[svn-r23147] ported revisions 23081:23145 from the trunk

18 files changed, 16 insertions, 274 deletions

diff --git a/hl/c++/examples/CMakeLists.txt b/hl/c++/examples/CMakeLists.txt
index 3034a78..bba06e9 100644
--- a/hl/c++/examples/CMakeLists.txt
+++ b/hl/c++/examples/CMakeLists.txt
@@ -20,17 +20,6 @@ TARGET_LINK_LIBRARIES (
 )
 SET_TARGET_PROPERTIES (ptExampleFL PROPERTIES FOLDER examples/hl/cpp)
 
-ADD_EXECUTABLE (ptExampleVL ${HDF5_HL_CPP_EXAMPLES_SOURCE_DIR}/ptExampleVL.cpp)
-TARGET_NAMING (ptExampleVL ${LIB_TYPE})
-TARGET_LINK_LIBRARIES (
-    ptExampleVL
-    ${HDF5_HL_CPP_LIB_TARGET}
-    ${HDF5_HL_LIB_TARGET}
-    ${HDF5_LIB_TARGET}
-)
-SET_TARGET_PROPERTIES (ptExampleVL PROPERTIES FOLDER examples/hl/cpp)
-
 IF (BUILD_TESTING)
   ADD_TEST (NAME cpp_hl_ex_ptExampleFL COMMAND $<TARGET_FILE:ptExampleFL>)
-  ADD_TEST (NAME cpp_hl_ex_ptExampleVL COMMAND $<TARGET_FILE:ptExampleVL>)
 ENDIF (BUILD_TESTING)
diff --git a/hl/c++/examples/Makefile.am b/hl/c++/examples/Makefile.am
index 5dd5a75..df15257 100644
--- a/hl/c++/examples/Makefile.am
+++ b/hl/c++/examples/Makefile.am
@@ -23,10 +23,10 @@ include $(top_srcdir)/config/commence.am
 
 # These are the programs that 'make all' or 'make prog' will build and
 # which 'make check' will run.  List them in the order they should be run.
-EXAMPLE_PROG=ptExampleFL ptExampleVL
+EXAMPLE_PROG=ptExampleFL
 
 # These are the example files to be installed
-INSTALL_FILES=ptExampleFL.cpp ptExampleVL.cpp
+INSTALL_FILES=ptExampleFL.cpp
 INSTALL_SCRIPT_FILES = run-hlc++-ex.sh
 
 # Tell conclude.am that these are C++ tests.
@@ -45,7 +45,6 @@ $(EXTRA_PROG): $(H5CPP)
 # will try to build them with the normal C++ compiler, not h5c++.  This is
 # an inelegant way of solving the problem, unfortunately.
 ptExampleFL: ptExampleFL.cpp
-ptExampleVL: ptExampleVL.cpp
 
 include $(top_srcdir)/config/examples.am
 include $(top_srcdir)/config/conclude.am
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index bd0edf0..f617fec 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -390,10 +390,10 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5
 
 # These are the programs that 'make all' or 'make prog' will build and
 # which 'make check' will run.  List them in the order they should be run.
-EXAMPLE_PROG = ptExampleFL ptExampleVL
+EXAMPLE_PROG = ptExampleFL
 
 # These are the example files to be installed
-INSTALL_FILES = ptExampleFL.cpp ptExampleVL.cpp
+INSTALL_FILES = ptExampleFL.cpp
 INSTALL_SCRIPT_FILES = run-hlc++-ex.sh
 
 # Tell conclude.am that these are C++ tests.
@@ -651,7 +651,6 @@ $(EXTRA_PROG): $(H5CPP)
 # will try to build them with the normal C++ compiler, not h5c++.  This is
 # an inelegant way of solving the problem, unfortunately.
 ptExampleFL: ptExampleFL.cpp
-ptExampleVL: ptExampleVL.cpp
 
 # How to create EXAMPLEDIR if it doesn't already exist
 $(EXAMPLEDIR):
diff --git a/hl/c++/examples/ptExampleVL.cpp b/hl/c++/examples/ptExampleVL.cpp
deleted file mode 100644
index c3feccd..0000000
--- a/hl/c++/examples/ptExampleVL.cpp
+++ /dev/null
@@ -1,112 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group.                                               *
- * Copyright by the Board of Trustees of the University of Illinois.         *
- * All rights reserved.                                                      *
- *                                                                           *
- * This file is part of HDF5.  The full HDF5 copyright notice, including     *
- * terms governing use, modification, and redistribution, is contained in    *
- * the files COPYING and Copyright.html.  COPYING can be found at the root   *
- * of the source code distribution tree; Copyright.html can be found at the  *
- * root level of an installed copy of the electronic HDF5 document set and   *
- * is linked from the top-level documents page.  It can also be found at     *
- * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
- * access to either file, you may request a copy from help@hdfgroup.org.     *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-#include "H5PacketTable.h"
-
-/*-------------------------------------------------------------------------
- * Packet Table Variable-Length Example
- *
- * Example program that creates a packet table and performs
- * writes and reads.
- *
- *-------------------------------------------------------------------------
- */
-
-int main(void)
-{
-#ifdef VLPT_REMOVED
-    herr_t err;     /* Return value from function calls */
-    hid_t fileID;   /* HDF5 identifier for file */
-    hsize_t count;  /* Number of records in table */
-    int x;          /* Loop variable */
-
-    /* This example has two different sizes of "record": longs and shorts */
-    long longBuffer[5];
-    short shortBuffer[5];
-
-    /* Buffer of hvl_t structs to read back records */
-    hvl_t readBuffer[5];
-
-   /* Initialize buffers */
-    for(x=0; x<5; x++)
-    {
-        longBuffer[x] = -x;
-        shortBuffer[x] = x;
-    }
-
-    /* Create a new HDF5 file */
-    fileID = H5Fcreate("PTcppexampleVL.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
-    if(fileID <0)
-        fprintf(stderr, "Couldn't create file.\n");
-
-    /* Create a variable-length packet table. */
-    VL_PacketTable ptable(fileID, "/examplePacketTable", 1);
-
-    if(! ptable.IsValid())
-        fprintf(stderr, "Unable to create packet table.");
-
-    /* Append five packets to the packet table. */
-    /* In C++, there is no need to package data into hvl_t structs. */
-    err = ptable.AppendPacket( &(longBuffer[0]), sizeof(long));
-    if(err < 0)
-        fprintf(stderr, "Error adding record.");
-    err = ptable.AppendPacket( &(shortBuffer[1]), sizeof(short));
-    if(err < 0)
-        fprintf(stderr, "Error adding record.");
-    err = ptable.AppendPacket( &(longBuffer[2]), sizeof(long));
-    if(err < 0)
-        fprintf(stderr, "Error adding record.");
-    err = ptable.AppendPacket( &(longBuffer[3]), sizeof(long));
-    if(err < 0)
-        fprintf(stderr, "Error adding record.");
-    err = ptable.AppendPacket( &(shortBuffer[4]), sizeof(short));
-    if(err < 0)
-        fprintf(stderr, "Error adding record.");
-
-    /* Get the number of packets in the packet table.  This should be five. */
-    count = ptable.GetPacketCount(err);
-    if(err < 0)
-        fprintf(stderr, "Error getting packet count.");
-
-    printf("Number of packets in packet table after five appends: %d\n", count);
-
-    /* Initialize packet table's "current record" */
-    ptable.ResetIndex();
-
-    /* Iterate through packets, read each one back */
-    for(x=0; x<5; x++)
-    {
-        err = ptable.GetNextPacket( &(readBuffer[x]) );
-        if(err < 0)
-            fprintf(stderr, "Error reading record.");
-
-        printf("Packet %d's length is %d.\n", x, readBuffer[x].len);
-        if(readBuffer[x].len == sizeof(long))
-            printf("Packet %d's value is %d.\n", x, *((long *) readBuffer[x].p) );
-        else
-            printf("Packet %d's value is %d.\n", x, *((short *) readBuffer[x].p) );
-    }
-
-    /* The packet table will close automatically when its object goes */
-    /* out of scope.  */
-
-    err = H5Fclose(fileID);
-    if( err < 0 )
-        fprintf(stderr, "Failed to close file.\n");
-
-#endif /* VLPT_REMOVED */
-    return 0;
-}
-
diff --git a/hl/c++/examples/run-hlc++-ex.sh.in b/hl/c++/examples/run-hlc++-ex.sh.in
index 7742f99..103dd76 100644
--- a/hl/c++/examples/run-hlc++-ex.sh.in
+++ b/hl/c++/examples/run-hlc++-ex.sh.in
@@ -64,9 +64,7 @@ RunTest()
 if [ $? -eq 0 ]
 then
     if (RunTest ptExampleFL &&\
-        rm ptExampleFL &&\
-        RunTest ptExampleVL &&\
-        rm ptExampleVL); then
+        rm ptExampleFL); then
         EXIT_VALUE=${EXIT_SUCCESS}
     else
         EXIT_VALUE=${EXIT_FAILURE}
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index 4dceeb2..fef6449 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -458,7 +458,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
 # Add libtool shared library version numbers to the HDF5 library
 # See libtool versioning documentation online.
 LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 126
+LT_VERS_REVISION = 130
 LT_VERS_AGE = 0
 
 # Include src directory
diff --git a/hl/examples/CMakeLists.txt b/hl/examples/CMakeLists.txt
index c95322c..f9c8922 100644
--- a/hl/examples/CMakeLists.txt
+++ b/hl/examples/CMakeLists.txt
@@ -23,7 +23,6 @@ SET (examples
     ex_lite2
     ex_lite3
     ptExampleFL
-    ptExampleVL
     ex_image1
     ex_image2
     ex_table_01
diff --git a/hl/examples/Makefile.am b/hl/examples/Makefile.am
index 1c51f05..5108c5e 100644
--- a/hl/examples/Makefile.am
+++ b/hl/examples/Makefile.am
@@ -34,7 +34,7 @@ EXAMPLETOPDIR=${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl
 # Don't tell automake about them, because if it knew they were programs,
 # it would try to compile them instead of using the h5cc script.
 # Use the boilerplate in config/examples.am instead.
-EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \
+EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL \
             ex_image1 ex_image2 \
             ex_table_01 ex_table_02 ex_table_03 ex_table_04 \
             ex_table_05 ex_table_06 ex_table_07 ex_table_08 \
@@ -43,7 +43,7 @@ EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \
 
 # Install files
 # List all file that should be installed in examples directory
-INSTALL_FILES = ex_lite1.c ex_lite2.c ex_lite3.c ptExampleFL.c ptExampleVL.c \
+INSTALL_FILES = ex_lite1.c ex_lite2.c ex_lite3.c ptExampleFL.c \
                 ex_image1.c ex_image2.c \
                 ex_table_01.c ex_table_02.c ex_table_03.c ex_table_04.c      \
                 ex_table_05.c ex_table_06.c ex_table_07.c ex_table_08.c      \
@@ -75,7 +75,6 @@ ex_lite1: $(srcdir)/ex_lite1.c
 ex_lite2: $(srcdir)/ex_lite2.c
 ex_lite3: $(srcdir)/ex_lite3.c
 ptExampleFL: $(srcdir)/ptExampleFL.c
-ptExampleVL: $(srcdir)/ptExampleVL.c
 ex_image1: $(srcdir)/ex_image1.c
 ex_image2: $(srcdir)/ex_image2.c
 ex_table01: $(srcdir)/ex_table01.c
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 1794e38..f6126d4 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -398,7 +398,7 @@ EXAMPLETOPDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl
 # Don't tell automake about them, because if it knew they were programs,
 # it would try to compile them instead of using the h5cc script.
 # Use the boilerplate in config/examples.am instead.
-EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \
+EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL \
             ex_image1 ex_image2 \
             ex_table_01 ex_table_02 ex_table_03 ex_table_04 \
             ex_table_05 ex_table_06 ex_table_07 ex_table_08 \
@@ -408,7 +408,7 @@ EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \
 
 # Install files
 # List all file that should be installed in examples directory
-INSTALL_FILES = ex_lite1.c ex_lite2.c ex_lite3.c ptExampleFL.c ptExampleVL.c \
+INSTALL_FILES = ex_lite1.c ex_lite2.c ex_lite3.c ptExampleFL.c \
                 ex_image1.c ex_image2.c \
                 ex_table_01.c ex_table_02.c ex_table_03.c ex_table_04.c      \
                 ex_table_05.c ex_table_06.c ex_table_07.c ex_table_08.c      \
@@ -677,7 +677,6 @@ ex_lite1: $(srcdir)/ex_lite1.c
 ex_lite2: $(srcdir)/ex_lite2.c
 ex_lite3: $(srcdir)/ex_lite3.c
 ptExampleFL: $(srcdir)/ptExampleFL.c
-ptExampleVL: $(srcdir)/ptExampleVL.c
 ex_image1: $(srcdir)/ex_image1.c
 ex_image2: $(srcdir)/ex_image2.c
 ex_table01: $(srcdir)/ex_table01.c
diff --git a/hl/examples/ptExampleVL.c b/hl/examples/ptExampleVL.c
deleted file mode 100644
index 310aa07..0000000
--- a/hl/examples/ptExampleVL.c
+++ /dev/null
@@ -1,126 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group.                                               *
- * Copyright by the Board of Trustees of the University of Illinois.         *
- * All rights reserved.                                                      *
- *                                                                           *
- * This file is part of HDF5.  The full HDF5 copyright notice, including     *
- * terms governing use, modification, and redistribution, is contained in    *
- * the files COPYING and Copyright.html.  COPYING can be found at the root   *
- * of the source code distribution tree; Copyright.html can be found at the  *
- * root level of an installed copy of the electronic HDF5 document set and   *
- * is linked from the top-level documents page.  It can also be found at     *
- * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
- * access to either file, you may request a copy from help@hdfgroup.org.     *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-#include "hdf5.h"
-#include "hdf5_hl.h"
-#include <stdlib.h>
-
-/*-------------------------------------------------------------------------
- * Packet Table Variable-Length Example
- *
- * Example program that creates a variable-length packet table and performs
- * writes and reads.
- *
- *-------------------------------------------------------------------------
- */
-
-int main(void)
-{
-#ifdef VLPT_REMOVED
- hid_t          fid;        /* File identifier */
- hid_t          ptable;     /* Packet table identifier */
-
- herr_t         err;        /* Function return status */
- hsize_t        count;      /* Number of records in the table */
- int            x;          /* Loop variable */
-
-    /* Buffers to hold data */
- hvl_t writeBuffer[5];
- hvl_t readBuffer[5];
-
-    /* This example has two different sizes of "record": longs and shorts */
- long longBuffer[5];
- short shortBuffer[5];
-
-   /* Initialize buffers */
- for(x=0; x<5; x++)
- {
-     longBuffer[x] = -x;
-     shortBuffer[x] = x;
- }
-
-    /* Fill the write buffer with a mix of longs and shorts */
-    /* We need to supply the length of each record and a pointer to */
-    /* the beginning of each record. */
- writeBuffer[0].len = sizeof(long);
- writeBuffer[0].p = &(longBuffer[0]);
- writeBuffer[1].len = sizeof(short);
- writeBuffer[1].p = &(shortBuffer[1]);
- writeBuffer[2].len = sizeof(long);
- writeBuffer[2].p = &(longBuffer[2]);
- writeBuffer[3].len = sizeof(long);
- writeBuffer[3].p = &(longBuffer[3]);
- writeBuffer[4].len = sizeof(short);
- writeBuffer[4].p = &(shortBuffer[4]);
-
-    /* Create a file using default properties */
- fid=H5Fcreate("packet_table_VLexample.h5",H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT);
-
-    /* Create a variable-length packet table within the file */
- ptable = H5PTcreate_vl(fid, "Packet Test Dataset", (hsize_t)1);
- if(ptable == H5I_INVALID_HID)
-     goto out;
-
-    /* Write the entire buffer to the packet table */
- err = H5PTappend(ptable, (hsize_t)5, writeBuffer );
- if(err < 0)
-     goto out;
-
-    /* Get the number of packets in the packet table.  This should be five. */
- err = H5PTget_num_packets(ptable, &count);
- if(err < 0)
-     goto out;
-
- printf("Number of packets in packet table after five appends: %d\n", count);
-
-    /* Read all five packets back */
- err = H5PTread_packets(ptable, (hsize_t)0, (hsize_t)5, readBuffer );
- if(err < 0)
-    goto out;
-
- for(x=0; x<5; x++)
- {
-    printf("Packet %d's length is %d\n", x, readBuffer[x].len);
-    if(readBuffer[x].len == sizeof(long))
-        printf("Packet %d's value is %d\n", x, *( (long *) readBuffer[x].p) );
-    else
-        printf("Packet %d's value is %d\n", x, *( (short *) readBuffer[x].p) );
- }
-
-    /* Before we close the packet table, we must free the memory that */
-    /* the pointers in readBuffer point to. */
- err = H5PTfree_vlen_readbuff(ptable, (hsize_t)5, readBuffer);
- if(err < 0)
-     goto out;
-
-    /* Close the packet table */
- err = H5PTclose(ptable);
- if(err < 0)
-     goto out;
-
-    /* Close the file */
- H5Fclose(fid);
-#endif /* VLPT_REMOVED */
-
- return 0;
-
-#ifdef VLPT_REMOVED
- out: /* An error has occurred.  Clean up and exit. */
-    fprintf(stderr, "An error has occurred!\n");
-    H5PTclose(ptable);
-    H5Fclose(fid);
-    return -1;
-#endif /* VLPT_REMOVED */
-}
diff --git a/hl/examples/run-hlc-ex.sh.in b/hl/examples/run-hlc-ex.sh.in
index a82e591..a79f67a 100644
--- a/hl/examples/run-hlc-ex.sh.in
+++ b/hl/examples/run-hlc-ex.sh.in
@@ -76,8 +76,6 @@ then
         rm ex_lite3 &&\
         RunTest ptExampleFL &&\
         rm ptExampleFL &&\
-        RunTest ptExampleVL &&\
-        rm ptExampleVL &&\
         RunTest ex_image1 &&\
         rm ex_image1 &&\
         RunTest ex_image2 &&\
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index 3cd2b38..85faf98 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -474,7 +474,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
 # Add libtool shared library version numbers to the HDF5 library
 # See libtool versioning documentation online.
 LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 126
+LT_VERS_REVISION = 130
 LT_VERS_AGE = 0
 INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/hl/src -I$(top_builddir)/hl/src \
          -I$(top_srcdir)/fortran/src -I$(top_builddir)/fortran/src
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index 84ff1ef..1be8e50 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -457,7 +457,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
 # Add libtool shared library version numbers to the HDF5 library
 # See libtool versioning documentation online.
 LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 126
+LT_VERS_REVISION = 130
 LT_VERS_AGE = 0
 
 # This library is our main target.
diff --git a/hl/test/CMakeLists.txt b/hl/test/CMakeLists.txt
index b22d99e..a85d271 100644
--- a/hl/test/CMakeLists.txt
+++ b/hl/test/CMakeLists.txt
@@ -81,7 +81,7 @@ HL_ADD_TEST (test_dset_opt "")
 HL_ADD_TEST (test_image "image8.txt;sepia.pal;earth.pal;image24pixel.txt;image24plane.txt;usa.wri")
 HL_ADD_TEST (test_lite "dtype_file.txt")
 HL_ADD_TEST (test_packet "")
-HL_ADD_TEST (test_table "test_table_be.hdf5;test_table_cray.hdf5;test_table_le.hdf5")
+HL_ADD_TEST (test_table "test_table_be.h5;test_table_cray.h5;test_table_le.h5")
 
 # --------------------------------------------------------------------
 # This executable is used to generate test files for the test_ds test.
diff --git a/hl/test/test_table.c b/hl/test/test_table.c
index cdae768..488cbe2 100644
--- a/hl/test/test_table.c
+++ b/hl/test/test_table.c
@@ -19,9 +19,9 @@
 #include "H5srcdir.h"
 #include "H5TBpublic.h"
 
-#define TEST_FILE_BE "test_table_be.hdf5"
-#define TEST_FILE_LE "test_table_le.hdf5"
-#define TEST_FILE_CRAY "test_table_cray.hdf5"
+#define TEST_FILE_BE "test_table_be.h5"
+#define TEST_FILE_LE "test_table_le.h5"
+#define TEST_FILE_CRAY "test_table_cray.h5"
 
 
 /*-------------------------------------------------------------------------
diff --git a/hl/test/test_table_be.hdf5 b/hl/test/test_table_be.h5
index 3639695..3639695 100644
--- a/hl/test/test_table_be.hdf5
+++ b/hl/test/test_table_be.h5
diff --git a/hl/test/test_table_cray.hdf5 b/hl/test/test_table_cray.h5
index d22dce3..d22dce3 100644
--- a/hl/test/test_table_cray.hdf5
+++ b/hl/test/test_table_cray.h5
diff --git a/hl/test/test_table_le.hdf5 b/hl/test/test_table_le.h5
index 6c330fd..6c330fd 100644
--- a/hl/test/test_table_le.hdf5
+++ b/hl/test/test_table_le.h5