Merge pull request #1220 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:1.10/master to 1.10/master

* commit '21eef8a98ee6949c69d79c6c4d87fc8e4e38dc29': (354 commits)
  Commit version with new release date.
  Add example packaging option and fix html5 issues
  Commit version with new release date.
  Commit files changed by autogen.sh.
  Merge pull request #1208 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
  Merge pull request #1207 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
  Merge pull request #1203 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
  Commit version with new release date. Commit new generated H5version.h including #defines for H5_USE_110_API.
  Correct nested c-style comment.
  Merge pull request #1197 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:hdf5_1_10 to hdf5_1_10
  Merge pull request #1194 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
  Updated the H5Dread/write_chunk() release note.
  Added a release note for the H5Dread/write_chunk() API calls.
  Update Intel Fortran version for Windows 10.
  RELEASE.txt updates. Version change for 1.10.3 release.
  Revised entry on CVE issues
  Added notes about CVE issues
  Update version for HDF5 1.10.3 release.
  Add placeholder for performance improvement in RELEASE.txt
  updated fortran fixes
  ...

1 files changed, 293 insertions, 38 deletions

diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index 7c1ff5b..9c62538 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -214,7 +214,7 @@ import hdf.hdf5lib.structs.H5O_info_t;
  * exception handlers to print out the HDF-5 error stack.
  * <hr>
  *
- * @version HDF5 1.10.2 <BR>
+ * @version HDF5 1.10.3 <BR>
  *          <b>See also: <a href ="./hdf.hdf5lib.HDFArray.html"> hdf.hdf5lib.HDFArray</a> </b><BR>
  *          <a href ="./hdf.hdf5lib.HDF5Constants.html"> hdf.hdf5lib.HDF5Constants</a><BR>
  *          <a href ="./hdf.hdf5lib.HDF5CDataTypes.html"> hdf.hdf5lib.HDF5CDataTypes</a><BR>
@@ -237,7 +237,7 @@ public class H5 implements java.io.Serializable {
      *
      * Make sure to update the versions number when a different library is used.
      */
-    public final static int LIB_VERSION[] = { 1, 10, 2 };
+    public final static int LIB_VERSION[] = { 1, 10, 3 };
 
     public final static String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib";
 
@@ -1276,6 +1276,38 @@ public class H5 implements java.io.Serializable {
 
     // ////////////////////////////////////////////////////////////
     // //
+    // H5AC: Cache Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // No public Functions
+
+    // ////////////////////////////////////////////////////////////
+    // //
+    // H5B: B-link-tree Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // No public Functions
+
+    // ////////////////////////////////////////////////////////////
+    // //
+    // H5B2: v2 B-tree Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // No public Functions
+
+    // ////////////////////////////////////////////////////////////
+    // //
+    // H5C: Cache Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // No public Functions
+
+    // ////////////////////////////////////////////////////////////
+    // //
     // H5D: Datasets Interface Functions //
     // //
     // ////////////////////////////////////////////////////////////
@@ -1714,20 +1746,15 @@ public class H5 implements java.io.Serializable {
             status = H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
                     (double[]) obj, isCriticalPinning);
         }
-        else if (H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) {
+        else if ((H5.H5Tdetect_class(mem_type_id, HDF5Constants.H5T_REFERENCE) && (is1D && (dataClass.getComponentType() == String.class))) || H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) {
             log.trace("H5Dread_reg_ref");
             status = H5Dread_reg_ref(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
                     (String[]) obj);
         }
         else if (is1D && (dataClass.getComponentType() == String.class)) {
             log.trace("H5Dread_string type");
-            if (H5.H5Tis_variable_str(mem_type_id)) {
-                status = H5Dread_VLStrings(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (Object[]) obj);
-            }
-            else {
-                status = H5Dread_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+            status = H5Dread_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
                         (String[]) obj);
-            }
         }
         else {
             // Create a data buffer to hold the data into a Java Array
@@ -1947,7 +1974,7 @@ public class H5 implements java.io.Serializable {
 
         Class dataClass = obj.getClass();
         if (!dataClass.isArray()) {
-            throw (new HDF5JavaException("H5Dread: data is not an array"));
+            throw (new HDF5JavaException("H5Dwrite: data is not an array"));
         }
 
         String cname = dataClass.getName();
@@ -1980,13 +2007,8 @@ public class H5 implements java.io.Serializable {
         }
         else if (is1D && (dataClass.getComponentType() == String.class)) {
             log.trace("H5Dwrite_string type");
-            if (H5.H5Tis_variable_str(mem_type_id)) {
-                status = H5Dwrite_VLStrings(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (Object[]) obj);
-            }
-            else {
-                status = H5Dwrite_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
+            status = H5Dwrite_string(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id,
                         (String[]) obj);
-            }
         }
         else {
             HDFArray theArray = new HDFArray(obj);
@@ -2052,6 +2074,9 @@ public class H5 implements java.io.Serializable {
     public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id, long mem_space_id,
             long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
 
+    public synchronized static native int H5DwriteVL(long dataset_id, long mem_type_id, long mem_space_id,
+            long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
+
     /**
      * H5Dwrite_VLStrings writes a (partial) variable length String dataset, specified by its identifier dataset_id, from
      * the application memory buffer buf into the file.
@@ -2109,6 +2134,10 @@ public class H5 implements java.io.Serializable {
 
     // /////// unimplemented ////////
     // H5_DLL herr_t H5Ddebug(hid_t dset_id);
+    // H5_DLL herr_t H5Dget_chunk_storage_size(hid_t dset_id, const hsize_t *offset, hsize_t *chunk_bytes);
+    // H5_DLL herr_t H5Dformat_convert(hid_t dset_id);
+    // H5_DLL herr_t H5Dget_chunk_index_type(hid_t did, H5D_chunk_index_t *idx_type);
+
     // herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id,
     //                  size_t dst_buf_size, void *dst_buf, H5D_gather_func_t op, void *op_data);
     // herr_t H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id, hid_t dst_space_id, void *dst_buf);
@@ -2912,12 +2941,22 @@ public class H5 implements java.io.Serializable {
     public synchronized static native void H5Fget_mdc_logging_status(long file_id, boolean[] mdc_logging_status)
             throws HDF5LibraryException, NullPointerException;
 
-
-
     // /////// unimplemented ////////
+    // H5_DLL herr_t H5Fget_eoa(hid_t file_id, haddr_t *eoa);
+    // H5_DLL herr_t H5Fincrement_filesize(hid_t file_id, hsize_t increment);
     // ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len);
     // herr_t H5Fget_metadata_read_retry_info(hid_t file_id, H5F_retry_info_t *info);
     // ssize_t H5Fget_free_sections(hid_t file_id, H5F_mem_t type, size_t nsects, H5F_sect_info_t *sect_info/*out*/);
+    // H5_DLL herr_t H5Fset_libver_bounds(hid_t file_id, H5F_libver_t low, H5F_libver_t high);
+    // H5_DLL herr_t H5Fformat_convert(hid_t fid);
+    // H5_DLL herr_t H5Freset_page_buffering_stats(hid_t file_id);
+    // H5_DLL herr_t H5Fget_page_buffering_stats(hid_t file_id, unsigned accesses[2],
+    //     unsigned hits[2], unsigned misses[2], unsigned evictions[2], unsigned bypasses[2]);
+    // H5_DLL herr_t H5Fget_mdc_image_info(hid_t file_id, haddr_t *image_addr, hsize_t *image_size);
+    // #ifdef H5_HAVE_PARALLEL
+    //   H5_DLL herr_t H5Fset_mpi_atomicity(hid_t file_id, hbool_t flag);
+    //   H5_DLL herr_t H5Fget_mpi_atomicity(hid_t file_id, hbool_t *flag);
+    // #endif /* H5_HAVE_PARALLEL */
 
     // /**
     // * H5Fget_vfd_handle returns a pointer to the file handle from the
@@ -2971,6 +3010,41 @@ public class H5 implements java.io.Serializable {
 
     // ////////////////////////////////////////////////////////////
     // //
+    // H5FD: File Driver Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // /////// unimplemented ////////
+    // H5_DLL hid_t H5FDregister(const H5FD_class_t *cls);
+    // H5_DLL herr_t H5FDunregister(hid_t driver_id);
+    // H5_DLL H5FD_t *H5FDopen(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr);
+    // H5_DLL herr_t H5FDclose(H5FD_t *file);
+    // H5_DLL int H5FDcmp(const H5FD_t *f1, const H5FD_t *f2);
+    // H5_DLL int H5FDquery(const H5FD_t *f, unsigned long *flags);
+    // H5_DLL haddr_t H5FDalloc(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size);
+    // H5_DLL herr_t H5FDfree(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size);
+    // H5_DLL haddr_t H5FDget_eoa(H5FD_t *file, H5FD_mem_t type);
+    // H5_DLL herr_t H5FDset_eoa(H5FD_t *file, H5FD_mem_t type, haddr_t eoa);
+    // H5_DLL haddr_t H5FDget_eof(H5FD_t *file, H5FD_mem_t type);
+    // H5_DLL herr_t H5FDget_vfd_handle(H5FD_t *file, hid_t fapl, void**file_handle);
+    // H5_DLL herr_t H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, void *buf/*out*/);
+    // H5_DLL herr_t H5FDwrite(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, const void *buf);
+    // H5_DLL herr_t H5FDflush(H5FD_t *file, hid_t dxpl_id, hbool_t closing);
+    // H5_DLL herr_t H5FDtruncate(H5FD_t *file, hid_t dxpl_id, hbool_t closing);
+    // H5_DLL herr_t H5FDlock(H5FD_t *file, hbool_t rw);
+    // H5_DLL herr_t H5FDunlock(H5FD_t *file);
+    // H5_DLL herr_t H5FDdriver_query(hid_t driver_id, unsigned long *flags/*out*/);
+
+    // ////////////////////////////////////////////////////////////
+    // //
+    // H5FS: File Free Space Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // No public Functions
+
+    // ////////////////////////////////////////////////////////////
+    // //
     // H5G: Group Interface Functions //
     // //
     // ////////////////////////////////////////////////////////////
@@ -3408,6 +3482,30 @@ public class H5 implements java.io.Serializable {
 
     // ////////////////////////////////////////////////////////////
     // //
+    // H5HF: Fractal Heap Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // No public Functions
+
+    // ////////////////////////////////////////////////////////////
+    // //
+    // H5HG: Global Heap Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // No public Functions
+
+    // ////////////////////////////////////////////////////////////
+    // //
+    // H5HL: Local Heap Interface Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // No public Functions
+
+    // ////////////////////////////////////////////////////////////
+    // //
     // H5I: HDF5 1.8 Identifier Interface API Functions //
     // //
     // ////////////////////////////////////////////////////////////
@@ -4033,6 +4131,15 @@ public class H5 implements java.io.Serializable {
     //        H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
     //        void *buf/*out*/, size_t size, hid_t lapl_id);
 
+    // ////////////////////////////////////////////////////////////
+    // //
+    // H5MM: Memory Management Interface API Functions //
+    // //
+    // ////////////////////////////////////////////////////////////
+
+    // /////// unimplemented ////////
+    // typedef void *(*H5MM_allocate_t)(size_t size, void *alloc_info);
+    // typedef void (*H5MM_free_t)(void *mem, void *free_info);
 
     // ////////////////////////////////////////////////////////////
     // //
@@ -4173,7 +4280,27 @@ public class H5 implements java.io.Serializable {
      * @exception NullPointerException
      *                - name is null.
      **/
-    public synchronized static native H5O_info_t H5Oget_info(long loc_id) throws HDF5LibraryException,
+    public static H5O_info_t H5Oget_info(long loc_id) throws HDF5LibraryException,
+            NullPointerException {
+        return H5Oget_info(loc_id, HDF5Constants.H5O_INFO_ALL);
+    }
+
+    /**
+     * H5Oget_info retrieves the metadata for an object specified by an identifier.
+     *
+     * @param loc_id
+     *            IN: Identifier for target object
+     * @param fields
+     *            IN: Object fields to select
+     *
+     * @return object information
+     *
+     * @exception HDF5LibraryException
+     *                - Error from the HDF-5 Library.
+     * @exception NullPointerException
+     *                - name is null.
+     **/
+    public synchronized static native H5O_info_t H5Oget_info(long loc_id, int fields) throws HDF5LibraryException,
             NullPointerException;
 
     /**
@@ -4200,8 +4327,39 @@ public class H5 implements java.io.Serializable {
      * @exception NullPointerException
      *                - name is null.
      **/
+    public static H5O_info_t H5Oget_info_by_idx(long loc_id, String group_name, int idx_type,
+            int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException {
+        return H5Oget_info_by_idx(loc_id, group_name, idx_type, order, n, HDF5Constants.H5O_INFO_ALL, lapl_id);
+    }
+
+    /**
+     * H5Oget_info_by_idx retrieves the metadata for an object, identifying the object by an index position.
+     *
+     * @param loc_id
+     *            IN: File or group identifier
+     * @param group_name
+     *            IN: Name of group, relative to loc_id, in which object is located
+     * @param idx_type
+     *            IN: Type of index by which objects are ordered
+     * @param order
+     *            IN: Order of iteration within index
+     * @param n
+     *            IN: Object to open
+     * @param fields
+     *            IN: Object fields to select
+     * @param lapl_id
+     *            IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
+     *            H5P_DEFAULT.)
+     *
+     * @return object information
+     *
+     * @exception HDF5LibraryException
+     *                - Error from the HDF-5 Library.
+     * @exception NullPointerException
+     *                - name is null.
+     **/
     public synchronized static native H5O_info_t H5Oget_info_by_idx(long loc_id, String group_name, int idx_type,
-            int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
+            int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException;
 
     /**
      * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name.
@@ -4221,7 +4379,32 @@ public class H5 implements java.io.Serializable {
      * @exception NullPointerException
      *                - name is null.
      **/
-    public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id)
+    public static H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id)
+            throws HDF5LibraryException, NullPointerException {
+        return H5Oget_info_by_name(loc_id, name, HDF5Constants.H5O_INFO_ALL, lapl_id);
+    }
+
+    /**
+     * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name.
+     *
+     * @param loc_id
+     *            IN: File or group identifier specifying location of group in which object is located
+     * @param name
+     *            IN: Relative name of group
+     * @param fields
+     *            IN: Object fields to select
+     * @param lapl_id
+     *            IN: Access property list identifier for the link pointing to the object (Not currently used; pass as
+     *            H5P_DEFAULT.)
+     *
+     * @return object information
+     *
+     * @exception HDF5LibraryException
+     *                - Error from the HDF-5 Library.
+     * @exception NullPointerException
+     *                - name is null.
+     **/
+    public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, int fields, long lapl_id)
             throws HDF5LibraryException, NullPointerException;
 
     /**
@@ -4298,8 +4481,37 @@ public class H5 implements java.io.Serializable {
      * @exception NullPointerException
      *                - name is null.
      **/
+    public static int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_cb op, H5O_iterate_t op_data)
+            throws HDF5LibraryException, NullPointerException {
+        return H5Ovisit(obj_id, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL);
+    }
+
+    /**
+     * H5Ovisit recursively visits all objects accessible from a specified object.
+     *
+     * @param obj_id
+     *            IN: Identifier of the object at which the recursive iteration begins.
+     * @param idx_type
+     *            IN: Type of index
+     * @param order
+     *            IN: Order of iteration within index
+     * @param op
+     *            IN: Callback function passing data regarding the object to the calling application
+     * @param op_data
+     *            IN: User-defined pointer to data required by the application for its processing of the object
+     * @param fields
+     *            IN: Object fields to select
+     *
+     * @return returns the return value of the first operator that returns a positive value, or zero if all members were
+     *         processed with no operator returning non-zero.
+     *
+     * @exception HDF5LibraryException
+     *                - Error from the HDF-5 Library.
+     * @exception NullPointerException
+     *                - name is null.
+     **/
     public synchronized static native int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_cb op,
-            H5O_iterate_t op_data) throws HDF5LibraryException, NullPointerException;
+            H5O_iterate_t op_data, int fields) throws HDF5LibraryException, NullPointerException;
 
     /**
      * H5Ovisit_by_name recursively visits all objects starting from a specified object.
@@ -4327,8 +4539,41 @@ public class H5 implements java.io.Serializable {
      * @exception NullPointerException
      *                - name is null.
      **/
+    public static int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order,
+            H5O_iterate_cb op, H5O_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException {
+        return H5Ovisit_by_name(loc_id, obj_name, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL, lapl_id);
+    }
+
+    /**
+     * H5Ovisit_by_name recursively visits all objects starting from a specified object.
+     *
+     * @param loc_id
+     *            IN: File or group identifier
+     * @param obj_name
+     *            IN: Relative path to the object
+     * @param idx_type
+     *            IN: Type of index
+     * @param order
+     *            IN: Order of iteration within index
+     * @param op
+     *            IN: Callback function passing data regarding the object to the calling application
+     * @param op_data
+     *            IN: User-defined pointer to data required by the application for its processing of the object
+     * @param fields
+     *            IN: Object fields to select
+     * @param lapl_id
+     *            IN: Link access property list identifier
+     *
+     * @return returns the return value of the first operator that returns a positive value, or zero if all members were
+     *         processed with no operator returning non-zero.
+     *
+     * @exception HDF5LibraryException
+     *                - Error from the HDF-5 Library.
+     * @exception NullPointerException
+     *                - name is null.
+     **/
     public synchronized static native int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order,
-            H5O_iterate_cb op, H5O_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException;
+            H5O_iterate_cb op, H5O_iterate_t op_data, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException;
 
 
     /**
@@ -4450,6 +4695,9 @@ public class H5 implements java.io.Serializable {
     public synchronized static native void H5Orefresh(long object_id) throws HDF5LibraryException;
 
     // /////// unimplemented ////////
+    // H5_DLL herr_t H5Odisable_mdc_flushes(hid_t object_id);
+    // H5_DLL herr_t H5Oenable_mdc_flushes(hid_t object_id);
+    // H5_DLL herr_t H5Oare_mdc_flushes_disabled(hid_t object_id, hbool_t *are_disabled);
 
     // ////////////////////////////////////////////////////////////
     // //
@@ -7273,9 +7521,15 @@ public class H5 implements java.io.Serializable {
     // herr_t H5Pset_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr);
     // herr_t H5Pset_core_write_tracking(hid_t fapl_id, hbool_t is_enabled, size_t page_size);
     // herr_t H5Pget_core_write_tracking(hid_t fapl_id, hbool_t *is_enabled, size_t *page_size);
+    // #ifdef H5_HAVE_PARALLEL
     // herr_t H5Pset_all_coll_metadata_ops(hid_t accpl_id, hbool_t is_collective);
+    // H5_DLL herr_t H5Pget_all_coll_metadata_ops(hid_t plist_id, hbool_t *is_collective);
     // herr_t H5Pset_coll_metadata_write(hid_t fapl_id, hbool_t is_collective);
     // herr_t H5Pget_coll_metadata_write(hid_t fapl_id, hbool_t *is_collective);
+    // #endif /* H5_HAVE_PARALLEL */
+    // H5_DLL herr_t H5Pset_mdc_image_config(hid_t plist_id, H5AC_cache_image_config_t *config_ptr);
+    // H5_DLL herr_t H5Pget_mdc_image_config(hid_t plist_id, H5AC_cache_image_config_t *config_ptr /*out*/);
+    // H5_DLL herr_t H5Pset_page_buffer_size(hid_t plist_id, size_t buf_size, unsigned min_meta_per, unsigned min_raw_per);
     // herr_t H5Pget_page_buffer_size(hid_t fapl_id, size_t *buf_size, unsigned *min_meta_perc, unsigned *min_raw_perc);
     // herr_t H5Pset_object_flush_cb (hid_t fapl_id, H5F_flush_cb_t func, void *user_data);
     // herr_t H5Pget_object_flush_cb (hid_t fapl_id, H5F_flush_cb_t *func, void **user_data);
@@ -7297,6 +7551,11 @@ public class H5 implements java.io.Serializable {
     // *free_info )
     // herr_t H5Pget_type_conv_cb(hid_t plist, H5T_conv_except_func_t *func, void **op_data)
     // herr_t H5Pset_type_conv_cb( hid_t plist, H5T_conv_except_func_t func, void *op_data)
+    // #ifdef H5_HAVE_PARALLEL
+    // H5_DLL herr_t H5Pget_mpio_actual_chunk_opt_mode(hid_t plist_id, H5D_mpio_actual_chunk_opt_mode_t *actual_chunk_opt_mode);
+    // H5_DLL herr_t H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t *actual_io_mode);
+    // H5_DLL herr_t H5Pget_mpio_no_collective_cause(hid_t plist_id, uint32_t *local_no_collective_cause, uint32_t *global_no_collective_cause);
+    // #endif /* H5_HAVE_PARALLEL */
 
     // Link creation property list (LCPL) routines //
 
@@ -7314,21 +7573,6 @@ public class H5 implements java.io.Serializable {
     // herr_t H5Pget_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t *func, void **op_data);
     // herr_t H5Pset_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t func, void *op_data);
 
-
-    // Other/Older property list routines //
-    // herr_t H5Pget_fapl_mpio( int fapl_id, MPI_Comm *comm, MPI_Info *info )
-    // herr_t H5Pset_fapl_mpio( int fapl_id, MPI_Comm comm, MPI_Info info )
-
-    // herr_t H5Pget_fapl_mpiposix( int fapl_id, MPI_Comm *comm, hbool_t *use_gpfs_hints )
-    // herr_t H5Pset_fapl_mpiposix( int fapl_id, MPI_Comm comm, hbool_t use_gpfs_hints )
-
-    // herr_t H5Pget_dxpl_mpio( hid_t dxpl_id, H5FD_mpio_xfer_t *xfer_mode )
-    // herr_t H5Pset_dxpl_mpio( hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode )
-    // herr_t H5Pset_dxpl_mpio_chunk_opt (hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode)
-    // herr_t H5Pset_dxpl_mpio_chunk_opt_num (hid_t dxpl_id, unsigned num_chunk_per_proc)
-    // herr_t H5Pset_dxpl_mpio_chunk_opt_ratio (hid_t dxpl_id, unsigned percent_proc_per_chunk)
-    // herr_t H5Pset_dxpl_mpio_collective_opt (hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mode)
-
     // ////////////////////////////////////////////////////////////
     // //
     // H5PL: HDF5 1.8 Plugin API Functions //
@@ -8252,6 +8496,17 @@ public class H5 implements java.io.Serializable {
      public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException;
 
     // /////// unimplemented ////////
+    // #ifdef NEW_HYPERSLAB_API
+    // H5_DLL hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op,
+    //                                  const hsize_t start[],
+    //                                  const hsize_t _stride[],
+    //                                  const hsize_t count[],
+    //                                  const hsize_t _block[]);
+    // H5_DLL herr_t H5Sselect_select(hid_t space1_id, H5S_seloper_t op,
+    //                                  hid_t space2_id);
+    // H5_DLL hid_t H5Scombine_select(hid_t space1_id, H5S_seloper_t op,
+    //                                  hid_t space2_id);
+    // #endif /* NEW_HYPERSLAB_API */