[svn-r15003] Purpose:

Improvement.

Description:
src/libhdf5.settings was the initial configure summary and is installed.
Then configure is changed to dump a summary of the configure settings to
the output and also append it to src/libhdf5.settings.  That created
two different output formats and duplicated information.  This is the
initial attempt to clean up this confusion and unify the output format.

It is decided to use the src/libhdf5.settings template as the unified means.
This requires more macros symbols be defined. The following symbols are
all related to generating the src/libhdf5.settings file.

AC_SUBST(EXTERNAL_FILTERS)
AC_SUBST(MPE) MPE=no
AC_SUBST(STATIC_EXEC) STATIC_EXEC=no
AC_SUBST(HDF_FORTRAN) HDF_FORTRAN=no
AC_SUBST(FC) HDF_FORTRAN=no
AC_SUBST(HDF_CXX) HDF_CXX=no
AC_SUBST(CXX) HDF_CXX=no
AC_SUBST(HDF5_HL) HDF5_HL=yes
AC_SUBST(GPFS) GPFS=no
AC_SUBST(LINUX_LFS) LINUX_LFS=no
AC_SUBST(INSTRUMENT) INSTRUMENT=no
AC_SUBST(CODESTACK) CODESTACK=no
AC_SUBST(HAVE_DMALLOC) HAVE_DMALLOC=no
AC_SUBST(DIRECT_VFD) DIRECT_VFD=no
AC_SUBST(THREADSAFE) THREADSAFE=no
AC_SUBST(STATIC_SHARED)
AC_SUBST(enable_shared)
AC_SUBST(enable_static)
AC_SUBST(UNAME_INFO) UNAME_INFO=`uname -a`

The src/libhdf5.settings.in has CONDITIONAL's added to it too.  The
untrue conditions turned into a "#" and these lines are cleaned by the 
post processing script.

Platform tested:
h5committest on kagiso, smirom and linew.

14 files changed, 214 insertions, 6 deletions

diff --git a/hl/Makefile.in b/hl/Makefile.in
index 24c065a..11a74e8 100755
--- a/hl/Makefile.in
+++ b/hl/Makefile.in
@@ -99,6 +99,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -114,6 +115,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -122,6 +124,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -134,6 +137,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -142,7 +146,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -154,12 +162,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -199,13 +209,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -238,6 +251,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in
index c1dcb55..2929bc3 100644
--- a/hl/c++/Makefile.in
+++ b/hl/c++/Makefile.in
@@ -95,6 +95,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -110,6 +111,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -118,6 +120,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -130,6 +133,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -138,7 +142,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -150,12 +158,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -195,13 +205,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -234,6 +247,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index 69f3ff7..17d1b95 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -89,6 +89,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -104,6 +105,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -112,6 +114,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -124,6 +127,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -132,7 +136,13 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+
+# Tell conclude.am that these are C++ tests.
+HDF_CXX = yes
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -144,12 +154,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -189,13 +201,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -228,6 +243,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
@@ -309,9 +326,6 @@ TEST_PROG = ptExampleFL ptExampleVL
 # These are the example files to be installed
 INSTALL_FILES = ptExampleFL.cpp ptExampleVL.cpp
 
-# Tell conclude.am that these are C++ tests.
-HDF_CXX = yes
-
 # Where to install examples
 EXAMPLEDIR = $(docdir)/hdf5/examples/hl/c++
 
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index 45acc52..197b0f3 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -114,6 +114,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -129,6 +130,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -137,6 +139,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -149,6 +152,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -157,7 +161,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -169,12 +177,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -214,13 +224,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -253,6 +266,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in
index 61f5805..64dd8d5 100644
--- a/hl/c++/test/Makefile.in
+++ b/hl/c++/test/Makefile.in
@@ -105,6 +105,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -120,6 +121,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -128,6 +130,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -140,6 +143,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -148,7 +152,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -160,12 +168,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -205,13 +215,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -244,6 +257,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 5ec9e7d..7b84e50 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -89,6 +89,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -104,6 +105,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -112,6 +114,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -124,6 +127,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -132,7 +136,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -144,12 +152,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -189,13 +199,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -228,6 +241,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in
index 92953f3..fcfd9ff 100644
--- a/hl/fortran/Makefile.in
+++ b/hl/fortran/Makefile.in
@@ -99,6 +99,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -114,6 +115,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -122,6 +124,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -134,6 +137,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -142,7 +146,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -154,12 +162,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -199,13 +209,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -238,6 +251,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in
index 8f6322a..ad1d557 100644
--- a/hl/fortran/examples/Makefile.in
+++ b/hl/fortran/examples/Makefile.in
@@ -89,6 +89,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -104,6 +105,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -112,6 +114,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -124,6 +127,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -132,7 +136,13 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+
+# Mark this directory as part of the Fortran API
+HDF_FORTRAN = yes
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -144,12 +154,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -189,13 +201,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -228,6 +243,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
@@ -315,9 +332,6 @@ TEST_PROG = exlite
 # List files to be installed here
 INSTALL_FILES = 
 
-# Mark this directory as part of the Fortran API
-HDF_FORTRAN = yes
-
 # Tell automake how to install examples
 EXAMPLEDIR = $(docdir)/hdf5/examples/hl/fortran
 
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index 5c2ad70..e2ed9a6 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -119,6 +119,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -134,6 +135,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -142,6 +144,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -154,6 +157,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -162,7 +166,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -174,12 +182,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -219,13 +229,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -258,6 +271,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in
index 3391805..eda9cf7 100644
--- a/hl/fortran/test/Makefile.in
+++ b/hl/fortran/test/Makefile.in
@@ -109,6 +109,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -124,6 +125,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -132,6 +134,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -144,6 +147,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -152,7 +156,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -164,12 +172,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -209,13 +219,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -248,6 +261,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index b5b1640..f4341ab 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -115,6 +115,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -130,6 +131,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -138,6 +140,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -150,6 +153,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -158,7 +162,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -170,12 +178,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -215,13 +225,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -254,6 +267,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in
index 78b4f26..87e0b61 100644
--- a/hl/test/Makefile.in
+++ b/hl/test/Makefile.in
@@ -125,6 +125,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -140,6 +141,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -148,6 +150,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -160,6 +163,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -168,7 +172,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -180,12 +188,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -225,13 +235,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -264,6 +277,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in
index a8654bb..a92fa11 100644
--- a/hl/tools/Makefile.in
+++ b/hl/tools/Makefile.in
@@ -96,6 +96,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -111,6 +112,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -119,6 +121,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -131,6 +134,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -139,7 +143,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -151,12 +159,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -196,13 +206,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -235,6 +248,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@
diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in
index 4441cfe..aba052e 100644
--- a/hl/tools/gif2h5/Makefile.in
+++ b/hl/tools/gif2h5/Makefile.in
@@ -117,6 +117,7 @@ CC_VERSION = @CC_VERSION@
 # but which shouldn't be exported to h5cc for building other programs.
 CFLAGS = @CFLAGS@ @H5_CFLAGS@
 CLEARFILEBUF = @CLEARFILEBUF@
+CODESTACK = @CODESTACK@
 CONFIG_DATE = @CONFIG_DATE@
 CONFIG_MODE = @CONFIG_MODE@
 CONFIG_USER = @CONFIG_USER@
@@ -132,6 +133,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
 DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@
+DIRECT_VFD = @DIRECT_VFD@
 DSYMUTIL = @DSYMUTIL@
 DUMPBIN = @DUMPBIN@
 DYNAMIC_DIRS = @DYNAMIC_DIRS@
@@ -140,6 +142,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
+EXTERNAL_FILTERS = @EXTERNAL_FILTERS@
 
 # Make sure that these variables are exported to the Makefiles
 F9XMODEXT = @F9XMODEXT@
@@ -152,6 +155,7 @@ FCLIBS = @FCLIBS@
 FGREP = @FGREP@
 FILTERS = @FILTERS@
 FSEARCH_DIRS = @FSEARCH_DIRS@
+GPFS = @GPFS@
 GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
@@ -160,7 +164,11 @@ H5_FCFLAGS = @H5_FCFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
+HAVE_DMALLOC = @HAVE_DMALLOC@
+HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF_CXX = @HDF_CXX@
+HDF_FORTRAN = @HDF_FORTRAN@
 HID_T = @HID_T@
 HL = @HL@
 HL_FOR = @HL_FOR@
@@ -172,12 +180,14 @@ INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
 INSTALL_SCRIPT = @INSTALL_SCRIPT@
 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT = @INSTRUMENT@
 INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
 LD = @LD@
 LDFLAGS = @LDFLAGS@
 LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LIBTOOL = @LIBTOOL@
+LINUX_LFS = @LINUX_LFS@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
@@ -217,13 +227,16 @@ SET_MAKE = @SET_MAKE@
 # configure's automatic SHELL detection may not work on the build machine.
 SHELL = /bin/sh
 SIZE_T = @SIZE_T@
+STATIC_EXEC = @STATIC_EXEC@
 STATIC_SHARED = @STATIC_SHARED@
 STRICT_FORMAT_CHECKS = @STRICT_FORMAT_CHECKS@
 STRIP = @STRIP@
 TESTPARALLEL = @TESTPARALLEL@
+THREADSAFE = @THREADSAFE@
 TIME = @TIME@
 TR = @TR@
 TRACE_API = @TRACE_API@
+UNAME_INFO = @UNAME_INFO@
 USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
 USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
 USE_FILTER_NBIT = @USE_FILTER_NBIT@
@@ -256,6 +269,8 @@ datadir = @datadir@
 datarootdir = @datarootdir@
 docdir = $(exec_prefix)/doc
 dvidir = @dvidir@
+enable_shared = @enable_shared@
+enable_static = @enable_static@
 exec_prefix = @exec_prefix@
 host = @host@
 host_alias = @host_alias@