[svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files.

Tested: h5committest

18 files changed, 233 insertions, 219 deletions

diff --git a/hl/Makefile.in b/hl/Makefile.in
index c471eb7..dddd693 100644
--- a/hl/Makefile.in
+++ b/hl/Makefile.in
@@ -77,7 +77,7 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 TESTS =
 subdir = hl
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -147,7 +147,7 @@ am__relativize = \
     dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
   done; \
   reldir="$$dir2"
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -165,12 +165,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -444,6 +441,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -828,7 +829,7 @@ build-check-clean:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -854,7 +855,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -878,7 +879,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -888,7 +889,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -978,7 +979,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1008,7 +1009,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in
index e190dfb..4a33b33 100644
--- a/hl/c++/Makefile.in
+++ b/hl/c++/Makefile.in
@@ -73,7 +73,7 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 TESTS =
 subdir = hl/c++
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -143,7 +143,7 @@ am__relativize = \
     dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
   done; \
   reldir="$$dir2"
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -161,12 +161,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -438,6 +435,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -818,7 +819,7 @@ check-clean ::
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -844,7 +845,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -868,7 +869,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -878,7 +879,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -968,7 +969,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -998,7 +999,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index 46d4a98..6c9e63a 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -75,10 +75,10 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 	$(top_srcdir)/config/commence.am \
 	$(top_srcdir)/config/conclude.am \
 	$(top_srcdir)/config/examples.am
-TESTS =
+TESTS = $(TEST_PROG)
 subdir = hl/c++/examples
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -109,7 +109,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -127,12 +127,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -408,8 +405,7 @@ EXAMPLEDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl/c++
 
 # Assume that all tests in this directory are examples, and tell
 # conclude.am when to build them.
-EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG)
-EXTRA_PROG = $(EXAMPLE_PROG)
+EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA)
 
 # We need to tell automake what to clean
 MOSTLYCLEANFILES = *.raw *.meta *.o
@@ -426,6 +422,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -719,7 +719,7 @@ installcheck-local:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -745,7 +745,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -769,7 +769,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -779,7 +779,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -869,7 +869,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -899,7 +899,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index 0923487..68c14e7 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -80,7 +80,7 @@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \
 TESTS =
 subdir = hl/c++/src
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -176,7 +176,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -194,12 +194,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1)
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -494,6 +491,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -878,7 +879,7 @@ help:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -904,7 +905,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -928,7 +929,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -938,7 +939,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1028,7 +1029,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1058,7 +1059,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in
index d71f1ce..0213f38 100644
--- a/hl/c++/test/Makefile.in
+++ b/hl/c++/test/Makefile.in
@@ -74,10 +74,10 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 # Shared C++ libraries aren't universally supported.
 @CXX_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
 check_PROGRAMS = $(am__EXEEXT_1)
-TESTS = $(check_PROGRAMS)
+TESTS = $(am__EXEEXT_1)
 subdir = hl/c++/test
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -142,7 +142,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -160,12 +160,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1)
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -449,6 +446,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -771,7 +772,7 @@ help:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -797,7 +798,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -821,7 +822,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -831,7 +832,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -921,7 +922,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -951,7 +952,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/examples/Makefile.am b/hl/examples/Makefile.am
index ae65a3b..1c51f05 100644
--- a/hl/examples/Makefile.am
+++ b/hl/examples/Makefile.am
@@ -22,7 +22,7 @@
 include $(top_srcdir)/config/commence.am
 
 if BUILD_PARALLEL_CONDITIONAL
-  TEST_PROG_PARA =
+  EXAMPLE_PROG_PARA =
 endif
 
 # Example directory
@@ -34,7 +34,7 @@ EXAMPLETOPDIR=${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl
 # Don't tell automake about them, because if it knew they were programs,
 # it would try to compile them instead of using the h5cc script.
 # Use the boilerplate in config/examples.am instead.
-TEST_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \
+EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \
             ex_image1 ex_image2 \
             ex_table_01 ex_table_02 ex_table_03 ex_table_04 \
             ex_table_05 ex_table_06 ex_table_07 ex_table_08 \
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 7a3ef18..3e9b549 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -78,7 +78,7 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 TESTS =
 subdir = hl/examples
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -109,7 +109,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -127,12 +127,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -390,7 +387,7 @@ TRACE = perl $(top_srcdir)/bin/trace
 # .chklog files are output from those tests.
 # *.clog are from the MPE option.
 CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5
-@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = 
+@BUILD_PARALLEL_CONDITIONAL_TRUE@EXAMPLE_PROG_PARA = 
 
 # Example directory
 # Note: no '/' after DESTDIR.  Explanation in commence.am
@@ -401,7 +398,7 @@ EXAMPLETOPDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl
 # Don't tell automake about them, because if it knew they were programs,
 # it would try to compile them instead of using the h5cc script.
 # Use the boilerplate in config/examples.am instead.
-TEST_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \
+EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \
             ex_image1 ex_image2 \
             ex_table_01 ex_table_02 ex_table_03 ex_table_04 \
             ex_table_05 ex_table_06 ex_table_07 ex_table_08 \
@@ -424,8 +421,7 @@ INSTALL_TOP_SCRIPT_FILES = run-hl-ex.sh
 
 # Assume that all tests in this directory are examples, and tell
 # conclude.am when to build them.
-EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG)
-EXTRA_PROG = $(EXAMPLE_PROG)
+EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA)
 
 # We need to tell automake what to clean
 MOSTLYCLEANFILES = *.raw *.meta *.o
@@ -442,6 +438,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -759,7 +759,7 @@ installcheck-local:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -785,7 +785,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -809,7 +809,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -819,7 +819,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -909,7 +909,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -939,7 +939,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in
index ffa3c96..6fe288c 100644
--- a/hl/fortran/Makefile.in
+++ b/hl/fortran/Makefile.in
@@ -77,7 +77,7 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 TESTS =
 subdir = hl/fortran
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -147,7 +147,7 @@ am__relativize = \
     dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
   done; \
   reldir="$$dir2"
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -165,12 +165,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -442,6 +439,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -822,7 +823,7 @@ check-clean ::
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -848,7 +849,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -872,7 +873,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -882,7 +883,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -972,7 +973,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1002,7 +1003,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/fortran/examples/Makefile.am b/hl/fortran/examples/Makefile.am
index 4286fe3..f94f031 100644
--- a/hl/fortran/examples/Makefile.am
+++ b/hl/fortran/examples/Makefile.am
@@ -23,7 +23,7 @@ include $(top_srcdir)/config/commence.am
 
 # Compile parallel fortran examples only if parallel is enabled
 if BUILD_PARALLEL_CONDITIONAL
-   TEST_PROG_PARA=
+   EXAMPLE_PROG_PARA=
 endif
 
 # These are the programs that 'make all' or 'make tests' will build and
@@ -31,7 +31,7 @@ endif
 # be run.
 # We don't tell automake about these programs so that it doesn't try to
 # compile them with the regular fortran compiler.
-TEST_PROG=exlite ex_ds1
+EXAMPLE_PROG=exlite ex_ds1
 
 # List files to be installed here
 INSTALL_FILES= exlite.f90 ex_ds1.f90
diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in
index f298a91..b7d8538 100644
--- a/hl/fortran/examples/Makefile.in
+++ b/hl/fortran/examples/Makefile.in
@@ -79,7 +79,7 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 TESTS =
 subdir = hl/fortran/examples
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -110,7 +110,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -128,12 +128,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -393,14 +390,14 @@ TRACE = perl $(top_srcdir)/bin/trace
 CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5
 
 # Compile parallel fortran examples only if parallel is enabled
-@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = 
+@BUILD_PARALLEL_CONDITIONAL_TRUE@EXAMPLE_PROG_PARA = 
 
 # These are the programs that 'make all' or 'make tests' will build and
 # that 'make check' will run.  List them in the order in which they should
 # be run.
 # We don't tell automake about these programs so that it doesn't try to
 # compile them with the regular fortran compiler.
-TEST_PROG = exlite ex_ds1
+EXAMPLE_PROG = exlite ex_ds1
 
 # List files to be installed here
 INSTALL_FILES = exlite.f90 ex_ds1.f90
@@ -416,8 +413,7 @@ EXAMPLEDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl/fortran
 
 # Assume that all tests in this directory are examples, and tell
 # conclude.am when to build them.
-EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG)
-EXTRA_PROG = $(EXAMPLE_PROG)
+EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA)
 
 # We need to tell automake what to clean
 MOSTLYCLEANFILES = *.raw *.meta *.o
@@ -434,6 +430,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -722,7 +722,7 @@ installcheck-local:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -748,7 +748,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -772,7 +772,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -782,7 +782,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -872,7 +872,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -902,7 +902,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index 42cacb6..3af3abd 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -80,7 +80,7 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 TESTS =
 subdir = hl/fortran/src
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -191,7 +191,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -210,12 +210,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1)
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -513,6 +510,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -922,7 +923,7 @@ H5TBff.lo:          $(srcdir)/H5TBff.f90
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -948,7 +949,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -972,7 +973,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -982,7 +983,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1072,7 +1073,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1102,7 +1103,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in
index 4b10b12..7e69b79 100644
--- a/hl/fortran/test/Makefile.in
+++ b/hl/fortran/test/Makefile.in
@@ -76,10 +76,10 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 # of the HDF5 library.  We do this by passing the -static flag to the linker.
 @FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
 check_PROGRAMS = $(am__EXEEXT_1)
-TESTS = $(check_PROGRAMS)
+TESTS = $(am__EXEEXT_1)
 subdir = hl/fortran/test
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -152,7 +152,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -174,12 +174,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1)
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -466,6 +463,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -781,7 +782,7 @@ help:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -807,7 +808,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -831,7 +832,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -841,7 +842,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -931,7 +932,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -961,7 +962,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index 2569447..532eaab 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -77,7 +77,7 @@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \
 TESTS =
 subdir = hl/src
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -173,7 +173,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -193,12 +193,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -489,6 +486,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -879,7 +880,7 @@ help:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -905,7 +906,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -929,7 +930,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -939,7 +940,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1029,7 +1030,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1059,7 +1060,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in
index ead41c8..f98b2bc 100644
--- a/hl/test/Makefile.in
+++ b/hl/test/Makefile.in
@@ -76,10 +76,10 @@ DIST_COMMON = $(srcdir)/H5srcdir_str.h.in $(srcdir)/Makefile.am \
 	$(top_srcdir)/config/conclude.am COPYING
 check_PROGRAMS = $(am__EXEEXT_1)
 @BUILD_ALL_CONDITIONAL_TRUE@noinst_PROGRAMS = $(am__EXEEXT_2)
-TESTS = $(check_PROGRAMS)
+TESTS = $(am__EXEEXT_1)
 subdir = hl/test
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -173,7 +173,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -196,12 +196,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -490,6 +487,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -848,7 +849,7 @@ help:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -874,7 +875,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -898,7 +899,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -908,7 +909,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -998,7 +999,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1028,7 +1029,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in
index 1ed5439..4a428ce 100644
--- a/hl/tools/Makefile.in
+++ b/hl/tools/Makefile.in
@@ -73,7 +73,7 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
 TESTS =
 subdir = hl/tools
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
@@ -144,7 +144,7 @@ am__relativize = \
     dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
   done; \
   reldir="$$dir2"
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -162,12 +162,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -440,6 +437,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -804,7 +805,7 @@ help:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -830,7 +831,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -854,7 +855,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -864,7 +865,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -954,7 +955,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -984,7 +985,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/tools/gif2h5/Makefile.am b/hl/tools/gif2h5/Makefile.am
index 895c75f..d1d416a 100644
--- a/hl/tools/gif2h5/Makefile.am
+++ b/hl/tools/gif2h5/Makefile.am
@@ -25,7 +25,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/src
 
 # These are our main targets, the tools
 
-TEST_SCRIPT=$(srcdir)/h52giftest.sh
+TEST_SCRIPT=h52giftest.sh
 check_SCRIPTS=$(TEST_SCRIPT)
 
 bin_PROGRAMS=gif2h5 h52gif
diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in
index 145877f..8b98276 100644
--- a/hl/tools/gif2h5/Makefile.in
+++ b/hl/tools/gif2h5/Makefile.in
@@ -68,20 +68,21 @@ POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
-	$(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \
+	$(srcdir)/h52giftest.sh.in $(top_srcdir)/bin/depcomp \
+	$(top_srcdir)/bin/mkinstalldirs \
 	$(top_srcdir)/config/commence.am \
 	$(top_srcdir)/config/conclude.am
 bin_PROGRAMS = gif2h5$(EXEEXT) h52gif$(EXEEXT)
 noinst_PROGRAMS = h52gifgentst$(EXEEXT)
-TESTS = $(check_SCRIPTS)
+TESTS = $(TEST_SCRIPT)
 subdir = hl/tools/gif2h5
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/src/H5config.h
-CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_FILES = h52giftest.sh
 CONFIG_CLEAN_VPATH_FILES =
 am__installdirs = "$(DESTDIR)$(bindir)"
 PROGRAMS = $(bin_PROGRAMS) $(noinst_PROGRAMS)
@@ -157,7 +158,7 @@ am__tty_colors_dummy = \
   am__color_tests=no
 am__tty_colors = $(am__tty_colors_dummy)
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
 AMTAR = @AMTAR@
 
@@ -175,12 +176,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AS = @AS@
-
-# Set the paths for AFS installs of autotools for Linux machines
-# Ideally, these tools should never be needed during the build.
-AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf
-AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader
-AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
 AWK = @AWK@
 BYTESEX = @BYTESEX@
 CC = @CC@
@@ -443,7 +441,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 *.gif
 INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/src
 
 # These are our main targets, the tools
-TEST_SCRIPT = $(srcdir)/h52giftest.sh
+TEST_SCRIPT = h52giftest.sh
 check_SCRIPTS = $(TEST_SCRIPT)
 
 # Add h52gif and gif2h5 specific linker flags here
@@ -468,6 +466,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
 PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
         $(EXTRA_PROG)
 
+chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_EXTENSIONS = .sh
+SH_LOG_COMPILER = $(SHELL)
+AM_SH_LOG_FLAGS = 
 TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
 TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
 TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
@@ -507,6 +509,8 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
 $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 $(am__aclocal_m4_deps):
+h52giftest.sh: $(top_builddir)/config.status $(srcdir)/h52giftest.sh.in
+	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
 install-binPROGRAMS: $(bin_PROGRAMS)
 	@$(NORMAL_INSTALL)
 	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
@@ -854,7 +858,7 @@ help:
 # build files in this directory.
 build-lib: $(LIB)
 build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(TESTS)
+build-tests: $(LIB) $(PROGS) $(chk_TESTS)
 
 # General rule for recursive building targets.
 # BUILT_SOURCES contain targets that need to be built before anything else
@@ -880,7 +884,7 @@ check-clean ::
 # Tell Automake to build tests when the user types `make all' (this is
 # not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
 # Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
 
 # make install-doc doesn't do anything outside of doc directory, but
 # Makefiles should recognize it.
@@ -904,7 +908,7 @@ check-install: installcheck
 # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
 # The timestamps give a rough idea how much time the tests use.
 #
-# Note that targets in TESTS (defined above) will be built when the user
+# Note that targets in chk_TESTS (defined above) will be built when the user
 # types 'make tests' or 'make check', but only programs in TEST_PROG,
 # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
 check-TESTS: test
@@ -914,7 +918,7 @@ test _test:
 	@$(MAKE) build-check-p
 
 # Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(TESTS)
+build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
 	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1004,7 +1008,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
 	fi
 
 # Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(TESTS)
+build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
 	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
 	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
 	fi
@@ -1034,7 +1038,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS)
 	fi
 
 # Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(TESTS)
+check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
 	@for vfd in $(VFD_LIST) dummy; do                                     \
 	    if test $$vfd != dummy; then                                      \
 	        echo "============================";                          \
diff --git a/hl/tools/gif2h5/h52giftest.sh b/hl/tools/gif2h5/h52giftest.sh.in
index 186b369..186b369 100644
--- a/hl/tools/gif2h5/h52giftest.sh
+++ b/hl/tools/gif2h5/h52giftest.sh.in