[svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the Dependency line

in the Makefile.

Makefile change only.  Tested on kagiso, to be used to test on cobalt.

17 files changed, 483 insertions, 80 deletions

diff --git a/hl/Makefile.in b/hl/Makefile.in
index c9ccd81..932051e 100755
--- a/hl/Makefile.in
+++ b/hl/Makefile.in
@@ -34,6 +34,32 @@
 # each subdirectory manually.
 #
 # HDF5 High-Level Makefile(.in)
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -300,11 +326,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in
index 0381f16..f8a7f51 100644
--- a/hl/c++/Makefile.in
+++ b/hl/c++/Makefile.in
@@ -30,6 +30,32 @@
 #
 # High-Level API C++ Makefile(.in)
 # 
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -296,11 +322,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/c++/examples/Makefile.am b/hl/c++/examples/Makefile.am
index 4cc97ba..51fabda 100644
--- a/hl/c++/examples/Makefile.am
+++ b/hl/c++/examples/Makefile.am
@@ -36,7 +36,7 @@ EXAMPLEDIR=$(docdir)/hdf5/examples/hl/c++
 
 # How to build programs using h5c++
 $(EXTRA_PROG): $(H5CPP)
-	$(H5CPP) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
+	$(H5CPP) $(H5CCFLAGS) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
 
 # List dependencies for each program.  Normally, automake would take
 # care of this for us, but if we tell automake about the programs it
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index 6b6ce21..7c7c18e 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -31,9 +31,48 @@
 # HDF5 Library Examples Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 # We can't tell automake about example programs, because they need to be
 # built using h5cc (or h5fc, etc.) instead of the standard compilers.
 # This creates some extra work for us.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -293,11 +332,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
@@ -524,7 +563,7 @@ uninstall-am: uninstall-info-am uninstall-local
 
 # How to build programs using h5c++
 $(EXTRA_PROG): $(H5CPP)
-	$(H5CPP) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
+	$(H5CPP) $(H5CCFLAGS) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
 
 # List dependencies for each program.  Normally, automake would take
 # care of this for us, but if we tell automake about the programs it
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index fe33395..60a1611 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -31,6 +31,32 @@
 # HDF5-C++ Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
@@ -317,11 +343,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in
index 63163de..638047e 100644
--- a/hl/c++/test/Makefile.in
+++ b/hl/c++/test/Makefile.in
@@ -30,6 +30,32 @@
 #
 # HDF5-C++ Makefile(.in)
 #
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -312,11 +338,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/examples/Makefile.am b/hl/examples/Makefile.am
index 3642e29..3492368 100644
--- a/hl/examples/Makefile.am
+++ b/hl/examples/Makefile.am
@@ -46,10 +46,10 @@ INSTALL_FILES = ptExampleFL.c ptExampleVL.c
 # Additional dependencies for each program are listed below.
 if BUILD_PARALLEL_CONDITIONAL
 $(EXTRA_PROG): $(H5CC_PP)
-	$(H5CC_PP) $(CFLAGS) -o $@ $(srcdir)/$@.c;
+	$(H5CC_PP) $(H5CCFLAGS) $(CFLAGS) -o $@ $(srcdir)/$@.c;
 else
 $(EXTRA_PROG): $(H5CC)
-	$(H5CC) $(CFLAGS) -o $@ $(srcdir)/$@.c;
+	$(H5CC) $(H5CCFLAGS) $(CFLAGS) -o $@ $(srcdir)/$@.c;
 endif
 
 # ex_lite2 uses a file created by ex_lite1
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 558a9ca..78d6b05 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -31,9 +31,48 @@
 # HDF5 Library Examples Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 # We can't tell automake about example programs, because they need to be
 # built using h5cc (or h5fc, etc.) instead of the standard compilers.
 # This creates some extra work for us.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -293,11 +332,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
@@ -531,9 +570,9 @@ uninstall-am: uninstall-info-am uninstall-local
 
 # Additional dependencies for each program are listed below.
 @BUILD_PARALLEL_CONDITIONAL_TRUE@$(EXTRA_PROG): $(H5CC_PP)
-@BUILD_PARALLEL_CONDITIONAL_TRUE@	$(H5CC_PP) $(CFLAGS) -o $@ $(srcdir)/$@.c;
+@BUILD_PARALLEL_CONDITIONAL_TRUE@	$(H5CC_PP) $(H5CCFLAGS) $(CFLAGS) -o $@ $(srcdir)/$@.c;
 @BUILD_PARALLEL_CONDITIONAL_FALSE@$(EXTRA_PROG): $(H5CC)
-@BUILD_PARALLEL_CONDITIONAL_FALSE@	$(H5CC) $(CFLAGS) -o $@ $(srcdir)/$@.c;
+@BUILD_PARALLEL_CONDITIONAL_FALSE@	$(H5CC) $(H5CCFLAGS) $(CFLAGS) -o $@ $(srcdir)/$@.c;
 
 # ex_lite2 uses a file created by ex_lite1
 ex_lite2.chkexe_: ex_lite1.chkexe_
diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in
index 67f631a..5543cba 100644
--- a/hl/fortran/Makefile.in
+++ b/hl/fortran/Makefile.in
@@ -34,6 +34,32 @@
 # each subdirectory manually.
 #
 # HDF5 High-Level Makefile(.in)
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -300,11 +326,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/fortran/examples/Makefile.am b/hl/fortran/examples/Makefile.am
index a4ff085..54ada7a 100644
--- a/hl/fortran/examples/Makefile.am
+++ b/hl/fortran/examples/Makefile.am
@@ -42,10 +42,10 @@ HDF_FORTRAN=yes
 # Tell automake how to build examples using h5fc
 if BUILD_PARALLEL_CONDITIONAL
 $(EXTRA_PROG): $(H5FC_PP)
-	$(H5FC_PP) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
+	$(H5FC_PP) $(H5CCFLAGS) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
 else
 $(EXTRA_PROG): $(H5FC)
-	$(H5FC) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
+	$(H5FC) $(H5CCFLAGS) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
 endif
 
 # Tell automake how to install examples
diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in
index 5bd9b75..4940f08 100644
--- a/hl/fortran/examples/Makefile.in
+++ b/hl/fortran/examples/Makefile.in
@@ -31,9 +31,48 @@
 # HDF5-Fortran Examples Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 # We can't tell automake about example programs, because they need to be
 # built using h5cc (or h5fc, etc.) instead of the standard compilers.
 # This creates some extra work for us.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -293,11 +332,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
@@ -530,9 +569,9 @@ uninstall-am: uninstall-info-am uninstall-local
 
 # Tell automake how to build examples using h5fc
 @BUILD_PARALLEL_CONDITIONAL_TRUE@$(EXTRA_PROG): $(H5FC_PP)
-@BUILD_PARALLEL_CONDITIONAL_TRUE@	$(H5FC_PP) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
+@BUILD_PARALLEL_CONDITIONAL_TRUE@	$(H5FC_PP) $(H5CCFLAGS) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
 @BUILD_PARALLEL_CONDITIONAL_FALSE@$(EXTRA_PROG): $(H5FC)
-@BUILD_PARALLEL_CONDITIONAL_FALSE@	$(H5FC) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
+@BUILD_PARALLEL_CONDITIONAL_FALSE@	$(H5FC) $(H5CCFLAGS) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
 
 # How to create EXAMPLEDIR if it doesn't already exist
 $(EXAMPLEDIR):
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index 3851d95..5e1d24d 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -31,6 +31,32 @@
 #
 # HDF5 High-Level Fortran Makefile(.in)
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -320,11 +346,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in
index 0a753ce..c14540e 100644
--- a/hl/fortran/test/Makefile.in
+++ b/hl/fortran/test/Makefile.in
@@ -30,6 +30,32 @@
 #
 #
 # HDF5 High-Level Fortran Makefile(.in)
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -319,11 +345,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index 9ad03ca..78dd527 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -31,6 +31,32 @@
 # HDF5 High-Level Library Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
@@ -318,11 +344,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in
index 4bc964f..1ffd677 100644
--- a/hl/test/Makefile.in
+++ b/hl/test/Makefile.in
@@ -32,6 +32,32 @@
 #
 # HDF5 High-Level Test Makefile(.in)
 #
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -336,11 +362,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in
index decf482..6daadd8 100644
--- a/hl/tools/Makefile.in
+++ b/hl/tools/Makefile.in
@@ -30,6 +30,32 @@
 #
 # Tools HDF5 Makefile(.in)
 #
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -297,11 +323,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in
index 902a92c..9074db3 100644
--- a/hl/tools/gif2h5/Makefile.in
+++ b/hl/tools/gif2h5/Makefile.in
@@ -31,6 +31,32 @@
 # HDF5 Library Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -321,11 +347,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.