[svn-r15033] Purpose:

Improvement.

Description:
src/libhdf5.settings was the initial configure summary and is installed.
Then configure is changed to dump a summary of the configure settings to
the output and also append it to src/libhdf5.settings.  That created
two different output formats and duplicated information.  This is the
initial attempt to clean up this confusion and unify the output format.

It is decided to use the src/libhdf5.settings template as the unified means.
This requires more macros symbols be defined. The following symbols are
all related to generating the src/libhdf5.settings file.

AC_SUBST(EXTERNAL_FILTERS)
AC_SUBST(MPE) MPE=no
AC_SUBST(STATIC_EXEC) STATIC_EXEC=no
AC_SUBST(HDF_FORTRAN) HDF_FORTRAN=no
AC_SUBST(FC) HDF_FORTRAN=no
AC_SUBST(HDF_CXX) HDF_CXX=no
AC_SUBST(CXX) HDF_CXX=no
AC_SUBST(HDF5_HL) HDF5_HL=yes
AC_SUBST(GPFS) GPFS=no
AC_SUBST(LINUX_LFS) LINUX_LFS=no
AC_SUBST(INSTRUMENT) INSTRUMENT=no
AC_SUBST(CODESTACK) CODESTACK=no
AC_SUBST(HAVE_DMALLOC) HAVE_DMALLOC=no
AC_SUBST(DIRECT_VFD) DIRECT_VFD=no
AC_SUBST(THREADSAFE) THREADSAFE=no
AC_SUBST(STATIC_SHARED)
AC_SUBST(enable_shared)
AC_SUBST(enable_static)
AC_SUBST(UNAME_INFO) UNAME_INFO=`uname -a`

The src/libhdf5.settings.in has CONDITIONAL's added to it too.  The
untrue conditions turned into a "#" and these lines are cleaned by the 
post processing script.

Platform tested:
h5committest on kagiso, smirom and linew. (smirom had failures not due to
my changes.)

14 files changed, 214 insertions, 6 deletions

diff --git a/hl/Makefile.in b/hl/Makefile.in
index b899cb4..bdec033 100755
--- a/hl/Makefile.in
+++ b/hl/Makefile.in
@@ -99,6 +99,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -114,6 +115,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -122,6 +124,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -134,6 +137,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -142,7 +146,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -153,12 +161,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -198,13 +208,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -237,6 +250,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in
index 5e40943..9772091 100644
--- a/hl/c++/Makefile.in
+++ b/hl/c++/Makefile.in
@@ -95,6 +95,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -110,6 +111,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -118,6 +120,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -130,6 +133,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -138,7 +142,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -149,12 +157,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -194,13 +204,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -233,6 +246,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index 40ecee9..b67cab4 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -89,6 +89,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -104,6 +105,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -112,6 +114,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -124,6 +127,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -132,7 +136,13 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+
+# Tell conclude.am that these are C++ tests.
+HDF_CXX = yes
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -143,12 +153,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -188,13 +200,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -227,6 +242,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
@@ -308,9 +325,6 @@ TEST_PROG = ptExampleFL ptExampleVL
 # These are the example files to be installed
 INSTALL_FILES = ptExampleFL.cpp ptExampleVL.cpp
 
-# Tell conclude.am that these are C++ tests.
-HDF_CXX = yes
-
 # Where to install examples
 EXAMPLEDIR = $(docdir)/hdf5/examples/hl/c++
 
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index 2994b68..dc56b8b 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -114,6 +114,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -129,6 +130,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -137,6 +139,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -149,6 +152,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -157,7 +161,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -168,12 +176,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -213,13 +223,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -252,6 +265,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in
index d2ebc6d..a5dbd60 100644
--- a/hl/c++/test/Makefile.in
+++ b/hl/c++/test/Makefile.in
@@ -105,6 +105,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -120,6 +121,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -128,6 +130,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -140,6 +143,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -148,7 +152,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -159,12 +167,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -204,13 +214,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -243,6 +256,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 7715f0e..0eaf0ee 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -89,6 +89,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -104,6 +105,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -112,6 +114,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -124,6 +127,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -132,7 +136,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -143,12 +151,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -188,13 +198,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -227,6 +240,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in
index e2dc998..fb640c4 100644
--- a/hl/fortran/Makefile.in
+++ b/hl/fortran/Makefile.in
@@ -99,6 +99,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -114,6 +115,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -122,6 +124,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -134,6 +137,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -142,7 +146,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -153,12 +161,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -198,13 +208,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -237,6 +250,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in
index 7d6ed65..a10d84f 100644
--- a/hl/fortran/examples/Makefile.in
+++ b/hl/fortran/examples/Makefile.in
@@ -89,6 +89,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -104,6 +105,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -112,6 +114,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -124,6 +127,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -132,7 +136,13 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+
+# Mark this directory as part of the Fortran API
+HDF_FORTRAN = yes
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -143,12 +153,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -188,13 +200,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -227,6 +242,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
@@ -314,9 +331,6 @@ TEST_PROG = exlite
 # List files to be installed here
 INSTALL_FILES = 
 
-# Mark this directory as part of the Fortran API
-HDF_FORTRAN = yes
-
 # Tell automake how to install examples
 EXAMPLEDIR = $(docdir)/hdf5/examples/hl/fortran
 
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index 79cfb11..dde1469 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -119,6 +119,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -134,6 +135,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -142,6 +144,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -154,6 +157,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -162,7 +166,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -173,12 +181,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -218,13 +228,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -257,6 +270,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in
index d500c7d..b04d8c7 100644
--- a/hl/fortran/test/Makefile.in
+++ b/hl/fortran/test/Makefile.in
@@ -109,6 +109,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -124,6 +125,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -132,6 +134,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -144,6 +147,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -152,7 +156,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -163,12 +171,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -208,13 +218,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -247,6 +260,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index 584301a..d75699d 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -115,6 +115,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -130,6 +131,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -138,6 +140,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -150,6 +153,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -158,7 +162,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -169,12 +177,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -214,13 +224,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -253,6 +266,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in
index e250f51..c997cea 100644
--- a/hl/test/Makefile.in
+++ b/hl/test/Makefile.in
@@ -125,6 +125,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -140,6 +141,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -148,6 +150,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -160,6 +163,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -168,7 +172,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -179,12 +187,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -224,13 +234,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -263,6 +276,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in
index 9c58bbe..ec37f61 100644
--- a/hl/tools/Makefile.in
+++ b/hl/tools/Makefile.in
@@ -96,6 +96,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -111,6 +112,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -119,6 +121,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -131,6 +134,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -139,7 +143,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -150,12 +158,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -195,13 +205,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -234,6 +247,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in
index dc491fb..adba1b7 100644
--- a/hl/tools/gif2h5/Makefile.in
+++ b/hl/tools/gif2h5/Makefile.in
@@ -118,6 +118,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -133,6 +134,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -141,6 +143,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -153,6 +156,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -161,7 +165,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -172,12 +180,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -217,13 +227,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -256,6 +269,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@