[svn-r19543] Description:

	Bring r19411:19542 from trunk to revise_chunks branch.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, w/threadsafe, in production mode
        Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
        Mac OS X/32 10.6.4 (amazon) in debug mode
        Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
        Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode

12 files changed, 187 insertions, 97 deletions

diff --git a/fortran/Makefile.in b/fortran/Makefile.in
index 715dbab..4e7f208 100644
--- a/fortran/Makefile.in
+++ b/fortran/Makefile.in
@@ -352,14 +352,24 @@ LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
 LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
 LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 
+# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below  
+# has been removed. According to the official description of DESTDIR by Gnu at 
+# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is 
+# prepended to the normal and complete install path that it precedes for the 
+# purpose of installing in a temporary directory which is useful for building 
+# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another 
+# '/' at the beginning of the normal install path.  When DESTDIR is empty the  
+# path then begins with '//', which is incorrect and causes problems at least for 
+# Cygwin.   
+
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc
-H5CC_PP = $(bindir)/h5pcc
-H5FC = $(bindir)/h5fc
-H5FC_PP = $(bindir)/h5pfc
-H5CPP = $(bindir)/h5c++
+H5CC = ${DESTDIR}$(bindir)/h5cc
+H5CC_PP = ${DESTDIR}$(bindir)/h5pcc
+H5FC = ${DESTDIR}$(bindir)/h5fc
+H5FC_PP = ${DESTDIR}$(bindir)/h5pfc
+H5CPP = ${DESTDIR}$(bindir)/h5c++
 ACLOCAL_AMFLAGS = "-I m4"
 
 # The trace script; this is used on source files from the C library to
diff --git a/fortran/examples/CMakeLists.txt b/fortran/examples/CMakeLists.txt
index 04e6303..6fe6cc7 100644
--- a/fortran/examples/CMakeLists.txt
+++ b/fortran/examples/CMakeLists.txt
@@ -39,12 +39,12 @@ FOREACH (example ${examples})
   ADD_EXECUTABLE (f90_ex_${example} ${HDF5_F90_EXAMPLES_SOURCE_DIR}/${example}.f90)
   H5_NAMING (f90_ex_${example})
   TARGET_FORTRAN_WIN_PROPERTIES (f90_ex_${example})
-  IF (WIN32)
+  IF (WIN32 AND NOT CYGWIN)
     SET_PROPERTY (TARGET f90_ex_${example} 
         APPEND PROPERTY COMPILE_DEFINITIONS 
   	      HDF5F90_WINDOWS
     )
-  ENDIF (WIN32)
+  ENDIF (WIN32 AND NOT CYGWIN)
   TARGET_LINK_LIBRARIES (f90_ex_${example}
       ${HDF5_F90_LIB_TARGET}
       ${HDF5_LIB_TARGET}
@@ -56,12 +56,12 @@ IF (H5_HAVE_PARALLEL)
   ADD_EXECUTABLE (f90_ex_ph5example ${HDF5_F90_EXAMPLES_SOURCE_DIR}/ph5example.f90)
   H5_NAMING (f90_ex_ph5example)
   TARGET_FORTRAN_WIN_PROPERTIES (f90_ex_ph5example)
-  IF (WIN32)
+  IF (WIN32 AND NOT CYGWIN)
     SET_PROPERTY (TARGET f90_ex_ph5example 
         APPEND PROPERTY COMPILE_DEFINITIONS 
           HDF5F90_WINDOWS
     )
-  ENDIF (WIN32)
+  ENDIF (WIN32 AND NOT CYGWIN)
   TARGET_LINK_LIBRARIES (f90_ex_ph5example
       ${HDF5_F90_LIB_TARGET}
       ${HDF5_LIB_TARGET}
diff --git a/fortran/examples/Makefile.am b/fortran/examples/Makefile.am
index f27f7ff..57a8f94 100644
--- a/fortran/examples/Makefile.am
+++ b/fortran/examples/Makefile.am
@@ -65,7 +65,8 @@ $(EXTRA_PROG): $(H5FC)
 endif
 
 # Tell automake how to install examples
-EXAMPLEDIR=${DESTDIR}/$(exec_prefix)/share/hdf5_examples/fortran
+# Note: no '/' after DESTDIR.  Explanation in commence.am
+EXAMPLEDIR=${DESTDIR}$(exec_prefix)/share/hdf5_examples/fortran
 
 # List dependencies for each example.  Normally, automake would take
 # care of this for us, but if we tell automake about the programs it
diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in
index 1862e2f..5d76c0b 100644
--- a/fortran/examples/Makefile.in
+++ b/fortran/examples/Makefile.in
@@ -315,14 +315,24 @@ LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
 LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
 LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 
+# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below  
+# has been removed. According to the official description of DESTDIR by Gnu at 
+# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is 
+# prepended to the normal and complete install path that it precedes for the 
+# purpose of installing in a temporary directory which is useful for building 
+# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another 
+# '/' at the beginning of the normal install path.  When DESTDIR is empty the  
+# path then begins with '//', which is incorrect and causes problems at least for 
+# Cygwin.   
+
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc
-H5CC_PP = $(bindir)/h5pcc
-H5FC = $(bindir)/h5fc
-H5FC_PP = $(bindir)/h5pfc
-H5CPP = $(bindir)/h5c++
+H5CC = ${DESTDIR}$(bindir)/h5cc
+H5CC_PP = ${DESTDIR}$(bindir)/h5pcc
+H5FC = ${DESTDIR}$(bindir)/h5fc
+H5FC_PP = ${DESTDIR}$(bindir)/h5pfc
+H5CPP = ${DESTDIR}$(bindir)/h5c++
 ACLOCAL_AMFLAGS = "-I m4"
 
 # The trace script; this is used on source files from the C library to
@@ -360,7 +370,8 @@ INSTALL_SCRIPT_FILES = run-fortran-ex.sh
 FORTRAN_API = yes
 
 # Tell automake how to install examples
-EXAMPLEDIR = ${DESTDIR}/$(exec_prefix)/share/hdf5_examples/fortran
+# Note: no '/' after DESTDIR.  Explanation in commence.am
+EXAMPLEDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/fortran
 
 # Assume that all tests in this directory are examples, and tell
 # conclude.am when to build them.
@@ -645,7 +656,8 @@ uninstall-local:
 install-examples: $(EXAMPLEDIR) $(INSTALL_FILES)
 	@for f in X $(INSTALL_FILES); do                                     \
 	  if test $$f != X; then                                             \
-	    (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);\
+	    (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);    \
+            chmod a-x $(EXAMPLEDIR)/$$f;                                     \
 	  fi;                                                                \
 	done
 	@for f in X $(INSTALL_SCRIPT_FILES); do                                   \
diff --git a/fortran/examples/run-fortran-ex.sh.in b/fortran/examples/run-fortran-ex.sh.in
index 1564537..b29eaaf 100755
--- a/fortran/examples/run-fortran-ex.sh.in
+++ b/fortran/examples/run-fortran-ex.sh.in
@@ -33,7 +33,8 @@ EXIT_SUCCESS=0
 EXIT_FAILURE=1
 
 # Where the tool is installed.
-prefix="${prefix:-${DESTDIR}/@prefix@}"
+# Note: no '/' after DESTDIR.  Explanation in commence.am
+prefix="${prefix:-${DESTDIR}@prefix@}"
 PARALLEL=@PARALLEL@             # Am I in parallel mode?
 AR="@AR@"
 RANLIB="@RANLIB@"
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index c2ca1e6..2af57c1 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -25,20 +25,18 @@ ELSE (FORTRAN_HAVE_SIZEOF)
       ${HDF5_F90_SRC_SOURCE_DIR}/H5test_kind.f90
   )
 ENDIF (FORTRAN_HAVE_SIZEOF)
-IF (WIN32)
-  IF (MSVC)
-    IF (BUILD_SHARED_LIBS)
-      SET_TARGET_PROPERTIES (H5test_FortranHavekind
-          PROPERTIES
-              COMPILE_FLAGS "/MT"
-      )
-    ENDIF (BUILD_SHARED_LIBS)
+IF (WIN32 AND MSVC)
+  IF (BUILD_SHARED_LIBS)
     SET_TARGET_PROPERTIES (H5test_FortranHavekind
         PROPERTIES
-            LINK_FLAGS "/SUBSYSTEM:CONSOLE"
+            COMPILE_FLAGS "/MT"
     )
-  ENDIF (MSVC)
-ENDIF (WIN32)
+  ENDIF (BUILD_SHARED_LIBS)
+  SET_TARGET_PROPERTIES (H5test_FortranHavekind
+      PROPERTIES
+          LINK_FLAGS "/SUBSYSTEM:CONSOLE"
+  )
+ENDIF (WIN32 AND MSVC)
 SET_TARGET_PROPERTIES (H5test_FortranHavekind PROPERTIES LINKER_LANGUAGE Fortran)
 
 SET (CMD ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}${CFG_INIT}/H5test_FortranHavekind${EXE_EXT})
@@ -53,20 +51,18 @@ ADD_CUSTOM_COMMAND (
 ADD_EXECUTABLE (H5fortran_detect
     ${HDF5_F90_BINARY_DIR}/H5fortran_detect.f90
 )
-IF (WIN32)
-  IF (MSVC)
-    IF (BUILD_SHARED_LIBS)
-      SET_TARGET_PROPERTIES (H5fortran_detect
-          PROPERTIES
-              COMPILE_FLAGS "/MT"
-      )
-    ENDIF (BUILD_SHARED_LIBS)
+IF (WIN32 AND MSVC)
+  IF (BUILD_SHARED_LIBS)
     SET_TARGET_PROPERTIES (H5fortran_detect
         PROPERTIES
-            LINK_FLAGS "/SUBSYSTEM:CONSOLE"
+            COMPILE_FLAGS "/MT"
     )
-  ENDIF (MSVC)
-ENDIF (WIN32)
+  ENDIF (BUILD_SHARED_LIBS)
+  SET_TARGET_PROPERTIES (H5fortran_detect
+      PROPERTIES
+          LINK_FLAGS "/SUBSYSTEM:CONSOLE"
+  )
+ENDIF (WIN32 AND MSVC)
 SET_TARGET_PROPERTIES (H5test_FortranHavekind PROPERTIES LINKER_LANGUAGE Fortran)
 
 SET (CMD ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}${CFG_INIT}/H5fortran_detect${EXE_EXT})
@@ -188,7 +184,7 @@ ENDIF (H5_HAVE_PARALLEL)
 # Add Main fortran library
 #-----------------------------------------------------------------------------
 ADD_LIBRARY (${HDF5_F90_LIB_TARGET} ${LIB_TYPE} ${f90_F_SRCS})
-IF (WIN32)
+IF (WIN32 AND NOT CYGWIN)
   IF (BUILD_SHARED_LIBS)
     SET_PROPERTY (TARGET ${HDF5_F90_LIB_TARGET}
 	    APPEND PROPERTY COMPILE_DEFINITIONS
@@ -206,7 +202,7 @@ IF (WIN32)
       APPEND PROPERTY COMPILE_DEFINITIONS
   	    HDF5F90_WINDOWS
   )
-ENDIF (WIN32)
+ENDIF (WIN32 AND NOT CYGWIN)
 SET_TARGET_PROPERTIES (${HDF5_F90_LIB_TARGET} PROPERTIES LINKER_LANGUAGE Fortran)
 TARGET_LINK_LIBRARIES (${HDF5_F90_LIB_TARGET} ${HDF5_F90_C_LIB_TARGET} ${HDF5_LIB_TARGET})
 SET_GLOBAL_VARIABLE (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_F90_LIB_TARGET}")
@@ -223,7 +219,7 @@ INSTALL (
         ${HDF5_F90_BINARY_DIR}/H5f90i_gen.h
         ${HDF5_F90_BINARY_DIR}/H5fortran_types.f90
     DESTINATION 
-        include/fortran 
+        ${HDF5_INSTALL_INCLUDE_DIR}/fortran 
     COMPONENT 
         fortheaders
 )
@@ -232,7 +228,7 @@ INSTALL (
     DIRECTORY
         ${CMAKE_Fortran_MODULE_DIRECTORY}/\${BUILD_TYPE}/
     DESTINATION
-        include/fortran
+        ${HDF5_INSTALL_INCLUDE_DIR}/fortran
     COMPONENT
         fortheaders
 )
@@ -247,8 +243,8 @@ IF (HDF5_EXPORTED_TARGETS)
           ${HDF5_F90_LIB_TARGET}
       EXPORT
           ${HDF5_EXPORTED_TARGETS}
-      LIBRARY DESTINATION lib COMPONENT fortlibraries
-      ARCHIVE DESTINATION lib COMPONENT fortlibraries
-      RUNTIME DESTINATION bin COMPONENT fortlibraries
+      LIBRARY DESTINATION ${HDF5_INSTALL_LIB_DIR} COMPONENT fortlibraries
+      ARCHIVE DESTINATION ${HDF5_INSTALL_LIB_DIR} COMPONENT fortlibraries
+      RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT fortlibraries
   )
 ENDIF (HDF5_EXPORTED_TARGETS)
diff --git a/fortran/src/Makefile.in b/fortran/src/Makefile.in
index b240a7a..cbb002b 100644
--- a/fortran/src/Makefile.in
+++ b/fortran/src/Makefile.in
@@ -404,14 +404,24 @@ LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
 LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
 LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 
+# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below  
+# has been removed. According to the official description of DESTDIR by Gnu at 
+# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is 
+# prepended to the normal and complete install path that it precedes for the 
+# purpose of installing in a temporary directory which is useful for building 
+# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another 
+# '/' at the beginning of the normal install path.  When DESTDIR is empty the  
+# path then begins with '//', which is incorrect and causes problems at least for 
+# Cygwin.   
+
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc
-H5CC_PP = $(bindir)/h5pcc
-H5FC = $(bindir)/h5fc
-H5FC_PP = $(bindir)/h5pfc
-H5CPP = $(bindir)/h5c++
+H5CC = ${DESTDIR}$(bindir)/h5cc
+H5CC_PP = ${DESTDIR}$(bindir)/h5pcc
+H5FC = ${DESTDIR}$(bindir)/h5fc
+H5FC_PP = ${DESTDIR}$(bindir)/h5pfc
+H5CPP = ${DESTDIR}$(bindir)/h5c++
 ACLOCAL_AMFLAGS = "-I m4"
 
 # The trace script; this is used on source files from the C library to
@@ -426,7 +436,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
 # Add libtool shared library version numbers to the HDF5 library
 # See libtool versioning documentation online.
 LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 65
+LT_VERS_REVISION = 66
 LT_VERS_AGE = 0
 
 # Include src directory in both Fortran and C flags (C compiler is used
diff --git a/fortran/src/h5fc.in b/fortran/src/h5fc.in
index db44600..9e9409d 100755
--- a/fortran/src/h5fc.in
+++ b/fortran/src/h5fc.in
@@ -32,6 +32,24 @@ HL="@HL@"
 
 ############################################################################
 ##                                                                        ##
+## Things You Can Modify to Override HDF5 Library Build Components:       ##
+##                                                                        ##
+## (Advanced usage - know what you're doing - you're on your own here.)   ##
+## The three variables below can be used to insert paths and flags in     ##
+## FFLAGS, LDFLAGS, or LIBS in the h5fc compile line:                     ##
+##    $FLINKER $FFLAGS $H5BLD_FFLAGS $F9XSUFFIXFLAG $LDFLAGS $LIBS        ##
+##    $fmodules $link_objs $link_args $shared_link                        ##
+##                                                                        ##
+## These settings can be overriden by setting HDF5_FFLAGS,                ##
+## HDF5_LDFLAGS, or HDF5_LIBS in the environment.                         ##
+##                                                                        ##
+############################################################################
+FFLAGSBASE=""
+LDFLAGSBASE=""
+LIBSBASE=""
+
+############################################################################
+##                                                                        ##
 ## You shouldn't have to modify anything below this line.                 ##
 ##                                                                        ##
 ############################################################################
@@ -58,14 +76,27 @@ get_output_file="no"
 SHOW="eval"
 FCBASE="@FC@"
 FLINKERBASE="@FC@"
-FFLAGS="@AM_FCFLAGS@ @FCFLAGS@"
+
+# FFLAGS and LDFLAGS are reserved for use by the script user.  
+# FLAGS brought from the hdf5 build are put in H5BLD_*FLAGS.
+
+# User's FFLAGS come after their H5BLD counterparts to override
+# them.  User's LDFLAGS come just before clibpath, user's LIBS come after
+# $link_objs and before the hdf5 libraries in $link_args, followed by any
+# external library paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS
+# or LIBS carried in from the hdf5 build.
+
+H5BLD_FFLAGS="@AM_FCFLAGS@ @FCFLAGS@"
 F9XMODFLAG="@F9XMODFLAG@"
 F9XSUFFIXFLAG="@F9XSUFFIXFLAG@"
-LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@"
-LIBS="@LIBS@"
+H5BLD_LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@"
+H5BLD_LIBS="@LIBS@"
 
 FC="${HDF5_FC:-$FCBASE}"
 FLINKER="${HDF5_FLINKER:-$FLINKERBASE}"
+FFLAGS="${HDF5_FFLAGS:-$FFLAGSBASE}"
+LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
+LIBS="${HDF5_LIBS:-$LIBSBASE}"
 
 USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
 
@@ -92,6 +123,20 @@ usage() {
   echo " "
   echo "   HDF5_FC                  -  use a different Fortran 90 or 95 compiler"
   echo "   HDF5_FLINKER             -  use a different linker"
+  echo "   HDF5_USE_SHLIB=[yes|no]  -  use shared or static version of the HDF5 library"
+  echo "                                 [default: no]"
+  echo " "
+  echo " You can also add or change paths and flags to the compile line using"
+  echo " the following environment varibles or by assigning them to their counterparts"
+  echo " in the 'Things You Can Modify to Override...'" section of $prog_name
+  echo " "
+  echo "  Variable              Current value to be replaced"
+  echo "  HDF5_FFLAGS           \"$CFLAGSBASE\""
+  echo "  HDF5_LDFLAGS          \"$LDFLAGSBASE\""
+  echo "  HDF5_LIBS             \"$LIBSBASE\""
+  echo " "
+  echo " Note that adding library paths to HDF5_LDFLAGS where another hdf5 version"
+  echo " is located may link your program with that other hdf5 library version."
   echo " "
   exit $EXIT_FAILURE
 }
@@ -228,7 +273,7 @@ if test "x$do_compile" = "xyes"; then
   fi
 
 
-  $SHOW $FC $FFLAGS ${F9XSUFFIXFLAG} ${fmodules} $compile_args
+  $SHOW $FC $H5BLD_FFLAGS $FFLAGS ${F9XSUFFIXFLAG} ${fmodules} $compile_args
   status=$?
 
   if test "$status" != "0"; then
@@ -297,9 +342,14 @@ if test "x$do_link" = "xyes"; then
 
   # The LIBS are just a bunch of -l* libraries necessary for the HDF5
   # module. It's okay if they're included twice in the compile line.
-  link_args="$link_args $LIBS"
-
-  $SHOW $FLINKER $FFLAGS $F9XSUFFIXFLAG $fmodules $link_objs $link_args $shared_link $LDFLAGS
+  link_args="$link_args $H5BLD_LDFLAGS $H5BLD_LIBS"
+
+  # User's FFLAGS come after their H5BLD counterparts to override
+  # them.  User's LDFLAGS come just before clibpath, user's LIBS come after
+  # $link_objs and before the hdf5 libraries in $link_args, followed by any
+  # external library paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS
+  # or LIBS carried in from the hdf5 build.
+  $SHOW $FLINKER $FFLAGS $H5BLD_FFLAGS $F9XSUFFIXFLAG $LDFLAGS $fmodules $link_objs $LIBS $link_args $shared_link
   status=$?
 fi
 
diff --git a/fortran/test/CMakeLists.txt b/fortran/test/CMakeLists.txt
index 7c8c407..a536c2e 100644
--- a/fortran/test/CMakeLists.txt
+++ b/fortran/test/CMakeLists.txt
@@ -30,7 +30,7 @@ ADD_LIBRARY (${HDF5_F90_TEST_LIB_TARGET} ${LIB_TYPE} tf.f90)
 ADD_DEPENDENCIES(${HDF5_F90_TEST_LIB_TARGET} 
   ${HDF5_F90_C_TEST_LIB_TARGET}
 )
-IF (WIN32)
+IF (WIN32 AND NOT CYGWIN)
   IF (BUILD_SHARED_LIBS)
     SET_PROPERTY (TARGET ${HDF5_F90_TEST_LIB_TARGET}
 	    APPEND PROPERTY COMPILE_DEFINITIONS
@@ -48,7 +48,7 @@ IF (WIN32)
       APPEND PROPERTY COMPILE_DEFINITIONS
   	    HDF5F90_WINDOWS
   )
-ENDIF (WIN32)
+ENDIF (WIN32 AND NOT CYGWIN)
 SET_TARGET_PROPERTIES (${HDF5_F90_TEST_LIB_TARGET} PROPERTIES LINKER_LANGUAGE Fortran)
 TARGET_LINK_LIBRARIES (${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_C_TEST_LIB_TARGET})
 H5_SET_LIB_OPTIONS (${HDF5_F90_TEST_LIB_TARGET} ${HDF5_F90_TEST_LIB_NAME} ${LIB_TYPE})
@@ -81,11 +81,9 @@ TARGET_LINK_LIBRARIES (testhdf5_fortran
     ${HDF5_F90_LIB_TARGET}
     ${HDF5_LIB_TARGET}
 )
-IF (WIN32)
-  IF (MSVC)
-    TARGET_LINK_LIBRARIES (testhdf5_fortran "ws2_32.lib")
-  ENDIF (MSVC)
-ENDIF (WIN32)
+IF (WIN32 AND MSVC)
+  TARGET_LINK_LIBRARIES (testhdf5_fortran "ws2_32.lib")
+ENDIF (WIN32 AND MSVC)
 SET_TARGET_PROPERTIES (testhdf5_fortran PROPERTIES LINKER_LANGUAGE Fortran)
 
 ADD_TEST (NAME testhdf5_fortran COMMAND $<TARGET_FILE:testhdf5_fortran>)
@@ -105,11 +103,9 @@ TARGET_LINK_LIBRARIES (testhdf5_fortran_1_8
     ${HDF5_F90_LIB_TARGET}
     ${HDF5_LIB_TARGET}
 )
-IF (WIN32)
-  IF (MSVC)
-    TARGET_LINK_LIBRARIES (testhdf5_fortran_1_8 "ws2_32.lib")
-  ENDIF (MSVC)
-ENDIF (WIN32)
+IF (WIN32 AND MSVC)
+  TARGET_LINK_LIBRARIES (testhdf5_fortran_1_8 "ws2_32.lib")
+ENDIF (WIN32 AND MSVC)
 SET_TARGET_PROPERTIES (testhdf5_fortran_1_8 PROPERTIES LINKER_LANGUAGE Fortran)
 
 ADD_TEST (NAME testhdf5_fortran_1_8 COMMAND $<TARGET_FILE:testhdf5_fortran_1_8>)
@@ -123,11 +119,9 @@ TARGET_LINK_LIBRARIES (fflush1
     ${HDF5_F90_TEST_LIB_TARGET}
     ${HDF5_LIB_TARGET}
 )
-IF (WIN32)
-  IF (MSVC)
-    TARGET_LINK_LIBRARIES (fflush1 "ws2_32.lib")
-  ENDIF (MSVC)
-ENDIF (WIN32)
+IF (WIN32 AND MSVC)
+  TARGET_LINK_LIBRARIES (fflush1 "ws2_32.lib")
+ENDIF (WIN32 AND MSVC)
 SET_TARGET_PROPERTIES (fflush1 PROPERTIES LINKER_LANGUAGE Fortran)
 
 ADD_TEST (NAME fflush1 COMMAND $<TARGET_FILE:fflush1>)
@@ -141,11 +135,9 @@ TARGET_LINK_LIBRARIES (fflush2
     ${HDF5_F90_LIB_TARGET}
     ${HDF5_LIB_TARGET}
 )
-IF (WIN32)
-  IF (MSVC)
-    TARGET_LINK_LIBRARIES (fflush2 "ws2_32.lib")
-  ENDIF (MSVC)
-ENDIF (WIN32)
+IF (WIN32 AND MSVC)
+  TARGET_LINK_LIBRARIES (fflush2 "ws2_32.lib")
+ENDIF (WIN32 AND MSVC)
 SET_TARGET_PROPERTIES (fflush2 PROPERTIES LINKER_LANGUAGE Fortran)
 
 ADD_TEST (NAME fflush2 COMMAND $<TARGET_FILE:fflush2>)
diff --git a/fortran/test/Makefile.in b/fortran/test/Makefile.in
index 7b8369b..4c0b03f 100644
--- a/fortran/test/Makefile.in
+++ b/fortran/test/Makefile.in
@@ -385,14 +385,24 @@ LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
 LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
 LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 
+# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below  
+# has been removed. According to the official description of DESTDIR by Gnu at 
+# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is 
+# prepended to the normal and complete install path that it precedes for the 
+# purpose of installing in a temporary directory which is useful for building 
+# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another 
+# '/' at the beginning of the normal install path.  When DESTDIR is empty the  
+# path then begins with '//', which is incorrect and causes problems at least for 
+# Cygwin.   
+
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc
-H5CC_PP = $(bindir)/h5pcc
-H5FC = $(bindir)/h5fc
-H5FC_PP = $(bindir)/h5pfc
-H5CPP = $(bindir)/h5c++
+H5CC = ${DESTDIR}$(bindir)/h5cc
+H5CC_PP = ${DESTDIR}$(bindir)/h5pcc
+H5FC = ${DESTDIR}$(bindir)/h5fc
+H5FC_PP = ${DESTDIR}$(bindir)/h5pfc
+H5CPP = ${DESTDIR}$(bindir)/h5c++
 ACLOCAL_AMFLAGS = "-I m4"
 
 # The trace script; this is used on source files from the C library to
diff --git a/fortran/testpar/CMakeLists.txt b/fortran/testpar/CMakeLists.txt
index 7f702da..edabb35 100644
--- a/fortran/testpar/CMakeLists.txt
+++ b/fortran/testpar/CMakeLists.txt
@@ -28,11 +28,9 @@ TARGET_LINK_LIBRARIES (parallel_test
     ${HDF5_F90_LIB_TARGET}
     ${HDF5_LIB_TARGET}
 )
-IF (WIN32)
-  IF (MSVC)
-    TARGET_LINK_LIBRARIES (parallel_test "ws2_32.lib")
-  ENDIF (MSVC)
-ENDIF (WIN32)
+IF (WIN32 AND MSVC)
+  TARGET_LINK_LIBRARIES (parallel_test "ws2_32.lib")
+ENDIF (WIN32 AND MSVC)
 SET_TARGET_PROPERTIES (parallel_test PROPERTIES LINKER_LANGUAGE Fortran)
 
 ADD_TEST (NAME parallel_test COMMAND ${MPIEXEC} ${MPIEXEC_PREFLAGS} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_POSTFLAGS} $<TARGET_FILE:parallel_test>)
diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in
index 7bef605..f2e70b4 100644
--- a/fortran/testpar/Makefile.in
+++ b/fortran/testpar/Makefile.in
@@ -338,14 +338,24 @@ LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
 LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
 LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 
+# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below  
+# has been removed. According to the official description of DESTDIR by Gnu at 
+# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is 
+# prepended to the normal and complete install path that it precedes for the 
+# purpose of installing in a temporary directory which is useful for building 
+# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another 
+# '/' at the beginning of the normal install path.  When DESTDIR is empty the  
+# path then begins with '//', which is incorrect and causes problems at least for 
+# Cygwin.   
+
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc
-H5CC_PP = $(bindir)/h5pcc
-H5FC = $(bindir)/h5fc
-H5FC_PP = $(bindir)/h5pfc
-H5CPP = $(bindir)/h5c++
+H5CC = ${DESTDIR}$(bindir)/h5cc
+H5CC_PP = ${DESTDIR}$(bindir)/h5pcc
+H5FC = ${DESTDIR}$(bindir)/h5fc
+H5FC_PP = ${DESTDIR}$(bindir)/h5pfc
+H5CPP = ${DESTDIR}$(bindir)/h5c++
 ACLOCAL_AMFLAGS = "-I m4"
 
 # The trace script; this is used on source files from the C library to