an interrupted iteration may be restarted
@@ -516,7 +528,7 @@ h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len,
*/
int_f
h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order,
- H5O_iterate_t op, void *op_data, hid_t_f *lapl_id )
+ H5O_iterate_t op, void *op_data, hid_t_f *lapl_id, int_f *fields )
/******/
{
int_f ret_value = -1; /* Return value */
@@ -533,7 +545,7 @@ h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f
* Call H5Ovisit
*/
func_ret_value = H5Ovisit_by_name2( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order,
- op, op_data, H5O_INFO_ALL, (hid_t)*lapl_id);
+ op, op_data, (unsigned)*fields, (hid_t)*lapl_id);
ret_value = (int_f)func_ret_value;
done:
@@ -763,7 +775,7 @@ h5oset_comment_by_name_c (hid_t_f *object_id, _fcd name, size_t_f *namelen, _fc
*/
int_f
h5oopen_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen,
- int_f *index_type, int_f *order, hsize_t_f *n, hid_t_f *obj_id, hid_t_f *lapl_id)
+ int_f *index_type, int_f *order, hsize_t_f *n, hid_t_f *obj_id, hid_t_f *lapl_id)
/******/
{
char *c_group_name = NULL; /* Buffer to hold C string */
@@ -868,7 +880,7 @@ h5oget_comment_c (hid_t_f *object_id, _fcd comment, size_t_f *commentsize, hssi
*/
int_f
h5oget_comment_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *name_size,
- _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id)
+ _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id)
/******/
{
char *c_comment = NULL; /* Buffer to hold C string */
diff --git a/fortran/src/H5Off.F90 b/fortran/src/H5Off.F90
index 243ec29..8c77230 100644
--- a/fortran/src/H5Off.F90
+++ b/fortran/src/H5Off.F90
@@ -69,6 +69,15 @@ MODULE H5O
TYPE(mesg_t) :: mesg
END TYPE hdr_t
+ TYPE, BIND(C) :: c_hdr_t
+ INTEGER(C_INT) :: version ! Version number of header format in file
+ INTEGER(C_INT) :: nmesgs ! Number of object header messages
+ INTEGER(C_INT) :: nchunks ! Number of object header chunks
+ INTEGER(C_INT) :: flags ! Object header status flags
+ TYPE(space_t) :: space
+ TYPE(mesg_t) :: mesg
+ END TYPE c_hdr_t
+
! Extra metadata storage for obj & attributes
TYPE, BIND(C) :: H5_ih_info_t
INTEGER(hsize_t) :: index_size ! btree and/or list
@@ -83,7 +92,7 @@ MODULE H5O
TYPE, BIND(C) :: h5o_info_t
INTEGER(C_LONG) :: fileno ! File number that object is located in
INTEGER(haddr_t) :: addr ! Object address in file
- INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.)
+ INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.)
INTEGER :: rc ! Reference count of object
INTEGER, DIMENSION(8) :: atime ! Access time ! -- NOTE --
@@ -98,6 +107,28 @@ MODULE H5O
TYPE(meta_size_t) :: meta_size
END TYPE h5o_info_t
+! C interoperable structure for h5o_info_t. The Fortran derived type returns the time
+! values as an integer array as specified in the Fortran intrinsic DATE_AND_TIME(VALUES).
+! Whereas, this derived type does not.
+
+ TYPE, BIND(C) :: c_h5o_info_t
+ INTEGER(C_LONG) :: fileno ! File number that object is located in
+ INTEGER(haddr_t) :: addr ! Object address in file
+ INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.)
+ INTEGER(C_INT) :: rc ! Reference count of object
+
+ INTEGER(KIND=TIME_T) :: atime ! Access time
+ INTEGER(KIND=TIME_T) :: mtime ! modify time
+ INTEGER(KIND=TIME_T) :: ctime ! create time
+ INTEGER(KIND=TIME_T) :: btime ! Access time
+
+ INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object
+
+ TYPE(c_hdr_t) :: hdr
+
+ TYPE(meta_size_t) :: meta_size
+ END TYPE c_h5o_info_t
+
!*****
CONTAINS
@@ -834,12 +865,16 @@ CONTAINS
! return_value - returns the return value of the first operator that returns a positive value, or
! zero if all members were processed with no operator returning non-zero.
! hdferr - Returns 0 if successful and -1 if fails
+!
+! Optional parameters:
+! fields - Flags specifying the fields to include in object_info.
+!
! AUTHOR
! M. Scot Breitenfeld
! November 19, 2008
!
! Fortran2003 Interface:
- SUBROUTINE h5ovisit_f(object_id, index_type, order, op, op_data, return_value, hdferr)
+ SUBROUTINE h5ovisit_f(object_id, index_type, order, op, op_data, return_value, hdferr, fields)
IMPLICIT NONE
INTEGER(HID_T), INTENT(IN) :: object_id
INTEGER, INTENT(IN) :: index_type
@@ -849,10 +884,12 @@ CONTAINS
TYPE(C_PTR) :: op_data
INTEGER, INTENT(OUT) :: return_value
INTEGER, INTENT(OUT) :: hdferr
+ INTEGER, INTENT(IN), OPTIONAL :: fields
!*****
+ INTEGER :: fields_c
INTERFACE
- INTEGER FUNCTION h5ovisit_c(object_id, index_type, order, op, op_data) &
+ INTEGER FUNCTION h5ovisit_c(object_id, index_type, order, op, op_data, fields) &
BIND(C, NAME='h5ovisit_c')
IMPORT :: C_FUNPTR, C_PTR
IMPORT :: HID_T
@@ -862,10 +899,14 @@ CONTAINS
INTEGER, INTENT(IN) :: order
TYPE(C_FUNPTR), VALUE :: op
TYPE(C_PTR), VALUE :: op_data
+ INTEGER, INTENT(IN) :: fields
END FUNCTION h5ovisit_c
END INTERFACE
- return_value = h5ovisit_c(object_id, index_type, order, op, op_data)
+ fields_c = H5O_INFO_ALL_F
+ IF(PRESENT(fields)) fields_c = fields
+
+ return_value = h5ovisit_c(object_id, index_type, order, op, op_data, fields_c)
IF(return_value.GE.0)THEN
hdferr = 0
@@ -894,26 +935,29 @@ CONTAINS
!
! Optional parameters:
! lapl_id - Link access property list.
+! fields - Flags specifying the fields to include in object_info.
!
! AUTHOR
! M. Scot Breitenfeld
! December 1, 2008
!
! Fortran2003 Interface:
- SUBROUTINE h5oget_info_by_name_f(loc_id, name, object_info, hdferr, lapl_id)
+ SUBROUTINE h5oget_info_by_name_f(loc_id, name, object_info, hdferr, lapl_id, fields)
IMPLICIT NONE
INTEGER(HID_T) , INTENT(IN) :: loc_id
CHARACTER(LEN=*), INTENT(IN) :: name
TYPE(h5o_info_t), INTENT(OUT), TARGET :: object_info
INTEGER , INTENT(OUT) :: hdferr
INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id
+ INTEGER , INTENT(IN) , OPTIONAL :: fields
!*****
INTEGER(SIZE_T) :: namelen
INTEGER(HID_T) :: lapl_id_default
TYPE(C_PTR) :: ptr
+ INTEGER :: fields_c
INTERFACE
- INTEGER FUNCTION h5oget_info_by_name_c(loc_id, name, namelen, lapl_id_default, object_info) &
+ INTEGER FUNCTION h5oget_info_by_name_c(loc_id, name, namelen, lapl_id_default, object_info, fields) &
BIND(C, NAME='h5oget_info_by_name_c')
IMPORT :: c_char, c_ptr
IMPORT :: HID_T, SIZE_T
@@ -923,10 +967,13 @@ CONTAINS
INTEGER(SIZE_T) , INTENT(IN) :: namelen
INTEGER(HID_T) , INTENT(IN) :: lapl_id_default
TYPE(C_PTR),VALUE :: object_info
-
+ INTEGER , INTENT(IN) :: fields
END FUNCTION h5oget_info_by_name_c
END INTERFACE
+ fields_c = H5O_INFO_ALL_F
+ IF(PRESENT(fields)) fields_c = fields
+
namelen = LEN(name)
lapl_id_default = H5P_DEFAULT_F
@@ -934,7 +981,7 @@ CONTAINS
ptr = C_LOC(object_info)
- hdferr = H5Oget_info_by_name_c(loc_id, name, namelen, lapl_id_default, ptr)
+ hdferr = H5Oget_info_by_name_c(loc_id, name, namelen, lapl_id_default, ptr, fields_c)
END SUBROUTINE H5Oget_info_by_name_f
@@ -953,34 +1000,43 @@ CONTAINS
! object_info - Buffer in which to return object information.
! hdferr - Returns 0 if successful and -1 if fails.
!
+! Optional parameters:
+! fields - Flags specifying the fields to include in object_info.
+!
! AUTHOR
! M. Scot Breitenfeld
! May 11, 2012
!
! Fortran2003 Interface:
- SUBROUTINE h5oget_info_f(object_id, object_info, hdferr)
+ SUBROUTINE h5oget_info_f(object_id, object_info, hdferr, fields)
USE, INTRINSIC :: ISO_C_BINDING
IMPLICIT NONE
INTEGER(HID_T) , INTENT(IN) :: object_id
TYPE(h5o_info_t), INTENT(OUT), TARGET :: object_info
INTEGER , INTENT(OUT) :: hdferr
+ INTEGER , INTENT(IN), OPTIONAL :: fields
!*****
TYPE(C_PTR) :: ptr
-
+ INTEGER :: fields_c
+
INTERFACE
- INTEGER FUNCTION h5oget_info_c(object_id, object_info) &
+ INTEGER FUNCTION h5oget_info_c(object_id, object_info, fields) &
BIND(C, NAME='h5oget_info_c')
IMPORT :: C_PTR
IMPORT :: HID_T
IMPLICIT NONE
INTEGER(HID_T), INTENT(IN) :: object_id
TYPE(C_PTR), VALUE :: object_info
+ INTEGER, INTENT(IN) :: fields
END FUNCTION h5oget_info_c
END INTERFACE
+ fields_c = H5O_INFO_ALL_F
+ IF(PRESENT(fields)) fields_c = fields
+
ptr = C_LOC(object_info)
- hdferr = H5Oget_info_c(object_id, ptr)
+ hdferr = H5Oget_info_c(object_id, ptr, fields_c)
END SUBROUTINE H5Oget_info_f
@@ -1006,6 +1062,7 @@ CONTAINS
!
! Optional parameters:
! lapl_id - Link access property list. (Not currently used.)
+! fields - Flags specifying the fields to include in object_info.
!
! AUTHOR
! M. Scot Breitenfeld
@@ -1013,7 +1070,7 @@ CONTAINS
!
! Fortran2003 Interface:
SUBROUTINE h5oget_info_by_idx_f(loc_id, group_name, index_field, order, n, &
- object_info, hdferr, lapl_id)
+ object_info, hdferr, lapl_id, fields)
USE, INTRINSIC :: ISO_C_BINDING
IMPLICIT NONE
@@ -1025,14 +1082,16 @@ CONTAINS
TYPE(h5o_info_t), INTENT(OUT), TARGET :: object_info
INTEGER , INTENT(OUT) :: hdferr
INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id
+ INTEGER , INTENT(IN) , OPTIONAL :: fields
!*****
INTEGER(SIZE_T) :: namelen
INTEGER(HID_T) :: lapl_id_default
TYPE(C_PTR) :: ptr
+ INTEGER :: fields_c
INTERFACE
INTEGER FUNCTION h5oget_info_by_idx_c(loc_id, group_name, namelen, &
- index_field, order, n, lapl_id_default, object_info) BIND(C, NAME='h5oget_info_by_idx_c')
+ index_field, order, n, lapl_id_default, object_info, fields) BIND(C, NAME='h5oget_info_by_idx_c')
IMPORT :: c_char, c_ptr, c_funptr
IMPORT :: HID_T, SIZE_T, HSIZE_T
INTEGER(HID_T) , INTENT(IN) :: loc_id
@@ -1043,17 +1102,20 @@ CONTAINS
INTEGER(HSIZE_T), INTENT(IN) :: n
INTEGER(HID_T) , INTENT(IN) :: lapl_id_default
TYPE(C_PTR), VALUE :: object_info
-
+ INTEGER, INTENT(IN) :: fields
END FUNCTION h5oget_info_by_idx_c
END INTERFACE
+ fields_c = H5O_INFO_ALL_F
+ IF(PRESENT(fields)) fields_c = fields
+
namelen = LEN(group_name)
lapl_id_default = H5P_DEFAULT_F
IF(PRESENT(lapl_id)) lapl_id_default = lapl_id
ptr = C_LOC(object_info)
- hdferr = H5Oget_info_by_idx_c(loc_id, group_name, namelen, index_field, order, n, lapl_id_default, ptr)
+ hdferr = H5Oget_info_by_idx_c(loc_id, group_name, namelen, index_field, order, n, lapl_id_default, ptr, fields_c)
END SUBROUTINE H5Oget_info_by_idx_f
@@ -1086,6 +1148,7 @@ CONTAINS
!
! Optional parameters:
! lapl_id - Link access property list identifier.
+! fields - Flags specifying the fields to include in object_info.
!
! AUTHOR
! M. Scot Breitenfeld
@@ -1093,7 +1156,7 @@ CONTAINS
!
! Fortran2003 Interface:
SUBROUTINE h5ovisit_by_name_f(loc_id, object_name, index_type, order, op, op_data, &
- return_value, hdferr, lapl_id)
+ return_value, hdferr, lapl_id, fields)
IMPLICIT NONE
INTEGER(HID_T) , INTENT(IN) :: loc_id
CHARACTER(LEN=*), INTENT(IN) :: object_name
@@ -1105,14 +1168,16 @@ CONTAINS
INTEGER , INTENT(OUT) :: return_value
INTEGER , INTENT(OUT) :: hdferr
INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id
+ INTEGER , INTENT(IN) , OPTIONAL :: fields
!*****
INTEGER(SIZE_T) :: namelen
INTEGER(HID_T) :: lapl_id_default
+ INTEGER :: fields_c
INTERFACE
INTEGER FUNCTION h5ovisit_by_name_c(loc_id, object_name, namelen, index_type, order, &
- op, op_data, lapl_id) BIND(C, NAME='h5ovisit_by_name_c')
+ op, op_data, lapl_id, fields) BIND(C, NAME='h5ovisit_by_name_c')
IMPORT :: C_CHAR, C_PTR, C_FUNPTR
IMPORT :: HID_T, SIZE_T
IMPLICIT NONE
@@ -1124,16 +1189,20 @@ CONTAINS
TYPE(C_FUNPTR) , VALUE :: op
TYPE(C_PTR) , VALUE :: op_data
INTEGER(HID_T) , INTENT(IN) :: lapl_id
+ INTEGER , INTENT(IN) :: fields
END FUNCTION h5ovisit_by_name_c
END INTERFACE
+ fields_c = H5O_INFO_ALL_F
+ IF(PRESENT(fields)) fields_c = fields
+
namelen = LEN(object_name)
lapl_id_default = H5P_DEFAULT_F
IF(PRESENT(lapl_id)) lapl_id_default = lapl_id
return_value = h5ovisit_by_name_c(loc_id, object_name, namelen, index_type, order, &
- op, op_data, lapl_id_default)
+ op, op_data, lapl_id_default, fields_c)
IF(return_value.GE.0)THEN
hdferr = 0
diff --git a/fortran/src/H5Pff.F90 b/fortran/src/H5Pff.F90
index 455c72e..13a2953 100644
--- a/fortran/src/H5Pff.F90
+++ b/fortran/src/H5Pff.F90
@@ -8023,8 +8023,97 @@ SUBROUTINE h5pget_virtual_dsetname_f(dcpl_id, index, name, hdferr, name_len)
END SUBROUTINE h5pget_virtual_dsetname_f
+!****s* H5P (F03)/h5pget_dset_no_attrs_hint_f_F03
+!
+! NAME
+! h5pget_dset_no_attrs_hint_f
+!
+! PURPOSE
+! Gets the value of the "minimize dataset headers" value which creates
+! smaller dataset object headers when its set and no attributes are present.
+!
+! INPUTS
+! dcpl_id - Target dataset creation property list identifier.
+!
+! OUTPUTS
+! minimize - Value of the setting.
+! hdferr - error code:
+! 0 on success and -1 on failure
+!
+! AUTHOR
+! Dana Robinson
+! January 2019
+!
+! Fortran2003 Interface:
+ SUBROUTINE h5pget_dset_no_attrs_hint_f(dcpl_id, minimize, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: dcpl_id
+ LOGICAL , INTENT(OUT) :: minimize
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+ LOGICAL(C_BOOL) :: c_minimize
-END MODULE H5P
+ INTERFACE
+ INTEGER FUNCTION h5pget_dset_no_attrs_hint_c(dcpl_id, minimize) BIND(C, NAME='H5Pget_dset_no_attrs_hint')
+ IMPORT :: HID_T, C_BOOL
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN), VALUE :: dcpl_id
+ LOGICAL(C_BOOL), INTENT(OUT) :: minimize
+ END FUNCTION h5pget_dset_no_attrs_hint_c
+ END INTERFACE
+
+ hdferr = INT(h5pget_dset_no_attrs_hint_c(dcpl_id, c_minimize))
+ ! Transfer value of C C_BOOL type to Fortran LOGICAL
+ minimize = c_minimize
+ END SUBROUTINE h5pget_dset_no_attrs_hint_f
+
+!****s* H5P (F03)/h5pset_dset_no_attrs_hint_f_F03
+!
+! NAME
+! h5pset_dset_no_attrs_hint_f
+!
+! PURPOSE
+! Sets the value of the "minimize dataset headers" value which creates
+! smaller dataset object headers when its set and no attributes are present.
+!
+! INPUTS
+! dcpl_id - Target dataset creation property list identifier.
+! minimize - Value of the setting.
+!
+! OUTPUTS
+! hdferr - error code:
+! 0 on success and -1 on failure
+!
+! AUTHOR
+! Dana Robinson
+! January 2019
+!
+! Fortran2003 Interface:
+ SUBROUTINE h5pset_dset_no_attrs_hint_f(dcpl_id, minimize, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: dcpl_id
+ LOGICAL , INTENT(IN) :: minimize
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+ LOGICAL(C_BOOL) :: c_minimize
+
+ INTERFACE
+ INTEGER FUNCTION h5pset_dset_no_attrs_hint_c(dcpl_id, minimize) BIND(C, NAME='H5Pset_dset_no_attrs_hint')
+ IMPORT :: HID_T, C_BOOL
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN), VALUE :: dcpl_id
+ LOGICAL(C_BOOL), INTENT(IN), VALUE :: minimize
+ END FUNCTION h5pset_dset_no_attrs_hint_c
+ END INTERFACE
+
+ ! Transfer value of Fortran LOGICAL to C C_BOOL type
+ c_minimize = minimize
+
+ hdferr = INT(h5pset_dset_no_attrs_hint_c(dcpl_id, c_minimize))
+
+ END SUBROUTINE h5pset_dset_no_attrs_hint_f
+
+END MODULE H5P
diff --git a/fortran/src/H5Sf.c b/fortran/src/H5Sf.c
index 2eae0d9..96540f7 100644
--- a/fortran/src/H5Sf.c
+++ b/fortran/src/H5Sf.c
@@ -995,167 +995,6 @@ done:
}
-#ifdef NEW_HYPERSLAB_API
-/****if* H5Sf/h5scombine_hyperslab_c
- * NAME
- * h5scombine_hyperslab_c
- * PURPOSE
- * Call H5Scombine_hyperslab
- * INPUTS
- * space_id - identifier of the dataspace
- * operator - defines how the new selection is combined
- * start - offset of start of hyperslab
- * count - number of blocks included in the hyperslab
- * stride - hyperslab stride (interval between blocks)
- * block - size of block in the hyperslab
- * OUTPUTS
- * hyper_id - identifier for the new dataspace
- * RETURNS
- * 0 on success, -1 on failure
- * AUTHOR
- * Elena Pourmal
- * Monday, October 7, 2002
- * HISTORY
- *
- * SOURCE
-*/
-
-int_f
-h5scombine_hyperslab_c ( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block, hid_t_f *hyper_id)
-/******/
-{
- int ret_value = -1;
- hid_t c_space_id;
- hid_t c_hyper_id;
- hsize_t *c_start = NULL;
- hsize_t *c_count = NULL;
- hsize_t *c_stride = NULL;
- hsize_t *c_block = NULL;
-
- H5S_seloper_t c_op;
- herr_t status;
- int rank;
- int i;
-
- rank = H5Sget_simple_extent_ndims(*space_id);
- if (rank < 0 ) return ret_value;
- c_start = (hsize_t *)HDmalloc(sizeof(hsize_t)*rank);
- if (c_start == NULL) goto DONE;
-
- c_count = (hsize_t *)HDmalloc(sizeof(hsize_t)*rank);
- if (c_count == NULL) goto DONE;
-
- c_stride = (hsize_t *)HDmalloc(sizeof(hsize_t)*rank);
- if (c_stride == NULL) goto DONE;
-
- c_block = (hsize_t *)HDmalloc(sizeof(hsize_t)*rank);
- if (c_block == NULL) goto DONE;
-
-
- /*
- * Reverse dimensions due to C-FORTRAN storage order.
- */
-
- for (i=0; i < rank; i++) {
- int t= (rank - i) - 1;
- c_start[i] = (hsize_t)start[t];
- c_count[i] = (hsize_t)count[t];
- c_stride[i] = (hsize_t)stride[t];
- c_block[i] = (hsize_t)block[t];
- }
-
- c_op = (H5S_seloper_t)*op;
-
- c_space_id = (hid_t)*space_id;
- c_hyper_id = H5Scombine_hyperslab(c_space_id, c_op, c_start, c_stride, c_count, c_block);
- if ( c_hyper_id < 0 ) goto DONE;
- *hyper_id = (hid_t_f)c_hyper_id;
- ret_value = 0;
-DONE:
- if(c_start != NULL) HDfree(c_start);
- if(c_count != NULL) HDfree(c_count);
- if(c_stride!= NULL) HDfree(c_stride);
- if(c_block != NULL) HDfree(c_block);
- return ret_value;
-}
-/****if* H5Sf/h5scombine_select_c
- * NAME
- * h5scombine_select_c
- * PURPOSE
- * Call H5Scombine_ select
- * INPUTS
- * space1_id - identifier of the first dataspace
- * operator - defines how the new selection is combined
- * space2_id - identifier of the second dataspace
- * OUTPUTS
- * ds_id - identifier for the new dataspace
- * RETURNS
- * 0 on success, -1 on failure
- * AUTHOR
- * Elena Pourmal
- * Monday, October 7, 2002
- * HISTORY
- *
- * SOURCE
-*/
-
-int_f
-h5scombine_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id, hid_t_f *ds_id)
-/******/
-{
- int ret_value = -1;
- hid_t c_space1_id;
- hid_t c_space2_id;
- hid_t c_ds_id;
- H5S_seloper_t c_op;
-
- c_op = (H5S_seloper_t)*op;
-
- c_space1_id = (hid_t)*space1_id;
- c_space2_id = (hid_t)*space2_id;
- c_ds_id = H5Scombine_select(c_space1_id, c_op, c_space2_id);
- if ( c_ds_id < 0 ) return ret_value;
- *ds_id = (hid_t_f)c_ds_id;
- ret_value = 0;
- return ret_value;
-}
-/****if* H5Sf/h5sselect_select_c
- * NAME
- * h5sselect_select_c
- * PURPOSE
- * Call H5Sselect_ select
- * INPUTS
- * space1_id - identifier of the first dataspace to modify
- * operator - defines how the new selection is combined
- * space2_id - identifier of the second dataspace
- * RETURNS
- * 0 on success, -1 on failure
- * AUTHOR
- * Elena Pourmal
- * Monday, October 7, 2002
- * HISTORY
- *
- * SOURCE
-*/
-
-int_f
-h5sselect_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id)
-/******/
-{
- int ret_value = -1;
- hid_t c_space1_id;
- hid_t c_space2_id;
- H5S_seloper_t c_op;
-
- c_op = (H5S_seloper_t)*op;
-
- c_space1_id = (hid_t)*space1_id;
- c_space2_id = (hid_t)*space2_id;
- if( H5Sselect_select(c_space1_id, c_op, c_space2_id)< 0) return ret_value;
- ret_value = 0;
- return ret_value;
-}
-#endif /*NEW_HYPERSLAB_API*/
/****if* H5Sf/h5sget_select_type_c
* NAME
* h5sget_select_type_c
diff --git a/fortran/src/H5Sff.F90 b/fortran/src/H5Sff.F90
index 3434fba..3af7755 100644
--- a/fortran/src/H5Sff.F90
+++ b/fortran/src/H5Sff.F90
@@ -1275,310 +1275,6 @@ CONTAINS
DEALLOCATE(def_stride)
END SUBROUTINE h5sselect_hyperslab_f
-! !$!
-! !$!****s* H5S/h5scombine_hyperslab_f
-! !$!
-! !$! NAME
-! !$! h5scombine_hyperslab_f
-! !$!
-! !$! PURPOSE
-! !$! Combine a hyperslab selection with the current
-! !$! selection for a dataspace
-! !$!
-! !$! INPUTS
-! !$! space_id - dataspace of selection to use
-! !$! operator - flag, valid values are:
-! !$! H5S_SELECT_NOOP_F
-! !$! H5S_SELECT_SET_F
-! !$! H5S_SELECT_OR_F
-! !$! H5S_SELECT_AND_F
-! !$! H5S_SELECT_XOR_F
-! !$! H5S_SELECT_NOTB_F
-! !$! H5S_SELECT_NOTA_F
-! !$! H5S_SELECT_APPEND_F
-! !$! H5S_SELECT_PREPEND_F
-! !$! start - array with hyperslab offsets
-! !$! count - number of blocks included in the
-! !$! hyperslab
-! !$! OUTPUTS
-! !$! hyper_id - identifier for the new hyperslab
-! !$! hdferr: - error code
-! !$! Success: 0
-! !$! Failure: -1
-! !$! OPTIONAL PARAMETERS
-! !$! stride - array with hyperslab strides
-! !$! block - array with hyperslab block sizes
-! !$!
-! !$! AUTHOR
-! !$! Elena Pourmal
-! !$! October 7, 2002
-! !$!
-! !$! HISTORY
-! !$!
-! !$!
-! !$! NOTES
-! !$! Commented out until 1.6 ? 10/08/2002
-! !$!
-! !$! SOURCE
-! SUBROUTINE h5scombine_hyperslab_f(space_id, operator, start, count, &
-! hyper_id, hdferr, stride, block)
-! IMPLICIT NONE
-! INTEGER(HID_T), INTENT(IN) :: space_id ! Dataspace identifier
-! INTEGER, INTENT(IN) :: operator ! Flag, valid values are:
- ! H5S_SELECT_NOOP_F
- ! H5S_SELECT_SET_F
- ! H5S_SELECT_OR_F
- ! H5S_SELECT_AND_F
- ! H5S_SELECT_XOR_F
- ! H5S_SELECT_NOTB_F
- ! H5S_SELECT_NOTA_F
- ! H5S_SELECT_APPEND_F
- ! H5S_SELECT_PREPEND_F
- !
-! INTEGER(HSIZE_T), DIMENSION(*), INTENT(IN) :: start
- ! Starting coordinates of the hyperslab
-! INTEGER(HSIZE_T), DIMENSION(*), INTENT(IN) :: count
- ! Number of blocks to select
- ! from dataspace
-! INTEGER(HID_T), INTENT(OUT) :: hyper_id ! New hyperslab identifier
-! INTEGER, INTENT(OUT) :: hdferr ! Error code
-! INTEGER(HSIZE_T), DIMENSION(:), OPTIONAL, INTENT(IN) :: stride
- ! Array of how many elements to move
- ! in each direction
-! INTEGER(HSIZE_T), DIMENSION(:), OPTIONAL, INTENT(IN) :: block
- ! Sizes of element block
-! INTEGER(HSIZE_T), DIMENSION(:), ALLOCATABLE :: def_block
-! INTEGER(HSIZE_T), DIMENSION(:), ALLOCATABLE :: def_stride
-! INTEGER :: rank
-! INTEGER :: error1, error2
-
-! INTERFACE
-! INTEGER FUNCTION h5scombine_hyperslab_c(space_id, operator, &
-! start, count, stride, block, hyper_id)
-! USE H5GLOBAL
-! !DEC$IF DEFINED(HDF5F90_WINDOWS)
-! !DEC$ATTRIBUTES C,reference,decorate,alias:'H5SCOMBINE_HYPERSLAB_C'::h5scombine_hyperslab_c
-! !DEC$ENDIF
-! INTEGER(HID_T), INTENT(IN) :: space_id
-! INTEGER, INTENT(IN) :: operator
-! INTEGER(HSIZE_T), DIMENSION(*), INTENT(IN) :: start
-! INTEGER(HSIZE_T), DIMENSION(*), INTENT(IN) :: count
-! INTEGER(HSIZE_T), DIMENSION(*), OPTIONAL, INTENT(IN) :: stride
-! INTEGER(HSIZE_T), DIMENSION(*), OPTIONAL, INTENT(IN) :: block
-! INTEGER(HID_T), INTENT(OUT) :: hyper_id
-! END FUNCTION h5scombine_hyperslab_c
-! END INTERFACE
-
-! if (present(stride).and. present(block)) then
-! hdferr = h5scombine_hyperslab_c(space_id, operator, start, count, &
-! stride, block, hyper_id)
-! return
-! endif
- ! Case of optional parameters.
- !
- ! Find the rank of the dataspace to allocate memory for
- ! default stride and block arrays.
- !
-! CALL h5sget_simple_extent_ndims_f(space_id, rank, hdferr)
-! if( hdferr .EQ. -1) return
- !
-! if (present(stride).and. .not.present(block)) then
-! allocate(def_block(rank), stat=error1)
-! if (error1.NE.0) then
-! hdferr = -1
-! return
-! endif
-! def_block = 1
-! hdferr = h5scombine_hyperslab_c(space_id, operator, start, count, &
-! stride, def_block, hyper_id)
-! deallocate(def_block)
-! return
-! endif
-
-! if (.not.present(stride).and. present(block)) then
-! allocate(def_stride(rank), stat=error2)
-! if (error2.NE.0) then
-! hdferr = -1
-! return
-! endif
-! def_stride = 1
-! hdferr = h5scombine_hyperslab_c(space_id, operator, start, count, &
-! def_stride, block, hyper_id)
-! deallocate(def_stride)
-! return
-! endif
-! allocate(def_block(rank), stat=error1)
-! allocate(def_stride(rank), stat=error2)
-! if ((error1.NE.0) .OR. (error2.NE.0)) then
-! hdferr = -1
-! return
-! endif
-! def_block = 1
-! def_stride = 1
-! hdferr = h5scombine_hyperslab_c(space_id, operator, start, count, &
-! def_stride, def_block, hyper_id)
-! deallocate(def_block)
-! deallocate(def_stride)
-
-! END SUBROUTINE h5scombine_hyperslab_f
-
-! !$!
-! !$!****s* H5S/
-! !$!
-! !$! NAME
-! !$! h5scombine_select_f
-! !$!
-! !$! PURPOSE
-! !$! Combine two hyperslab selections with an operation
-! !$! and return a dataspace with resulting selection.
-! !$!
-! !$! INPUTS
-! !$! space1_id - dataspace of selection to use
-! !$! operator - flag, valid values are:
-! !$! H5S_SELECT_NOOP_F
-! !$! H5S_SELECT_SET_F
-! !$! H5S_SELECT_OR_F
-! !$! H5S_SELECT_AND_F
-! !$! H5S_SELECT_XOR_F
-! !$! H5S_SELECT_NOTB_F
-! !$! H5S_SELECT_NOTA_F
-! !$! H5S_SELECT_APPEND_F
-! !$! H5S_SELECT_PREPEND_F
-! !$! space2_id - dataspace of selection to use
-! !$! OUTPUTS
-! !$! ds_id - idataspace identifier with the new selection
-! !$! hdferr: - error code
-! !$! Success: 0
-! !$! Failure: -1
-! !$! OPTIONAL PARAMETERS - NONE
-! !$!
-! !$! AUTHOR
-! !$! Elena Pourmal
-! !$! October 7, 2002
-! !$!
-! !$! HISTORY
-! !$!
-! !$!
-! !$! NOTES commented out until 1.6 release(?) 10/08/2002
-! !$!
-
-! ! SOURCE
-! !$ SUBROUTINE h5scombine_select_f(space1_id, operator, space2_id, &
-! ds_id, hdferr)
-! IMPLICIT NONE
-! INTEGER(HID_T), INTENT(IN) :: space1_id ! First dataspace identifier
-! INTEGER(HID_T), INTENT(IN) :: space2_id ! Second dataspace identifier
-! INTEGER, INTENT(IN) :: operator ! Flag, valid values are:
- ! H5S_SELECT_NOOP_F
- ! H5S_SELECT_SET_F
- ! H5S_SELECT_OR_F
- ! H5S_SELECT_AND_F
- ! H5S_SELECT_XOR_F
- ! H5S_SELECT_NOTB_F
- ! H5S_SELECT_NOTA_F
- ! H5S_SELECT_APPEND_F
- ! H5S_SELECT_PREPEND_F
- !
-! INTEGER(HID_T), INTENT(OUT) :: ds_id ! New dataspace identifier
-! INTEGER, INTENT(OUT) :: hdferr ! Error code
-!
-! INTERFACE
-! INTEGER FUNCTION h5scombine_select_c(space1_id, operator, &
-! space2_id, ds_id)
-! USE H5GLOBAL
-! !DEC$IF DEFINED(HDF5F90_WINDOWS)
-! !DEC$ATTRIBUTES C,reference,decorate,alias:'H5SCOMBINE_SELECT_C'::h5scombine_select_c
-! !DEC$ENDIF
-! INTEGER(HID_T), INTENT(IN) :: space1_id
-! INTEGER(HID_T), INTENT(IN) :: space2_id
-! INTEGER, INTENT(IN) :: operator
-! INTEGER(HID_T), INTENT(OUT) :: ds_id
-! END FUNCTION h5scombine_select_c
-! END INTERFACE
-
-! hdferr = h5scombine_select_c(space1_id, operator, space2_id, &
-! ds_id)
-! return
-
-! END SUBROUTINE h5scombine_select_f
-
-! !$!
-! !$!****s* H5S/
-! !$!
-! !$! NAME
-! !$! h5sselect_select_f
-! !$!
-! !$! PURPOSE
-! !$! Refine a hyperslab selection with an operation
-! !$! using second hyperslab
-! !$!
-! !$! INPUTS
-! !$! space1_id - dataspace of selection to modify
-! !$! operator - flag, valid values are:
-! !$! H5S_SELECT_NOOP_F
-! !$! H5S_SELECT_SET_F
-! !$! H5S_SELECT_OR_F
-! !$! H5S_SELECT_AND_F
-! !$! H5S_SELECT_XOR_F
-! !$! H5S_SELECT_NOTB_F
-! !$! H5S_SELECT_NOTA_F
-! !$! H5S_SELECT_APPEND_F
-! !$! H5S_SELECT_PREPEND_F
-! !$! space2_id - dataspace of selection to use
-! !$!
-! !$! OUTPUTS
-! !$! hdferr: - error code
-! !$! Success: 0
-! !$! Failure: -1
-! !$! OPTIONAL PARAMETERS - NONE
-! !$!
-! !$! AUTHOR
-! !$! Elena Pourmal
-! !$! October 7, 2002
-! !$!
-! !$! HISTORY
-! !$!
-! !$!
-! !$! NOTESCommented out until 1.6 release(?) 10/08/2002 EIP
-! !$!
-
-! ! SOURCE
-! SUBROUTINE h5sselect_select_f(space1_id, operator, space2_id, &
-! hdferr)
-! IMPLICIT NONE
-! INTEGER(HID_T), INTENT(INOUT) :: space1_id ! Dataspace identifier to
- ! modify
-! INTEGER(HID_T), INTENT(IN) :: space2_id ! Second dataspace identifier
-! INTEGER, INTENT(IN) :: operator ! Flag, valid values are:
- ! H5S_SELECT_NOOP_F
- ! H5S_SELECT_SET_F
- ! H5S_SELECT_OR_F
- ! H5S_SELECT_AND_F
- ! H5S_SELECT_XOR_F
- ! H5S_SELECT_NOTB_F
- ! H5S_SELECT_NOTA_F
- ! H5S_SELECT_APPEND_F
- ! H5S_SELECT_PREPEND_F
- !
-! INTEGER, INTENT(OUT) :: hdferr ! Error code
-
-! INTERFACE
-! INTEGER FUNCTION h5sselect_select_c(space1_id, operator, &
-! space2_id)
-! USE H5GLOBAL
-! !DEC$IF DEFINED(HDF5F90_WINDOWS)
-! !DEC$ATTRIBUTES C,reference,decorate,alias:'H5SSELECT_SELECT_C'::h5sselect_select_c
-! !DEC$ENDIF
-! INTEGER(HID_T), INTENT(INOUT) :: space1_id
-! INTEGER(HID_T), INTENT(IN) :: space2_id
-! INTEGER, INTENT(IN) :: operator
-! END FUNCTION h5sselect_select_c
-! END INTERFACE
-
-! hdferr = h5sselect_select_c(space1_id, operator, space2_id)
-! return
-
-! END SUBROUTINE h5sselect_select_f
!
!****s* H5S/h5sget_select_type_f
diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c
index 352ffab..69ba8b3 100644
--- a/fortran/src/H5_f.c
+++ b/fortran/src/H5_f.c
@@ -556,6 +556,17 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
h5o_flags[24] = (int_f)H5O_TYPE_DATASET; /* Object is a dataset */
h5o_flags[25] = (int_f)H5O_TYPE_NAMED_DATATYPE; /* Object is a named data type */
h5o_flags[26] = (int_f)H5O_TYPE_NTYPES; /* Number of different object types */
+
+/* Flags for H5Oget_info.
+ * These flags determine which fields will be filled in in the H5O_info_t
+ * struct.
+ */
+ h5o_flags[27] = (int_f)H5O_INFO_ALL; /* (H5O_INFO_BASIC|H5O_INFO_TIME|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR|H5O_INFO_META_SIZE) */
+ h5o_flags[28] = (int_f)H5O_INFO_BASIC; /* Fill in the fileno, addr, type, and rc fields */
+ h5o_flags[29] = (int_f)H5O_INFO_TIME; /* Fill in the atime, mtime, ctime, and btime fields */
+ h5o_flags[30] = (int_f)H5O_INFO_NUM_ATTRS; /* Fill in the num_attrs field */
+ h5o_flags[31] = (int_f)H5O_INFO_HDR; /* Fill in the hdr field */
+ h5o_flags[32] = (int_f)H5O_INFO_META_SIZE; /* Fill in the meta_size field */
/*
* H5P flags
*/
diff --git a/fortran/src/H5_ff.F90 b/fortran/src/H5_ff.F90
index f63e734..84529e4 100644
--- a/fortran/src/H5_ff.F90
+++ b/fortran/src/H5_ff.F90
@@ -98,8 +98,8 @@ MODULE H5LIB
!
! H5O flags declaration
!
- INTEGER, PARAMETER :: H5O_FLAGS_LEN = 27
- INTEGER, DIMENSION(1:H5O_FLAGS_LEN) :: H5o_flags
+ INTEGER, PARAMETER :: H5O_FLAGS_LEN = 33
+ INTEGER, DIMENSION(1:H5O_FLAGS_LEN) :: H5O_flags
!
! H5P flags declaration
!
@@ -139,8 +139,8 @@ MODULE H5LIB
!
INTEGER, PARAMETER :: H5LIB_FLAGS_LEN = 2
INTEGER, DIMENSION(1:H5LIB_FLAGS_LEN) :: H5LIB_flags
-
- PUBLIC :: h5open_f, h5close_f, h5get_libversion_f, h5dont_atexit_f, h5kind_to_type, h5offsetof
+
+ PUBLIC :: h5open_f, h5close_f, h5get_libversion_f, h5dont_atexit_f, h5kind_to_type, h5offsetof, h5gmtime
PUBLIC :: h5garbage_collect_f, h5check_version_f
CONTAINS
@@ -488,7 +488,13 @@ CONTAINS
H5O_TYPE_GROUP_F = h5o_flags(24)
H5O_TYPE_DATASET_F = h5o_flags(25)
H5O_TYPE_NAMED_DATATYPE_F = h5o_flags(26)
- H5O_TYPE_NTYPES_F = h5o_flags(27)
+ H5O_TYPE_NTYPES_F = h5o_flags(27)
+ H5O_INFO_ALL_F = h5o_flags(28)
+ H5O_INFO_BASIC_F = h5o_flags(29)
+ H5O_INFO_TIME_F = h5o_flags(30)
+ H5O_INFO_NUM_ATTRS_F = h5o_flags(31)
+ H5O_INFO_HDR_F = h5o_flags(32)
+ H5O_INFO_META_SIZE_F = h5o_flags(33)
!
! H5P flags
!
@@ -898,4 +904,62 @@ CONTAINS
END FUNCTION h5offsetof
+!****f* H5LIB_PROVISIONAL/h5gmtime
+!
+! NAME
+! h5gmtime
+!
+! PURPOSE
+! Convert time_t structure (C) to Fortran DATE AND TIME storage format.
+!
+! Inputs:
+! stdtime_t - Object of type time_t that contains a time value
+!
+! Outputs:
+! datetime - A date/time array using Fortran conventions:
+! datetime(1) = year
+! datetime(2) = month
+! datetime(3) = day
+! datetime(4) = 0 ! time is expressed as UTC (or GMT timezone) */
+! datetime(5) = hour
+! datetime(6) = minute
+! datetime(7) = second
+! datetime(8) = millisecond -- not available, assigned - HUGE(0)
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! January, 2019
+!
+! Fortran Interface:
+ FUNCTION h5gmtime(stdtime_t)
+ IMPLICIT NONE
+ INTEGER(KIND=TIME_T), INTENT(IN) :: stdtime_t
+ INTEGER, DIMENSION(1:8) :: h5gmtime
+!*****
+ TYPE(C_PTR) :: cptr
+ INTEGER(C_INT), DIMENSION(:), POINTER :: c_time
+
+ INTERFACE
+ FUNCTION gmtime(stdtime_t) BIND(C, NAME='gmtime')
+ IMPORT :: TIME_T, C_PTR
+ IMPLICIT NONE
+ INTEGER(KIND=TIME_T) :: stdtime_t
+ TYPE(C_PTR) :: gmtime
+ END FUNCTION gmtime
+ END INTERFACE
+
+ cptr = gmtime(stdtime_t)
+ CALL C_F_POINTER(cptr, c_time, [9])
+
+ h5gmtime(1) = INT(c_time(6)+1900) ! year starts at 1900
+ h5gmtime(2) = INT(c_time(5)+1) ! month starts at 0 in C
+ h5gmtime(3) = INT(c_time(4)) ! day
+ h5gmtime(4) = 0 ! time is expressed as UTC (or GMT timezone)
+ h5gmtime(5) = INT(c_time(3)) ! hour
+ h5gmtime(6) = INT(c_time(2)) ! minute
+ h5gmtime(7) = INT(c_time(1)) ! second
+ h5gmtime(8) = -32767 ! millisecond is not available, assign it -HUGE(0)
+
+ END FUNCTION h5gmtime
+
END MODULE H5LIB
diff --git a/fortran/src/H5f90global.F90 b/fortran/src/H5f90global.F90
index 078778a..b705cc1 100644
--- a/fortran/src/H5f90global.F90
+++ b/fortran/src/H5f90global.F90
@@ -493,6 +493,13 @@ MODULE H5GLOBAL
!DEC$ATTRIBUTES DLLEXPORT :: H5O_TYPE_DATASET_F
!DEC$ATTRIBUTES DLLEXPORT :: H5O_TYPE_NAMED_DATATYPE_F
!DEC$ATTRIBUTES DLLEXPORT :: H5O_TYPE_NTYPES_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_ALL_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_BASIC_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_TIME_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_NUM_ATTRS_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_HDR_F
+ !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_META_SIZE_F
+ !
!DEC$endif
INTEGER :: H5O_COPY_SHALLOW_HIERARCHY_F ! *** THESE VARIABLES DO
@@ -522,6 +529,12 @@ MODULE H5GLOBAL
INTEGER :: H5O_TYPE_DATASET_F
INTEGER :: H5O_TYPE_NAMED_DATATYPE_F
INTEGER :: H5O_TYPE_NTYPES_F
+ INTEGER :: H5O_INFO_ALL_F
+ INTEGER :: H5O_INFO_BASIC_F
+ INTEGER :: H5O_INFO_TIME_F
+ INTEGER :: H5O_INFO_NUM_ATTRS_F
+ INTEGER :: H5O_INFO_HDR_F
+ INTEGER :: H5O_INFO_META_SIZE_F
!
! H5P flags declaration
!
diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h
index 0884eb6..fada004 100644
--- a/fortran/src/H5f90proto.h
+++ b/fortran/src/H5f90proto.h
@@ -120,9 +120,6 @@ H5_FCDLL int_f h5sset_extent_none_c( hid_t_f *space_id );
H5_FCDLL int_f h5sselect_hyperslab_c( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block);
H5_FCDLL int_f h5sget_select_type_c( hid_t_f *space_id , int_f *op);
H5_FCDLL int_f h5sselect_elements_c( hid_t_f *space_id , int_f *op, size_t_f *nelements, hsize_t_f *coord);
-H5_FCDLL int_f h5scombine_hyperslab_c( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block, hid_t_f *hyper_id);
-H5_FCDLL int_f h5scombine_select_c( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id, hid_t_f *ds_id);
-H5_FCDLL int_f h5sselect_select_c( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id);
H5_FCDLL int_f h5sdecode_c( _fcd buf, hid_t_f *obj_id );
H5_FCDLL int_f h5sencode_c(_fcd buf, hid_t_f *obj_id, size_t_f *nalloc );
H5_FCDLL int_f h5sextent_equal_c( hid_t_f * space1_id, hid_t_f *space2_id, hid_t_f *c_equal);
@@ -314,14 +311,14 @@ H5_FCDLL int_f h5oclose_c(hid_t_f *object_id );
H5_FCDLL int_f h5oopen_by_addr_c(hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id);
H5_FCDLL int_f h5olink_c(hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen,
hid_t_f *lcpl_id, hid_t_f *lapl_id);
-H5_FCDLL int_f h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data);
+H5_FCDLL int_f h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data, int_f *fields);
H5_FCDLL int_f h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order,
- H5O_iterate_t op, void *op_data, hid_t_f *lapl_id );
-H5_FCDLL int_f h5oget_info_c(hid_t_f *object_id, H5O_info_t_f *object_info);
+ H5O_iterate_t op, void *op_data, hid_t_f *lapl_id, int_f *fields );
+H5_FCDLL int_f h5oget_info_c(hid_t_f *object_id, H5O_info_t_f *object_info, int_f *fields);
H5_FCDLL int_f h5oget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *namelen,
- int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info);
+ int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info, int_f *fields);
H5_FCDLL int_f h5oget_info_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id,
- H5O_info_t_f *object_info);
+ H5O_info_t_f *object_info, int_f *fields);
H5_FCDLL int_f h5ocopy_c(hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len,
hid_t_f *dst_loc_id, _fcd dst_name, size_t_f *dst_name_len,
hid_t_f *ocpypl_id, hid_t_f *lcpl_id );
diff --git a/fortran/src/H5match_types.c b/fortran/src/H5match_types.c
index 7e0b7e8..57f7dda 100644
--- a/fortran/src/H5match_types.c
+++ b/fortran/src/H5match_types.c
@@ -191,6 +191,8 @@ int main(void)
}
if(sizeof(size_t) == IntKinds_SizeOf[i])
writeTypedef("size_t", "size_t", IntKinds[i]);
+ if(sizeof(time_t) == IntKinds_SizeOf[i])
+ writeTypedef("time_t", "time_t", IntKinds[i]);
if(sizeof(hsize_t) == IntKinds_SizeOf[i])
writeTypedef("hsize_t", "hsize_t", IntKinds[i]);
}
@@ -306,6 +308,17 @@ int main(void)
return -1;
}
+ /* time_t */
+ for(i=0;i< FORTRAN_NUM_INTEGER_KINDS;i++) {
+ if(IntKinds_SizeOf[i] == H5_SIZEOF_TIME_T) {
+ writeToFiles("time_t","TIME_T", "time_t_f", IntKinds[i]);
+ break;
+ }
+ if(i == (FORTRAN_NUM_INTEGER_KINDS-1) )
+ /* Error: couldn't find a size for time_t */
+ return -1;
+ }
+
/* int */
writeToFiles("int","Fortran_INTEGER", "int_f", H5_FORTRAN_NATIVE_INTEGER_KIND);
diff --git a/fortran/src/hdf5_fortrandll.def.in b/fortran/src/hdf5_fortrandll.def.in
index 2edba5a..a99efad 100644
--- a/fortran/src/hdf5_fortrandll.def.in
+++ b/fortran/src/hdf5_fortrandll.def.in
@@ -8,6 +8,7 @@ H5LIB_mp_H5GARBAGE_COLLECT_F
H5LIB_mp_H5DONT_ATEXIT_F
H5LIB_mp_H5KIND_TO_TYPE
H5LIB_mp_H5OFFSETOF
+H5LIB_mp_H5GMTIME
; H5A
H5A_mp_H5AWRITE_CHAR_SCALAR
H5A_mp_H5AREAD_CHAR_SCALAR
@@ -99,6 +100,8 @@ H5F_mp_H5FIS_HDF5_F
H5F_mp_H5FGET_NAME_F
H5F_mp_H5FGET_FILESIZE_F
H5F_mp_H5FGET_FILE_IMAGE_F
+H5F_mp_H5FGET_DSET_NO_ATTRS_HINT_F
+H5F_mp_H5FSET_DSET_NO_ATTRS_HINT_F
; H5G
H5G_mp_H5GOPEN_F
H5G_mp_H5GCREATE_F
@@ -329,6 +332,8 @@ H5P_mp_H5PGET_VIRTUAL_VSPACE_F
H5P_mp_H5PGET_VIRTUAL_SRCSPACE_F
H5P_mp_H5PGET_VIRTUAL_FILENAME_F
H5P_mp_H5PGET_VIRTUAL_DSETNAME_F
+H5P_mp_H5PGET_DSET_NO_ATTRS_HINT_F
+H5P_mp_H5PSET_DSET_NO_ATTRS_HINT_F
; Parallel
@H5_NOPAREXP@H5P_mp_H5PSET_FAPL_MPIO_F
@H5_NOPAREXP@H5P_mp_H5PGET_FAPL_MPIO_F