HDF5 1 8 merge of recent changes and tools (#353)

* Update supported platforms

* Merge PR#3 changes from develop

* # WARNING: head commit changed in the meantime

Merge gcc 10 diagnostics option from develop

Merge CMake changes from develop
Merge warnings from develop
Merge #318 OSX changes from develop
Merge tools changes from develop
Merge test macros from develop

* Format updates

* Fix missing semicolon and format fix

* Format update

* Correct actions, remove java option

* Update autotools build files

* Add testfiles

* Fix configure issue with make flags

* Init fapls to default

* Update generated files and fix h5repack id closure

* update format

2 files changed, 20 insertions, 21 deletions

diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt
index 929d867..b309e92 100644
--- a/hl/fortran/src/CMakeLists.txt
+++ b/hl/fortran/src/CMakeLists.txt
@@ -245,11 +245,11 @@ if (BUILD_SHARED_LIBS AND NOT SKIP_HDF5_FORTRAN_SHARED)
   set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_HL_F90_LIB_CORENAME}")
 endif ()
 
-set (_PKG_CONFIG_REQUIRES "${HDF5_HL_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}")
-set (_PKG_CONFIG_REQUIRES_PRIVATE "${HDF5_HL_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}")
+set (_PKG_CONFIG_REQUIRES "${HDF5_F90_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}")
+set (_PKG_CONFIG_REQUIRES_PRIVATE "${HDF5_F90_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}")
 
 configure_file (
-    ${HDF_RESOURCES_DIR}/libhdf5.pc.in
+    ${HDF_CONFIG_DIR}/libhdf5.pc.in
     ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_HL_F90_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
     @ONLY
 )
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index c02d331..0c32660 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -421,19 +421,18 @@ AMTAR = @AMTAR@
 
 # H5_CFLAGS holds flags that should be used when building hdf5,
 # but which should not be exported to h5cc for building other programs.
-# AM_CFLAGS is an automake construct which should be used by Makefiles 
+# AM_CFLAGS is an automake construct which should be used by Makefiles
 # instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
 # This applies to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS as well.
-AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@ @H5_ECFLAGS@
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
 AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@ -I$(top_srcdir)/src \
 	-I$(top_srcdir)/hl/src -I$(top_builddir)/hl/src \
 	-I$(top_srcdir)/fortran/src -I$(top_builddir)/fortran/src
-AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@ @H5_ECXXFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
 AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
 AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@ -I$(top_builddir)/fortran/src \
 	$(F9XMODFLAG)$(top_builddir)/fortran/src
 AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1)
-AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AUTOCONF = @AUTOCONF@
 AUTOHEADER = @AUTOHEADER@
@@ -464,6 +463,7 @@ DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
 DEV_WARNINGS = @DEV_WARNINGS@
+DIAGS = @DIAGS@
 DIRECT_VFD = @DIRECT_VFD@
 DLLTOOL = @DLLTOOL@
 DSYMUTIL = @DSYMUTIL@
@@ -491,8 +491,6 @@ GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
 H5_CXXFLAGS = @H5_CXXFLAGS@
-H5_ECFLAGS = @H5_ECFLAGS@
-H5_ECXXFLAGS = @H5_ECXXFLAGS@
 H5_FCFLAGS = @H5_FCFLAGS@
 H5_FORTRAN_SHARED = @H5_FORTRAN_SHARED@
 H5_LDFLAGS = @H5_LDFLAGS@
@@ -671,15 +669,15 @@ LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
 LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
 LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 
-# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below  
-# has been removed. According to the official description of DESTDIR by Gnu at 
-# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is 
-# prepended to the normal and complete install path that it precedes for the 
-# purpose of installing in a temporary directory which is useful for building 
-# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another 
-# '/' at the beginning of the normal install path.  When DESTDIR is empty the  
-# path then begins with '//', which is incorrect and causes problems at least for 
-# Cygwin.   
+# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below
+# has been removed. According to the official description of DESTDIR by Gnu at
+# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is
+# prepended to the normal and complete install path that it precedes for the
+# purpose of installing in a temporary directory which is useful for building
+# rpms and other packages.  The '/' after ${DESTDIR} will be followed by another
+# '/' at the beginning of the normal install path.  When DESTDIR is empty the
+# path then begins with '//', which is incorrect and causes problems at least for
+# Cygwin.
 
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
@@ -756,7 +754,7 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
-chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST)
 TEST_EXTENSIONS = .sh
 SH_LOG_COMPILER = $(SHELL)
 AM_SH_LOG_FLAGS = 
@@ -1255,8 +1253,9 @@ uninstall-am: uninstall-libLTLIBRARIES uninstall-local
 # commands that should be executed even if a file with the same name already
 # exists.
 .PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
-        build-tests check-clean check-install check-p check-s check-vfd \
-        install-doc lib progs tests uninstall-doc _exec_check-s _test help
+	build-tests check-clean check-install check-p check-s check-vfd \
+	install-doc lib progs tests uninstall-doc \
+	_exec_check-s _test help
 
 help:
 	@$(top_srcdir)/bin/makehelp