[svn-r25309] Bring revisions #24783 - #24851 from trunk to revise_chunks.

Tested on jam, koala, ostrich, platypus.

9 files changed, 66 insertions, 53 deletions

diff --git a/fortran/CMakeLists.txt b/fortran/CMakeLists.txt
index c13f3c6..4d8c9dd 100644
--- a/fortran/CMakeLists.txt
+++ b/fortran/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 2.8.10)
+cmake_minimum_required (VERSION 2.8.11)
 PROJECT (HDF5_F90 C CXX Fortran)
 
 if (H5_HAVE_PARALLEL)
@@ -8,21 +8,21 @@ endif (H5_HAVE_PARALLEL)
 #-----------------------------------------------------------------------------
 # Traverse source subdirectory
 #-----------------------------------------------------------------------------
-ADD_SUBDIRECTORY (${HDF5_F90_SOURCE_DIR}/src ${HDF5_F90_BINARY_DIR}/src)
+add_subdirectory (${HDF5_F90_SOURCE_DIR}/src ${HDF5_F90_BINARY_DIR}/src)
 
 #-----------------------------------------------------------------------------
 # Build the Fortran Examples
 #-----------------------------------------------------------------------------
 if (HDF5_BUILD_EXAMPLES)
-  ADD_SUBDIRECTORY (${HDF5_F90_SOURCE_DIR}/examples ${HDF5_F90_BINARY_DIR}/examples)
+  add_subdirectory (${HDF5_F90_SOURCE_DIR}/examples ${HDF5_F90_BINARY_DIR}/examples)
 endif (HDF5_BUILD_EXAMPLES)
 
 #-----------------------------------------------------------------------------
 # Testing
 #-----------------------------------------------------------------------------
 if (BUILD_TESTING)
-  ADD_SUBDIRECTORY (${HDF5_F90_SOURCE_DIR}/test ${HDF5_F90_BINARY_DIR}/test)
+  add_subdirectory (${HDF5_F90_SOURCE_DIR}/test ${HDF5_F90_BINARY_DIR}/test)
   if (MPI_Fortran_FOUND)
-    ADD_SUBDIRECTORY (${HDF5_F90_SOURCE_DIR}/testpar ${HDF5_F90_BINARY_DIR}/testpar)
+    add_subdirectory (${HDF5_F90_SOURCE_DIR}/testpar ${HDF5_F90_BINARY_DIR}/testpar)
   endif (MPI_Fortran_FOUND)
 endif (BUILD_TESTING)
diff --git a/fortran/examples/CMakeLists.txt b/fortran/examples/CMakeLists.txt
index 80318a4..6f11895 100644
--- a/fortran/examples/CMakeLists.txt
+++ b/fortran/examples/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 2.8.10)
+cmake_minimum_required (VERSION 2.8.11)
 PROJECT (HDF5_F90_EXAMPLES C CXX Fortran)
 # --------------------------------------------------------------------
 # Notes: When creating examples they should be prefixed
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index 90f5aae..60057a3 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 2.8.10)
+cmake_minimum_required (VERSION 2.8.11)
 PROJECT (HDF5_F90_SRC C CXX Fortran)
 
 #-----------------------------------------------------------------------------
diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c
index 4c85df2..dcfcfc4 100644
--- a/fortran/src/H5_f.c
+++ b/fortran/src/H5_f.c
@@ -330,9 +330,10 @@ nh5close_types_c( hid_t_f * types, int_f *lentypes,
  * PURPOSE
  *  Initialize Fortran flags
  * INPUTS
- *  h5d_flags       - H5D inteface flags
- *  h5e_flags       - H5E inteface flags
- *  h5e_hid_flags   - H5E inteface flags of type hid_t
+ *  h5d_flags       - H5D interface flags
+ *  h5d_size_flags  - H5D interface flags of type size_t
+ *  h5e_flags       - H5E interface flags
+ *  h5e_hid_flags   - H5E interface flags of type hid_t
  *  h5f_flags       - H5F interface flags
  *  h5fd_flags      - H5FD interface flags
  *  h5fd_hid_flags  - H5FD interface flags of type hid_t
@@ -360,12 +361,15 @@ nh5close_types_c( hid_t_f * types, int_f *lentypes,
  *  Added Generic flags introduced in version 1.8
  *           MSB, January, 2008
  *  Added types in lines h5*_flags = ( )variable to match input
- *  Added E flags. 
+ *  Added E flags
  *           MSB, July 9, 2009
+ *  Added type h5d_flags of type size_t
+ *           MSB, Feb. 28, 2014
  * SOURCE
  */
 int_f
-nh5init_flags_c( int_f *h5d_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags,
+nh5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags, 
+		 int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags,
                  int_f *h5fd_flags, hid_t_f *h5fd_hid_flags,
                  int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags,
                  hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags,
@@ -376,6 +380,9 @@ nh5init_flags_c( int_f *h5d_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int
 /*
  *  H5D flags
  */
+    h5d_size_flags[0] = (size_t_f)H5D_CHUNK_CACHE_NSLOTS_DEFAULT;
+    h5d_size_flags[1] = (size_t_f)H5D_CHUNK_CACHE_NBYTES_DEFAULT;
+
     h5d_flags[0] = (int_f)H5D_COMPACT;
     h5d_flags[1] = (int_f)H5D_CONTIGUOUS;
     h5d_flags[2] = (int_f)H5D_CHUNKED;
@@ -395,18 +402,18 @@ nh5init_flags_c( int_f *h5d_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int
     h5d_flags[16] = (int_f)H5D_FILL_VALUE_UNDEFINED;
     h5d_flags[17] = (int_f)H5D_FILL_VALUE_DEFAULT;
     h5d_flags[18] = (int_f)H5D_FILL_VALUE_USER_DEFINED;
-    h5d_flags[19] = (int_f)H5D_CHUNK_CACHE_NSLOTS_DEFAULT;
-    h5d_flags[20] = (int_f)H5D_CHUNK_CACHE_NBYTES_DEFAULT;
-    h5d_flags[21] = (int_f)H5D_CHUNK_CACHE_W0_DEFAULT;
-    h5d_flags[22] = (int_f)H5D_MPIO_NO_COLLECTIVE;
-    h5d_flags[23] = (int_f)H5D_MPIO_CHUNK_INDEPENDENT;
-    h5d_flags[24] = (int_f)H5D_MPIO_CHUNK_COLLECTIVE;
-    h5d_flags[25] = (int_f)H5D_MPIO_CHUNK_MIXED;
-    h5d_flags[26] = (int_f)H5D_MPIO_CONTIGUOUS_COLLECTIVE;
+    h5d_flags[19] = (int_f)H5D_CHUNK_CACHE_W0_DEFAULT;
+    h5d_flags[20] = (int_f)H5D_MPIO_NO_COLLECTIVE;
+    h5d_flags[21] = (int_f)H5D_MPIO_CHUNK_INDEPENDENT;
+    h5d_flags[22] = (int_f)H5D_MPIO_CHUNK_COLLECTIVE;
+    h5d_flags[23] = (int_f)H5D_MPIO_CHUNK_MIXED;
+    h5d_flags[24] = (int_f)H5D_MPIO_CONTIGUOUS_COLLECTIVE;
+
 /*
  *  H5E flags
  */
     h5e_hid_flags[0] = (hid_t_f)H5E_DEFAULT;
+
     h5e_flags[0] = (int_f)H5E_MAJOR;
     h5e_flags[1] = (int_f)H5E_MINOR;
     h5e_flags[2] = (int_f)H5E_WALK_UPWARD;
diff --git a/fortran/src/H5_ff.f90 b/fortran/src/H5_ff.f90
index f9c20ac..49e64a3 100644
--- a/fortran/src/H5_ff.f90
+++ b/fortran/src/H5_ff.f90
@@ -87,6 +87,7 @@ CONTAINS
     END INTERFACE
     INTERFACE
        INTEGER FUNCTION h5init_flags_c(i_H5D_flags, &
+            i_H5D_size_flags,&
             i_H5E_flags, &
             i_H5E_hid_flags, &
             i_H5F_flags, &
@@ -106,6 +107,7 @@ CONTAINS
             i_H5generic_flags)
          USE H5GLOBAL
          INTEGER i_H5D_flags(H5D_FLAGS_LEN)
+         INTEGER(SIZE_T) i_H5D_size_flags(H5D_SIZE_FLAGS_LEN)
          INTEGER i_H5E_flags(H5E_FLAGS_LEN)
          INTEGER(HID_T) i_H5E_hid_flags(H5E_HID_FLAGS_LEN)
          INTEGER i_H5F_flags(H5F_FLAGS_LEN)
@@ -139,6 +141,7 @@ CONTAINS
     END INTERFACE
     error_1 = h5init_types_c(predef_types, floating_types, integer_types)
     error_2 = h5init_flags_c(H5D_flags, &
+         H5D_size_flags, &
          H5E_flags, &
          H5E_hid_flags, &
          H5F_flags, &
diff --git a/fortran/src/H5f90global.f90 b/fortran/src/H5f90global.f90
index a6168d52..f2bb3de 100644
--- a/fortran/src/H5f90global.f90
+++ b/fortran/src/H5f90global.f90
@@ -76,7 +76,7 @@ MODULE H5GLOBAL
   ! integer data types are added
   INTEGER, PARAMETER :: INTEGER_TYPES_LEN = 27
 
-  INTEGER(HID_T) H5T_NATIVE_INTEGER_1, &
+  INTEGER(HID_T) :: H5T_NATIVE_INTEGER_1, &
        H5T_NATIVE_INTEGER_2, &
        H5T_NATIVE_INTEGER_4, &
        H5T_NATIVE_INTEGER_8, &
@@ -111,7 +111,7 @@ MODULE H5GLOBAL
 !       continuation lines to 39; the F03/F08 standard limits the number 
 !       to 255 lines.
 
-  INTEGER(HID_T) H5T_STD_U32LE,   &
+  INTEGER(HID_T) :: H5T_STD_U32LE,   &
        H5T_STD_U64BE,   &
        H5T_STD_U64LE,   &
        H5T_STRING,      &
@@ -235,7 +235,7 @@ MODULE H5GLOBAL
   ! H5F flags declaration
   !
   INTEGER, PARAMETER :: H5F_FLAGS_LEN = 19
-  INTEGER H5F_flags(H5F_FLAGS_LEN)
+  INTEGER :: H5F_flags(H5F_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5F_FLAGS/
   !DEC$endif
@@ -284,7 +284,7 @@ MODULE H5GLOBAL
   ! H5generic flags declaration
   !
   INTEGER, PARAMETER :: H5generic_FLAGS_LEN = 9
-  INTEGER H5generic_flags(H5generic_FLAGS_LEN)
+  INTEGER :: H5generic_flags(H5generic_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5generic_FLAGS/
   !DEC$endif
@@ -315,7 +315,7 @@ MODULE H5GLOBAL
   ! H5G flags declaration
   !
   INTEGER, PARAMETER :: H5G_FLAGS_LEN = 12
-  INTEGER H5G_flags(H5G_FLAGS_LEN)
+  INTEGER :: H5G_flags(H5G_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5G_FLAGS/
   !DEC$endif
@@ -354,8 +354,10 @@ MODULE H5GLOBAL
   ! H5D flags declaration
   !
 
-  INTEGER, PARAMETER :: H5D_FLAGS_LEN = 27
-  INTEGER H5D_flags(H5D_FLAGS_LEN)
+  INTEGER, PARAMETER :: H5D_FLAGS_LEN = 25
+  INTEGER :: H5D_flags(H5D_FLAGS_LEN)
+  INTEGER, PARAMETER :: H5D_SIZE_FLAGS_LEN = 2
+  INTEGER(SIZE_T) :: H5D_size_flags(H5D_SIZE_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5D_FLAGS/
   !DEC$endif
@@ -390,8 +392,8 @@ MODULE H5GLOBAL
 ! shortened "_CONTIGUOUS" to "_CONTIG" to satisfy the limit of 31
 ! characters for variable names in Fortran.
 
-  INTEGER :: H5D_CHUNK_CACHE_NSLOTS_DFLT_F
-  INTEGER :: H5D_CHUNK_CACHE_NBYTES_DFLT_F
+  INTEGER(SIZE_T) :: H5D_CHUNK_CACHE_NSLOTS_DFLT_F
+  INTEGER(SIZE_T) :: H5D_CHUNK_CACHE_NBYTES_DFLT_F
   INTEGER :: H5D_CHUNK_CACHE_W0_DFLT_F
   INTEGER :: H5D_MPIO_NO_COLLECTIVE_F
   INTEGER :: H5D_MPIO_CHUNK_INDEPENDENT_F
@@ -423,22 +425,23 @@ MODULE H5GLOBAL
   EQUIVALENCE(H5D_flags(18), H5D_FILL_VALUE_DEFAULT_F)
   EQUIVALENCE(H5D_flags(19), H5D_FILL_VALUE_USER_DEFINED_F)
 
-  EQUIVALENCE(H5D_flags(20), H5D_CHUNK_CACHE_NSLOTS_DFLT_F)
-  EQUIVALENCE(H5D_flags(21), H5D_CHUNK_CACHE_NBYTES_DFLT_F)
-  EQUIVALENCE(H5D_flags(22), H5D_CHUNK_CACHE_W0_DFLT_F)
-  EQUIVALENCE(H5D_flags(23), H5D_MPIO_NO_COLLECTIVE_F)
-  EQUIVALENCE(H5D_flags(24), H5D_MPIO_CHUNK_INDEPENDENT_F)
-  EQUIVALENCE(H5D_flags(25), H5D_MPIO_CHUNK_COLLECTIVE_F)
-  EQUIVALENCE(H5D_flags(26), H5D_MPIO_CHUNK_MIXED_F)
-  EQUIVALENCE(H5D_flags(27), H5D_MPIO_CONTIG_COLLECTIVE_F)
+  EQUIVALENCE(H5D_flags(20), H5D_CHUNK_CACHE_W0_DFLT_F)
+  EQUIVALENCE(H5D_flags(21), H5D_MPIO_NO_COLLECTIVE_F)
+  EQUIVALENCE(H5D_flags(22), H5D_MPIO_CHUNK_INDEPENDENT_F)
+  EQUIVALENCE(H5D_flags(23), H5D_MPIO_CHUNK_COLLECTIVE_F)
+  EQUIVALENCE(H5D_flags(24), H5D_MPIO_CHUNK_MIXED_F)
+  EQUIVALENCE(H5D_flags(25), H5D_MPIO_CONTIG_COLLECTIVE_F)
+
+  EQUIVALENCE(H5D_size_flags(1), H5D_CHUNK_CACHE_NSLOTS_DFLT_F)
+  EQUIVALENCE(H5D_size_flags(2), H5D_CHUNK_CACHE_NBYTES_DFLT_F)
 
   !
   ! H5E flags declaration
   !
   INTEGER, PARAMETER :: H5E_FLAGS_LEN = 4
-  INTEGER H5E_flags(H5E_FLAGS_LEN)
+  INTEGER :: H5E_flags(H5E_FLAGS_LEN)
   INTEGER, PARAMETER :: H5E_HID_FLAGS_LEN = 1
-  INTEGER(HID_T) H5E_hid_flags(H5E_HID_FLAGS_LEN)
+  INTEGER(HID_T) :: H5E_hid_flags(H5E_HID_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5E_FLAGS/
   !DEC$ATTRIBUTES DLLEXPORT :: /H5E_HID_FLAGS/
@@ -462,7 +465,7 @@ MODULE H5GLOBAL
   ! H5FD flags declaration
   !
   INTEGER, PARAMETER :: H5FD_FLAGS_LEN = 11
-  INTEGER H5FD_flags(H5FD_FLAGS_LEN)
+  INTEGER :: H5FD_flags(H5FD_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5FD_FLAGS/
   !DEC$endif
@@ -495,7 +498,7 @@ MODULE H5GLOBAL
   ! H5FD file drivers flags declaration
   !
   INTEGER, PARAMETER :: H5FD_HID_FLAGS_LEN = 7
-  INTEGER(HID_T) H5FD_hid_flags(H5FD_HID_FLAGS_LEN)
+  INTEGER(HID_T) :: H5FD_hid_flags(H5FD_HID_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5FD_HID_FLAGS/
   !DEC$endif
@@ -521,7 +524,7 @@ MODULE H5GLOBAL
   ! H5I flags declaration
   !
   INTEGER, PARAMETER :: H5I_FLAGS_LEN = 7
-  INTEGER H5I_flags(H5I_FLAGS_LEN)
+  INTEGER :: H5I_flags(H5I_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5I_FLAGS/
   !DEC$endif
@@ -671,10 +674,10 @@ MODULE H5GLOBAL
   EQUIVALENCE(H5P_flags(18), H5P_LINK_ACCESS_F)
 
   !
-  ! H5P intgere flags declaration
+  ! H5P integers flags declaration
   !
   INTEGER, PARAMETER :: H5P_FLAGS_INT_LEN = 2
-  INTEGER  H5P_flags_int(H5P_FLAGS_INT_LEN)
+  INTEGER :: H5P_flags_int(H5P_FLAGS_INT_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5P_FLAGS_INT/
   !DEC$endif
@@ -687,7 +690,7 @@ MODULE H5GLOBAL
   ! H5R flags declaration
   !
   INTEGER, PARAMETER :: H5R_FLAGS_LEN = 2
-  INTEGER H5R_flags(H5R_FLAGS_LEN)
+  INTEGER :: H5R_flags(H5R_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5R_FLAGS/
   !DEC$endif
@@ -703,7 +706,7 @@ MODULE H5GLOBAL
   ! H5S flags declaration
   !
   INTEGER, PARAMETER :: H5S_FLAGS_LEN = 19
-  INTEGER H5S_flags(H5S_FLAGS_LEN)
+  INTEGER :: H5S_flags(H5S_FLAGS_LEN)
   INTEGER, PARAMETER :: H5S_HSIZE_FLAGS_LEN = 1
   INTEGER(HSIZE_T) H5S_hsize_flags(H5S_HSIZE_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
@@ -766,7 +769,7 @@ MODULE H5GLOBAL
   ! H5T flags declaration
   !
   INTEGER, PARAMETER :: H5T_FLAGS_LEN = 35
-  INTEGER H5T_flags(H5T_FLAGS_LEN)
+  INTEGER :: H5T_flags(H5T_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5T_FLAGS/
   !DEC$endif
@@ -847,7 +850,7 @@ MODULE H5GLOBAL
   ! H5Z flags declaration
   !
   INTEGER, PARAMETER :: H5Z_FLAGS_LEN = 20
-  INTEGER H5Z_flags(H5Z_FLAGS_LEN)
+  INTEGER :: H5Z_flags(H5Z_FLAGS_LEN)
   !DEC$if defined(BUILD_HDF5_DLL)
   !DEC$ATTRIBUTES DLLEXPORT :: /H5Z_FLAGS/
   !DEC$endif
diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h
index 4b02b6c..2c5e9a1 100644
--- a/fortran/src/H5f90proto.h
+++ b/fortran/src/H5f90proto.h
@@ -1260,9 +1260,9 @@ H5_FCDLL int_f nprocess_buffer(hid_t_f *estack_id,void **buffer);
 
 H5_FCDLL int_f nh5open_c(void);
 H5_FCDLL int_f nh5close_c(void);
-H5_FCDLL int_f nh5init_types_c(hid_t_f *types, hid_t_f * floatingtypes, hid_t_f * integertypes);
-H5_FCDLL int_f nh5close_types_c(hid_t_f *types, int_f *lentypes, hid_t_f * floatingtypes, int_f * floatinglen, hid_t_f * integertypes,  int_f * integerlen);
-H5_FCDLL int_f nh5init_flags_c(int_f *h5d_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags,
+H5_FCDLL int_f nh5init_types_c(hid_t_f *types, hid_t_f *floatingtypes, hid_t_f *integertypes);
+H5_FCDLL int_f nh5close_types_c(hid_t_f *types, int_f *lentypes, hid_t_f *floatingtypes, int_f *floatinglen, hid_t_f *integertypes, int_f *integerlen);
+H5_FCDLL int_f nh5init_flags_c(int_f *h5d_flags, size_t_f *h5d_size_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags,
 			       int_f *h5fd_flags, hid_t_f *h5fd_hid_flags,
 			       int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags,
 			       hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags,
diff --git a/fortran/test/CMakeLists.txt b/fortran/test/CMakeLists.txt
index 4b8a8e9..ff88919 100644
--- a/fortran/test/CMakeLists.txt
+++ b/fortran/test/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 2.8.10)
+cmake_minimum_required (VERSION 2.8.11)
 PROJECT (HDF5_FORTRAN_TESTS C CXX Fortran)
 
 #-----------------------------------------------------------------------------
diff --git a/fortran/testpar/CMakeLists.txt b/fortran/testpar/CMakeLists.txt
index 54da542..3361220 100644
--- a/fortran/testpar/CMakeLists.txt
+++ b/fortran/testpar/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 2.8.10)
+cmake_minimum_required (VERSION 2.8.11)
 PROJECT (HDF5_FORTRAN_TESTPAR C CXX Fortran)
 
 #-----------------------------------------------------------------------------