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authorScot Breitenfeld <brtnfld@hdfgroup.org>2018-06-15 18:53:36 (GMT)
committerScot Breitenfeld <brtnfld@hdfgroup.org>2018-06-15 18:53:36 (GMT)
commit87829e06189cd9b29583b5ca8065b52b1f4cd523 (patch)
tree495ea989045018667409ee2e9a9d1ffded52091f /hl/test/dectris_hl_perf.c
parent413bc90ec95524c72d0576bc9f1fc5356e541473 (diff)
parent57f64b92d19fed2879ee9bafe1d29bfac865d54c (diff)
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Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10
* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits) HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly Cleaned up H5Fmount/unmount code. Normalization with vol_integration branch. Add fortran MPI to test and example Add mpi include folders for fortran C objects Normalization with the vol_integration branch. Fixed MANIFEST Fix usage of compression lib in shared tests Fix jni function call version Fix the error found after earlier checkin. H5O_info fixes for java and examples Added a RELASE.txt entry for HDFFV-10505. Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags. (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463. Normalize with vol_integration. Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c. Restored some unused #defines to the deprecated section of H5Dpublic.h. Changes made based on feedback from pull request #1039. ...
Diffstat (limited to 'hl/test/dectris_hl_perf.c')
-rw-r--r--hl/test/dectris_hl_perf.c691
1 files changed, 0 insertions, 691 deletions
diff --git a/hl/test/dectris_hl_perf.c b/hl/test/dectris_hl_perf.c
deleted file mode 100644
index 13cfac8..0000000
--- a/hl/test/dectris_hl_perf.c
+++ /dev/null
@@ -1,691 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/*
- * This test is for the DECTRIS project to the H5DOwrite_chunk function
- *
- */
-
-#include "hdf5_hl.h"
-
-#ifdef H5_HAVE_FILTER_DEFLATE
-#include <zlib.h>
-
-#if !defined(WIN32) && !defined(__MINGW32__)
-
-#include <math.h>
-
-#ifdef H5_STDC_HEADERS
-# include <errno.h>
-# include <fcntl.h>
-# include <stdio.h>
-# include <stdlib.h>
-#endif
-
-#ifdef H5_HAVE_UNISTD_H
-# include <sys/types.h>
-# include <unistd.h>
-#endif
-
-#ifdef H5_HAVE_SYS_STAT_H
-# include <sys/stat.h>
-#endif
-
-#if defined(H5_TIME_WITH_SYS_TIME)
-# include <sys/time.h>
-# include <time.h>
-#elif defined(H5_HAVE_SYS_TIME_H)
-# include <sys/time.h>
-#else
-# include <time.h>
-#endif
-
-const char *FILENAME[] = {
- "dectris_perf",
- "unix.raw",
- NULL
-};
-
-/*
- * Print the current location on the standard output stream.
- */
-#define FUNC __func__
-#define AT() printf (" at %s:%d in %s()...\n", \
- __FILE__, __LINE__, FUNC);
-#define H5_FAILED() {puts("*FAILED*");fflush(stdout);}
-#define TEST_ERROR {H5_FAILED(); AT(); goto error;}
-#define TESTING(WHAT) {printf("Testing %-62s",WHAT); fflush(stdout);}
-#define PASSED() {puts(" PASSED");fflush(stdout);}
-
-#define DIRECT_UNCOMPRESSED_DSET "direct_uncompressed_dset"
-#define DIRECT_COMPRESSED_DSET "direct_compressed_dset"
-#define REG_COMPRESSED_DSET "reg_compressed_dset"
-#define REG_NO_COMPRESS_DSET "reg_no_compress_dset"
-#define RANK 3
-#define NX 100
-#define NY 1000
-#define NZ 250
-#define CHUNK_NX 1
-#define CHUNK_NY 1000
-#define CHUNK_NZ 250
-
-#define DEFLATE_SIZE_ADJUST(s) (ceil(((double)(s))*1.001)+12)
-char filename[1024];
-unsigned int *outbuf[NX];
-size_t data_size[NX];
-double total_size = 0.0;
-unsigned int *direct_buf[NX];
-double MB = 1048576.0;
-
-/*--------------------------------------------------
- * Function to report IO rate
- *--------------------------------------------------
- */
-void reportTime(struct timeval start, double mbytes)
-{
- struct timeval timeval_stop,timeval_diff;
-
- /*end timing*/
- gettimeofday(&timeval_stop,NULL);
-
- /* Calculate the elapsed gettimeofday time */
- timeval_diff.tv_usec=timeval_stop.tv_usec-start.tv_usec;
- timeval_diff.tv_sec=timeval_stop.tv_sec-start.tv_sec;
-
- if(timeval_diff.tv_usec<0) {
- timeval_diff.tv_usec+=1000000;
- timeval_diff.tv_sec--;
- } /* end if */
-
-/*printf("mbytes=%lf, sec=%lf, usec=%lf\n", mbytes, (double)timeval_diff.tv_sec, (double)timeval_diff.tv_usec);*/
- printf("MBytes/second: %lf\n", (double)mbytes/((double)timeval_diff.tv_sec+((double)timeval_diff.tv_usec/(double)1000000.0)));
-}
-
-/*--------------------------------------------------
- * Create file, datasets, and initialize data
- *--------------------------------------------------
- */
-int create_file(hid_t fapl_id)
-{
- hid_t file; /* handles */
- hid_t fapl;
- hid_t cparms;
- hid_t dataspace, dataset;
- hsize_t dims[RANK] = {NX, NY, NZ};
- hsize_t chunk_dims[RANK] ={CHUNK_NX, CHUNK_NY, CHUNK_NZ};
- unsigned int aggression = 9; /* Compression aggression setting */
- int ret;
- int i, j, n;
-
- int flag;
- int unix_file;
-
- unsigned int *p;
- size_t buf_size = CHUNK_NY*CHUNK_NZ*sizeof(unsigned int);
-
- const Bytef *z_src;
- Bytef *z_dst; /*destination buffer */
- uLongf z_dst_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size);
- uLong z_src_nbytes = (uLong)buf_size;
-
- TESTING("Create a file and dataset");
-
- /*
- * Create the data space with unlimited dimensions.
- */
- if((dataspace = H5Screate_simple(RANK, dims, NULL)) < 0)
- TEST_ERROR;
-
- /*
- * Create a new file. If file exists its contents will be overwritten.
- */
- if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_id)) < 0)
- TEST_ERROR;
-
- /*
- * Modify dataset creation properties, i.e. enable chunking and compression
- */
- if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
- TEST_ERROR;
-
- if(H5Pset_chunk( cparms, RANK, chunk_dims) < 0)
- TEST_ERROR;
-
- /*
- * Create a new dataset within the file using cparms
- * creation properties.
- */
- if((dataset = H5Dcreate2(file, DIRECT_UNCOMPRESSED_DSET, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
- cparms, H5P_DEFAULT)) < 0)
- TEST_ERROR;
-
- if(H5Dclose(dataset) < 0)
- TEST_ERROR;
-
- if((dataset = H5Dcreate2(file, REG_NO_COMPRESS_DSET, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
- cparms, H5P_DEFAULT)) < 0)
- TEST_ERROR;
-
- if(H5Dclose(dataset) < 0)
- TEST_ERROR;
-
- /* Set compression */
- if(H5Pset_deflate( cparms, aggression) < 0)
- TEST_ERROR;
-
- if((dataset = H5Dcreate2(file, DIRECT_COMPRESSED_DSET, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
- cparms, H5P_DEFAULT)) < 0)
- TEST_ERROR;
-
- if(H5Dclose(dataset) < 0)
- TEST_ERROR;
-
-
- if((dataset = H5Dcreate2(file, REG_COMPRESSED_DSET, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
- cparms, H5P_DEFAULT)) < 0)
- TEST_ERROR;
-
- if(H5Dclose(dataset) < 0)
- TEST_ERROR;
-
- if(H5Fclose(file) < 0)
- TEST_ERROR;
-
- if(H5Sclose(dataspace) < 0)
- TEST_ERROR;
-
- if(H5Pclose(cparms) < 0)
- TEST_ERROR;
-
- /* create a unix file*/
- flag = O_CREAT|O_TRUNC|O_WRONLY;
-
- if ((unix_file=open(FILENAME[1],flag,S_IRWXU))== -1)
- TEST_ERROR;
-
- if (close(unix_file) < 0)
- {
- printf(" unable to close the file\n");
- TEST_ERROR;
- }
-
-
- /* Initialize data for chunks */
- for(i = 0; i < NX; i++) {
- p = direct_buf[i] = (unsigned int*)malloc(CHUNK_NY*CHUNK_NZ*sizeof(unsigned int));
-
- for(j=0; j < CHUNK_NY*CHUNK_NZ; j++, p++)
- *p = rand() % 65000;
-
- z_src = (const Bytef*)direct_buf[i];
-
- z_dst_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size);
- /* Allocate output (compressed) buffer */
- outbuf[i] = (unsigned int*)malloc((size_t)z_dst_nbytes);
- z_dst = (Bytef *)outbuf[i];
-
- /* Perform compression from the source to the destination buffer */
- ret = compress2(z_dst, &z_dst_nbytes, z_src, z_src_nbytes, aggression);
-
- data_size[i] = (size_t)z_dst_nbytes;
- total_size += data_size[i];
-
- /* Check for various zlib errors */
- if(Z_BUF_ERROR == ret) {
- fprintf(stderr, "overflow");
- TEST_ERROR;
- } else if(Z_MEM_ERROR == ret) {
- fprintf(stderr, "deflate memory error");
- TEST_ERROR;
- } else if(Z_OK != ret) {
- fprintf(stderr, "other deflate error");
- TEST_ERROR;
- }
- }
-
-
- PASSED();
-
-error:
- H5E_BEGIN_TRY {
- H5Dclose(dataset);
- H5Sclose(dataspace);
- H5Pclose(cparms);
- H5Fclose(file);
- } H5E_END_TRY;
- return 1;
-}
-
-/*--------------------------------------------------
- * Benchmark the performance of the new function
- * with precompressed data.
- *--------------------------------------------------
- */
-int
-test_direct_write_uncompressed_data(hid_t fapl_id)
-{
- hid_t file; /* handles */
- hid_t dataspace, dataset;
- hid_t dxpl;
- herr_t status;
- int i;
-
- unsigned filter_mask = 0;
- hsize_t offset[RANK] = {0, 0, 0};
-
- struct timeval timeval_start;
-
- TESTING("H5DOwrite_chunk for uncompressed data");
-
- if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
- TEST_ERROR;
-
- /* Start the timer */
- gettimeofday(&timeval_start,NULL);
-
- /* Reopen the file and dataset */
- if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl_id)) < 0)
- TEST_ERROR;
-
- if((dataset = H5Dopen2(file, DIRECT_UNCOMPRESSED_DSET, H5P_DEFAULT)) < 0)
- TEST_ERROR;
-
-
- /* Write the compressed chunk data repeatedly to cover all the chunks in the
- * dataset, using the direct writing function. */
- for(i=0; i<NX; i++) {
- status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, CHUNK_NY*CHUNK_NZ*sizeof(unsigned int), direct_buf[i]);
- (offset[0])++;
- }
-
- /*
- * Close/release resources.
- */
- H5Dclose(dataset);
- H5Pclose(dxpl);
- H5Fclose(file);
-
- /* Report the performance */
- reportTime(timeval_start, (double)(NX*NY*NZ*sizeof(unsigned int)/MB));
-
- PASSED();
- return 0;
-
-error:
- H5E_BEGIN_TRY {
- H5Dclose(dataset);
- H5Pclose(dxpl);
- H5Fclose(file);
- } H5E_END_TRY;
- return 1;
-}
-
-
-/*--------------------------------------------------
- * Benchmark the performance of the new function
- * with precompressed data.
- *--------------------------------------------------
- */
-int
-test_direct_write_compressed_data(hid_t fapl_id)
-{
- hid_t file; /* handles */
- hid_t dataspace, dataset;
- hid_t dxpl;
- herr_t status;
- int i;
-
- unsigned filter_mask = 0;
- hsize_t offset[RANK] = {0, 0, 0};
-
- struct timeval timeval_start;
-
- TESTING("H5DOwrite_chunk for pre-compressed data");
-
- if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
- TEST_ERROR;
-
- /* Start the timer */
- gettimeofday(&timeval_start,NULL);
-
- /* Reopen the file and dataset */
- if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl_id)) < 0)
- TEST_ERROR;
-
- if((dataset = H5Dopen2(file, DIRECT_COMPRESSED_DSET, H5P_DEFAULT)) < 0)
- TEST_ERROR;
-
-
- /* Write the compressed chunk data repeatedly to cover all the chunks in the
- * dataset, using the direct writing function. */
- for(i=0; i<NX; i++) {
- status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, data_size[i], outbuf[i]);
- (offset[0])++;
- }
-
- /*
- * Close/release resources.
- */
- H5Dclose(dataset);
- H5Pclose(dxpl);
- H5Fclose(file);
-
- /* Report the performance */
- reportTime(timeval_start, (double)(total_size/MB));
-
- PASSED();
- return 0;
-
-error:
- H5E_BEGIN_TRY {
- H5Dclose(dataset);
- H5Pclose(dxpl);
- H5Fclose(file);
- } H5E_END_TRY;
- return 1;
-}
-
-/*--------------------------------------------------
- * Benchmark the performance of the regular H5Dwrite
- * with compression filter enabled.
- *--------------------------------------------------
- */
-int
-test_compressed_write(hid_t fapl_id)
-{
- hid_t file; /* handles */
- hid_t dataspace, dataset;
- hid_t mem_space;
- hsize_t chunk_dims[RANK] ={CHUNK_NX, CHUNK_NY, CHUNK_NZ};
- hid_t dxpl;
- herr_t status;
- int i;
-
- hsize_t start[RANK]; /* Start of hyperslab */
- hsize_t stride[RANK]; /* Stride of hyperslab */
- hsize_t count[RANK]; /* Block count */
- hsize_t block[RANK]; /* Block sizes */
-
- struct timeval timeval_start;
-
- TESTING("H5Dwrite with compression enabled");
-
- if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
- TEST_ERROR;
-
- if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
- TEST_ERROR;
-
- /* Start the timer */
- gettimeofday(&timeval_start,NULL);
-
- /* Reopen the file and dataset */
- if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl_id)) < 0)
- TEST_ERROR;
-
- if((dataset = H5Dopen2(file, REG_COMPRESSED_DSET, H5P_DEFAULT)) < 0)
- TEST_ERROR;
-
- if((dataspace = H5Dget_space(dataset)) < 0)
- TEST_ERROR;
-
- start[0] = start[1] = start[2] = 0;
- stride[0] = stride[1] = stride[2] = 1;
- count[0] = count[1] = count[2] = 1;
- block[0] = CHUNK_NX; block[1] = CHUNK_NY; block[2] = CHUNK_NZ;
-
- for(i=0; i<NX; i++) {
- /*
- * Select hyperslab for one chunk in the file
- */
- if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
- TEST_ERROR;
- (start[0])++;
-
- if((status = H5Dwrite(dataset, H5T_NATIVE_INT, mem_space, dataspace,
- H5P_DEFAULT, direct_buf[i])) < 0)
- TEST_ERROR;
- }
-
- /*
- * Close/release resources.
- */
- H5Dclose(dataset);
- H5Sclose(dataspace);
- H5Sclose(mem_space);
- H5Pclose(dxpl);
- H5Fclose(file);
-
- /* Report the performance */
- reportTime(timeval_start, (double)(NX*NY*NZ*sizeof(unsigned int)/MB));
-
- PASSED();
- return 0;
-
-error:
- H5E_BEGIN_TRY {
- H5Dclose(dataset);
- H5Sclose(dataspace);
- H5Sclose(mem_space);
- H5Pclose(dxpl);
- H5Fclose(file);
- } H5E_END_TRY;
- return 1;
-}
-
-/*--------------------------------------------------
- * Benchmark the performance of the regular H5Dwrite
- * with compression
- *--------------------------------------------------
- */
-int
-test_no_compress_write(hid_t fapl_id)
-{
- hid_t file; /* handles */
- hid_t dataspace, dataset;
- hid_t mem_space;
- hsize_t chunk_dims[RANK] ={CHUNK_NX, CHUNK_NY, CHUNK_NZ};
- hid_t dxpl;
- herr_t status;
- int i;
-
- hsize_t start[RANK]; /* Start of hyperslab */
- hsize_t stride[RANK]; /* Stride of hyperslab */
- hsize_t count[RANK]; /* Block count */
- hsize_t block[RANK]; /* Block sizes */
-
- struct timeval timeval_start;
-
- TESTING("H5Dwrite without compression");
-
- if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
- TEST_ERROR;
-
- if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
- TEST_ERROR;
-
- /* Start the timer */
- gettimeofday(&timeval_start,NULL);
-
- /* Reopen the file and dataset */
- if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl_id)) < 0)
- TEST_ERROR;
-
- if((dataset = H5Dopen2(file, REG_NO_COMPRESS_DSET, H5P_DEFAULT)) < 0)
- TEST_ERROR;
-
- if((dataspace = H5Dget_space(dataset)) < 0)
- TEST_ERROR;
-
- start[0] = start[1] = start[2] = 0;
- stride[0] = stride[1] = stride[2] = 1;
- count[0] = count[1] = count[2] = 1;
- block[0] = CHUNK_NX; block[1] = CHUNK_NY; block[2] = CHUNK_NZ;
-
- for(i=0; i<NX; i++) {
- /*
- * Select hyperslab for one chunk in the file
- */
- if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
- TEST_ERROR;
- (start[0])++;
-
- if((status = H5Dwrite(dataset, H5T_NATIVE_INT, mem_space, dataspace,
- H5P_DEFAULT, direct_buf[i])) < 0)
- TEST_ERROR;
- }
-
- /*
- * Close/release resources.
- */
- H5Dclose(dataset);
- H5Sclose(dataspace);
- H5Sclose(mem_space);
- H5Pclose(dxpl);
- H5Fclose(file);
-
- /* Report the performance */
- reportTime(timeval_start, (double)(NX*NY*NZ*sizeof(unsigned int)/MB));
-
- PASSED();
- return 0;
-
-error:
- H5E_BEGIN_TRY {
- H5Dclose(dataset);
- H5Sclose(dataspace);
- H5Sclose(mem_space);
- H5Pclose(dxpl);
- H5Fclose(file);
- } H5E_END_TRY;
- return 1;
-}
-
-/*--------------------------------------------------
- * Benchmark the performance for writing compressed
- * data to a Unix file
- *--------------------------------------------------
- */
-int
-test_unix_write(void)
-{
- int file, flag;
- ssize_t op_size;
- int i;
- struct timeval timeval_start;
-
- TESTING("Write compressed data to a Unix file");
-
- /* create file*/
- flag = O_WRONLY;
-
- /* Start the timer */
- gettimeofday(&timeval_start,NULL);
-
- if ((file=open(FILENAME[1],flag))== -1)
- TEST_ERROR;
-
- /* Write the compressed chunk data repeatedly to cover all the chunks in the
- * dataset, using the direct writing function. */
- for(i=0; i<NX; i++) {
- op_size = write(file, outbuf[i],data_size[i]);
- if (op_size < 0)
- {
- printf(" Error in writing data to file because %s \n", strerror(errno));
- TEST_ERROR;
- }
- else if (op_size == 0)
- {
- printf(" unable to write sufficent data to file because %s \n", strerror(errno));
- TEST_ERROR;
- }
- }
-
- if (close(file) < 0)
- {
- printf(" unable to close the file\n");
- TEST_ERROR;
- }
-
- /* Report the performance */
- reportTime(timeval_start, (double)(total_size/MB));
-
- PASSED();
- return 0;
-
-error:
- return 1;
-}
-
-/*--------------------------------------------------
- * Main function
- *--------------------------------------------------
- */
-int
-main (void)
-{
- hid_t fapl = H5P_DEFAULT;
- int i;
-
- /* Testing setup */
-/* h5_reset();
- fapl = h5_fileaccess();
-
- h5_fixname(FILENAME[0], fapl, filename, sizeof filename);*/
-
- sprintf(filename, "%s.h5", FILENAME[0]);
-
- create_file(fapl);
- test_direct_write_uncompressed_data(fapl);
- test_direct_write_compressed_data(fapl);
- test_no_compress_write(fapl);
- test_compressed_write(fapl);
- test_unix_write();
-
- for(i=0; i<NX; i++) {
- free(outbuf[i]);
- free(direct_buf[i]);
- }
-
-/* h5_cleanup(FILENAME, fapl);*/
- return 0;
-}
-
-#else /* WIN32 / MINGW32 */
-
-int
-main(void)
-{
- printf("Non-POSIX platform. Exiting.\n");
- return EXIT_FAILURE;
-} /* end main() */
-
-#endif /* WIN32 / MINGW32 */
-
-#else /* !H5_HAVE_FILTER_DEFLATE */
-
-/*
- * Function: main
- * Purpose: Dummy main() function for if HDF5 was configured without
- * zlib stuff.
- * Return: EXIT_SUCCESS
- */
-int
-main(void)
-{
- HDfprintf(stdout, "No compression IO performance because zlib was not configured\n");
- return EXIT_SUCCESS;
-}
-
-#endif /* !H5_HAVE_FILTER_DEFLATE */
-