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authorAllen Byrne <byrn@hdfgroup.org>2016-02-29 02:43:00 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2016-02-29 02:43:00 (GMT)
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treeebb2b75ece8852e8a58804631c0004f06a9bba9f /java/examples/groups/H5Ex_G_Visit.java
parenta1617b7cdbe14173fcf690b4627059fa4528c19b (diff)
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[svn-r29226] HDFFV-9552: merge in java code.
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+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/************************************************************
+ This example shows how to recursively traverse a file
+ using H5Ovisit and H5Lvisit. The program prints all of
+ the objects in the file specified in FILE, then prints all
+ of the links in that file. The default file used by this
+ example implements the structure described in the User's
+ Guide, chapter 4, figure 26.
+ ************************************************************/
+package examples.groups;
+
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+import hdf.hdf5lib.callbacks.H5L_iterate_cb;
+import hdf.hdf5lib.callbacks.H5L_iterate_t;
+import hdf.hdf5lib.callbacks.H5O_iterate_cb;
+import hdf.hdf5lib.callbacks.H5O_iterate_t;
+import hdf.hdf5lib.structs.H5L_info_t;
+import hdf.hdf5lib.structs.H5O_info_t;
+
+import java.util.ArrayList;
+
+public class H5Ex_G_Visit {
+
+ private static String FILE = "groups/h5ex_g_visit.h5";
+
+ public static void main(String[] args) {
+ try {
+ (new H5Ex_G_Visit()).VisitGroup();
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ }
+
+ private void VisitGroup() throws Exception {
+
+ long file_id = -1;
+
+ try {
+ // Open file
+ file_id = H5.H5Fopen(FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+
+ // Begin iteration using H5Ovisit
+ System.out.println("Objects in the file:");
+ H5O_iterate_t iter_data = new H5O_iter_data();
+ H5O_iterate_cb iter_cb = new H5O_iter_callback();
+ H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb, iter_data);
+ System.out.println();
+ // Repeat the same process using H5Lvisit
+ H5L_iterate_t iter_data2 = new H5L_iter_data();
+ H5L_iterate_cb iter_cb2 = new H5L_iter_callback();
+ System.out.println("Links in the file:");
+ H5.H5Lvisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb2, iter_data2);
+
+ }
+ catch (Exception e) {
+ e.printStackTrace();
+ }
+ finally {
+ // Close and release resources.
+ if (file_id >= 0)
+ H5.H5Fclose(file_id);
+ }
+ }
+
+ /************************************************************
+ * Operator function for H5Lvisit. This function simply retrieves the info for the object the current link points
+ * to, and calls the operator function for H5Ovisit.
+ ************************************************************/
+
+ private class idata {
+ public String link_name = null;
+ public int link_type = -1;
+
+ idata(String name, int type) {
+ this.link_name = name;
+ this.link_type = type;
+ }
+ }
+
+ private class H5L_iter_data implements H5L_iterate_t {
+ public ArrayList<idata> iterdata = new ArrayList<idata>();
+ }
+
+ private class H5L_iter_callback implements H5L_iterate_cb {
+ public int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data) {
+
+ idata id = new idata(name, info.type);
+ ((H5L_iter_data) op_data).iterdata.add(id);
+
+ H5O_info_t infobuf;
+ int ret = 0;
+ try {
+ // Get type of the object and display its name and type. The name of the object is passed to this
+ // function by the Library.
+ infobuf = H5.H5Oget_info_by_name(group, name, HDF5Constants.H5P_DEFAULT);
+ H5O_iterate_cb iter_cbO = new H5O_iter_callback();
+ H5O_iterate_t iter_dataO = new H5O_iter_data();
+ ret = iter_cbO.callback(group, name, infobuf, iter_dataO);
+ }
+ catch (Exception e) {
+ e.printStackTrace();
+ }
+
+ return ret;
+ }
+ }
+
+ private class H5O_iter_data implements H5O_iterate_t {
+ public ArrayList<idata> iterdata = new ArrayList<idata>();
+ }
+
+ private class H5O_iter_callback implements H5O_iterate_cb {
+ public int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data) {
+ idata id = new idata(name, info.type);
+ ((H5O_iter_data) op_data).iterdata.add(id);
+
+ System.out.print("/"); /* Print root group in object path */
+
+ // Check if the current object is the root group, and if not print the full path name and type.
+
+ if (name.charAt(0) == '.') /* Root group, do not print '.' */
+ System.out.println(" (Group)");
+ else if (info.type == HDF5Constants.H5O_TYPE_GROUP)
+ System.out.println(name + " (Group)");
+ else if (info.type == HDF5Constants.H5O_TYPE_DATASET)
+ System.out.println(name + " (Dataset)");
+ else if (info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE)
+ System.out.println(name + " (Datatype)");
+ else
+ System.out.println(name + " (Unknown)");
+
+ return 0;
+ }
+ }
+
+}