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| author | Dana Robinson <derobins@hdfgroup.org> | 2021-05-06 21:07:08 (GMT) |
|---|---|---|
| committer | Dana Robinson <derobins@hdfgroup.org> | 2021-05-06 21:07:08 (GMT) |
| commit | f2cb86499efa2fe6f44ca2f4e93ea62e952d0fb0 (patch) | |
| tree | 8c26de9faca9450513bf771d36ded0593b66419a /java/src/hdf/hdf5lib | |
| parent | 457b199a383865febbd52045b343b902ef383512 (diff) | |
| download | hdf5-f2cb86499efa2fe6f44ca2f4e93ea62e952d0fb0.zip hdf5-f2cb86499efa2fe6f44ca2f4e93ea62e952d0fb0.tar.gz hdf5-f2cb86499efa2fe6f44ca2f4e93ea62e952d0fb0.tar.bz2 | |
Brings java wrapper updates from develop
The wrappers compile but fail tests due to some missing develop
functionality
Diffstat (limited to 'java/src/hdf/hdf5lib')
50 files changed, 5039 insertions, 856 deletions
diff --git a/java/src/hdf/hdf5lib/CMakeLists.txt b/java/src/hdf/hdf5lib/CMakeLists.txt index f3d9b8d..5651031 100644 --- a/java/src/hdf/hdf5lib/CMakeLists.txt +++ b/java/src/hdf/hdf5lib/CMakeLists.txt @@ -42,7 +42,7 @@ set (HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES set (HDF5_JAVA_HDF_HDF5_EXCEPTIONS_SOURCES exceptions/HDF5Exception.java - exceptions/HDF5AtomException.java + exceptions/HDF5IdException.java exceptions/HDF5AttributeException.java exceptions/HDF5BtreeException.java exceptions/HDF5DataFiltersException.java diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java index 3d0b308..aef0ba1 100644 --- a/java/src/hdf/hdf5lib/H5.java +++ b/java/src/hdf/hdf5lib/H5.java @@ -241,10 +241,14 @@ public class H5 implements java.io.Serializable { */ public final static int LIB_VERSION[] = { 1, 13, 0 }; + /** + * add system property to load library by path + */ public final static String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib"; - // add system property to load library by name from library path, via - // System.loadLibrary() + /** + * add system property to load library by name from library path, via System.loadLibrary() + */ public final static String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName"; private static String s_libraryName; private static boolean isLibraryLoaded = false; @@ -257,6 +261,9 @@ public class H5 implements java.io.Serializable { loadH5Lib(); } + /** + * load native library + */ public static void loadH5Lib() { // Make sure that the library is loaded only once if (isLibraryLoaded) @@ -468,6 +475,35 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5get_libversion(int[] libversion) throws HDF5LibraryException; + /** + * H5set_free_list_limits + * Sets limits on the different kinds of free lists. Setting a value + * of -1 for a limit means no limit of that type. These limits are global + * for the entire library. Each "global" limit only applies to free lists + * of that type, so if an application sets a limit of 1 MB on each of the + * global lists, up to 3 MB of total storage might be allocated (1MB on + * each of regular, array and block type lists). + * + * The settings for block free lists are duplicated to factory free lists. + * Factory free list limits cannot be set independently currently. + * + * @param reg_global_lim + * The limit on all "regular" free list memory used + * @param reg_list_lim + * The limit on memory used in each "regular" free list + * @param arr_global_lim + * The limit on all "array" free list memory used + * @param arr_list_lim + * The limit on memory used in each "array" free list + * @param blk_global_lim + * The limit on all "block" free list memory used + * @param blk_list_lim + * The limit on memory used in each "block" free list + * @return a non-negative value if successful, along with the version information. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + */ public synchronized static native int H5set_free_list_limits(int reg_global_lim, int reg_list_lim, int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim) throws HDF5LibraryException; @@ -476,8 +512,8 @@ public class H5 implements java.io.Serializable { * * @param file_export_name * The file name to export data into. - * @param file_name - * The name of the HDF5 file containing the dataset. + * @param file_id + * The identifier of the HDF5 file containing the dataset. * @param object_path * The full path of the dataset to be exported. * @param binary_order @@ -489,10 +525,31 @@ public class H5 implements java.io.Serializable { * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native void H5export_dataset(String file_export_name, String file_name, + public synchronized static native void H5export_dataset(String file_export_name, long file_id, String object_path, int binary_order) throws HDF5LibraryException; /** + * H5export_attribute is a utility function to save data in a file. + * + * @param file_export_name + * The file name to export data into. + * @param dataset_id + * The identifier of the dataset containing the attribute. + * @param attribute_name + * The attribute to be exported. + * @param binary_order + * 99 - export data as text. + * 1 - export data as binary Native Order. + * 2 - export data as binary Little Endian. + * 3 - export data as binary Big Endian. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5export_attribute(String file_export_name, long dataset_id, + String attribute_name, int binary_order) throws HDF5LibraryException; + + /** * H5is_library_threadsafe Checks to see if the library was built with thread-safety enabled. * * @return true if hdf5 library implements threadsafe @@ -1016,7 +1073,7 @@ public class H5 implements java.io.Serializable { /** * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with - * mem_type_id. The entire attribute is read into buf from the file. + * mem_type_id. The entire attribute is read into buffer from the file. * * @param attr_id * IN: Identifier of an attribute to read. @@ -1037,11 +1094,47 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Aread(long attr_id, long mem_type_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param obj + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { return H5Aread(attr_id, mem_type_id, obj, true); @@ -1141,63 +1234,343 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of double from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of double to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of double from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of double to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_double(long attr_id, long mem_type_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_double(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of float from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of float to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of float from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of float to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_float(long attr_id, long mem_type_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_float(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of int from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of int to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of int from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of int to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_int(long attr_id, long mem_type_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_int(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of long from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of long to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of long from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of long to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_long(long attr_id, long mem_type_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_long(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of String from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of String to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_reg_ref(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of short from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of short to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of shortfrom the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of short to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_short(long attr_id, long mem_type_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_short(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of variable-lenght from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of variable-lenght to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5AreadVL(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of String from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of String to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_string(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of variable-lenght strings from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of variable-lenght strings to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_VLStrings(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of string from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5AreadComplex(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; @@ -1270,12 +1643,48 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Awrite(long attr_id, long mem_type_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buf to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buf to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param obj + * IN: Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -1353,60 +1762,286 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of double to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of double with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of double to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of double with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_double(long attr_id, long mem_type_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_double(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of float to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of float with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of float to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of float with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_float(long attr_id, long mem_type_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_float(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of int to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of int with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of int to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of int with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_int(long attr_id, long mem_type_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_int(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of long to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of long with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of long to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of long with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_long(long attr_id, long mem_type_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_long(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of short to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of short with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of short to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of short with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_short(long attr_id, long mem_type_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_short(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of string to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of string with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_string(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of variable-lenght to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of variable-lenght with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5AwriteVL(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; /** * H5Awrite_VLStrings writes a variable length String dataset, specified by its identifier attr_id, from - * the application memory buffer buf into the file. + * the application memory buffer buffer of variable-lenght strings into the file. * * ---- contributed by Rosetta Biosoftware * @@ -1415,7 +2050,7 @@ public class H5 implements java.io.Serializable { * @param mem_type_id * Identifier of the memory datatype. * @param buf - * Buffer with data to be written to the file. + * Buffer of variable-lenght strings with data to be written to the file. * * @return a non-negative value if successful * @@ -1922,12 +2557,60 @@ public class H5 implements java.io.Serializable { long file_space_id, long xfer_plist_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer buf. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer buf. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param obj + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -2043,65 +2726,411 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of type double. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of type double to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of type double. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of float. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of float. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of int. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of int. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of long. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of long. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of string. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_reg_ref(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of short. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of short. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of variable-lenght. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-lenght to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5DreadVL(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of string. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_string(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of variable-lenght strings. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-lenght strings to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_VLStrings(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; @@ -2170,7 +3199,7 @@ public class H5 implements java.io.Serializable { /** * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer - * buf into the file. + * into the file. * * @param dataset_id * Identifier of the dataset read from. @@ -2198,12 +3227,60 @@ public class H5 implements java.io.Serializable { long file_space_id, long xfer_plist_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param obj + * Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -2299,59 +3376,357 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-length with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5DwriteVL(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; @@ -2628,7 +4003,7 @@ public class H5 implements java.io.Serializable { /** - * H5Epush2 pushes a new error record onto the error stack specified by estack_id. + * H5Epush pushes a new error record onto the error stack specified by estack_id. * * @param stack_id * IN: Error stack identifier. @@ -2657,6 +4032,31 @@ public class H5 implements java.io.Serializable { { H5Epush2(stack_id, file, func, line, cls_id, maj_id, min_id, msg); } + /** + * H5Epush2 pushes a new error record onto the error stack specified by estack_id. + * + * @param stack_id + * IN: Error stack identifier. + * @param file + * IN: Name of the file in which the error was detected. + * @param func + * IN: Name of the function in which the error was detected. + * @param line + * IN: Line number within the file at which the error was detected. + * @param cls_id + * IN: Error class identifier. + * @param maj_id + * IN: Major error identifier. + * @param min_id + * IN: Minor error identifier. + * @param msg + * IN: Error description string. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - file, func, or msg is null. + **/ public synchronized static native void H5Epush2(long stack_id, String file, String func, int line, long cls_id, long maj_id, long min_id, String msg) throws HDF5LibraryException, NullPointerException; @@ -2714,6 +4114,24 @@ public class H5 implements java.io.Serializable { { H5Ewalk2(stack_id, direction, func, client_data); } + /** + * H5Ewalk2 walks the error stack specified by estack_id for the current thread and calls the + * function specified in func for each error along the way. + * + * @param stack_id + * IN: Error stack identifier. + * @param direction + * IN: Direction in which the error stack is to be walked. + * @param func + * IN: Function to be called for each error encountered. + * @param client_data + * IN: Data to be passed with func. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - func is null. + **/ public synchronized static native void H5Ewalk2(long stack_id, long direction, H5E_walk_cb func, H5E_walk_t client_data) throws HDF5LibraryException, NullPointerException; @@ -2950,6 +4368,19 @@ public class H5 implements java.io.Serializable { private synchronized static native long _H5Fget_create_plist(long file_id) throws HDF5LibraryException; + /** + * H5Fget_filesize retrieves the file size of the HDF5 file. This function + * is called after an existing file is opened in order + * to learn the true size of the underlying file. + * + * @param file_id + * IN: File identifier for a currently-open HDF5 file + * + * @return the file size of the HDF5 file + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Fget_filesize(long file_id) throws HDF5LibraryException; /** @@ -3598,37 +5029,118 @@ public class H5 implements java.io.Serializable { return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, tokens, HDF5Constants.H5_INDEX_NAME); } - public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype, + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException { - return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, null, tokens, indx_type, -1); + return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, null, tokens, indx_type, -1); } - public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype, + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param fno + * OUT: File number + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException { - return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, indx_type, -1); + return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, indx_type, -1); } - public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype, + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param fno + * OUT: File number + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * @param indx_order + * IN: Index order for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type, int indx_order) throws HDF5LibraryException, NullPointerException { - if (oname == null) { + if (objNames == null) { throw new NullPointerException("H5Gget_obj_info_full(): name array is null"); } - if (otype == null) { + if (objTypes == null) { throw new NullPointerException("H5Gget_obj_info_full(): object type array is null"); } - if (oname.length == 0) { + if (objNames.length == 0) { throw new HDF5LibraryException("H5Gget_obj_info_full(): array size is zero"); } - if (oname.length != otype.length) { + if (objNames.length != objTypes.length) { throw new HDF5LibraryException("H5Gget_obj_info_full(): name and type array sizes are different"); } if (ltype == null) - ltype = new int[otype.length]; + ltype = new int[objTypes.length]; if (fno == null) fno = new long[tokens.length]; @@ -3639,15 +5151,15 @@ public class H5 implements java.io.Serializable { if (indx_order < 0) indx_order = HDF5Constants.H5_ITER_INC; - log.trace("H5Gget_obj_info_full: oname_len={}", oname.length); - int status = H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, oname.length, indx_type, + log.trace("H5Gget_obj_info_full: objNames_len={}", objNames.length); + int status = H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, objNames.length, indx_type, indx_order); - for (int indx = 0; indx < oname.length; indx++) - log.trace("H5Gget_obj_info_full: oname={}", oname[indx]); + for (int indx = 0; indx < objNames.length; indx++) + log.trace("H5Gget_obj_info_full: objNames={}", objNames[indx]); return status; } - private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype, + private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, long[] fno, H5O_token_t[] tokens, int n, int indx_type, int indx_order) throws HDF5LibraryException, NullPointerException; @@ -3663,9 +5175,9 @@ public class H5 implements java.io.Serializable { * @param idx * IN: the index of the object to iterate. * @param oname - * the name of the object [OUT] + * OUT: the name of the object * @param type - * the type of the object [OUT] + * OUT: the type of the object * * @return non-negative if successful, -1 if not. * @@ -3866,13 +5378,40 @@ public class H5 implements java.io.Serializable { // // // //////////////////////////////////////////////////////////// + /** + * H5Iget_file_id obtains the file ID specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the file ID. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Iget_file_id(long obj_id) throws HDF5LibraryException; + /** + * H5Iget_name_long retrieves the name of an object specified by the identifier, obj_id. + * @deprecated + * + * @param obj_id + * IN: Identifier of the object. + * @param name + * OUT: Attribute name buffer. + * @param size + * IN: Maximum length of the name to retrieve. + * + * @return the length of the name retrieved. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ @Deprecated public synchronized static native long H5Iget_name_long(long obj_id, String[] name, long size) throws HDF5LibraryException, NullPointerException; /** - * H5Iget_name_str retrieves the name of an object specified by the identifier, obj_id. + * H5Iget_name retrieves the name of an object specified by the identifier, obj_id. * * @param obj_id * IN: Identifier of the object. @@ -3885,10 +5424,44 @@ public class H5 implements java.io.Serializable { public synchronized static native String H5Iget_name(long obj_id) throws HDF5LibraryException; + /** + * H5Iget_ref obtains the number of references outstanding specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Iget_ref(long obj_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Idec_ref decrements the reference count specified by the identifier, obj_id. + * If the reference count for an ID reaches zero, the object will be closed. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Idec_ref(long obj_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Iinc_ref increments the reference count specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Iinc_ref(long obj_id) throws HDF5LibraryException, NullPointerException; /** @@ -5179,7 +6752,7 @@ public class H5 implements java.io.Serializable { return id; } - public synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name, + private synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name, int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -5210,8 +6783,30 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native void H5Orefresh(long object_id) throws HDF5LibraryException; + /** + * H5Odisable_mdc_flushes corks an object, keeping dirty entries associated with the object in the metadata cache. + * + * @param object_id + * IN: Identifier of the object to be corked. + **/ public synchronized static native void H5Odisable_mdc_flushes(long object_id); + /** + * H5Oenable_mdc_flushes uncorks an object, keeping dirty entries associated with the object in the metadata cache. + * + * @param object_id + * IN: Identifier of the object to be uncorked. + **/ public synchronized static native void H5Oenable_mdc_flushes(long object_id); + /** + * H5Oare_mdc_flushes_disabled retrieve the object's "cork" status. + * + * @param object_id + * IN: Identifier of the object to be flushed. + * + * @return the cork status + * TRUE if mdc flushes for the object is disabled + * FALSE if mdc flushes for the object is not disabled + **/ public synchronized static native boolean H5Oare_mdc_flushes_disabled(long object_id); // /////// unimplemented //////// @@ -5364,6 +6959,7 @@ public class H5 implements java.io.Serializable { * IN: First property object to be compared * @param plid2 * IN: Second property object to be compared + * * @return positive value if equal; zero if unequal, a negative value if failed * * @exception HDF5LibraryException @@ -5371,6 +6967,19 @@ public class H5 implements java.io.Serializable { */ public synchronized static native int H5Pequal(long plid1, long plid2) throws HDF5LibraryException; + /** + * H5Pequal determines if two property lists or classes are equal + * + * @param plid1 + * IN: First property object to be compared + * @param plid2 + * IN: Second property object to be compared + * + * @return TRUE if equal, FALSE if unequal + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + */ public static boolean H5P_equal(long plid1, long plid2) throws HDF5LibraryException { if (H5Pequal(plid1, plid2) == 1) return true; @@ -5456,7 +7065,7 @@ public class H5 implements java.io.Serializable { return _H5Pclose_class(plid); } - public synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException; + private synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException; /** * H5Pclose terminates access to a property list. @@ -5524,6 +7133,19 @@ public class H5 implements java.io.Serializable { // Define property list iteration function type // typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data); + /** + * H5Pcreate_class_nocb creates an new property class with no callback functions. + * + * @param parent_class + * IN: Identifier of the parent property class. + * @param name + * IN: Name of the property class. + * + * @return a property list identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public static long H5Pcreate_class_nocb(long parent_class, String name) throws HDF5LibraryException { long id = _H5Pcreate_class_nocb(parent_class, name); if (id > 0) { @@ -5550,17 +7172,69 @@ public class H5 implements java.io.Serializable { // private synchronized static native long _H5Pcreate_class(long parent_class, String name, H5P_cls_create_func_cb create_op, H5P_cls_create_func_t create_data, // H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb close_op, H5P_cls_close_func_t close_data) throws HDF5LibraryException; + /** + * H5Pregister2_nocb registers a property list with no callback functions. + * + * @param plist_class + * IN: Identifier of the property list. + * @param name + * IN: Name of the property. + * @param size + * IN: Size the property value. + * @param def_value + * IN: Defaul value of the property + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pregister2_nocb(long plist_class, String name, long size, byte[] def_value) throws HDF5LibraryException; // public synchronized static native void H5Pregister2(long plist_class, String name, long size, byte[] def_value, H5P_prp_create_func_cb prp_create, H5P_prp_set_func_cb prp_set, // H5P_prp_get_func_cb prp_get, H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException; + /** + * H5Pinsert2_nocb inserts a property list with no callback functions. + * + * @param plist + * IN: Identifier of the property list. + * @param name + * IN: Name of the property. + * @param size + * IN: Size the property value. + * @param value + * IN: Defaul value of the property + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pinsert2_nocb(long plist, String name, long size, byte[] value) throws HDF5LibraryException; // public synchronized static native void H5Pinsert2(long plist, String name, long size, byte[] value, H5P_prp_set_func_cb prp_set, H5P_prp_get_func_cb prp_get, // H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException; + /** + * H5Piterate iterates over the properties in a property list or class + * + * @param plist + * IN: ID of property object to iterate over + * @param idx + * IN/OUT: index of the property to begin with + * @param op + * IN: function to be called with each property iterated over. + * @param op_data + * IN: iteration data from user + * + * @return + * the return value of the last call to op if it was non-zero, + * zero if all properties have been processed + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - size is null. + * + **/ public synchronized static native int H5Piterate(long plist, int[] idx, H5P_iterate_cb op, H5P_iterate_t op_data) throws HDF5LibraryException; // /////// Object creation property list (OCPL) routines /////// @@ -5573,7 +7247,7 @@ public class H5 implements java.io.Serializable { * @param attributes * The maximun and minimum no. of attributes to be stored. * - * <pre> + * <pre> * attributes[0] = The maximum number of attributes to be stored in compact storage * attributes[1] = The minimum number of attributes to be stored in dense storage * </pre> @@ -5673,6 +7347,51 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_obj_track_times(long ocpl_id, boolean track_times) throws HDF5LibraryException; + /** + * H5Pmodify_filter modifies the specified FILTER in the transient or permanent output filter pipeline + * depending on whether PLIST is a dataset creation or dataset + * transfer property list. The FLAGS argument specifies certain + * general properties of the filter and is documented below. + * The CD_VALUES is an array of CD_NELMTS integers which are + * auxiliary data for the filter. The integer vlues will be + * stored in the dataset object header as part of the filter + * information. + *<p> + * The FLAGS argument is a bit vector of the following fields: + *<p> + * H5Z_FLAG_OPTIONAL(0x0001) + * If this bit is set then the filter is optional. If the + * filter fails during an H5Dwrite() operation then the filter + * is just excluded from the pipeline for the chunk for which it + * failed; the filter will not participate in the pipeline + * during an H5Dread() of the chunk. If this bit is clear and + * the filter fails then the entire I/O operation fails. + * If this bit is set but encoding is disabled for a filter, + * attempting to write will generate an error. + *<p> + * Note: This function currently supports only the permanent filter + * pipeline. That is, PLIST_ID must be a dataset creation + * property list. + * + * @param plist + * IN: Property list identifier. + * @param filter + * IN: Filter to be modified to the pipeline. + * @param flags + * IN: Bit vector specifying certain general properties of the filter. + * @param cd_nelmts + * IN: Number of elements in cd_values + * @param cd_values + * IN: Auxiliary data for the filter. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name or an array is null. + * + **/ public synchronized static native int H5Pmodify_filter(long plist, long filter, int flags, long cd_nelmts, int[] cd_values) throws HDF5LibraryException, NullPointerException; @@ -5844,9 +7563,37 @@ public class H5 implements java.io.Serializable { throws HDF5LibraryException, NullPointerException; + /** + * H5Pall_filters_avail query to verify that all the filters set + * in the dataset creation property list are available currently. + * + * @param dcpl_id + * IN: Property list identifier. + * + * @return + * TRUE if all filters available + * FALSE if one or more filters not currently available. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native boolean H5Pall_filters_avail(long dcpl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Premove_filter deletes a filter from the dataset creation property list; + * deletes all filters if filter is H5Z_FILTER_NONE + * + * @param obj_id + * IN: Property list identifier. + * @param filter + * IN: Filter identifier. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Premove_filter(long obj_id, long filter) throws HDF5LibraryException; /** @@ -5864,6 +7611,18 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5Pset_deflate(long plist, int level) throws HDF5LibraryException; + /** + * H5Pset_fletcher32 sets Fletcher32 checksum of EDC for a dataset creation + * property list or group creation property list. + * + * @param plist + * IN: Property list identifier. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Pset_fletcher32(long plist) throws HDF5LibraryException, NullPointerException; @@ -6334,11 +8093,35 @@ public class H5 implements java.io.Serializable { */ public synchronized static native long H5Pget_driver(long plid) throws HDF5LibraryException; - public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pget_family_offset gets offset for family driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the offset. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException; - public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_family_offset sets the offset for family driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param offset + * IN: the offset value + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException; /** * Retrieves the maximum possible number of elements in the meta data cache and the maximum possible number of bytes @@ -6389,9 +8172,8 @@ public class H5 implements java.io.Serializable { double rdcc_w0) throws HDF5LibraryException; /** - * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list and - * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is - * used when the file is opened. + * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list. + * This configuration is used when the file is opened. * * @param plist_id * IN: Identifier of the file access property list. @@ -6403,6 +8185,19 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native H5AC_cache_config_t H5Pget_mdc_config(long plist_id) throws HDF5LibraryException; + /** + * H5Pset_mdc_config sets the initial metadata cache configuration contained in a file access property list and + * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is + * used when the file is opened. + * + * @param plist_id + * IN: Identifier of the file access property list. + * @param config_ptr + * IN: H5AC_cache_config_t, the initial metadata cache configuration. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pset_mdc_config(long plist_id, H5AC_cache_config_t config_ptr) throws HDF5LibraryException; @@ -6437,10 +8232,35 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_gc_references(long fapl_id, boolean gc_ref) throws HDF5LibraryException; - public synchronized static native int H5Pget_fclose_degree(long plist_id) throws HDF5LibraryException, + /** + * H5Pget_fclose_degree returns the degree for the file close behavior for a file access + * property list. + * + * @param fapl_id + * IN File access property list + * + * @return the degree for the file close behavior + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pget_fclose_degree(long fapl_id) throws HDF5LibraryException, NullPointerException; - public synchronized static native int H5Pset_fclose_degree(long plist, int degree) throws HDF5LibraryException, + /** + * H5Pset_fclose_degree sets the degree for the file close behavior. + * + * @param fapl_id + * IN File access property list + * @param degree + * IN the degree for the file close behavior + * + * @return non-negative if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pset_fclose_degree(long fapl_id, int degree) throws HDF5LibraryException, NullPointerException; /** @@ -6471,8 +8291,40 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native void H5Pset_meta_block_size(long fapl_id, long size) throws HDF5LibraryException; + /** + * H5Pget_sieve_buf_size retrieves the current settings for the data sieve buffer size + * property from a file access property list. + * + * @param fapl_id + * IN: Identifier for property list to query. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Pget_sieve_buf_size(long fapl_id) throws HDF5LibraryException; + /** + * H5Pset_sieve_buf_size Sets the maximum size of the data seive buffer used for file + * drivers which are capable of using data sieving. The data sieve + * buffer is used when performing I/O on datasets in the file. Using a + * buffer which is large anough to hold several pieces of the dataset + * being read in for hyperslab selections boosts performance by quite a + * bit. + * <p> + * The default value is set to 64KB, indicating that file I/O for raw data + * reads and writes will occur in at least 64KB blocks. Setting the value to 0 + * with this function will turn off the data sieving + * + * @param fapl_id + * IN: Identifier of property list to modify. + * @param size + * IN: maximum size of the data seive buffer. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pset_sieve_buf_size(long fapl_id, long size) throws HDF5LibraryException; /** @@ -6687,6 +8539,55 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_evict_on_close(long fapl_id, boolean evict_on_close) throws HDF5LibraryException; + /** + * H5Pget_use_file_locking retrieves whether we are using file locking. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return indication if file locking is used. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native boolean H5Pget_use_file_locking(long fapl_id) + throws HDF5LibraryException; + + /** + * H5Pget_use_file_locking retrieves whether we ignore file locks when they are disabled. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return indication if file locking is ignored. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native boolean H5Pget_ignore_disabled_file_locking(long fapl_id) + throws HDF5LibraryException; + + /** + * H5Pset_file_locking sets parameters related to file locking. + * + * @param fapl_id + * IN: File access property list identifier + * + * @param use_file_locking + * IN: Whether the library will use file locking when opening files (mainly for SWMR semantics). + * + * @param ignore_when_disabled + * IN: Whether file locking will be ignored when disabled on a file system (useful for Lustre). + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native void H5Pset_file_locking(long fapl_id, boolean use_file_locking, boolean ignore_when_disabled) + throws HDF5LibraryException; + // ///// unimplemented ///// // herr_t H5Pset_vol(hid_t plist_id, hid_t new_vol_id, const void *new_vol_info); // herr_t H5Pget_vol_id(hid_t plist_id, hid_t *vol_id); @@ -6767,6 +8668,25 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_chunk(long plist, int ndims, byte[] dim) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + /** + * H5Pset_chunk sets the size of the chunks used to store a chunked layout dataset. + * + * @param plist + * IN: Identifier for property list to query. + * @param ndims + * IN: The number of dimensions of each chunk. + * @param dim + * IN: An array containing the size of each chunk. + * + * @return a non-negative value if successful + * + * @exception HDF5Exception + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - dims array is null. + * @exception IllegalArgumentException + * - dims <=0 + **/ public synchronized static int H5Pset_chunk(long plist, int ndims, long[] dim) throws HDF5Exception, NullPointerException, IllegalArgumentException { if (dim == null) { @@ -7002,9 +8922,37 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5Pget_external_count(long plist) throws HDF5LibraryException; + /** + * H5Pset_szip Sets up the use of the szip filter. + * + * @param plist + * IN: Dataset creation property list identifier. + * @param options_mask + * IN: Bit vector specifying certain general properties of the filter. + * @param pixels_per_block + * IN: Number of pixels in blocks + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_szip(long plist, int options_mask, int pixels_per_block) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_shuffle Sets up the use of the shuffle filter. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_shuffle(long plist_id) throws HDF5LibraryException, NullPointerException; @@ -7132,20 +9080,91 @@ public class H5 implements java.io.Serializable { return retVal; } + /** + * H5Pset_fill_value checks if the fill value is defined for a dataset creation property list. + * + * @param plist_id + * IN: Property list identifier. + * @param status + * IN: The fill value setting: + * H5D_FILL_VALUE_UNDEFINED + * H5D_FILL_VALUE_DEFAULT + * H5D_FILL_VALUE_USER_DEFINED + * H5D_FILL_VALUE_ERROR + * + * @return a non-negative value if successful + * + * @exception HDF5Exception + * - Error converting data array + **/ public synchronized static native int H5Pfill_value_defined(long plist_id, int[] status) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_alloc_time Gets space allocation time for dataset during creation. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param alloc_time + * OUT: allocation time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_alloc_time(long plist_id, int[] alloc_time) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_alloc_time Sets space allocation time for dataset during creation. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param alloc_time + * IN: allocation time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_alloc_time(long plist_id, int alloc_time) throws HDF5LibraryException, NullPointerException; - public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_fill_time Gets fill value writing time. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param fill_time + * OUT: fill time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException; - public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_fill_time Sets the fill value writing time. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param fill_time + * IN: fill time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException; /** * H5Pset_chunk_opts Sets the edge chunk option in a dataset creation property list. @@ -7445,6 +9464,20 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pget_buffer(long plist, byte[] tconv, byte[] bkg) throws HDF5LibraryException, IllegalArgumentException; + /** + * H5Pget_buffer_size gets type conversion and background buffer size, in bytes, if successful; + * otherwise 0 on failure. + * + * @param plist + * Identifier for the dataset transfer property list. + * + * @return buffer size, in bytes, if successful; otherwise 0 on failure + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception IllegalArgumentException + * - plist is invalid. + **/ public synchronized static native long H5Pget_buffer_size(long plist) throws HDF5LibraryException, IllegalArgumentException; @@ -7475,11 +9508,33 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_buffer_size(long plist, long size) throws HDF5LibraryException, IllegalArgumentException; - public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pget_edc_check gets the error-detecting algorithm in use. + * + * @param plist + * Identifier for the dataset transfer property list. + * + * @return the error-detecting algorithm + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException; - public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_edc_check sets the error-detecting algorithm. + * + * @param plist + * Identifier for the dataset transfer property list. + * @param check + * the error-detecting algorithm to use. + * + * @return non-negative if succeed + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException; /** * H5Pget_btree_ratio Get the B-tree split ratios for a dataset transfer property list. @@ -7524,9 +9579,46 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_btree_ratios(long plist_id, double left, double middle, double right) throws HDF5LibraryException; + /** + * H5Pget_hyper_vector_size reads values previously set with H5Pset_hyper_vector_size. + * + * @param dxpl_id + * IN: Dataset transfer property list identifier. + * @param vector_size + * OUT: hyper vector size. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_hyper_vector_size(long dxpl_id, long[] vector_size) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_hyper_vector_size sets the number of + * "I/O vectors" (offset and length pairs) which are to be + * accumulated in memory before being issued to the lower levels + * of the library for reading or writing the actual data. + * Increasing the number should give better performance, but use + * more memory during hyperslab I/O. The vector size must be + * greater than 1. + *,p. + * The default is to use 1024 vectors for I/O during hyperslab + * reading/writing. + * + * @param dxpl_id + * IN: Dataset transfer property list identifier. + * @param vector_size + * IN: hyper vestor size. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_hyper_vector_size(long dxpl_id, long vector_size) throws HDF5LibraryException, NullPointerException; @@ -7724,8 +9816,32 @@ public class H5 implements java.io.Serializable { // /////// String creation property list (STRCPL) routines /////// + /** + * H5Pget_char_encoding gets the character encoding of the string. + * + * @param plist_id + * IN: the property list identifier + * + * @return Returns the character encoding of the string. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_char_encoding(long plist_id) throws HDF5LibraryException; + /** + * H5Pset_char_encoding sets the character encoding of the string. + * + * @param plist_id + * IN: the property list identifier + * @param encoding + * IN: the character encoding of the string + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pset_char_encoding(long plist_id, int encoding) throws HDF5LibraryException; @@ -7915,20 +10031,51 @@ public class H5 implements java.io.Serializable { // /////// file drivers property list routines /////// + /** + * H5Pget_fapl_core retrieve H5FD_CORE I/O settings. + * + * @param fapl_id + * IN: File access property list identifier + * @param increment + * OUT: how much to grow the memory each time + * @param backing_store + * OUT: write to file name on flush setting + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pget_fapl_core(long fapl_id, long[] increment, boolean[] backing_store) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_core modifies the file access property list to use the H5FD_CORE driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param increment + * IN: how much to grow the memory each time + * @param backing_store + * IN: write to file name on flush setting + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_core(long fapl_id, long increment, boolean backing_store) throws HDF5LibraryException, NullPointerException; /** - * H5Pget_fapl_direct Retrieve direct I/O settings. + * H5Pget_fapl_direct queries properties set by the H5Pset_fapl_direct. * * @param fapl_id * IN: File access property list identifier * @param info - * OUT: Returned property list information info[0] = alignment Required memory alignment boundary info[1] - * = block_size File system block size info[2] = cbuf_size Copy buffer size + * OUT: Returned property list information + * info[0] = increment -how much to grow the memory each time + * info[1] = backing_store - write to file name on flush setting * * @return a non-negative value if successful; otherwise returns a negative value. * @@ -7959,14 +10106,72 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_fapl_direct(long fapl_id, long alignment, long block_size, long cbuf_size) throws HDF5LibraryException; + /** + * H5Pget_fapl_family Returns information about the family file access property list. + * + * @param fapl_id + * IN: File access property list identifier + * @param memb_size + * OUT: the size in bytes of each file member (used only when creating a new file) + * @param memb_fapl_id + * OUT: the file access property list to be used for each family member + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_fapl_family(long fapl_id, long[] memb_size, long[] memb_fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_family Sets up use of the direct I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param memb_size + * IN: the size in bytes of each file member (used only when creating a new file) + * @param memb_fapl_id + * IN: the file access property list to be used for each family member + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_family(long fapl_id, long memb_size, long memb_fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_hdfs Modify the file access property list to use the H5FD_HDFS driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param fapl_conf + * IN: the properties of the hdfs driver + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_hdfs(long fapl_id, H5FD_hdfs_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException; + /** + * H5Pget_fapl_hdfs gets the properties hdfs I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the properties of the hdfs driver. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native H5FD_hdfs_fapl_t H5Pget_fapl_hdfs(long fapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -8044,17 +10249,99 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_fapl_log(long fapl_id, String logfile, long flags, long buf_size) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_sec2 Sets up use of the sec2 I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_sec2(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_split Sets up use of the split I/O driver. Makes the multi driver act like the + * old split driver which stored meta data in one file and raw + * data in another file + * + * @param fapl_id + * IN: File access property list identifier + * @param meta_ext + * IN: meta filename extension + * @param meta_plist_id + * IN: File access property list identifier for metadata + * @param raw_ext + * IN: raw data filename extension + * @param raw_plist_id + * IN: File access property list identifier raw data + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pset_fapl_split(long fapl_id, String meta_ext, long meta_plist_id, String raw_ext, long raw_plist_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_stdio Sets up use of the stdio I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_stdio(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_windows Sets up use of the windows I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_windows(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_ros3 Modify the file access property list to use the H5FD_ROS3 driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param fapl_conf + * IN: the properties of the ros3 driver + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_ros3(long fapl_id, H5FD_ros3_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException; + /** + * H5Pget_fapl_ros3 gets the properties of the ros3 I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the properties of the ros3 driver. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native H5FD_ros3_fapl_t H5Pget_fapl_ros3(long fapl_id) throws HDF5LibraryException, NullPointerException; // /////// unimplemented //////// @@ -8762,50 +11049,7 @@ public class H5 implements java.io.Serializable { // // // //////////////////////////////////////////////////////////// - /** - * H5Sclose releases a dataspace. - * - * @param space_id - * Identifier of dataspace to release. - * - * @return a non-negative value if successful - * - * @exception HDF5LibraryException - * - Error from the HDF-5 Library. - **/ - public static int H5Sclose(long space_id) throws HDF5LibraryException { - if (space_id < 0) - return 0; // throw new HDF5LibraryException("Negative ID");; - - log.trace("OPEN_IDS: H5Sclose remove {}", space_id); - OPEN_IDS.remove(space_id); - log.trace("OPEN_IDS: {}", OPEN_IDS.size()); - return _H5Sclose(space_id); - } - - private synchronized static native int _H5Sclose(long space_id) throws HDF5LibraryException; - - /** - * H5Scopy creates a new dataspace which is an exact copy of the dataspace identified by space_id. - * - * @param space_id - * Identifier of dataspace to copy. - * @return a dataspace identifier if successful - * - * @exception HDF5LibraryException - * - Error from the HDF-5 Library. - **/ - public static long H5Scopy(long space_id) throws HDF5LibraryException { - long id = _H5Scopy(space_id); - if (id > 0) { - log.trace("OPEN_IDS: H5Scopy add {}", id); - OPEN_IDS.add(id); - log.trace("OPEN_IDS: {}", OPEN_IDS.size()); - } - return id; - } - - private synchronized static native long _H5Scopy(long space_id) throws HDF5LibraryException; + /**************** Operations on dataspaces ********************/ /** * H5Screate creates a new dataspace of a particular type. @@ -8862,19 +11106,96 @@ public class H5 implements java.io.Serializable { throws HDF5Exception, NullPointerException; /** - * H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it. + * H5Sset_extent_simple sets or resets the size of an existing dataspace. * - * @param buf - * IN: Buffer for the data space object to be decoded. + * @param space_id + * Dataspace identifier. + * @param rank + * Rank, or dimensionality, of the dataspace. + * @param current_size + * Array containing current size of dataspace. + * @param maximum_size + * Array containing maximum size of dataspace. * - * @return a new object handle + * @return a dataspace identifier if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. - * @exception NullPointerException - * - buf is null. **/ - public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException; + public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size, + long[] maximum_size) throws HDF5LibraryException, NullPointerException; + + /** + * H5Sset_extent_simple sets or resets the size of an existing dataspace. + * + * @param space_id + * Dataspace identifier. + * @param rank + * Rank, or dimensionality, of the dataspace. + * @param current_size + * Array containing current size of dataspace. + * @param maximum_size + * Array containing maximum size of dataspace. + * + * @return a dataspace identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size, + byte[] maximum_size) throws HDF5LibraryException, NullPointerException { + ByteBuffer csbb = ByteBuffer.wrap(current_size); + long[] lacs = (csbb.asLongBuffer()).array(); + ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size); + long[] lamaxs = (maxsbb.asLongBuffer()).array(); + + return H5Sset_extent_simple(space_id, rank, lacs, lamaxs); + } + + /** + * H5Scopy creates a new dataspace which is an exact copy of the dataspace identified by space_id. + * + * @param space_id + * Identifier of dataspace to copy. + * @return a dataspace identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public static long H5Scopy(long space_id) throws HDF5LibraryException { + long id = _H5Scopy(space_id); + if (id > 0) { + log.trace("OPEN_IDS: H5Scopy add {}", id); + OPEN_IDS.add(id); + log.trace("OPEN_IDS: {}", OPEN_IDS.size()); + } + return id; + } + + private synchronized static native long _H5Scopy(long space_id) throws HDF5LibraryException; + + /** + * H5Sclose releases a dataspace. + * + * @param space_id + * Identifier of dataspace to release. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public static int H5Sclose(long space_id) throws HDF5LibraryException { + if (space_id < 0) + return 0; // throw new HDF5LibraryException("Negative ID");; + + log.trace("OPEN_IDS: H5Sclose remove {}", space_id); + OPEN_IDS.remove(space_id); + log.trace("OPEN_IDS: {}", OPEN_IDS.size()); + return _H5Sclose(space_id); + } + + private synchronized static native int _H5Sclose(long space_id) throws HDF5LibraryException; /** * H5Sencode converts a data space description into binary form in a buffer. @@ -8890,154 +11211,139 @@ public class H5 implements java.io.Serializable { public synchronized static native byte[] H5Sencode(long obj_id) throws HDF5LibraryException, NullPointerException; /** - * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the - * dataspace. + * H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it. * - * @param dest_space_id - * IN: The identifier for the dataspace from which the extent is copied. - * @param source_space_id - * IN: The identifier for the dataspace to which the extent is copied. + * @param buf + * IN: Buffer for the data space object to be decoded. * - * @return a non-negative value if successful + * @return a new object handle * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - buf is null. **/ - public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id) - throws HDF5LibraryException; + public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException; /** - * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal. + * H5Sget_simple_extent_npoints determines the number of elements in a dataspace. * - * @param first_space_id - * IN: The identifier for the first dataspace. - * @param second_space_id - * IN: The identifier for the seconddataspace. + * @param space_id + * ID of the dataspace object to query + * @return the number of elements in the dataspace if successful * - * @return true if successful, else false + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException; + + /** + * H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace. + * + * @param space_id + * IN: Identifier of the dataspace + * + * @return the number of dimensions in the dataspace if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id) - throws HDF5LibraryException; + public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException; /** - * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places - * them into user-supplied buffers. - * <P> - * The start and end buffers must be large enough to hold the dataspace rank number of coordinates. + * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims + * and maxdims parameters. * - * @param spaceid - * Identifier of dataspace to release. - * @param start - * coordinates of lowest corner of bounding box. - * @param end - * coordinates of highest corner of bounding box. + * @param space_id + * IN: Identifier of the dataspace object to query + * @param dims + * OUT: Pointer to array to store the size of each dimension. + * @param maxdims + * OUT: Pointer to array to store the maximum size of each dimension. * - * @return a non-negative value if successful,with start and end initialized. + * @return the number of dimensions in the dataspace if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. * @exception NullPointerException - * - start or end is null. + * - dims or maxdims is null. **/ - public synchronized static native int H5Sget_select_bounds(long spaceid, long[] start, long[] end) + public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims) throws HDF5LibraryException, NullPointerException; /** - * H5Sget_select_elem_npoints returns the number of element points in the current dataspace selection. + * H5Sis_simple determines whether a dataspace is a simple dataspace. * - * @param spaceid - * Identifier of dataspace to release. + * @param space_id + * Identifier of the dataspace to query * - * @return a non-negative value if successful + * @return true if is a simple dataspace * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException; + public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException; /** - * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point - * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per - * point. + * H5Sget_simple_extent_type queries a dataspace to determine the current class of a dataspace. * - * @param spaceid - * Identifier of dataspace to release. - * @param startpoint - * first point to retrieve - * @param numpoints - * number of points to retrieve - * @param buf - * returns points startblock to startblock+num-1, each points is <i>rank</i> longs. + * @param space_id + * Dataspace identifier. * - * @return a non-negative value if successful + * @return a dataspace class name if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. - * @exception NullPointerException - * - buf is null. **/ - public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints, - long[] buf) throws HDF5LibraryException, NullPointerException; + public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException; /** - * H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same - * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows: - * - * <pre> - * <"start" coordinate>, immediately followed by - * <"opposite" corner coordinate>, followed by - * the next "start" and "opposite" coordinates, - * etc. - * until all of the selected blocks have been listed. - * </pre> + * H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE. * - * @param spaceid - * Identifier of dataspace to release. - * @param startblock - * first block to retrieve - * @param numblocks - * number of blocks to retrieve - * @param buf - * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs. + * @param space_id + * The identifier for the dataspace from which the extent is to be removed. * * @return a non-negative value if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. - * @exception NullPointerException - * - buf is null. **/ - public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks, - long[] buf) throws HDF5LibraryException, NullPointerException; + public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException; /** - * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection. + * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the + * dataspace. * - * @param spaceid - * Identifier of dataspace to release. + * @param dest_space_id + * IN: The identifier for the dataspace from which the extent is copied. + * @param source_space_id + * IN: The identifier for the dataspace to which the extent is copied. * * @return a non-negative value if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException; + public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id) + throws HDF5LibraryException; /** - * H5Sget_select_npoints determines the number of elements in the current selection of a dataspace. + * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal. * - * @param space_id - * IN: Identifier of the dataspace object to query + * @param first_space_id + * IN: The identifier for the first dataspace. + * @param second_space_id + * IN: The identifier for the seconddataspace. * - * @return the number of elements in the selection if successful + * @return true if successful, else false * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException; + public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id) + throws HDF5LibraryException; + + /***************** Operations on dataspace selections *****************/ /** * H5Sget_select_type retrieves the type of selection currently defined for the dataspace space_id. @@ -9053,76 +11359,118 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Sget_select_type(long space_id) throws HDF5LibraryException; /** - * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims - * and maxdims parameters. + * H5Sget_select_npoints determines the number of elements in the current selection of a dataspace. * * @param space_id * IN: Identifier of the dataspace object to query - * @param dims - * OUT: Pointer to array to store the size of each dimension. - * @param maxdims - * OUT: Pointer to array to store the maximum size of each dimension. * - * @return the number of dimensions in the dataspace if successful + * @return the number of elements in the selection if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. - * @exception NullPointerException - * - dims or maxdims is null. **/ - public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims) - throws HDF5LibraryException, NullPointerException; + public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException; /** - * H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace. + * H5Sselect_copy copies all the selection information (including offset) from the source + * dataspace to the destination dataspace. + * @param dst_id ID of the destination dataspace + * @param src_id ID of the source dataspace + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5Sselect_copy(long dst_id, long src_id) throws HDF5LibraryException; + + /** + * H5Sselect_valid verifies that the selection for the dataspace. * * @param space_id - * IN: Identifier of the dataspace + * The identifier for the dataspace in which the selection is being reset. * - * @return the number of dimensions in the dataspace if successful + * @return true if the selection is contained within the extent and FALSE if it is not or is an error. * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException; + public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException; /** - * H5Sget_simple_extent_npoints determines the number of elements in a dataspace. + * H5Sselect_adjust moves a selection by subtracting an offset from it. * * @param space_id - * ID of the dataspace object to query - * @return the number of elements in the dataspace if successful + * ID of dataspace to adjust + * @param offset + * Offset to subtract * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - offset is null. **/ - public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException; + public synchronized static native void H5Sselect_adjust(long space_id, long[][] offset) + throws HDF5LibraryException, NullPointerException; /** - * H5Sget_simple_extent_type queries a dataspace to determine the current class of a dataspace. + * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places + * them into user-supplied buffers. + * <P> + * The start and end buffers must be large enough to hold the dataspace rank number of coordinates. * * @param space_id - * Dataspace identifier. + * Identifier of dataspace to release. + * @param start + * coordinates of lowest corner of bounding box. + * @param end + * coordinates of highest corner of bounding box. * - * @return a dataspace class name if successful + * @return a non-negative value if successful,with start and end initialized. * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - start or end is null. **/ - public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException; + public synchronized static native int H5Sget_select_bounds(long space_id, long[] start, long[] end) + throws HDF5LibraryException, NullPointerException; /** - * H5Sis_simple determines whether a dataspace is a simple dataspace. + * H5Sselect_shape_same checks to see if the current selection in the dataspaces are the same + * dimensionality and shape. + * This is primarily used for reading the entire selection in one swoop. + * + * @param space1_id ID of 1st Dataspace pointer to compare + * @param space2_id ID of 2nd Dataspace pointer to compare + * + * @return true if the selection is the same dimensionality and shape; + * false otherwise + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native boolean H5Sselect_shape_same(long space1_id, long space2_id) throws HDF5LibraryException; + + /** + * H5Sselect_intersect_block checks to see if the current selection in the + * dataspace intersects with the block given. * * @param space_id - * Identifier of the dataspace to query + * ID of dataspace pointer to compare + * @param start + * Starting coordinate of block + * @param end + * Opposite ("ending") coordinate of block * - * @return true if is a simple dataspace + * @return a TRUE if the current selection in the dataspace intersects with the block given + * FALSE otherwise * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - offset is null. **/ - public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException; + public synchronized static native boolean H5Sselect_intersect_block(long space_id, long[] start, long[] end) + throws HDF5LibraryException, NullPointerException; /** * H5Soffset_simple sets the offset of a simple dataspace space_id. @@ -9142,6 +11490,21 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Soffset_simple(long space_id, byte[] offset) throws HDF5LibraryException, NullPointerException; + /** + * H5Soffset_simple sets the offset of a simple dataspace space_id. + * + * @param space_id + * IN: The identifier for the dataspace object to reset. + * @param offset + * IN: The offset at which to position the selection. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - offset array is null. + **/ public synchronized static int H5Soffset_simple(long space_id, long[] offset) throws HDF5Exception, NullPointerException { if (offset == null) { @@ -9172,6 +11535,18 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Sselect_all(long space_id) throws HDF5LibraryException; /** + * H5Sselect_none resets the selection region for the dataspace space_id to include no elements. + * + * @param space_id + * IN: The identifier of the dataspace to be reset. + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException; + + /** * H5Sselect_elements selects array elements to be included in the selection for the space_id dataspace. * * @param space_id @@ -9229,6 +11604,43 @@ public class H5 implements java.io.Serializable { } /** + * H5Sget_select_elem_npoints returns the number of element points in the current dataspace selection. + * + * @param spaceid + * Identifier of dataspace to release. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException; + + /** + * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point + * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per + * point. + * + * @param spaceid + * Identifier of dataspace to release. + * @param startpoint + * first point to retrieve + * @param numpoints + * number of points to retrieve + * @param buf + * returns points startblock to startblock+num-1, each points is <i>rank</i> longs. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - buf is null. + **/ + public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints, + long[] buf) throws HDF5LibraryException, NullPointerException; + + /** * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace. * @@ -9268,76 +11680,118 @@ public class H5 implements java.io.Serializable { return H5Sselect_hyperslab(space_id, op, lastart, lastride, lacount, lablock); } - public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride, - long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; - /** - * H5Sselect_none resets the selection region for the dataspace space_id to include no elements. + * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified + * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace. * * @param space_id - * IN: The identifier of the dataspace to be reset. + * IN: Identifier of dataspace selection to modify + * @param op + * IN: Operation to perform on current selection. + * @param start + * IN: Offset of start of hyperslab + * @param stride + * IN: Hyperslab stride. + * @param count + * IN: Number of blocks included in hyperslab. + * @param block + * IN: Size of block in hyperslab. + * * @return a non-negative value if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. **/ - public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException; + public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride, + long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + /** - * H5Sselect_valid verifies that the selection for the dataspace. + * H5Scombine_hyperslab combines a hyperslab selection with the current selection for a dataspace, + * creating a new dataspace to return the generated selection. + * If the current selection is not a hyperslab, it is freed and the hyperslab + * parameters passed in are combined with the H5S_SEL_ALL hyperslab (ie. a + * selection composing the entire current extent). If STRIDE or BLOCK is + * NULL, they are assumed to be set to all '1'. * * @param space_id - * The identifier for the dataspace in which the selection is being reset. + * IN: Dataspace ID of selection to use + * @param op + * IN: Operation to perform on current selection. + * @param start + * IN: Offset of start of hyperslab + * @param stride + * IN: Hyperslab stride. + * @param count + * IN: Number of blocks included in hyperslab. + * @param block + * IN: Size of block in hyperslab. * - * @return true if the selection is contained within the extent and FALSE if it is not or is an error. + * @return a dataspace ID on success / H5I_INVALID_HID on failure + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public synchronized static native long H5Scombine_hyperslab(long space_id, int op, long[] start, long[] stride, + long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Smodify_select refine an existing hyperslab selection with an operation, using a second + * hyperslab. The first selection is modified to contain the result of + * space1 operated on by space2. + * + * @param space1_id + * ID of the destination dataspace + * @param op + * Operation to perform on current selection. + * @param space2_id + * ID of the source dataspace * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException; + public synchronized static native void H5Smodify_select(long space1_id, int op, long space2_id) throws HDF5LibraryException; /** - * H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE. + * H5Scombine_select combines two existing hyperslab selections with an operation, returning + * a new dataspace with the resulting selection. The dataspace extent from + * space1 is copied for the dataspace extent of the newly created dataspace. * - * @param space_id - * The identifier for the dataspace from which the extent is to be removed. + * @param space1_id + * ID of the first dataspace + * @param op + * Operation to perform on current selection. + * @param space2_id + * ID of the second dataspace * - * @return a non-negative value if successful + * @return a dataspace ID on success / H5I_INVALID_HID on failure * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException; + public synchronized static native long H5Scombine_select(long space1_id, int op, long space2_id) throws HDF5LibraryException; /** - * H5Sset_extent_simple sets or resets the size of an existing dataspace. + * H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified + * by space_id. * * @param space_id - * Dataspace identifier. - * @param rank - * Rank, or dimensionality, of the dataspace. - * @param current_size - * Array containing current size of dataspace. - * @param maximum_size - * Array containing maximum size of dataspace. + * IN: Identifier of dataspace selection to query * - * @return a dataspace identifier if successful + * @return a TRUE/FALSE for hyperslab selection if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size, - long[] maximum_size) throws HDF5LibraryException, NullPointerException; - - public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size, - byte[] maximum_size) throws HDF5LibraryException, NullPointerException { - ByteBuffer csbb = ByteBuffer.wrap(current_size); - long[] lacs = (csbb.asLongBuffer()).array(); - ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size); - long[] lamaxs = (maxsbb.asLongBuffer()).array(); - - return H5Sset_extent_simple(space_id, rank, lacs, lamaxs); - } + public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException; /** * H5Sget_regular_hyperslab determines if a hyperslab selection is regular for the dataspace specified @@ -9363,33 +11817,82 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native void H5Sget_regular_hyperslab(long space_id, long[] start, long[] stride, long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + /** + * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection. + * + * @param spaceid + * Identifier of dataspace to release. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException; + /** - * H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified - * by space_id. + * H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same + * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows: * - * @param space_id - * IN: Identifier of dataspace selection to query + * <pre> + * <"start" coordinate>, immediately followed by + * <"opposite" corner coordinate>, followed by + * the next "start" and "opposite" coordinates, + * etc. + * until all of the selected blocks have been listed. + * </pre> * - * @return a TRUE/FALSE for hyperslab selection if successful + * @param spaceid + * Identifier of dataspace to release. + * @param startblock + * first block to retrieve + * @param numblocks + * number of blocks to retrieve + * @param buf + * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs. + * + * @return a non-negative value if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - buf is null. **/ - public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException; + public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks, + long[] buf) throws HDF5LibraryException, NullPointerException; - // /////// unimplemented //////// - // #ifdef NEW_HYPERSLAB_API - // hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op, - // const hsize_t start[], - // const hsize_t _stride[], - // const hsize_t count[], - // const hsize_t _block[]); - // herr_t H5Sselect_select(hid_t space1_id, H5S_seloper_t op, - // hid_t space2_id); - // hid_t H5Scombine_select(hid_t space1_id, H5S_seloper_t op, - // hid_t space2_id); - // #endif /* NEW_HYPERSLAB_API */ - // herr_t H5Sselect_copy(hid_t dst_id, hid_t src_id); + /** + * H5Sselect_project_intersection projects the intersection of the selections of src_space_id and + * src_intersect_space_id within the selection of src_space_id as a + * selection within the selection of dst_space_id. + * + * @param src_space_id + * Selection that is mapped to dst_space_id, and intersected with src_intersect_space_id + * @param dst_space_id + * Selection that is mapped to src_space_id + * @param src_intersect_space_id + * Selection whose intersection with src_space_id is projected to dst_space_id to obtain the result + * + * @return a dataspace with a selection equal to the intersection of + * src_intersect_space_id and src_space_id projected from src_space to dst_space on success + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5Sselect_project_intersection(long src_space_id, long dst_space_id, + long src_intersect_space_id) throws HDF5LibraryException; + + + // /////// unimplemented //////// + ///// Operations on dataspace selections ///// + + // + ///// Operations on dataspace selection iterators ///// + //public synchronized static native H5Ssel_iter_create(hid_t spaceid, size_t elmt_size, unsigned flags); + //public synchronized static native H5Ssel_iter_get_seq_list(hid_t sel_iter_id, size_t maxseq, size_t maxbytes, size_t *nseq, + // size_t *nbytes, hsize_t *off, size_t *len); + //public synchronized static native H5Ssel_iter_reset(hid_t sel_iter_id, hid_t space_id); + //public synchronized static native H5Ssel_iter_close(hid_t sel_iter_id); @@ -9737,6 +12240,23 @@ public class H5 implements java.io.Serializable { return H5Tenum_insert_int(type, name, value); } + /** + * H5Tenum_insert inserts a new enumeration datatype member into an enumeration datatype. + * + * @param type + * IN: Identifier of datatype. + * @param name + * IN: The name of the member + * @param value + * IN: The value of the member, data of the correct type + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public static int H5Tenum_insert(long type, String name, int value) throws HDF5LibraryException, NullPointerException { int[] val = { value }; @@ -10893,15 +13413,128 @@ public class H5 implements java.io.Serializable { // //////////////////////////////////////////////////////////// /// VOL Connector Functionality + /** + * H5VLregister_connector_by_name registers a new VOL connector as a member of the virtual object layer class. + * + * @param connector_name + * IN: name of the connector. + * @param vipl_id + * IN: VOL initialization property list which must be + * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT). + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id); + /** + * H5VLregister_connector_by_value registers a new VOL connector as a member of the virtual object layer class. + * + * @param connector_value + * IN: value of the connector. + * @param vipl_id + * IN: VOL initialization property list which must be + * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT). + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id); + /** + * H5VLis_connector_registered_by_name tests whether a VOL class has been registered. + * + * @param name + * IN: name of the connector. + * + * @return true if a VOL connector with that name has been registered + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native boolean H5VLis_connector_registered_by_name(String name); + /** + * H5VLis_connector_registered_by_value tests whether a VOL class has been registered. + * + * @param connector_value + * IN: value of the connector. + * + * @return true if a VOL connector with that value has been registered + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native boolean H5VLis_connector_registered_by_value(int connector_value); + /** + * H5VLget_connector_id retrieves the ID for a registered VOL connector for a given object. + * + * @param object_id + * IN: Identifier of the object. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLget_connector_id(long object_id); + /** + * H5VLget_connector_id_by_name retrieves the ID for a registered VOL connector. + * + * @param name + * IN: name of the connector. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLget_connector_id_by_name(String name); + /** + * H5VLget_connector_id_by_value retrieves the ID for a registered VOL connector. + * + * @param connector_value + * IN: value of the connector. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLget_connector_id_by_value(int connector_value); + /** + * H5VLget_connector_name returns the connector name for the VOL associated with the + * object or file ID. + * + * @param object_id + * IN: Identifier of the object. + * + * @return the connector name + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native String H5VLget_connector_name(long object_id); + /** + * H5VLclose closes a VOL connector ID. + * + * @param connector_id + * IN: Identifier of the connector. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5VLclose(long connector_id); + /** + * H5VLunregister_connector removes a VOL connector ID from the library. + * + * @param connector_id + * IN: Identifier of the connector. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5VLunregister_connector(long connector_id); // /////// unimplemented //////// @@ -10914,11 +13547,44 @@ public class H5 implements java.io.Serializable { // // // //////////////////////////////////////////////////////////// - public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException, NullPointerException; + /** + * H5Zfilter_avail checks if a filter is available. + * + * @param filter + * IN: filter number. + * + * @return a non-negative(TRUE/FALSE) value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException; + /** + * H5Zget_filter_info gets information about a pipeline data filter. + * + * @param filter + * IN: filter number. + * + * @return the filter information flags + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Zget_filter_info(int filter) throws HDF5LibraryException; - public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException, NullPointerException; + /** + * H5Zunregister unregisters a filter. + * + * @param filter + * IN: filter number. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException; // /////// unimplemented //////// diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java index 5801655..4125907 100644 --- a/java/src/hdf/hdf5lib/HDF5Constants.java +++ b/java/src/hdf/hdf5lib/HDF5Constants.java @@ -35,260 +35,650 @@ public class HDF5Constants { // Get the HDF5 constants from the library // // ///////////////////////////////////////////////////////////////////////// - public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX(); + //public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX(); + /** Special parameters for szip compression */ public static final int H5_SZIP_MAX_PIXELS_PER_BLOCK = H5_SZIP_MAX_PIXELS_PER_BLOCK(); + /** Special parameters for szip compression */ public static final int H5_SZIP_NN_OPTION_MASK = H5_SZIP_NN_OPTION_MASK(); + /** Special parameters for szip compression */ public static final int H5_SZIP_EC_OPTION_MASK = H5_SZIP_EC_OPTION_MASK(); + /** Special parameters for szip compression */ public static final int H5_SZIP_ALLOW_K13_OPTION_MASK = H5_SZIP_ALLOW_K13_OPTION_MASK(); + /** Special parameters for szip compression */ public static final int H5_SZIP_CHIP_OPTION_MASK = H5_SZIP_CHIP_OPTION_MASK(); + /** indices on links, unknown index type */ public static final int H5_INDEX_UNKNOWN = H5_INDEX_UNKNOWN(); + /** indices on links, index on names */ public static final int H5_INDEX_NAME = H5_INDEX_NAME(); + /** indices on links, index on creation order */ public static final int H5_INDEX_CRT_ORDER = H5_INDEX_CRT_ORDER(); + /** indices on links, number of indices defined */ public static final int H5_INDEX_N = H5_INDEX_N(); + /** Common iteration orders, Unknown order */ public static final int H5_ITER_UNKNOWN = H5_ITER_UNKNOWN(); + /** Common iteration orders, Increasing order */ public static final int H5_ITER_INC = H5_ITER_INC(); + /** Common iteration orders, Decreasing order */ public static final int H5_ITER_DEC = H5_ITER_DEC(); + /** Common iteration orders, No particular order, whatever is fastest */ public static final int H5_ITER_NATIVE = H5_ITER_NATIVE(); + /** Common iteration orders, Number of iteration orders */ public static final int H5_ITER_N = H5_ITER_N(); + /** */ public static final int H5AC_CURR_CACHE_CONFIG_VERSION = H5AC_CURR_CACHE_CONFIG_VERSION(); + /** */ public static final int H5AC_MAX_TRACE_FILE_NAME_LEN = H5AC_MAX_TRACE_FILE_NAME_LEN(); + /** */ public static final int H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY = H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY(); + /** */ public static final int H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED = H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED(); + /** */ public static final int H5C_incr_off = H5C_incr_off(); + /** */ public static final int H5C_incr_threshold = H5C_incr_threshold(); + /** */ public static final int H5C_flash_incr_off = H5C_flash_incr_off(); + /** */ public static final int H5C_flash_incr_add_space = H5C_flash_incr_add_space(); + /** */ public static final int H5C_decr_off = H5C_decr_off(); + /** */ public static final int H5C_decr_threshold = H5C_decr_threshold(); + /** */ public static final int H5C_decr_age_out = H5C_decr_age_out(); + /** */ public static final int H5C_decr_age_out_with_threshold = H5C_decr_age_out_with_threshold(); + /** */ public static final int H5D_CHUNK_IDX_BTREE = H5D_CHUNK_IDX_BTREE(); + /** */ public static final int H5D_ALLOC_TIME_DEFAULT = H5D_ALLOC_TIME_DEFAULT(); + /** */ public static final int H5D_ALLOC_TIME_EARLY = H5D_ALLOC_TIME_EARLY(); + /** */ public static final int H5D_ALLOC_TIME_ERROR = H5D_ALLOC_TIME_ERROR(); + /** */ public static final int H5D_ALLOC_TIME_INCR = H5D_ALLOC_TIME_INCR(); + /** */ public static final int H5D_ALLOC_TIME_LATE = H5D_ALLOC_TIME_LATE(); + /** */ public static final int H5D_FILL_TIME_ERROR = H5D_FILL_TIME_ERROR(); + /** */ public static final int H5D_FILL_TIME_ALLOC = H5D_FILL_TIME_ALLOC(); + /** */ public static final int H5D_FILL_TIME_NEVER = H5D_FILL_TIME_NEVER(); + /** */ public static final int H5D_FILL_TIME_IFSET = H5D_FILL_TIME_IFSET(); + /** */ public static final int H5D_FILL_VALUE_DEFAULT = H5D_FILL_VALUE_DEFAULT(); + /** */ public static final int H5D_FILL_VALUE_ERROR = H5D_FILL_VALUE_ERROR(); + /** */ public static final int H5D_FILL_VALUE_UNDEFINED = H5D_FILL_VALUE_UNDEFINED(); + /** */ public static final int H5D_FILL_VALUE_USER_DEFINED = H5D_FILL_VALUE_USER_DEFINED(); + /** */ public static final int H5D_LAYOUT_ERROR = H5D_LAYOUT_ERROR(); + /** */ public static final int H5D_CHUNKED = H5D_CHUNKED(); + /** */ public static final int H5D_COMPACT = H5D_COMPACT(); + /** */ public static final int H5D_CONTIGUOUS = H5D_CONTIGUOUS(); + /** */ public static final int H5D_VIRTUAL = H5D_VIRTUAL(); + /** */ public static final int H5D_NLAYOUTS = H5D_NLAYOUTS(); + /** */ public static final int H5D_SPACE_STATUS_ALLOCATED = H5D_SPACE_STATUS_ALLOCATED(); + /** */ public static final int H5D_SPACE_STATUS_ERROR = H5D_SPACE_STATUS_ERROR(); + /** */ public static final int H5D_SPACE_STATUS_NOT_ALLOCATED = H5D_SPACE_STATUS_NOT_ALLOCATED(); + /** */ public static final int H5D_SPACE_STATUS_PART_ALLOCATED = H5D_SPACE_STATUS_PART_ALLOCATED(); + /** */ public static final int H5D_VDS_ERROR = H5D_VDS_ERROR(); + /** */ public static final int H5D_VDS_FIRST_MISSING = H5D_VDS_FIRST_MISSING(); + /** */ public static final int H5D_VDS_LAST_AVAILABLE = H5D_VDS_LAST_AVAILABLE(); + /** */ public static final int H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS = H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS(); + /** Different kinds of error information - H5E_type_t */ public static final int H5E_MAJOR = H5E_MAJOR(); + /** Different kinds of error information - H5E_type_t */ public static final int H5E_MINOR = H5E_MINOR(); + /** Minor error codes - Object header related errors - Alignment error */ public static final long H5E_ALIGNMENT = H5E_ALIGNMENT(); + /** Minor error codes - Resource errors - Object already exists */ public static final long H5E_ALREADYEXISTS = H5E_ALREADYEXISTS(); + /** Minor error codes - Function entry/exit interface - Object already initialized */ public static final long H5E_ALREADYINIT = H5E_ALREADYINIT(); + /** Major error codes - Invalid arguments to routine */ public static final long H5E_ARGS = H5E_ARGS(); - public static final long H5E_ATOM = H5E_ATOM(); + /** Major error codes - Object ID */ + public static final long H5E_ID = H5E_ID(); + /** Major error codes - Attribute */ public static final long H5E_ATTR = H5E_ATTR(); - public static final long H5E_BADATOM = H5E_BADATOM(); + /** Minor error codes - Object ID related errors - Unable to find ID information (already closed?) */ + public static final long H5E_BADID = H5E_BADID(); + /** Minor error codes - File accessibility errors - Bad file ID accessed */ public static final long H5E_BADFILE = H5E_BADFILE(); + /** Minor error codes - Object ID related errors - Unable to find ID group information */ public static final long H5E_BADGROUP = H5E_BADGROUP(); + /** Minor error codes - Object header related errors - Iteration failed */ + public static final long H5E_BADITER = H5E_BADITER(); + /** Minor error codes - Object header related errors - Unrecognized message */ public static final long H5E_BADMESG = H5E_BADMESG(); + /** Minor error codes - Argument errors - Out of range */ public static final long H5E_BADRANGE = H5E_BADRANGE(); + /** Minor error codes - Dataspace errors - Invalid selection */ public static final long H5E_BADSELECT = H5E_BADSELECT(); + /** Datatype conversion errors - Bad size for object */ public static final long H5E_BADSIZE = H5E_BADSIZE(); + /** Minor error codes - Argument errors - Inappropriate type */ public static final long H5E_BADTYPE = H5E_BADTYPE(); + /** Minor error codes - Argument errors - Bad value */ public static final long H5E_BADVALUE = H5E_BADVALUE(); + /** Major error codes - B-Tree node */ public static final long H5E_BTREE = H5E_BTREE(); + /** Major error codes - Object cache */ public static final long H5E_CACHE = H5E_CACHE(); + /** I/O pipeline errors - Callback failed */ public static final long H5E_CALLBACK = H5E_CALLBACK(); + /** I/O pipeline errors - Error from filter 'can apply' callback */ public static final long H5E_CANAPPLY = H5E_CANAPPLY(); - // public static final long H5E_CANTALLOC = H5E_CANTALLOC(); + /** Minor error codes - Resource errors - Can't allocate space */ + public static final long H5E_CANTALLOC = H5E_CANTALLOC(); + /** Minor error codes - Dataspace errors - Can't append object */ + public static final long H5E_CANTAPPEND = H5E_CANTAPPEND(); + /** Minor error codes - Heap errors - Can't attach object */ + public static final long H5E_CANTATTACH = H5E_CANTATTACH(); + /** Minor error codes - Cache related errors - Unable to mark metadata as clean */ + public static final long H5E_CANTCLEAN = H5E_CANTCLEAN(); + /** Minor error codes - Dataspace errors - Can't clip hyperslab region */ public static final long H5E_CANTCLIP = H5E_CANTCLIP(); + /** Minor error codes - File accessibility errors - Unable to close file */ public static final long H5E_CANTCLOSEFILE = H5E_CANTCLOSEFILE(); + /** Minor error codes - Group related errors - Can't close object */ + public static final long H5E_CANTCLOSEOBJ = H5E_CANTCLOSEOBJ(); + /** Minor error codes - Dataspace errors - Can't compare objects */ + public static final long H5E_CANTCOMPARE = H5E_CANTCOMPARE(); + /** Minor error codes - Heap errors - Can't compute value */ + public static final long H5E_CANTCOMPUTE = H5E_CANTCOMPUTE(); + /** Datatype conversion errors - Can't convert datatypes */ public static final long H5E_CANTCONVERT = H5E_CANTCONVERT(); + /** Minor error codes - Resource errors - Unable to copy object */ public static final long H5E_CANTCOPY = H5E_CANTCOPY(); + /** Minor error codes - Cache related errors - Unable to cork an object */ + public static final long H5E_CANTCORK = H5E_CANTCORK(); + /** Minor error codes - Dataspace errors - Can't count elements */ public static final long H5E_CANTCOUNT = H5E_CANTCOUNT(); + /** Minor error codes - File accessibility errors - Unable to create file */ public static final long H5E_CANTCREATE = H5E_CANTCREATE(); + /** Minor error codes - Object ID related errors - Unable to decrement reference count */ public static final long H5E_CANTDEC = H5E_CANTDEC(); + /** Minor error codes - B-tree related errors - Unable to decode value */ public static final long H5E_CANTDECODE = H5E_CANTDECODE(); + /** Minor error codes - Object header related errors - Can't delete message */ public static final long H5E_CANTDELETE = H5E_CANTDELETE(); + /** Minor error codes - File accessibility errors - Unable to delete file */ public static final long H5E_CANTDELETEFILE = H5E_CANTDELETEFILE(); + /** Minor error codes - Cache related errors - Unable to create a flush dependency */ + public static final long H5E_CANTDEPEND = H5E_CANTDEPEND(); + /** Minor error codes - Cache related errors - Unable to mark metadata as dirty */ + public static final long H5E_CANTDIRTY = H5E_CANTDIRTY(); + /** Minor error codes - B-tree related errors - Unable to encode value */ public static final long H5E_CANTENCODE = H5E_CANTENCODE(); + /** Minor error codes - Cache related errors - Unable to expunge a metadata cache entry */ + public static final long H5E_CANTEXPUNGE = H5E_CANTEXPUNGE(); + /** Minor error codes - Heap errors - Can't extend heap's space */ + public static final long H5E_CANTEXTEND = H5E_CANTEXTEND(); + /** I/O pipeline errors - Filter operation failed */ + public static final long H5E_CANTFILTER = H5E_CANTFILTER(); + /** Minor error codes - Cache related errors - Unable to flush data from cache */ public static final long H5E_CANTFLUSH = H5E_CANTFLUSH(); + /** Minor error codes - Resource errors - Unable to free object */ public static final long H5E_CANTFREE = H5E_CANTFREE(); + /** Minor error codes - Parallel MPI - Can't gather data */ + public static final long H5E_CANTGATHER = H5E_CANTGATHER(); + /** Minor error codes - Resource errors - Unable to garbage collect */ + public static final long H5E_CANTGC = H5E_CANTGC(); + /** Minor error codes - Property list errors - Can't get value */ public static final long H5E_CANTGET = H5E_CANTGET(); + /** Minor error codes - Resource errors - Unable to compute size */ + public static final long H5E_CANTGETSIZE = H5E_CANTGETSIZE(); + /** Minor error codes - Object ID related errors - Unable to increment reference count */ public static final long H5E_CANTINC = H5E_CANTINC(); + /** Minor error codes - Function entry/exit interface - Unable to initialize object */ public static final long H5E_CANTINIT = H5E_CANTINIT(); + /** Minor error codes - Cache related errors - Unable to insert metadata into cache */ + public static final long H5E_CANTINS = H5E_CANTINS(); + /** Minor error codes - B-tree related errors - Unable to insert object */ public static final long H5E_CANTINSERT = H5E_CANTINSERT(); + /** Minor error codes - B-tree related errors - Unable to list node */ public static final long H5E_CANTLIST = H5E_CANTLIST(); + /** Minor error codes - Cache related errors - Unable to load metadata into cache */ public static final long H5E_CANTLOAD = H5E_CANTLOAD(); + /** Minor error codes - Resource errors - Unable to lock object */ public static final long H5E_CANTLOCK = H5E_CANTLOCK(); + /** Minor error codes - File accessibility errors Unable to lock file */ + public static final long H5E_CANTLOCKFILE = H5E_CANTLOCKFILE(); + /** Minor error codes - Cache related errors - Unable to mark a pinned entry as clean */ + public static final long H5E_CANTMARKCLEAN = H5E_CANTMARKCLEAN(); + /** Minor error codes - Cache related errors - Unable to mark a pinned entry as dirty */ + public static final long H5E_CANTMARKDIRTY = H5E_CANTMARKDIRTY(); + /** Minor error codes - Cache related errors - Unable to mark an entry as unserialized */ + public static final long H5E_CANTMARKSERIALIZED = H5E_CANTMARKSERIALIZED(); + /** Minor error codes - Cache related errors - Unable to mark an entry as serialized */ + public static final long H5E_CANTMARKUNSERIALIZED = H5E_CANTMARKUNSERIALIZED(); + /** Minor error codes - Free space errors - Can't merge objects */ + public static final long H5E_CANTMERGE = H5E_CANTMERGE(); + /** Minor error codes - B-tree related errors - Unable to modify record */ + public static final long H5E_CANTMODIFY = H5E_CANTMODIFY(); + /** Minor error codes - Link related errors - Can't move object */ + public static final long H5E_CANTMOVE = H5E_CANTMOVE(); + /** Minor error codes - Dataspace errors - Can't move to next iterator location */ public static final long H5E_CANTNEXT = H5E_CANTNEXT(); + /** Minor error codes - Cache related errors - Unable to notify object about action */ + public static final long H5E_CANTNOTIFY = H5E_CANTNOTIFY(); + /** Minor error codes - File accessibility errors - Unable to open file */ public static final long H5E_CANTOPENFILE = H5E_CANTOPENFILE(); + /** Minor error codes - Group related errors - Can't open object */ public static final long H5E_CANTOPENOBJ = H5E_CANTOPENOBJ(); - // public static final long H5E_CANTRECV = H5E_CANTRECV(); + /** Minor error codes - Heap errors - Can't operate on object */ + public static final long H5E_CANTOPERATE = H5E_CANTOPERATE(); + /** Minor error codes - Object header related errors - Can't pack messages */ + public static final long H5E_CANTPACK = H5E_CANTPACK(); + /** Minor error codes - Cache related errors - Unable to pin cache entry */ + public static final long H5E_CANTPIN = H5E_CANTPIN(); + /** Minor error codes - Cache related errors - Unable to protect metadata */ + public static final long H5E_CANTPROTECT = H5E_CANTPROTECT(); + /** Minor error codes - Parallel MPI - Can't receive data */ + public static final long H5E_CANTRECV = H5E_CANTRECV(); + /** Minor error codes - B-tree related errors - Unable to redistribute records */ + public static final long H5E_CANTREDISTRIBUTE = H5E_CANTREDISTRIBUTE(); + /** Minor error codes - Object ID related errors - Unable to register new ID */ public static final long H5E_CANTREGISTER = H5E_CANTREGISTER(); + /** Minor error codes - Function entry/exit interface - Unable to release object */ public static final long H5E_CANTRELEASE = H5E_CANTRELEASE(); + /** Minor error codes - B-tree related errors - Unable to remove object */ + public static final long H5E_CANTREMOVE = H5E_CANTREMOVE(); + /** Minor error codes - Object header related errors - Unable to rename object */ + public static final long H5E_CANTRENAME = H5E_CANTRENAME(); + /** Minor error codes - Object header related errors - Can't reset object */ + public static final long H5E_CANTRESET = H5E_CANTRESET(); + /** Minor error codes - Cache related errors - Unable to resize a metadata cache entry */ + public static final long H5E_CANTRESIZE = H5E_CANTRESIZE(); + /** Minor error codes - Heap errors - Can't restore condition */ + public static final long H5E_CANTRESTORE = H5E_CANTRESTORE(); + /** Minor error codes - Free space errors - Can't revive object */ + public static final long H5E_CANTREVIVE = H5E_CANTREVIVE(); + /** Minor error codes - Free space errors - Can't shrink container */ + public static final long H5E_CANTSHRINK = H5E_CANTSHRINK(); + /** Minor error codes - Dataspace errors - Can't select hyperslab */ public static final long H5E_CANTSELECT = H5E_CANTSELECT(); + /** Minor error codes - Cache related errors - Unable to serialize data from cache */ + public static final long H5E_CANTSERIALIZE = H5E_CANTSERIALIZE(); + /** Minor error codes - Property list errors - Can't set value */ public static final long H5E_CANTSET = H5E_CANTSET(); + /** Minor error codes - Link related errors - Can't sort objects */ + public static final long H5E_CANTSORT = H5E_CANTSORT(); + /** Minor error codes - B-tree related errors - Unable to split node */ public static final long H5E_CANTSPLIT = H5E_CANTSPLIT(); + /** Minor error codes - B-tree related errors - Unable to swap records */ + public static final long H5E_CANTSWAP = H5E_CANTSWAP(); + /** Minor error codes - Cache related errors - Unable to tag metadata in the cache */ + public static final long H5E_CANTTAG = H5E_CANTTAG(); + /** Minor error codes - Cache related errors - Unable to uncork an object */ + public static final long H5E_CANTUNCORK = H5E_CANTUNCORK(); + /** Minor error codes - Cache related errors - Unable to destroy a flush dependency */ + public static final long H5E_CANTUNDEPEND = H5E_CANTUNDEPEND(); + /** Minor error codes - Resource errors - Unable to unlock object */ public static final long H5E_CANTUNLOCK = H5E_CANTUNLOCK(); + /** Minor error codes - File accessibility errors Unable to unlock file */ + public static final long H5E_CANTUNLOCKFILE = H5E_CANTUNLOCKFILE(); + /** Minor error codes - Cache related errors - Unable to un-pin cache entry */ + public static final long H5E_CANTUNPIN = H5E_CANTUNPIN(); + /** Minor error codes - Cache related errors - Unable to unprotect metadata */ + public static final long H5E_CANTUNPROTECT = H5E_CANTUNPROTECT(); + /** Minor error codes - Cache related errors - Unable to mark metadata as unserialized */ + public static final long H5E_CANTUNSERIALIZE = H5E_CANTUNSERIALIZE(); + /** Minor error codes - Heap errors - Can't update object */ + public static final long H5E_CANTUPDATE = H5E_CANTUPDATE(); + /** Generic low-level file I/O errors - Close failed */ public static final long H5E_CLOSEERROR = H5E_CLOSEERROR(); + /** Minor error codes - Group related errors - Name component is too long */ public static final long H5E_COMPLEN = H5E_COMPLEN(); + /** Major error codes - API Context */ + public static final long H5E_CONTEXT = H5E_CONTEXT(); + /** Major error codes - Dataset */ public static final long H5E_DATASET = H5E_DATASET(); + /** Major error codes - Dataspace */ public static final long H5E_DATASPACE = H5E_DATASPACE(); + /** Major error codes - Datatype */ public static final long H5E_DATATYPE = H5E_DATATYPE(); + /** Value for the default error stack */ public static final long H5E_DEFAULT = H5E_DEFAULT(); + /** Minor error codes - Property list errors - Duplicate class name in parent class */ public static final long H5E_DUPCLASS = H5E_DUPCLASS(); + /** Major error codes - Extensible Array */ + public static final long H5E_EARRAY = H5E_EARRAY(); + /** Major error codes - External file list */ public static final long H5E_EFL = H5E_EFL(); + /** Major error codes - Error API */ + public static final long H5E_ERROR = H5E_ERROR(); + /** Minor error codes - B-tree related errors - Object already exists */ public static final long H5E_EXISTS = H5E_EXISTS(); + /** Major error codes - Fixed Array */ + public static final long H5E_FARRAY = H5E_FARRAY(); + /** Generic low-level file I/O errors - File control (fcntl) failed */ public static final long H5E_FCNTL = H5E_FCNTL(); + /** Major error codes - File accessibility */ public static final long H5E_FILE = H5E_FILE(); + /** Minor error codes - File accessibility errors - File already exists */ public static final long H5E_FILEEXISTS = H5E_FILEEXISTS(); + /** Minor error codes - File accessibility errors - File already open */ public static final long H5E_FILEOPEN = H5E_FILEOPEN(); + /** Major error codes - Free Space Manager */ + public static final long H5E_FSPACE = H5E_FSPACE(); + /** Major error codes - Function entry/exit */ public static final long H5E_FUNC = H5E_FUNC(); + /** Major error codes - Heap */ public static final long H5E_HEAP = H5E_HEAP(); + /** Minor error codes - Dataspace errors - Internal states are inconsistent */ + public static final long H5E_INCONSISTENTSTATE = H5E_INCONSISTENTSTATE(); + /** Major error codes - Internal error (too specific to document in detail) */ public static final long H5E_INTERNAL = H5E_INTERNAL(); + /** Major error codes - Low-level I/O */ public static final long H5E_IO = H5E_IO(); + /** Major error codes - Links */ public static final long H5E_LINK = H5E_LINK(); + /** Minor error codes - Object header related errors - Bad object header link count */ public static final long H5E_LINKCOUNT = H5E_LINKCOUNT(); + /** Minor error codes - Cache related errors - Failure in the cache logging framework */ + public static final long H5E_LOGGING = H5E_LOGGING(); + /** Major error codes - Map */ + public static final long H5E_MAP = H5E_MAP(); + /** Minor error codes - File accessibility errors - File mount error */ public static final long H5E_MOUNT = H5E_MOUNT(); + /** Minor error codes - Parallel MPI - Some MPI function failed */ public static final long H5E_MPI = H5E_MPI(); + /** Minor error codes - Parallel MPI - MPI Error String */ public static final long H5E_MPIERRSTR = H5E_MPIERRSTR(); + /** Minor error codes - Link related errors - Too many soft links in path */ + public static final long H5E_NLINKS = H5E_NLINKS(); + /** Minor error codes - Parallel MPI - Can't perform independent IO */ + public static final long H5E_NO_INDEPENDENT = H5E_NO_INDEPENDENT(); + /** I/O pipeline errors - Filter present but encoding disabled */ + public static final long H5E_NOENCODER = H5E_NOENCODER(); + /** I/O pipeline errors - Requested filter is not available */ public static final long H5E_NOFILTER = H5E_NOFILTER(); + /** Minor error codes - Object ID related errors - Out of IDs for group */ public static final long H5E_NOIDS = H5E_NOIDS(); + /** Major error codes - No error */ public static final long H5E_NONE_MAJOR = H5E_NONE_MAJOR(); + /** No error */ public static final long H5E_NONE_MINOR = H5E_NONE_MINOR(); + /** Minor error codes - Resource errors - No space available for allocation */ public static final long H5E_NOSPACE = H5E_NOSPACE(); + /** Minor error codes - Cache related errors - Metadata not currently cached */ public static final long H5E_NOTCACHED = H5E_NOTCACHED(); + /** Minor error codes - B-tree related errors - Object not found */ public static final long H5E_NOTFOUND = H5E_NOTFOUND(); + /** Minor error codes - File accessibility errors - Not an HDF5 file */ public static final long H5E_NOTHDF5 = H5E_NOTHDF5(); + /** Minor error codes - Link related errors - Link class not registered */ + public static final long H5E_NOTREGISTERED = H5E_NOTREGISTERED(); + /** Minor error codes - Resource errors - Object is already open */ + public static final long H5E_OBJOPEN = H5E_OBJOPEN(); + /** Major error codes - Object header */ public static final long H5E_OHDR = H5E_OHDR(); + /** Minor error codes - Plugin errors - Can't open directory or file */ + public static final long H5E_OPENERROR = H5E_OPENERROR(); + /** Generic low-level file I/O errors - Address overflowed */ public static final long H5E_OVERFLOW = H5E_OVERFLOW(); + /** Major error codes - Page Buffering */ + public static final long H5E_PAGEBUF = H5E_PAGEBUF(); + /** Minor error codes - Group related errors - Problem with path to object */ + public static final long H5E_PATH = H5E_PATH(); + /** Major error codes - Data filters */ public static final long H5E_PLINE = H5E_PLINE(); + /** Major error codes - Property lists */ public static final long H5E_PLIST = H5E_PLIST(); + /** Major error codes - Plugin for dynamically loaded library */ + public static final long H5E_PLUGIN = H5E_PLUGIN(); + /** Minor error codes - Cache related errors - Protected metadata error */ public static final long H5E_PROTECT = H5E_PROTECT(); + /** Generic low-level file I/O errors - Read failed */ public static final long H5E_READERROR = H5E_READERROR(); + /** Major error codes - References */ public static final long H5E_REFERENCE = H5E_REFERENCE(); + /** Major error codes - Resource unavailable */ public static final long H5E_RESOURCE = H5E_RESOURCE(); + /** Major error codes - Reference Counted Strings */ public static final long H5E_RS = H5E_RS(); + /** Generic low-level file I/O errors - Seek failed */ public static final long H5E_SEEKERROR = H5E_SEEKERROR(); + /** Minor error codes - Property list errors - Disallowed operation */ + public static final long H5E_SETDISALLOWED = H5E_SETDISALLOWED(); + /** I/O pipeline errors - Error from filter 'set local' callback */ public static final long H5E_SETLOCAL = H5E_SETLOCAL(); + /** Major error codes - Skip Lists */ + public static final long H5E_SLIST = H5E_SLIST(); + /** Major error codes - Shared Object Header Messages */ + public static final long H5E_SOHM = H5E_SOHM(); + /** Major error codes - Data storage */ public static final long H5E_STORAGE = H5E_STORAGE(); + /** Major error codes - Symbol table */ public static final long H5E_SYM = H5E_SYM(); + /** Minor error codes - System level errors - System error message */ + public static final long H5E_SYSERRSTR = H5E_SYSERRSTR(); + /** Minor error codes - Cache related errors - Internal error detected */ + public static final long H5E_SYSTEM = H5E_SYSTEM(); + /** Minor error codes - Link related errors - Link traversal failure */ + public static final long H5E_TRAVERSE = H5E_TRAVERSE(); + /** Minor error codes - File accessibility errors - File has been truncated */ public static final long H5E_TRUNCATED = H5E_TRUNCATED(); + /** Major error codes - Ternary Search Trees */ public static final long H5E_TST = H5E_TST(); + /** Minor error codes - Argument errors - Information is uinitialized */ public static final long H5E_UNINITIALIZED = H5E_UNINITIALIZED(); + /** Minor error codes - Argument errors - Feature is unsupported */ public static final long H5E_UNSUPPORTED = H5E_UNSUPPORTED(); + /** Minor error codes - Object header related errors - Wrong version number */ public static final long H5E_VERSION = H5E_VERSION(); + /** Major error codes - Virtual File Layer */ public static final long H5E_VFL = H5E_VFL(); + /** Major error codes - Virtual Object Layer */ public static final long H5E_VOL = H5E_VOL(); + /** Error stack traversal direction - begin at API function, end deep */ public static final long H5E_WALK_DOWNWARD = H5E_WALK_DOWNWARD(); + /** Error stack traversal direction - begin deep, end at API function */ public static final long H5E_WALK_UPWARD = H5E_WALK_UPWARD(); + /** Generic low-level file I/O errors - Write failed */ public static final long H5E_WRITEERROR = H5E_WRITEERROR(); + /** */ private static final int H5ES_STATUS_IN_PROGRESS = H5ES_STATUS_IN_PROGRESS(); + /** */ private static final int H5ES_STATUS_SUCCEED = H5ES_STATUS_SUCCEED(); + /** */ private static final int H5ES_STATUS_FAIL = H5ES_STATUS_FAIL(); - private static final int H5ES_STATUS_CANCELED = H5ES_STATUS_CANCELED(); + /** */ public static final int H5F_ACC_CREAT = H5F_ACC_CREAT(); + /** */ public static final int H5F_ACC_EXCL = H5F_ACC_EXCL(); + /** */ public static final int H5F_ACC_RDONLY = H5F_ACC_RDONLY(); + /** */ public static final int H5F_ACC_RDWR = H5F_ACC_RDWR(); + /** */ public static final int H5F_ACC_TRUNC = H5F_ACC_TRUNC(); + /** */ public static final int H5F_ACC_DEFAULT = H5F_ACC_DEFAULT(); + /** */ public static final int H5F_ACC_SWMR_READ = H5F_ACC_SWMR_READ(); + /** */ public static final int H5F_ACC_SWMR_WRITE = H5F_ACC_SWMR_WRITE(); + /** */ public static final int H5F_CLOSE_DEFAULT = H5F_CLOSE_DEFAULT(); + /** */ public static final int H5F_CLOSE_SEMI = H5F_CLOSE_SEMI(); + /** */ public static final int H5F_CLOSE_STRONG = H5F_CLOSE_STRONG(); + /** */ public static final int H5F_CLOSE_WEAK = H5F_CLOSE_WEAK(); + /** */ public static final int H5F_LIBVER_ERROR = H5F_LIBVER_ERROR(); + /** */ public static final int H5F_LIBVER_EARLIEST = H5F_LIBVER_EARLIEST(); + /** */ public static final int H5F_LIBVER_V18 = H5F_LIBVER_V18(); + /** */ public static final int H5F_LIBVER_V110 = H5F_LIBVER_V110(); + /** */ public static final int H5F_LIBVER_V112 = H5F_LIBVER_V112(); + /** */ public static final int H5F_LIBVER_V114 = H5F_LIBVER_V114(); + /** */ public static final int H5F_LIBVER_NBOUNDS = H5F_LIBVER_NBOUNDS(); + /** */ public static final int H5F_LIBVER_LATEST = H5F_LIBVER_LATEST(); + /** */ public static final int H5F_OBJ_ALL = H5F_OBJ_ALL(); + /** */ public static final int H5F_OBJ_ATTR = H5F_OBJ_ATTR(); + /** */ public static final int H5F_OBJ_DATASET = H5F_OBJ_DATASET(); + /** */ public static final int H5F_OBJ_DATATYPE = H5F_OBJ_DATATYPE(); + /** */ public static final int H5F_OBJ_FILE = H5F_OBJ_FILE(); + /** */ public static final int H5F_OBJ_GROUP = H5F_OBJ_GROUP(); + /** */ public static final int H5F_OBJ_LOCAL = H5F_OBJ_LOCAL(); + /** */ public static final int H5F_SCOPE_GLOBAL = H5F_SCOPE_GLOBAL(); + /** */ public static final int H5F_SCOPE_LOCAL = H5F_SCOPE_LOCAL(); + /** */ public static final int H5F_UNLIMITED = H5F_UNLIMITED(); + /** */ public static final int H5F_FSPACE_STRATEGY_FSM_AGGR = H5F_FSPACE_STRATEGY_FSM_AGGR(); + /** */ public static final int H5F_FSPACE_STRATEGY_AGGR = H5F_FSPACE_STRATEGY_AGGR(); + /** */ public static final int H5F_FSPACE_STRATEGY_PAGE = H5F_FSPACE_STRATEGY_PAGE(); + /** */ public static final int H5F_FSPACE_STRATEGY_NONE = H5F_FSPACE_STRATEGY_NONE(); + /** */ public static final int H5F_FSPACE_STRATEGY_NTYPES = H5F_FSPACE_STRATEGY_NTYPES(); + /** */ public static final long H5FD_CORE = H5FD_CORE(); + /** */ public static final long H5FD_DIRECT = H5FD_DIRECT(); + /** */ public static final long H5FD_FAMILY = H5FD_FAMILY(); + /** */ public static final long H5FD_LOG = H5FD_LOG(); + /** */ public static final long H5FD_MPIO = H5FD_MPIO(); + /** */ public static final long H5FD_MULTI = H5FD_MULTI(); + /** */ public static final long H5FD_SEC2 = H5FD_SEC2(); + /** */ public static final long H5FD_STDIO = H5FD_STDIO(); + /** */ public static final long H5FD_WINDOWS = H5FD_WINDOWS(); + /** */ public static final long H5FD_ROS3 = H5FD_ROS3(); + /** */ public static final long H5FD_HDFS = H5FD_HDFS(); + /** */ public static final int H5FD_LOG_LOC_READ = H5FD_LOG_LOC_READ(); + /** */ public static final int H5FD_LOG_LOC_WRITE = H5FD_LOG_LOC_WRITE(); + /** */ public static final int H5FD_LOG_LOC_SEEK = H5FD_LOG_LOC_SEEK(); + /** */ public static final int H5FD_LOG_LOC_IO = H5FD_LOG_LOC_IO(); + /** */ public static final int H5FD_LOG_FILE_READ = H5FD_LOG_FILE_READ(); + /** */ public static final int H5FD_LOG_FILE_WRITE = H5FD_LOG_FILE_WRITE(); + /** */ public static final int H5FD_LOG_FILE_IO = H5FD_LOG_FILE_IO(); + /** */ public static final int H5FD_LOG_FLAVOR = H5FD_LOG_FLAVOR(); + /** */ public static final int H5FD_LOG_NUM_READ = H5FD_LOG_NUM_READ(); + /** */ public static final int H5FD_LOG_NUM_WRITE = H5FD_LOG_NUM_WRITE(); + /** */ public static final int H5FD_LOG_NUM_SEEK = H5FD_LOG_NUM_SEEK(); + /** */ public static final int H5FD_LOG_NUM_TRUNCATE = H5FD_LOG_NUM_TRUNCATE(); + /** */ public static final int H5FD_LOG_NUM_IO = H5FD_LOG_NUM_IO(); + /** */ public static final int H5FD_LOG_TIME_OPEN = H5FD_LOG_TIME_OPEN(); + /** */ public static final int H5FD_LOG_TIME_STAT = H5FD_LOG_TIME_STAT(); + /** */ public static final int H5FD_LOG_TIME_READ = H5FD_LOG_TIME_READ(); + /** */ public static final int H5FD_LOG_TIME_WRITE = H5FD_LOG_TIME_WRITE(); + /** */ public static final int H5FD_LOG_TIME_SEEK = H5FD_LOG_TIME_SEEK(); + /** */ public static final int H5FD_LOG_TIME_CLOSE = H5FD_LOG_TIME_CLOSE(); + /** */ public static final int H5FD_LOG_TIME_IO = H5FD_LOG_TIME_IO(); + /** */ public static final int H5FD_LOG_ALLOC = H5FD_LOG_ALLOC(); + /** */ public static final int H5FD_LOG_ALL = H5FD_LOG_ALL(); + /** */ public static final int H5FD_MEM_NOLIST = H5FD_MEM_NOLIST(); + /** */ public static final int H5FD_MEM_DEFAULT = H5FD_MEM_DEFAULT(); + /** */ public static final int H5FD_MEM_SUPER = H5FD_MEM_SUPER(); + /** */ public static final int H5FD_MEM_BTREE = H5FD_MEM_BTREE(); + /** */ public static final int H5FD_MEM_DRAW = H5FD_MEM_DRAW(); + /** */ public static final int H5FD_MEM_GHEAP = H5FD_MEM_GHEAP(); + /** */ public static final int H5FD_MEM_LHEAP = H5FD_MEM_LHEAP(); + /** */ public static final int H5FD_MEM_OHDR = H5FD_MEM_OHDR(); + /** */ public static final int H5FD_MEM_NTYPES = H5FD_MEM_NTYPES(); + /** */ public static final long H5FD_DEFAULT_HADDR_SIZE = H5FD_DEFAULT_HADDR_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_SIZE = H5FD_MEM_DEFAULT_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_SUPER_SIZE = H5FD_MEM_DEFAULT_SUPER_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_BTREE_SIZE = H5FD_MEM_DEFAULT_BTREE_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_DRAW_SIZE = H5FD_MEM_DEFAULT_DRAW_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_GHEAP_SIZE = H5FD_MEM_DEFAULT_GHEAP_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_LHEAP_SIZE = H5FD_MEM_DEFAULT_LHEAP_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_OHDR_SIZE = H5FD_MEM_DEFAULT_OHDR_SIZE(); // public static final int H5G_DATASET = H5G_DATASET(); @@ -308,405 +698,802 @@ public class HDF5Constants { // public static final int H5G_TYPE = H5G_TYPE(); // public static final int H5G_UNKNOWN = H5G_UNKNOWN(); + /** */ public static final int H5G_STORAGE_TYPE_UNKNOWN = H5G_STORAGE_TYPE_UNKNOWN(); + /** */ public static final int H5G_STORAGE_TYPE_SYMBOL_TABLE = H5G_STORAGE_TYPE_SYMBOL_TABLE(); + /** */ public static final int H5G_STORAGE_TYPE_COMPACT = H5G_STORAGE_TYPE_COMPACT(); + /** */ public static final int H5G_STORAGE_TYPE_DENSE = H5G_STORAGE_TYPE_DENSE(); + /** */ public static final int H5I_ATTR = H5I_ATTR(); + /** */ public static final int H5I_BADID = H5I_BADID(); + /** */ public static final int H5I_DATASET = H5I_DATASET(); + /** */ public static final int H5I_DATASPACE = H5I_DATASPACE(); + /** */ public static final int H5I_DATATYPE = H5I_DATATYPE(); + /** */ public static final int H5I_ERROR_CLASS = H5I_ERROR_CLASS(); + /** */ public static final int H5I_ERROR_MSG = H5I_ERROR_MSG(); + /** */ public static final int H5I_ERROR_STACK = H5I_ERROR_STACK(); + /** */ public static final int H5I_FILE = H5I_FILE(); + /** */ public static final int H5I_GENPROP_CLS = H5I_GENPROP_CLS(); + /** */ public static final int H5I_GENPROP_LST = H5I_GENPROP_LST(); + /** */ public static final int H5I_GROUP = H5I_GROUP(); + /** */ public static final int H5I_INVALID_HID = H5I_INVALID_HID(); + /** */ public static final int H5I_NTYPES = H5I_NTYPES(); + /** */ public static final int H5I_UNINIT = H5I_UNINIT(); + /** */ public static final int H5I_VFL = H5I_VFL(); + /** */ public static final int H5I_VOL = H5I_VOL(); + /** */ public static final int H5L_TYPE_ERROR = H5L_TYPE_ERROR(); + /** */ public static final int H5L_TYPE_HARD = H5L_TYPE_HARD(); + /** */ public static final int H5L_TYPE_SOFT = H5L_TYPE_SOFT(); + /** */ public static final int H5L_TYPE_EXTERNAL = H5L_TYPE_EXTERNAL(); + /** */ public static final int H5L_TYPE_MAX = H5L_TYPE_MAX(); + /** */ public static final int H5O_COPY_SHALLOW_HIERARCHY_FLAG = H5O_COPY_SHALLOW_HIERARCHY_FLAG(); + /** */ public static final int H5O_COPY_EXPAND_SOFT_LINK_FLAG = H5O_COPY_EXPAND_SOFT_LINK_FLAG(); + /** */ public static final int H5O_COPY_EXPAND_EXT_LINK_FLAG = H5O_COPY_EXPAND_EXT_LINK_FLAG(); + /** */ public static final int H5O_COPY_EXPAND_REFERENCE_FLAG = H5O_COPY_EXPAND_REFERENCE_FLAG(); + /** */ public static final int H5O_COPY_WITHOUT_ATTR_FLAG = H5O_COPY_WITHOUT_ATTR_FLAG(); + /** */ public static final int H5O_COPY_PRESERVE_NULL_FLAG = H5O_COPY_PRESERVE_NULL_FLAG(); + /** */ public static final int H5O_INFO_BASIC = H5O_INFO_BASIC(); + /** */ public static final int H5O_INFO_TIME = H5O_INFO_TIME(); + /** */ public static final int H5O_INFO_NUM_ATTRS = H5O_INFO_NUM_ATTRS(); + /** */ public static final int H5O_INFO_ALL = H5O_INFO_ALL(); + /** */ public static final int H5O_NATIVE_INFO_HDR = H5O_NATIVE_INFO_HDR(); + /** */ public static final int H5O_NATIVE_INFO_META_SIZE = H5O_NATIVE_INFO_META_SIZE(); + /** */ public static final int H5O_NATIVE_INFO_ALL = H5O_NATIVE_INFO_ALL(); + /** */ public static final int H5O_SHMESG_NONE_FLAG = H5O_SHMESG_NONE_FLAG(); + /** */ public static final int H5O_SHMESG_SDSPACE_FLAG = H5O_SHMESG_SDSPACE_FLAG(); + /** */ public static final int H5O_SHMESG_DTYPE_FLAG = H5O_SHMESG_DTYPE_FLAG(); + /** */ public static final int H5O_SHMESG_FILL_FLAG = H5O_SHMESG_FILL_FLAG(); + /** */ public static final int H5O_SHMESG_PLINE_FLAG = H5O_SHMESG_PLINE_FLAG(); + /** */ public static final int H5O_SHMESG_ATTR_FLAG = H5O_SHMESG_ATTR_FLAG(); + /** */ public static final int H5O_SHMESG_ALL_FLAG = H5O_SHMESG_ALL_FLAG(); + /** */ public static final int H5O_TYPE_UNKNOWN = H5O_TYPE_UNKNOWN(); + /** */ public static final int H5O_TYPE_GROUP = H5O_TYPE_GROUP(); + /** */ public static final int H5O_TYPE_DATASET = H5O_TYPE_DATASET(); + /** */ public static final int H5O_TYPE_NAMED_DATATYPE = H5O_TYPE_NAMED_DATATYPE(); + /** */ public static final int H5O_TYPE_NTYPES = H5O_TYPE_NTYPES(); + /** */ public static final int H5O_MAX_TOKEN_SIZE = H5O_MAX_TOKEN_SIZE(); + /** */ public static final H5O_token_t H5O_TOKEN_UNDEF = H5O_TOKEN_UNDEF(); + /** */ public static final long H5P_ROOT = H5P_ROOT(); + /** */ public static final long H5P_OBJECT_CREATE = H5P_OBJECT_CREATE(); + /** */ public static final long H5P_FILE_CREATE = H5P_FILE_CREATE(); + /** */ public static final long H5P_FILE_ACCESS = H5P_FILE_ACCESS(); + /** */ public static final long H5P_DATASET_CREATE = H5P_DATASET_CREATE(); + /** */ public static final long H5P_DATASET_ACCESS = H5P_DATASET_ACCESS(); + /** */ public static final long H5P_DATASET_XFER = H5P_DATASET_XFER(); + /** */ public static final long H5P_FILE_MOUNT = H5P_FILE_MOUNT(); + /** */ public static final long H5P_GROUP_CREATE = H5P_GROUP_CREATE(); + /** */ public static final long H5P_GROUP_ACCESS = H5P_GROUP_ACCESS(); + /** */ public static final long H5P_DATATYPE_CREATE = H5P_DATATYPE_CREATE(); + /** */ public static final long H5P_DATATYPE_ACCESS = H5P_DATATYPE_ACCESS(); + /** */ public static final long H5P_STRING_CREATE = H5P_STRING_CREATE(); + /** */ public static final long H5P_ATTRIBUTE_CREATE = H5P_ATTRIBUTE_CREATE(); + /** */ public static final long H5P_ATTRIBUTE_ACCESS = H5P_ATTRIBUTE_ACCESS(); + /** */ public static final long H5P_OBJECT_COPY = H5P_OBJECT_COPY(); + /** */ public static final long H5P_LINK_CREATE = H5P_LINK_CREATE(); + /** */ public static final long H5P_LINK_ACCESS = H5P_LINK_ACCESS(); + /** */ public static final long H5P_VOL_INITIALIZE = H5P_VOL_INITIALIZE(); + /** */ public static final long H5P_FILE_CREATE_DEFAULT = H5P_FILE_CREATE_DEFAULT(); + /** */ public static final long H5P_FILE_ACCESS_DEFAULT = H5P_FILE_ACCESS_DEFAULT(); + /** */ public static final long H5P_DATASET_CREATE_DEFAULT = H5P_DATASET_CREATE_DEFAULT(); + /** */ public static final long H5P_DATASET_ACCESS_DEFAULT = H5P_DATASET_ACCESS_DEFAULT(); + /** */ public static final long H5P_DATASET_XFER_DEFAULT = H5P_DATASET_XFER_DEFAULT(); + /** */ public static final long H5P_FILE_MOUNT_DEFAULT = H5P_FILE_MOUNT_DEFAULT(); + /** */ public static final long H5P_GROUP_CREATE_DEFAULT = H5P_GROUP_CREATE_DEFAULT(); + /** */ public static final long H5P_GROUP_ACCESS_DEFAULT = H5P_GROUP_ACCESS_DEFAULT(); + /** */ public static final long H5P_DATATYPE_CREATE_DEFAULT = H5P_DATATYPE_CREATE_DEFAULT(); + /** */ public static final long H5P_DATATYPE_ACCESS_DEFAULT = H5P_DATATYPE_ACCESS_DEFAULT(); + /** */ public static final long H5P_ATTRIBUTE_CREATE_DEFAULT = H5P_ATTRIBUTE_CREATE_DEFAULT(); + /** */ public static final long H5P_ATTRIBUTE_ACCESS_DEFAULT = H5P_ATTRIBUTE_ACCESS_DEFAULT(); + /** */ public static final long H5P_OBJECT_COPY_DEFAULT = H5P_OBJECT_COPY_DEFAULT(); + /** */ public static final long H5P_LINK_CREATE_DEFAULT = H5P_LINK_CREATE_DEFAULT(); + /** */ public static final long H5P_LINK_ACCESS_DEFAULT = H5P_LINK_ACCESS_DEFAULT(); + /** */ public static final long H5P_VOL_INITIALIZE_DEFAULT = H5P_VOL_INITIALIZE_DEFAULT(); + /** */ public static final int H5P_CRT_ORDER_TRACKED = H5P_CRT_ORDER_TRACKED(); + /** */ public static final int H5P_CRT_ORDER_INDEXED = H5P_CRT_ORDER_INDEXED(); + /** */ public static final long H5P_DEFAULT = H5P_DEFAULT(); + /** */ public static final int H5PL_TYPE_ERROR = H5PL_TYPE_ERROR(); + /** */ public static final int H5PL_TYPE_FILTER = H5PL_TYPE_FILTER(); + /** */ public static final int H5PL_TYPE_VOL = H5PL_TYPE_VOL(); + /** */ public static final int H5PL_TYPE_NONE = H5PL_TYPE_NONE(); + /** */ public static final int H5PL_FILTER_PLUGIN = H5PL_FILTER_PLUGIN(); + /** */ public static final int H5PL_VOL_PLUGIN = H5PL_VOL_PLUGIN(); + /** */ public static final int H5PL_ALL_PLUGIN = H5PL_ALL_PLUGIN(); + /** */ public static final int H5R_ATTR = H5R_ATTR(); + /** */ public static final int H5R_BADTYPE = H5R_BADTYPE(); + /** */ public static final int H5R_DATASET_REGION = H5R_DATASET_REGION(); + /** */ public static final int H5R_DATASET_REGION1 = H5R_DATASET_REGION1(); + /** */ public static final int H5R_DATASET_REGION2 = H5R_DATASET_REGION2(); + /** */ public static final int H5R_MAXTYPE = H5R_MAXTYPE(); + /** */ public static final int H5R_REF_BUF_SIZE = H5R_REF_BUF_SIZE(); + /** */ public static final int H5R_OBJ_REF_BUF_SIZE = H5R_OBJ_REF_BUF_SIZE(); + /** */ public static final int H5R_OBJECT = H5R_OBJECT(); + /** */ public static final int H5R_OBJECT1 = H5R_OBJECT1(); + /** */ public static final int H5R_OBJECT2 = H5R_OBJECT2(); + /** Define atomic datatypes */ public static final int H5S_ALL = H5S_ALL(); + /** Define user-level maximum number of dimensions */ public static final int H5S_MAX_RANK = H5S_MAX_RANK(); + /** Different types of dataspaces - error */ public static final int H5S_NO_CLASS = H5S_NO_CLASS(); + /** Different types of dataspaces - null dataspace */ public static final int H5S_NULL = H5S_NULL(); + /** Different types of dataspaces - scalar variable */ public static final int H5S_SCALAR = H5S_SCALAR(); + /** Enumerated type for the type of selection - Entire extent selected */ public static final int H5S_SEL_ALL = H5S_SEL_ALL(); + /** Enumerated type for the type of selection - Error */ public static final int H5S_SEL_ERROR = H5S_SEL_ERROR(); + /** Enumerated type for the type of selection - Hyperslab selected */ public static final int H5S_SEL_HYPERSLABS = H5S_SEL_HYPERSLABS(); + /** Enumerated type for the type of selection - LAST */ public static final int H5S_SEL_N = H5S_SEL_N(); + /** Enumerated type for the type of selection - Nothing selected */ public static final int H5S_SEL_NONE = H5S_SEL_NONE(); + /** Enumerated type for the type of selection - Points / elements selected */ public static final int H5S_SEL_POINTS = H5S_SEL_POINTS(); + /** Different ways of combining selections - Binary "and" operation for hyperslabs */ public static final int H5S_SELECT_AND = H5S_SELECT_AND(); + /** Different ways of combining selections - Append elements to end of point selection */ public static final int H5S_SELECT_APPEND = H5S_SELECT_APPEND(); + /** Different ways of combining selections - Invalid upper bound on selection operations */ public static final int H5S_SELECT_INVALID = H5S_SELECT_INVALID(); + /** Different ways of combining selections - error */ public static final int H5S_SELECT_NOOP = H5S_SELECT_NOOP(); + /** Different ways of combining selections - Binary "not" operation for hyperslabs */ public static final int H5S_SELECT_NOTA = H5S_SELECT_NOTA(); + /** Different ways of combining selections - Binary "not" operation for hyperslabs */ public static final int H5S_SELECT_NOTB = H5S_SELECT_NOTB(); + /** Different ways of combining selections - Binary "or" operation for hyperslabs */ public static final int H5S_SELECT_OR = H5S_SELECT_OR(); + /** Different ways of combining selections - Prepend elements to beginning of point selection */ public static final int H5S_SELECT_PREPEND = H5S_SELECT_PREPEND(); + /** Different ways of combining selections - Select "set" operation */ public static final int H5S_SELECT_SET = H5S_SELECT_SET(); + /** Different ways of combining selections - Binary "xor" operation for hyperslabs */ public static final int H5S_SELECT_XOR = H5S_SELECT_XOR(); + /** Different types of dataspaces - simple dataspace */ public static final int H5S_SIMPLE = H5S_SIMPLE(); + /** Define atomic datatypes */ public static final int H5S_UNLIMITED = H5S_UNLIMITED(); + + /** */ public static final long H5T_ALPHA_B16 = H5T_ALPHA_B16(); + /** */ public static final long H5T_ALPHA_B32 = H5T_ALPHA_B32(); + /** */ public static final long H5T_ALPHA_B64 = H5T_ALPHA_B64(); + /** */ public static final long H5T_ALPHA_B8 = H5T_ALPHA_B8(); + /** */ public static final long H5T_ALPHA_F32 = H5T_ALPHA_F32(); + /** */ public static final long H5T_ALPHA_F64 = H5T_ALPHA_F64(); + /** */ public static final long H5T_ALPHA_I16 = H5T_ALPHA_I16(); + /** */ public static final long H5T_ALPHA_I32 = H5T_ALPHA_I32(); + /** */ public static final long H5T_ALPHA_I64 = H5T_ALPHA_I64(); + /** */ public static final long H5T_ALPHA_I8 = H5T_ALPHA_I8(); + /** */ public static final long H5T_ALPHA_U16 = H5T_ALPHA_U16(); + /** */ public static final long H5T_ALPHA_U32 = H5T_ALPHA_U32(); + /** */ public static final long H5T_ALPHA_U64 = H5T_ALPHA_U64(); + /** */ public static final long H5T_ALPHA_U8 = H5T_ALPHA_U8(); + /** */ public static final int H5T_ARRAY = H5T_ARRAY(); + /** */ public static final int H5T_BITFIELD = H5T_BITFIELD(); + /** */ public static final int H5T_BKG_NO = H5T_BKG_NO(); + /** */ public static final int H5T_BKG_YES = H5T_BKG_YES(); + /** */ public static final long H5T_C_S1 = H5T_C_S1(); + /** */ public static final int H5T_COMPOUND = H5T_COMPOUND(); + /** */ public static final int H5T_CONV_CONV = H5T_CONV_CONV(); + /** */ public static final int H5T_CONV_FREE = H5T_CONV_FREE(); + /** */ public static final int H5T_CONV_INIT = H5T_CONV_INIT(); + /** */ public static final int H5T_CSET_ERROR = H5T_CSET_ERROR(); + /** */ public static final int H5T_CSET_ASCII = H5T_CSET_ASCII(); + /** */ public static final int H5T_CSET_UTF8 = H5T_CSET_UTF8(); + /** */ public static final int H5T_CSET_RESERVED_10 = H5T_CSET_RESERVED_10(); + /** */ public static final int H5T_CSET_RESERVED_11 = H5T_CSET_RESERVED_11(); + /** */ public static final int H5T_CSET_RESERVED_12 = H5T_CSET_RESERVED_12(); + /** */ public static final int H5T_CSET_RESERVED_13 = H5T_CSET_RESERVED_13(); + /** */ public static final int H5T_CSET_RESERVED_14 = H5T_CSET_RESERVED_14(); + /** */ public static final int H5T_CSET_RESERVED_15 = H5T_CSET_RESERVED_15(); + /** */ public static final int H5T_CSET_RESERVED_2 = H5T_CSET_RESERVED_2(); + /** */ public static final int H5T_CSET_RESERVED_3 = H5T_CSET_RESERVED_3(); + /** */ public static final int H5T_CSET_RESERVED_4 = H5T_CSET_RESERVED_4(); + /** */ public static final int H5T_CSET_RESERVED_5 = H5T_CSET_RESERVED_5(); + /** */ public static final int H5T_CSET_RESERVED_6 = H5T_CSET_RESERVED_6(); + /** */ public static final int H5T_CSET_RESERVED_7 = H5T_CSET_RESERVED_7(); + /** */ public static final int H5T_CSET_RESERVED_8 = H5T_CSET_RESERVED_8(); + /** */ public static final int H5T_CSET_RESERVED_9 = H5T_CSET_RESERVED_9(); + /** */ public static final int H5T_DIR_ASCEND = H5T_DIR_ASCEND(); + /** */ public static final int H5T_DIR_DEFAULT = H5T_DIR_DEFAULT(); + /** */ public static final int H5T_DIR_DESCEND = H5T_DIR_DESCEND(); + /** */ public static final int H5T_ENUM = H5T_ENUM(); + /** */ public static final int H5T_FLOAT = H5T_FLOAT(); + /** */ public static final long H5T_FORTRAN_S1 = H5T_FORTRAN_S1(); + /** */ public static final long H5T_IEEE_F32BE = H5T_IEEE_F32BE(); + /** */ public static final long H5T_IEEE_F32LE = H5T_IEEE_F32LE(); + /** */ public static final long H5T_IEEE_F64BE = H5T_IEEE_F64BE(); + /** */ public static final long H5T_IEEE_F64LE = H5T_IEEE_F64LE(); + /** */ public static final int H5T_INTEGER = H5T_INTEGER(); + /** */ public static final long H5T_INTEL_B16 = H5T_INTEL_B16(); + /** */ public static final long H5T_INTEL_B32 = H5T_INTEL_B32(); + /** */ public static final long H5T_INTEL_B64 = H5T_INTEL_B64(); + /** */ public static final long H5T_INTEL_B8 = H5T_INTEL_B8(); + /** */ public static final long H5T_INTEL_F32 = H5T_INTEL_F32(); + /** */ public static final long H5T_INTEL_F64 = H5T_INTEL_F64(); + /** */ public static final long H5T_INTEL_I16 = H5T_INTEL_I16(); + /** */ public static final long H5T_INTEL_I32 = H5T_INTEL_I32(); + /** */ public static final long H5T_INTEL_I64 = H5T_INTEL_I64(); + /** */ public static final long H5T_INTEL_I8 = H5T_INTEL_I8(); + /** */ public static final long H5T_INTEL_U16 = H5T_INTEL_U16(); + /** */ public static final long H5T_INTEL_U32 = H5T_INTEL_U32(); + /** */ public static final long H5T_INTEL_U64 = H5T_INTEL_U64(); + /** */ public static final long H5T_INTEL_U8 = H5T_INTEL_U8(); + /** */ public static final long H5T_MIPS_B16 = H5T_MIPS_B16(); + /** */ public static final long H5T_MIPS_B32 = H5T_MIPS_B32(); + /** */ public static final long H5T_MIPS_B64 = H5T_MIPS_B64(); + /** */ public static final long H5T_MIPS_B8 = H5T_MIPS_B8(); + /** */ public static final long H5T_MIPS_F32 = H5T_MIPS_F32(); + /** */ public static final long H5T_MIPS_F64 = H5T_MIPS_F64(); + /** */ public static final long H5T_MIPS_I16 = H5T_MIPS_I16(); + /** */ public static final long H5T_MIPS_I32 = H5T_MIPS_I32(); + /** */ public static final long H5T_MIPS_I64 = H5T_MIPS_I64(); + /** */ public static final long H5T_MIPS_I8 = H5T_MIPS_I8(); + /** */ public static final long H5T_MIPS_U16 = H5T_MIPS_U16(); + /** */ public static final long H5T_MIPS_U32 = H5T_MIPS_U32(); + /** */ public static final long H5T_MIPS_U64 = H5T_MIPS_U64(); + /** */ public static final long H5T_MIPS_U8 = H5T_MIPS_U8(); + /** */ public static final long H5T_NATIVE_B16 = H5T_NATIVE_B16(); + /** */ public static final long H5T_NATIVE_B32 = H5T_NATIVE_B32(); + /** */ public static final long H5T_NATIVE_B64 = H5T_NATIVE_B64(); + /** */ public static final long H5T_NATIVE_B8 = H5T_NATIVE_B8(); + /** */ public static final long H5T_NATIVE_CHAR = H5T_NATIVE_CHAR(); + /** */ public static final long H5T_NATIVE_DOUBLE = H5T_NATIVE_DOUBLE(); + /** */ public static final long H5T_NATIVE_FLOAT = H5T_NATIVE_FLOAT(); + /** */ public static final long H5T_NATIVE_HADDR = H5T_NATIVE_HADDR(); + /** */ public static final long H5T_NATIVE_HBOOL = H5T_NATIVE_HBOOL(); + /** */ public static final long H5T_NATIVE_HERR = H5T_NATIVE_HERR(); + /** */ public static final long H5T_NATIVE_HSIZE = H5T_NATIVE_HSIZE(); + /** */ public static final long H5T_NATIVE_HSSIZE = H5T_NATIVE_HSSIZE(); + /** */ public static final long H5T_NATIVE_INT = H5T_NATIVE_INT(); + /** */ public static final long H5T_NATIVE_INT_FAST16 = H5T_NATIVE_INT_FAST16(); + /** */ public static final long H5T_NATIVE_INT_FAST32 = H5T_NATIVE_INT_FAST32(); + /** */ public static final long H5T_NATIVE_INT_FAST64 = H5T_NATIVE_INT_FAST64(); + /** */ public static final long H5T_NATIVE_INT_FAST8 = H5T_NATIVE_INT_FAST8(); + /** */ public static final long H5T_NATIVE_INT_LEAST16 = H5T_NATIVE_INT_LEAST16(); + /** */ public static final long H5T_NATIVE_INT_LEAST32 = H5T_NATIVE_INT_LEAST32(); + /** */ public static final long H5T_NATIVE_INT_LEAST64 = H5T_NATIVE_INT_LEAST64(); + /** */ public static final long H5T_NATIVE_INT_LEAST8 = H5T_NATIVE_INT_LEAST8(); + /** */ public static final long H5T_NATIVE_INT16 = H5T_NATIVE_INT16(); + /** */ public static final long H5T_NATIVE_INT32 = H5T_NATIVE_INT32(); + /** */ public static final long H5T_NATIVE_INT64 = H5T_NATIVE_INT64(); + /** */ public static final long H5T_NATIVE_INT8 = H5T_NATIVE_INT8(); + /** */ public static final long H5T_NATIVE_LDOUBLE = H5T_NATIVE_LDOUBLE(); + /** */ public static final long H5T_NATIVE_LLONG = H5T_NATIVE_LLONG(); + /** */ public static final long H5T_NATIVE_LONG = H5T_NATIVE_LONG(); + /** */ public static final long H5T_NATIVE_OPAQUE = H5T_NATIVE_OPAQUE(); + /** */ public static final long H5T_NATIVE_SCHAR = H5T_NATIVE_SCHAR(); + /** */ public static final long H5T_NATIVE_SHORT = H5T_NATIVE_SHORT(); + /** */ public static final long H5T_NATIVE_UCHAR = H5T_NATIVE_UCHAR(); + /** */ public static final long H5T_NATIVE_UINT = H5T_NATIVE_UINT(); + /** */ public static final long H5T_NATIVE_UINT_FAST16 = H5T_NATIVE_UINT_FAST16(); + /** */ public static final long H5T_NATIVE_UINT_FAST32 = H5T_NATIVE_UINT_FAST32(); + /** */ public static final long H5T_NATIVE_UINT_FAST64 = H5T_NATIVE_UINT_FAST64(); + /** */ public static final long H5T_NATIVE_UINT_FAST8 = H5T_NATIVE_UINT_FAST8(); + /** */ public static final long H5T_NATIVE_UINT_LEAST16 = H5T_NATIVE_UINT_LEAST16(); + /** */ public static final long H5T_NATIVE_UINT_LEAST32 = H5T_NATIVE_UINT_LEAST32(); + /** */ public static final long H5T_NATIVE_UINT_LEAST64 = H5T_NATIVE_UINT_LEAST64(); + /** */ public static final long H5T_NATIVE_UINT_LEAST8 = H5T_NATIVE_UINT_LEAST8(); + /** */ public static final long H5T_NATIVE_UINT16 = H5T_NATIVE_UINT16(); + /** */ public static final long H5T_NATIVE_UINT32 = H5T_NATIVE_UINT32(); + /** */ public static final long H5T_NATIVE_UINT64 = H5T_NATIVE_UINT64(); + /** */ public static final long H5T_NATIVE_UINT8 = H5T_NATIVE_UINT8(); + /** */ public static final long H5T_NATIVE_ULLONG = H5T_NATIVE_ULLONG(); + /** */ public static final long H5T_NATIVE_ULONG = H5T_NATIVE_ULONG(); + /** */ public static final long H5T_NATIVE_USHORT = H5T_NATIVE_USHORT(); + /** */ public static final int H5T_NCLASSES = H5T_NCLASSES(); + /** */ public static final int H5T_NO_CLASS = H5T_NO_CLASS(); + /** */ public static final int H5T_NORM_ERROR = H5T_NORM_ERROR(); + /** */ public static final int H5T_NORM_IMPLIED = H5T_NORM_IMPLIED(); + /** */ public static final int H5T_NORM_MSBSET = H5T_NORM_MSBSET(); + /** */ public static final int H5T_NORM_NONE = H5T_NORM_NONE(); + /** */ public static final int H5T_NPAD = H5T_NPAD(); + /** */ public static final int H5T_NSGN = H5T_NSGN(); + /** */ public static final int H5T_OPAQUE = H5T_OPAQUE(); + /** */ public static final int H5T_OPAQUE_TAG_MAX = H5T_OPAQUE_TAG_MAX(); /* 1.6.5 */ + /** */ public static final int H5T_ORDER_BE = H5T_ORDER_BE(); + /** */ public static final int H5T_ORDER_ERROR = H5T_ORDER_ERROR(); + /** */ public static final int H5T_ORDER_LE = H5T_ORDER_LE(); + /** */ public static final int H5T_ORDER_NONE = H5T_ORDER_NONE(); + /** */ public static final int H5T_ORDER_VAX = H5T_ORDER_VAX(); + /** */ public static final int H5T_PAD_BACKGROUND = H5T_PAD_BACKGROUND(); + /** */ public static final int H5T_PAD_ERROR = H5T_PAD_ERROR(); + /** */ public static final int H5T_PAD_ONE = H5T_PAD_ONE(); + /** */ public static final int H5T_PAD_ZERO = H5T_PAD_ZERO(); + /** */ public static final int H5T_PERS_DONTCARE = H5T_PERS_DONTCARE(); + /** */ public static final int H5T_PERS_HARD = H5T_PERS_HARD(); + /** */ public static final int H5T_PERS_SOFT = H5T_PERS_SOFT(); + /** */ public static final int H5T_REFERENCE = H5T_REFERENCE(); + /** */ public static final int H5T_SGN_2 = H5T_SGN_2(); + /** */ public static final int H5T_SGN_ERROR = H5T_SGN_ERROR(); + /** */ public static final int H5T_SGN_NONE = H5T_SGN_NONE(); + /** */ public static final long H5T_STD_B16BE = H5T_STD_B16BE(); + /** */ public static final long H5T_STD_B16LE = H5T_STD_B16LE(); + /** */ public static final long H5T_STD_B32BE = H5T_STD_B32BE(); + /** */ public static final long H5T_STD_B32LE = H5T_STD_B32LE(); + /** */ public static final long H5T_STD_B64BE = H5T_STD_B64BE(); + /** */ public static final long H5T_STD_B64LE = H5T_STD_B64LE(); + /** */ public static final long H5T_STD_B8BE = H5T_STD_B8BE(); + /** */ public static final long H5T_STD_B8LE = H5T_STD_B8LE(); + /** */ public static final long H5T_STD_I16BE = H5T_STD_I16BE(); + /** */ public static final long H5T_STD_I16LE = H5T_STD_I16LE(); + /** */ public static final long H5T_STD_I32BE = H5T_STD_I32BE(); + /** */ public static final long H5T_STD_I32LE = H5T_STD_I32LE(); + /** */ public static final long H5T_STD_I64BE = H5T_STD_I64BE(); + /** */ public static final long H5T_STD_I64LE = H5T_STD_I64LE(); + /** */ public static final long H5T_STD_I8BE = H5T_STD_I8BE(); + /** */ public static final long H5T_STD_I8LE = H5T_STD_I8LE(); + /** */ public static final long H5T_STD_REF_DSETREG = H5T_STD_REF_DSETREG(); + /** */ public static final long H5T_STD_REF_OBJ = H5T_STD_REF_OBJ(); + /** */ public static final long H5T_STD_REF = H5T_STD_REF(); + /** */ public static final long H5T_STD_U16BE = H5T_STD_U16BE(); + /** */ public static final long H5T_STD_U16LE = H5T_STD_U16LE(); + /** */ public static final long H5T_STD_U32BE = H5T_STD_U32BE(); + /** */ public static final long H5T_STD_U32LE = H5T_STD_U32LE(); + /** */ public static final long H5T_STD_U64BE = H5T_STD_U64BE(); + /** */ public static final long H5T_STD_U64LE = H5T_STD_U64LE(); + /** */ public static final long H5T_STD_U8BE = H5T_STD_U8BE(); + /** */ public static final long H5T_STD_U8LE = H5T_STD_U8LE(); + /** */ public static final int H5T_STR_ERROR = H5T_STR_ERROR(); + /** */ public static final int H5T_STR_NULLPAD = H5T_STR_NULLPAD(); + /** */ public static final int H5T_STR_NULLTERM = H5T_STR_NULLTERM(); + /** */ public static final int H5T_STR_RESERVED_10 = H5T_STR_RESERVED_10(); + /** */ public static final int H5T_STR_RESERVED_11 = H5T_STR_RESERVED_11(); + /** */ public static final int H5T_STR_RESERVED_12 = H5T_STR_RESERVED_12(); + /** */ public static final int H5T_STR_RESERVED_13 = H5T_STR_RESERVED_13(); + /** */ public static final int H5T_STR_RESERVED_14 = H5T_STR_RESERVED_14(); + /** */ public static final int H5T_STR_RESERVED_15 = H5T_STR_RESERVED_15(); + /** */ public static final int H5T_STR_RESERVED_3 = H5T_STR_RESERVED_3(); + /** */ public static final int H5T_STR_RESERVED_4 = H5T_STR_RESERVED_4(); + /** */ public static final int H5T_STR_RESERVED_5 = H5T_STR_RESERVED_5(); + /** */ public static final int H5T_STR_RESERVED_6 = H5T_STR_RESERVED_6(); + /** */ public static final int H5T_STR_RESERVED_7 = H5T_STR_RESERVED_7(); + /** */ public static final int H5T_STR_RESERVED_8 = H5T_STR_RESERVED_8(); + /** */ public static final int H5T_STR_RESERVED_9 = H5T_STR_RESERVED_9(); + /** */ public static final int H5T_STR_SPACEPAD = H5T_STR_SPACEPAD(); + /** */ public static final int H5T_STRING = H5T_STRING(); + /** */ public static final int H5T_TIME = H5T_TIME(); + /** */ public static final long H5T_UNIX_D32BE = H5T_UNIX_D32BE(); + /** */ public static final long H5T_UNIX_D32LE = H5T_UNIX_D32LE(); + /** */ public static final long H5T_UNIX_D64BE = H5T_UNIX_D64BE(); + /** */ public static final long H5T_UNIX_D64LE = H5T_UNIX_D64LE(); + /** */ public static final long H5T_VARIABLE = H5T_VARIABLE(); + /** */ public static final int H5T_VLEN = H5T_VLEN(); + /** */ public static final int H5T_VL_T = H5T_VL_T(); + /** */ public static final int H5VL_CAP_FLAG_NONE = H5VL_CAP_FLAG_NONE(); + /** */ public static final int H5VL_CAP_FLAG_THREADSAFE = H5VL_CAP_FLAG_THREADSAFE(); + /** */ public static final long H5VL_NATIVE = H5VL_NATIVE(); + /** */ public static final String H5VL_NATIVE_NAME = H5VL_NATIVE_NAME(); + /** */ public static final int H5VL_NATIVE_VALUE = H5VL_NATIVE_VALUE(); + /** */ public static final int H5VL_NATIVE_VERSION = H5VL_NATIVE_VERSION(); + /** */ public static final int H5_VOL_INVALID = H5_VOL_INVALID(); + /** */ public static final int H5_VOL_NATIVE = H5_VOL_NATIVE(); + /** */ public static final int H5_VOL_RESERVED = H5_VOL_RESERVED(); + /** */ public static final int H5_VOL_MAX = H5_VOL_MAX(); + /** Return values for filter callback function */ public static final int H5Z_CB_CONT = H5Z_CB_CONT(); + /** Return values for filter callback function */ public static final int H5Z_CB_ERROR = H5Z_CB_ERROR(); + /** Return values for filter callback function */ public static final int H5Z_CB_FAIL = H5Z_CB_FAIL(); + /** Return values for filter callback function */ public static final int H5Z_CB_NO = H5Z_CB_NO(); + /** Values to decide if EDC is enabled for reading data */ public static final int H5Z_DISABLE_EDC = H5Z_DISABLE_EDC(); + /** Values to decide if EDC is enabled for reading data */ public static final int H5Z_ENABLE_EDC = H5Z_ENABLE_EDC(); + /** Values to decide if EDC is enabled for reading data */ public static final int H5Z_ERROR_EDC = H5Z_ERROR_EDC(); + /** Filter IDs - deflation like gzip */ public static final int H5Z_FILTER_DEFLATE = H5Z_FILTER_DEFLATE(); + /** Filter IDs - no filter */ public static final int H5Z_FILTER_ERROR = H5Z_FILTER_ERROR(); + /** Filter IDs - fletcher32 checksum of EDC */ public static final int H5Z_FILTER_FLETCHER32 = H5Z_FILTER_FLETCHER32(); + /** Filter IDs - maximum filter id */ public static final int H5Z_FILTER_MAX = H5Z_FILTER_MAX(); + /** Filter IDs - nbit compression */ public static final int H5Z_FILTER_NBIT = H5Z_FILTER_NBIT(); + /** Filter IDs - reserved indefinitely */ public static final int H5Z_FILTER_NONE = H5Z_FILTER_NONE(); + /** Filter IDs - filter ids below this value are reserved for library use */ public static final int H5Z_FILTER_RESERVED = H5Z_FILTER_RESERVED(); + /** Filter IDs - scale+offset compression */ public static final int H5Z_FILTER_SCALEOFFSET = H5Z_FILTER_SCALEOFFSET(); + /** Filter IDs - shuffle the data */ public static final int H5Z_FILTER_SHUFFLE = H5Z_FILTER_SHUFFLE(); + /** Filter IDs - szip compression */ public static final int H5Z_FILTER_SZIP = H5Z_FILTER_SZIP(); + /** Flags for filter definition (stored) + * definition flag mask */ public static final int H5Z_FLAG_DEFMASK = H5Z_FLAG_DEFMASK(); + /** Additional flags for filter invocation (not stored) + * invocation flag mask */ public static final int H5Z_FLAG_INVMASK = H5Z_FLAG_INVMASK(); + /** Flags for filter definition (stored) + * filter is mandatory */ public static final int H5Z_FLAG_MANDATORY = H5Z_FLAG_MANDATORY(); + /** Flags for filter definition (stored) + * filter is optional */ public static final int H5Z_FLAG_OPTIONAL = H5Z_FLAG_OPTIONAL(); + /** Additional flags for filter invocation (not stored) + * reverse direction; read */ public static final int H5Z_FLAG_REVERSE = H5Z_FLAG_REVERSE(); + /** Additional flags for filter invocation (not stored) + * skip EDC filters for read */ public static final int H5Z_FLAG_SKIP_EDC = H5Z_FLAG_SKIP_EDC(); + /** Symbol to remove all filters in H5Premove_filter */ + public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL(); + /** Maximum number of filters allowed in a pipeline */ public static final int H5Z_MAX_NFILTERS = H5Z_MAX_NFILTERS(); + /** Values to decide if EDC is enabled for reading data */ public static final int H5Z_NO_EDC = H5Z_NO_EDC(); + /** Bit flags for H5Zget_filter_info */ public static final int H5Z_FILTER_CONFIG_ENCODE_ENABLED = H5Z_FILTER_CONFIG_ENCODE_ENABLED(); + /** Bit flags for H5Zget_filter_info */ public static final int H5Z_FILTER_CONFIG_DECODE_ENABLED = H5Z_FILTER_CONFIG_DECODE_ENABLED(); + /** Special parameters for ScaleOffset filter*/ public static final int H5Z_SO_INT_MINBITS_DEFAULT = H5Z_SO_INT_MINBITS_DEFAULT(); + /** Special parameters for ScaleOffset filter*/ public static final int H5Z_SO_FLOAT_DSCALE = H5Z_SO_FLOAT_DSCALE(); + /** Special parameters for ScaleOffset filter*/ public static final int H5Z_SO_FLOAT_ESCALE = H5Z_SO_FLOAT_ESCALE(); + /** Special parameters for ScaleOffset filter*/ public static final int H5Z_SO_INT = H5Z_SO_INT(); + /** shuffle filter - Number of parameters that users can set */ public static final int H5Z_SHUFFLE_USER_NPARMS = H5Z_SHUFFLE_USER_NPARMS(); + /** shuffle filter - Total number of parameters for filter */ public static final int H5Z_SHUFFLE_TOTAL_NPARMS = H5Z_SHUFFLE_TOTAL_NPARMS(); + /** szip filter - Number of parameters that users can set */ public static final int H5Z_SZIP_USER_NPARMS = H5Z_SZIP_USER_NPARMS(); + /** szip filter - Total number of parameters for filter */ public static final int H5Z_SZIP_TOTAL_NPARMS = H5Z_SZIP_TOTAL_NPARMS(); + /** szip filter - "User" parameter for option mask */ public static final int H5Z_SZIP_PARM_MASK = H5Z_SZIP_PARM_MASK(); + /** szip filter - "User" parameter for pixels-per-block */ public static final int H5Z_SZIP_PARM_PPB = H5Z_SZIP_PARM_PPB(); + /** szip filter - "Local" parameter for bits-per-pixel */ public static final int H5Z_SZIP_PARM_BPP = H5Z_SZIP_PARM_BPP(); + /** szip filter - "Local" parameter for pixels-per-scanline */ public static final int H5Z_SZIP_PARM_PPS = H5Z_SZIP_PARM_PPS(); + /** nbit filter - Number of parameters that users can set */ public static final int H5Z_NBIT_USER_NPARMS = H5Z_NBIT_USER_NPARMS(); + /** scale offset filter - Number of parameters that users can set */ public static final int H5Z_SCALEOFFSET_USER_NPARMS = H5Z_SCALEOFFSET_USER_NPARMS(); - public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL(); // ///////////////////////////////////////////////////////////////////////// // List of private native variables to get constant values from C // @@ -831,16 +1618,18 @@ public class HDF5Constants { private static native final long H5E_ARGS(); - private static native final long H5E_ATOM(); + private static native final long H5E_ID(); private static native final long H5E_ATTR(); - private static native final long H5E_BADATOM(); + private static native final long H5E_BADID(); private static native final long H5E_BADFILE(); private static native final long H5E_BADGROUP(); + private static native final long H5E_BADITER(); + private static native final long H5E_BADMESG(); private static native final long H5E_BADRANGE(); @@ -861,15 +1650,30 @@ public class HDF5Constants { private static native final long H5E_CANAPPLY(); - // private static native final long H5E_CANTALLOC(); + private static native final long H5E_CANTALLOC(); + + private static native final long H5E_CANTAPPEND(); + + private static native final long H5E_CANTATTACH(); + + private static native final long H5E_CANTCLEAN(); + private static native final long H5E_CANTCLIP(); private static native final long H5E_CANTCLOSEFILE(); + private static native final long H5E_CANTCLOSEOBJ(); + + private static native final long H5E_CANTCOMPARE(); + + private static native final long H5E_CANTCOMPUTE(); + private static native final long H5E_CANTCONVERT(); private static native final long H5E_CANTCOPY(); + private static native final long H5E_CANTCORK(); + private static native final long H5E_CANTCOUNT(); private static native final long H5E_CANTCREATE(); @@ -882,18 +1686,36 @@ public class HDF5Constants { private static native final long H5E_CANTDELETEFILE(); + private static native final long H5E_CANTDEPEND(); + + private static native final long H5E_CANTDIRTY(); + private static native final long H5E_CANTENCODE(); + private static native final long H5E_CANTEXPUNGE(); + + private static native final long H5E_CANTEXTEND(); + + private static native final long H5E_CANTFILTER(); + private static native final long H5E_CANTFLUSH(); private static native final long H5E_CANTFREE(); + private static native final long H5E_CANTGATHER(); + + private static native final long H5E_CANTGC(); + private static native final long H5E_CANTGET(); + private static native final long H5E_CANTGETSIZE(); + private static native final long H5E_CANTINC(); private static native final long H5E_CANTINIT(); + private static native final long H5E_CANTINS(); + private static native final long H5E_CANTINSERT(); private static native final long H5E_CANTLIST(); @@ -902,29 +1724,96 @@ public class HDF5Constants { private static native final long H5E_CANTLOCK(); + private static native final long H5E_CANTLOCKFILE(); + + private static native final long H5E_CANTMARKCLEAN(); + + private static native final long H5E_CANTMARKDIRTY(); + + private static native final long H5E_CANTMARKSERIALIZED(); + + private static native final long H5E_CANTMARKUNSERIALIZED(); + + private static native final long H5E_CANTMERGE(); + + private static native final long H5E_CANTMOVE(); + + private static native final long H5E_CANTMODIFY(); + private static native final long H5E_CANTNEXT(); + private static native final long H5E_CANTNOTIFY(); + private static native final long H5E_CANTOPENFILE(); private static native final long H5E_CANTOPENOBJ(); - // private static native final long H5E_CANTRECV(); + private static native final long H5E_CANTOPERATE(); + + private static native final long H5E_CANTPACK(); + + private static native final long H5E_CANTPIN(); + + private static native final long H5E_CANTPROTECT(); + + private static native final long H5E_CANTRECV(); + + private static native final long H5E_CANTREDISTRIBUTE(); + private static native final long H5E_CANTREGISTER(); private static native final long H5E_CANTRELEASE(); + private static native final long H5E_CANTREMOVE(); + + private static native final long H5E_CANTRENAME(); + + private static native final long H5E_CANTRESET(); + + private static native final long H5E_CANTRESIZE(); + + private static native final long H5E_CANTRESTORE(); + + private static native final long H5E_CANTREVIVE(); + + private static native final long H5E_CANTSHRINK(); + private static native final long H5E_CANTSELECT(); private static native final long H5E_CANTSET(); + private static native final long H5E_CANTSERIALIZE(); + + private static native final long H5E_CANTSORT(); + private static native final long H5E_CANTSPLIT(); + private static native final long H5E_CANTSWAP(); + + private static native final long H5E_CANTTAG(); + + private static native final long H5E_CANTUNCORK(); + + private static native final long H5E_CANTUNDEPEND(); + private static native final long H5E_CANTUNLOCK(); + private static native final long H5E_CANTUNLOCKFILE(); + + private static native final long H5E_CANTUNPIN(); + + private static native final long H5E_CANTUNPROTECT(); + + private static native final long H5E_CANTUNSERIALIZE(); + + private static native final long H5E_CANTUPDATE(); + private static native final long H5E_CLOSEERROR(); private static native final long H5E_COMPLEN(); + private static native final long H5E_CONTEXT(); + private static native final long H5E_DATASET(); private static native final long H5E_DATASPACE(); @@ -935,10 +1824,16 @@ public class HDF5Constants { private static native final long H5E_DUPCLASS(); + private static native final long H5E_EARRAY(); + private static native final long H5E_EFL(); + private static native final long H5E_ERROR(); + private static native final long H5E_EXISTS(); + private static native final long H5E_FARRAY(); + private static native final long H5E_FCNTL(); private static native final long H5E_FILE(); @@ -947,10 +1842,14 @@ public class HDF5Constants { private static native final long H5E_FILEOPEN(); + private static native final long H5E_FSPACE(); + private static native final long H5E_FUNC(); private static native final long H5E_HEAP(); + private static native final long H5E_INCONSISTENTSTATE(); + private static native final long H5E_INTERNAL(); private static native final long H5E_IO(); @@ -959,8 +1858,12 @@ public class HDF5Constants { private static native final long H5E_LINKCOUNT(); + private static native final long H5E_LOGGING(); + private static native final int H5E_MAJOR(); + private static native final long H5E_MAP(); + private static native final int H5E_MINOR(); private static native final long H5E_MOUNT(); @@ -969,6 +1872,12 @@ public class HDF5Constants { private static native final long H5E_MPIERRSTR(); + private static native final long H5E_NLINKS(); + + private static native final long H5E_NO_INDEPENDENT(); + + private static native final long H5E_NOENCODER(); + private static native final long H5E_NOFILTER(); private static native final long H5E_NOIDS(); @@ -985,14 +1894,26 @@ public class HDF5Constants { private static native final long H5E_NOTHDF5(); + private static native final long H5E_NOTREGISTERED(); + + private static native final long H5E_OBJOPEN(); + private static native final long H5E_OHDR(); + private static native final long H5E_OPENERROR(); + private static native final long H5E_OVERFLOW(); + private static native final long H5E_PAGEBUF(); + + private static native final long H5E_PATH(); + private static native final long H5E_PLINE(); private static native final long H5E_PLIST(); + private static native final long H5E_PLUGIN(); + private static native final long H5E_PROTECT(); private static native final long H5E_READERROR(); @@ -1005,12 +1926,24 @@ public class HDF5Constants { private static native final long H5E_SEEKERROR(); + private static native final long H5E_SETDISALLOWED(); + private static native final long H5E_SETLOCAL(); + private static native final long H5E_SLIST(); + + private static native final long H5E_SOHM(); + private static native final long H5E_STORAGE(); private static native final long H5E_SYM(); + private static native final long H5E_SYSERRSTR(); + + private static native final long H5E_SYSTEM(); + + private static native final long H5E_TRAVERSE(); + private static native final long H5E_TRUNCATED(); private static native final long H5E_TST(); @@ -1037,8 +1970,6 @@ public class HDF5Constants { private static native final int H5ES_STATUS_FAIL(); - private static native final int H5ES_STATUS_CANCELED(); - private static native final int H5F_ACC_CREAT(); private static native final int H5F_ACC_EXCL(); diff --git a/java/src/hdf/hdf5lib/HDF5GroupInfo.java b/java/src/hdf/hdf5lib/HDF5GroupInfo.java index 44b41bb..4c31af7 100644 --- a/java/src/hdf/hdf5lib/HDF5GroupInfo.java +++ b/java/src/hdf/hdf5lib/HDF5GroupInfo.java @@ -41,6 +41,8 @@ public class HDF5GroupInfo { long mtime; int linklen; + /** Container for the information reported about an HDF5 Object + * from the H5Gget_obj_info() method */ public HDF5GroupInfo() { fileno = new long[2]; objno = new long[2]; @@ -88,27 +90,44 @@ public class HDF5GroupInfo { linklen = 0; } - /* accessors */ + /** fileno accessors + * @return the file number if successful + */ public long[] getFileno() { return fileno; } + /** accessors + * @return the object number if successful + */ public long[] getObjno() { return objno; } + /** accessors + * @return type of group if successful + */ public int getType() { return type; } + /** accessors + * @return the number of links in the group if successful + */ public int getNlink() { return nlink; } + /** accessors + * @return the modified time value if successful + */ public long getMtime() { return mtime; } + /** accessors + * @return a length of link name if successful + */ public int getLinklen() { return linklen; } diff --git a/java/src/hdf/hdf5lib/HDFArray.java b/java/src/hdf/hdf5lib/HDFArray.java index 0c2cd73..bb9357e 100644 --- a/java/src/hdf/hdf5lib/HDFArray.java +++ b/java/src/hdf/hdf5lib/HDFArray.java @@ -11,28 +11,25 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - package hdf.hdf5lib; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5JavaException; +import java.util.Arrays; /** * This is a class for handling multidimensional arrays for HDF. * <p> - * The purpose is to allow the storage and retrieval of arbitrary array types - * containing scientific data. + * The purpose is to allow the storage and retrieval of arbitrary array types containing scientific data. * <p> - * The methods support the conversion of an array to and from Java to a - * one-dimensional array of bytes suitable for I/O by the C library. + * The methods support the conversion of an array to and from Java to a one-dimensional array of bytes suitable for I/O + * by the C library. * <p> - * This class heavily uses the <a - * href="./hdf.hdf5lib.HDFNativeData.html">HDFNativeData</a> class to - * convert between Java and C representations. + * This class heavily uses the <a href="./hdf.hdf5lib.HDFNativeData.html">HDFNativeData</a> class to convert between + * Java and C representations. */ public class HDFArray { - private Object _theArray = null; private ArrayDescriptor _desc = null; private byte[] _barray = null; @@ -40,31 +37,27 @@ public class HDFArray { // public HDFArray() {} /** - * The input must be a Java Array (possibly multidimensional) of primitive - * numbers or sub-classes of Number. + * The input must be a Java Array (possibly multidimensional) of primitive numbers or sub-classes of Number. * <p> - * The input is analysed to determine the number of dimensions and size of - * each dimension, as well as the type of the elements. + * The input is analysed to determine the number of dimensions and size of each dimension, as well as the type of + * the elements. * <p> * The description is saved in private variables, and used to convert data. * * @param anArray - * The array object. - * + * The array object. * @exception hdf.hdf5lib.exceptions.HDF5Exception - * object is not an array. + * object is not an array. */ - public HDFArray(Object anArray) throws HDF5Exception { - + public HDFArray(Object anArray) throws HDF5Exception + { if (anArray == null) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: array is null?: "); + HDF5JavaException ex = new HDF5JavaException("HDFArray: array is null?: "); } Class tc = anArray.getClass(); if (tc.isArray() == false) { /* exception: not an array */ - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: not an array?: "); + HDF5JavaException ex = new HDF5JavaException("HDFArray: not an array?: "); throw (ex); } _theArray = anArray; @@ -72,8 +65,7 @@ public class HDFArray { /* extra error checking -- probably not needed */ if (_desc == null) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: internal error: array description failed?: "); + HDF5JavaException ex = new HDF5JavaException("HDFArray: internal error: array description failed?: "); throw (ex); } } @@ -81,49 +73,48 @@ public class HDFArray { /** * Allocate a one-dimensional array of bytes sufficient to store the array. * - * @return A one-D array of bytes, filled with zeroes. The bytes are - * sufficient to hold the data of the Array passed to the - * constructor. + * @return A one-D array of bytes, filled with zeroes. The bytes are sufficient to hold the data of the Array passed + * to the constructor. * @exception hdf.hdf5lib.exceptions.HDF5JavaException - * Allocation failed. + * Allocation failed. */ - public byte[] emptyBytes() throws HDF5JavaException { + public byte[] emptyBytes() + throws HDF5JavaException + { byte[] b = null; - if ((ArrayDescriptor.dims == 1) && (ArrayDescriptor.NT == 'B')) { + if ((ArrayDescriptor.dims == 1) + && (ArrayDescriptor.NT == 'B')) { b = (byte[]) _theArray; } else { b = new byte[ArrayDescriptor.totalSize]; } if (b == null) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: emptyBytes: allocation failed"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: emptyBytes: allocation failed"); throw (ex); } return (b); } /** - * Given a Java array of numbers, convert it to a one-dimensional array of - * bytes in correct native order. + * Given a Java array of numbers, convert it to a one-dimensional array of bytes in correct native order. * - * @return A one-D array of bytes, constructed from the Array passed to the - * constructor. + * @return A one-D array of bytes, constructed from the Array passed to the constructor. * @exception hdf.hdf5lib.exceptions.HDF5JavaException - * the object not an array or other internal error. + * the object not an array or other internal error. */ - public byte[] byteify() throws HDF5JavaException { - + public byte[] byteify() + throws HDF5JavaException + { if (_barray != null) { return _barray; } if (_theArray == null) { /* exception: not an array */ - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify not an array?: "); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify not an array?: "); throw (ex); } @@ -140,73 +131,53 @@ public class HDFArray { byte[] therow; if (ArrayDescriptor.NT == 'I') { - therow = HDFNativeData.intToByte(0, - ArrayDescriptor.dimlen[1], (int[]) _theArray); + therow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[1], (int[]) _theArray); } else if (ArrayDescriptor.NT == 'S') { - therow = HDFNativeData.shortToByte(0, - ArrayDescriptor.dimlen[1], (short[]) _theArray); + therow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[1], (short[]) _theArray); } else if (ArrayDescriptor.NT == 'F') { - therow = HDFNativeData.floatToByte(0, - ArrayDescriptor.dimlen[1], (float[]) _theArray); + therow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[1], (float[]) _theArray); } else if (ArrayDescriptor.NT == 'J') { - therow = HDFNativeData.longToByte(0, - ArrayDescriptor.dimlen[1], (long[]) _theArray); + therow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[1], (long[]) _theArray); } else if (ArrayDescriptor.NT == 'D') { - therow = HDFNativeData - .doubleToByte(0, ArrayDescriptor.dimlen[1], - (double[]) _theArray); + therow = HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[1], (double[]) _theArray); } else if (ArrayDescriptor.NT == 'L') { if (ArrayDescriptor.className.equals("java.lang.Byte")) { therow = ByteObjToByte((Byte[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Integer")) { + else if (ArrayDescriptor.className.equals("java.lang.Integer")) { therow = IntegerToByte((Integer[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Short")) { + else if (ArrayDescriptor.className.equals("java.lang.Short")) { therow = ShortToByte((Short[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Float")) { + else if (ArrayDescriptor.className.equals("java.lang.Float")) { therow = FloatObjToByte((Float[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Double")) { + else if (ArrayDescriptor.className.equals("java.lang.Double")) { therow = DoubleObjToByte((Double[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Long")) { + else if (ArrayDescriptor.className.equals("java.lang.Long")) { therow = LongObjToByte((Long[]) _theArray); } else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: unknown type of Object?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown type of Object?"); throw (ex); } } else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: unknown type of data?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown type of data?"); throw (ex); } - System - .arraycopy( - therow, - 0, - _barray, - 0, - (ArrayDescriptor.dimlen[1] * ArrayDescriptor.NTsize)); + System.arraycopy(therow, 0, _barray, 0, (ArrayDescriptor.dimlen[1] * ArrayDescriptor.NTsize)); return _barray; } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?"); throw (ex); } } @@ -216,8 +187,7 @@ public class HDFArray { _barray = new byte[ArrayDescriptor.totalSize]; } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?"); throw (ex); } @@ -240,8 +210,7 @@ public class HDFArray { else { /* check range of index */ if (index > (ArrayDescriptor.dimlen[i] - 1)) { - throw new java.lang.IndexOutOfBoundsException( - "HDFArray: byteify index OOB?"); + throw new java.lang.IndexOutOfBoundsException("HDFArray: byteify index OOB?"); } oo = java.lang.reflect.Array.get(oo, index); ArrayDescriptor.currentindex[i] = index; @@ -253,242 +222,187 @@ public class HDFArray { byte arow[]; try { if (ArrayDescriptor.NT == 'J') { - arow = HDFNativeData - .longToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); - arow = HDFNativeData - .longToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'I') { - arow = HDFNativeData - .intToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (int[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (int[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'S') { - arow = HDFNativeData - .shortToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'B') { arow = (byte[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]; } else if (ArrayDescriptor.NT == 'F') { /* 32 bit float */ - arow = HDFNativeData - .floatToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'D') { /* 64 bit float */ - arow = HDFNativeData - .doubleToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'L') { if (ArrayDescriptor.className.equals("java.lang.Byte")) { arow = ByteObjToByte((Byte[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } - else if (ArrayDescriptor.className - .equals("java.lang.Integer")) { + else if (ArrayDescriptor.className.equals("java.lang.Integer")) { arow = IntegerToByte((Integer[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } - else if (ArrayDescriptor.className - .equals("java.lang.Short")) { + else if (ArrayDescriptor.className.equals("java.lang.Short")) { arow = ShortToByte((Short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } - else if (ArrayDescriptor.className - .equals("java.lang.Float")) { + else if (ArrayDescriptor.className.equals("java.lang.Float")) { arow = FloatObjToByte((Float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } - else if (ArrayDescriptor.className - .equals("java.lang.Double")) { + else if (ArrayDescriptor.className.equals("java.lang.Double")) { arow = DoubleObjToByte((Double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.className.equals("java.lang.Long")) { arow = LongObjToByte((Long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify Object type not implemented?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify Object type not implemented?"); throw (ex); } } else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify unknown type not implemented?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify unknown type not implemented?"); throw (ex); } - System - .arraycopy( - arow, - 0, - _barray, - n, - (ArrayDescriptor.dimlen[ArrayDescriptor.dims] * ArrayDescriptor.NTsize)); + System.arraycopy(arow, 0, _barray, n, + (ArrayDescriptor.dimlen[ArrayDescriptor.dims] * ArrayDescriptor.NTsize)); n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?"); throw (ex); } } /* assert: the whole array is completed--currentindex should == len - 1 */ - /* error checks */ - if (n < ArrayDescriptor.totalSize) { - throw new java.lang.InternalError(new String( - "HDFArray::byteify: Panic didn't complete all input data: n= " - + n + " size = " + ArrayDescriptor.totalSize)); + throw new java.lang.InternalError(new String("HDFArray::byteify: Panic didn't complete all input data: n= " + + n + " size = " + ArrayDescriptor.totalSize)); } for (i = 0; i < ArrayDescriptor.dims; i++) { if (ArrayDescriptor.currentindex[i] != ArrayDescriptor.dimlen[i] - 1) { throw new java.lang.InternalError(new String( - "Panic didn't complete all data: currentindex[" + i - + "] = " + ArrayDescriptor.currentindex[i] - + " (should be " - + (ArrayDescriptor.dimlen[i] - 1) + " ?)")); + "Panic didn't complete all data: currentindex[" + i + "] = " + ArrayDescriptor.currentindex[i] + + " (should be " + (ArrayDescriptor.dimlen[i] - 1) + " ?)")); } } return _barray; } /** - * Given a one-dimensional array of bytes representing numbers, convert it - * to a java array of the shape and size passed to the constructor. + * Given a one-dimensional array of bytes representing numbers, convert it to a java array of the shape and size + * passed to the constructor. * * @param bytes - * The bytes to construct the Array. - * @return An Array (possibly multidimensional) of primitive or number - * objects. - * @exception hdf.hdf5lib.exceptions.HDF5JavaException - * the object not an array or other internal error. + * The bytes to construct the Array. + * @return + * An Array (possibly multidimensional) of primitive or number objects. + * @exception + * hdf.hdf5lib.exceptions.HDF5JavaException the object not an array or other internal error. */ - public Object arrayify(byte[] bytes) throws HDF5JavaException { - + public Object arrayify(byte[] bytes) throws HDF5JavaException + { if (_theArray == null) { /* exception: not an array */ - HDF5JavaException ex = new HDF5JavaException( - "arrayify: not an array?: "); + HDF5JavaException ex = new HDF5JavaException("arrayify: not an array?: "); throw (ex); } if (java.lang.reflect.Array.getLength(bytes) != ArrayDescriptor.totalSize) { /* exception: array not right size */ - HDF5JavaException ex = new HDF5JavaException( - "arrayify: array is wrong size?: "); + HDF5JavaException ex = new HDF5JavaException("arrayify: array is wrong size?: "); throw (ex); } _barray = bytes; /* hope that the bytes are correct.... */ + if (ArrayDescriptor.dims == 1) { /* special case */ /* 2 data copies here! */ try { if (ArrayDescriptor.NT == 'I') { int[] x = HDFNativeData.byteToInt(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'S') { short[] x = HDFNativeData.byteToShort(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'F') { float x[] = HDFNativeData.byteToFloat(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'J') { long x[] = HDFNativeData.byteToLong(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'D') { double x[] = HDFNativeData.byteToDouble(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'B') { - System.arraycopy(_barray, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(_barray, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'L') { if (ArrayDescriptor.className.equals("java.lang.Byte")) { Byte I[] = ByteToByteObj(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } - else if (ArrayDescriptor.className - .equals("java.lang.Integer")) { + else if (ArrayDescriptor.className.equals("java.lang.Integer")) { Integer I[] = ByteToInteger(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } - else if (ArrayDescriptor.className - .equals("java.lang.Short")) { + else if (ArrayDescriptor.className.equals("java.lang.Short")) { Short I[] = ByteToShort(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } - else if (ArrayDescriptor.className - .equals("java.lang.Float")) { + else if (ArrayDescriptor.className.equals("java.lang.Float")) { Float I[] = ByteToFloatObj(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } - else if (ArrayDescriptor.className - .equals("java.lang.Double")) { + else if (ArrayDescriptor.className.equals("java.lang.Double")) { Double I[] = ByteToDoubleObj(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.className.equals("java.lang.Long")) { Long I[] = ByteToLongObj(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else { - HDF5JavaException ex = new HDF5JavaException( - "arrayify: Object type not implemented yet..."); + HDF5JavaException ex = new HDF5JavaException("arrayify: Object type not implemented yet..."); throw (ex); } } else { - HDF5JavaException ex = new HDF5JavaException( - "arrayify: unknown type not implemented yet..."); + HDF5JavaException ex = new HDF5JavaException("arrayify: unknown type not implemented yet..."); throw (ex); } } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: arrayify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: arrayify array too big?"); throw (ex); } } @@ -496,8 +410,54 @@ public class HDFArray { Object oo = _theArray; int n = 0; /* the current byte */ + int m = 0; /* the current array index */ int index = 0; int i; + Object flattenedArray = null; + + switch (ArrayDescriptor.NT) { + case 'J': + flattenedArray = (Object) HDFNativeData.byteToLong(_barray); + break; + case 'S': + flattenedArray = (Object) HDFNativeData.byteToShort(_barray); + break; + case 'I': + flattenedArray = (Object) HDFNativeData.byteToInt(_barray); + break; + case 'F': + flattenedArray = (Object) HDFNativeData.byteToFloat(_barray); + break; + case 'D': + flattenedArray = (Object) HDFNativeData.byteToDouble(_barray); + break; + case 'B': + flattenedArray = (Object) _barray; + break; + case 'L': + { + if (ArrayDescriptor.className.equals("java.lang.Byte")) + flattenedArray = (Object) ByteToByteObj(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Short")) + flattenedArray = (Object) ByteToShort(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Integer")) + flattenedArray = (Object) ByteToInteger(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Long")) + flattenedArray = (Object) ByteToLongObj(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Float")) + flattenedArray = (Object) ByteToFloatObj(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Double")) + flattenedArray = (Object) ByteToDoubleObj(_barray); + else { + HDF5JavaException ex = new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT); + throw (ex); + } + } // end of statement for arrays of boxed objects + default: + HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown or unsupported type: " + ArrayDescriptor.NT); + throw (ex); + } // end of switch statement for arrays of primitives + while (n < ArrayDescriptor.totalSize) { oo = ArrayDescriptor.objs[0]; index = n / ArrayDescriptor.bytetoindex[0]; @@ -524,222 +484,86 @@ public class HDFArray { /* array-ify */ try { - if (ArrayDescriptor.NT == 'J') { - long[] arow = HDFNativeData.byteToLong(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'I') { - int[] arow = HDFNativeData.byteToInt(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'S') { - short[] arow = HDFNativeData.byteToShort(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'B') { - System.arraycopy(_barray, n, - ArrayDescriptor.objs[ArrayDescriptor.dims - 1], 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims]); - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - } - else if (ArrayDescriptor.NT == 'F') { - float arow[] = HDFNativeData.byteToFloat(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'D') { - double[] arow = HDFNativeData.byteToDouble(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'L') { - if (ArrayDescriptor.className.equals("java.lang.Byte")) { - Byte I[] = ByteToByteObj(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className - .equals("java.lang.Integer")) { - Integer I[] = ByteToInteger(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className - .equals("java.lang.Short")) { - Short I[] = ByteToShort(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className - .equals("java.lang.Float")) { - Float I[] = ByteToFloatObj(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className - .equals("java.lang.Double")) { - Double I[] = ByteToDoubleObj(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className.equals("java.lang.Long")) { - Long I[] = ByteToLongObj(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: unsupported Object type: " - + ArrayDescriptor.NT); - throw (ex); - } - } - else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: unknown or unsupported type: " - + ArrayDescriptor.NT); - throw (ex); - } + Object arow = null; + int mm = m + ArrayDescriptor.dimlen[ArrayDescriptor.dims]; + switch (ArrayDescriptor.NT) { + case 'B': + arow = (Object) Arrays.copyOfRange((byte[]) flattenedArray, m, mm); + break; + case 'S': + arow = (Object) Arrays.copyOfRange((short[]) flattenedArray, m, mm); + break; + case 'I': + arow = (Object) Arrays.copyOfRange((int[]) flattenedArray, m, mm); + break; + case 'J': + arow = (Object) Arrays.copyOfRange((long[]) flattenedArray, m, mm); + break; + case 'F': + arow = (Object) Arrays.copyOfRange((float[]) flattenedArray, m, mm); + break; + case 'D': + arow = (Object) Arrays.copyOfRange((double[]) flattenedArray, m, mm); + break; + case 'L': + { + if (ArrayDescriptor.className.equals("java.lang.Byte")) + arow = (Object) Arrays.copyOfRange((Byte[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Short")) + arow = (Object) Arrays.copyOfRange((Short[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Integer")) + arow = (Object) Arrays.copyOfRange((Integer[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Long")) + arow = (Object) Arrays.copyOfRange((Long[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Float")) + arow = (Object) Arrays.copyOfRange((Float[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Double")) + arow = (Object) Arrays.copyOfRange((Double[]) flattenedArray, m, mm); + else { + HDF5JavaException ex = new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT); + throw (ex); + } + } // end of statement for arrays of boxed numerics + } // end of switch statement for arrays of primitives + + java.lang.reflect.Array.set(ArrayDescriptor.objs[ArrayDescriptor.dims - 2], + (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), arow); + n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; + ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; + m = mm; } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: arrayify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: arrayify array too big?"); throw (ex); } - } /* assert: the whole array is completed--currentindex should == len - 1 */ - /* error checks */ - if (n < ArrayDescriptor.totalSize) { - throw new java.lang.InternalError(new String( - "HDFArray::arrayify Panic didn't complete all input data: n= " - + n + " size = " + ArrayDescriptor.totalSize)); + throw new java.lang.InternalError(new String("HDFArray::arrayify Panic didn't complete all input data: n= " + + n + " size = " + ArrayDescriptor.totalSize)); } for (i = 0; i <= ArrayDescriptor.dims - 2; i++) { if (ArrayDescriptor.currentindex[i] != ArrayDescriptor.dimlen[i] - 1) { - throw new java.lang.InternalError(new String( - "HDFArray::arrayify Panic didn't complete all data: currentindex[" - + i + "] = " + ArrayDescriptor.currentindex[i] - + " (should be " - + (ArrayDescriptor.dimlen[i] - 1) + "?")); - } - } - if (ArrayDescriptor.NT != 'B') { - if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1]) { - throw new java.lang.InternalError(new String( - "HDFArray::arrayify Panic didn't complete all data: currentindex[" - + i + "] = " + ArrayDescriptor.currentindex[i] - + " (should be " + (ArrayDescriptor.dimlen[i]) + throw new java.lang.InternalError( + new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = " + + ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i] - 1) + "?")); } } - else { - if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != (ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1] - 1)) { - throw new java.lang.InternalError(new String( - "HDFArray::arrayify Panic didn't complete all data: currentindex[" - + i + "] = " + ArrayDescriptor.currentindex[i] - + " (should be " - + (ArrayDescriptor.dimlen[i] - 1) + "?")); - } + if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != ArrayDescriptor.dimlen[ArrayDescriptor.dims + - 1]) { + throw new java.lang.InternalError( + new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = " + + ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i]) + "?")); } return _theArray; } - private byte[] IntegerToByte(Integer in[]) { + private byte[] IntegerToByte(Integer in[]) + { int nelems = java.lang.reflect.Array.getLength(in); int[] out = new int[nelems]; @@ -749,7 +573,8 @@ public class HDFArray { return HDFNativeData.intToByte(0, nelems, out); } - private Integer[] ByteToInteger(byte[] bin) { + private Integer[] ByteToInteger(byte[] bin) + { int in[] = HDFNativeData.byteToInt(bin); int nelems = java.lang.reflect.Array.getLength(in); Integer[] out = new Integer[nelems]; @@ -760,7 +585,8 @@ public class HDFArray { return out; } - private Integer[] ByteToInteger(int start, int len, byte[] bin) { + private Integer[] ByteToInteger(int start, int len, byte[] bin) + { int in[] = HDFNativeData.byteToInt(start, len, bin); int nelems = java.lang.reflect.Array.getLength(in); Integer[] out = new Integer[nelems]; @@ -771,7 +597,8 @@ public class HDFArray { return out; } - private byte[] ShortToByte(Short in[]) { + private byte[] ShortToByte(Short in[]) + { int nelems = java.lang.reflect.Array.getLength(in); short[] out = new short[nelems]; @@ -781,7 +608,8 @@ public class HDFArray { return HDFNativeData.shortToByte(0, nelems, out); } - private Short[] ByteToShort(byte[] bin) { + private Short[] ByteToShort(byte[] bin) + { short in[] = HDFNativeData.byteToShort(bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Short[] out = new Short[nelems]; @@ -792,7 +620,8 @@ public class HDFArray { return out; } - private Short[] ByteToShort(int start, int len, byte[] bin) { + private Short[] ByteToShort(int start, int len, byte[] bin) + { short in[] = (short[]) HDFNativeData.byteToShort(start, len, bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Short[] out = new Short[nelems]; @@ -803,7 +632,8 @@ public class HDFArray { return out; } - private byte[] ByteObjToByte(Byte in[]) { + private byte[] ByteObjToByte(Byte in[]) + { int nelems = java.lang.reflect.Array.getLength((Object) in); byte[] out = new byte[nelems]; @@ -813,7 +643,8 @@ public class HDFArray { return out; } - private Byte[] ByteToByteObj(byte[] bin) { + private Byte[] ByteToByteObj(byte[] bin) + { int nelems = java.lang.reflect.Array.getLength((Object) bin); Byte[] out = new Byte[nelems]; @@ -823,7 +654,8 @@ public class HDFArray { return out; } - private Byte[] ByteToByteObj(int start, int len, byte[] bin) { + private Byte[] ByteToByteObj(int start, int len, byte[] bin) + { Byte[] out = new Byte[len]; for (int i = 0; i < len; i++) { @@ -832,7 +664,8 @@ public class HDFArray { return out; } - private byte[] FloatObjToByte(Float in[]) { + private byte[] FloatObjToByte(Float in[]) + { int nelems = java.lang.reflect.Array.getLength((Object) in); float[] out = new float[nelems]; @@ -842,7 +675,8 @@ public class HDFArray { return HDFNativeData.floatToByte(0, nelems, out); } - private Float[] ByteToFloatObj(byte[] bin) { + private Float[] ByteToFloatObj(byte[] bin) + { float in[] = (float[]) HDFNativeData.byteToFloat(bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Float[] out = new Float[nelems]; @@ -853,7 +687,8 @@ public class HDFArray { return out; } - private Float[] ByteToFloatObj(int start, int len, byte[] bin) { + private Float[] ByteToFloatObj(int start, int len, byte[] bin) + { float in[] = (float[]) HDFNativeData.byteToFloat(start, len, bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Float[] out = new Float[nelems]; @@ -864,7 +699,8 @@ public class HDFArray { return out; } - private byte[] DoubleObjToByte(Double in[]) { + private byte[] DoubleObjToByte(Double in[]) + { int nelems = java.lang.reflect.Array.getLength((Object) in); double[] out = new double[nelems]; @@ -874,7 +710,8 @@ public class HDFArray { return HDFNativeData.doubleToByte(0, nelems, out); } - private Double[] ByteToDoubleObj(byte[] bin) { + private Double[] ByteToDoubleObj(byte[] bin) + { double in[] = (double[]) HDFNativeData.byteToDouble(bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Double[] out = new Double[nelems]; @@ -885,7 +722,8 @@ public class HDFArray { return out; } - private Double[] ByteToDoubleObj(int start, int len, byte[] bin) { + private Double[] ByteToDoubleObj(int start, int len, byte[] bin) + { double in[] = (double[]) HDFNativeData.byteToDouble(start, len, bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Double[] out = new Double[nelems]; @@ -896,7 +734,8 @@ public class HDFArray { return out; } - private byte[] LongObjToByte(Long in[]) { + private byte[] LongObjToByte(Long in[]) + { int nelems = java.lang.reflect.Array.getLength((Object) in); long[] out = new long[nelems]; @@ -906,7 +745,8 @@ public class HDFArray { return HDFNativeData.longToByte(0, nelems, out); } - private Long[] ByteToLongObj(byte[] bin) { + private Long[] ByteToLongObj(byte[] bin) + { long in[] = (long[]) HDFNativeData.byteToLong(bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Long[] out = new Long[nelems]; @@ -917,7 +757,8 @@ public class HDFArray { return out; } - private Long[] ByteToLongObj(int start, int len, byte[] bin) { + private Long[] ByteToLongObj(int start, int len, byte[] bin) + { long in[] = (long[]) HDFNativeData.byteToLong(start, len, bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Long[] out = new Long[nelems]; @@ -930,13 +771,11 @@ public class HDFArray { } /** - * This private class is used by HDFArray to discover the shape and type of an - * arbitrary array. + * This private class is used by HDFArray to discover the shape and type of an arbitrary array. * <p> * We use java.lang.reflection here. */ class ArrayDescriptor { - static String theType = ""; static Class theClass = null; static int[] dimlen = null; @@ -944,19 +783,19 @@ class ArrayDescriptor { static int[] currentindex = null; static int[] bytetoindex = null; static int totalSize = 0; + static int totalElements = 0; static Object[] objs = null; static char NT = ' '; /* must be B,S,I,L,F,D, else error */ static int NTsize = 0; static int dims = 0; static String className; - public ArrayDescriptor(Object anArray) throws HDF5Exception { - + public ArrayDescriptor(Object anArray) throws HDF5Exception + { Class tc = anArray.getClass(); if (tc.isArray() == false) { /* exception: not an array */ - HDF5Exception ex = new HDF5JavaException( - "ArrayDescriptor: not an array?: "); + HDF5Exception ex = new HDF5JavaException("ArrayDescriptor: not an array?: "); throw (ex); } @@ -1028,16 +867,14 @@ class ArrayDescriptor { NT = 'L'; className = "java.lang.String"; NTsize = 1; - throw new HDF5JavaException(new String( - "ArrayDesciptor: Warning: String array not fully supported yet")); + throw new HDF5JavaException(new String("ArrayDesciptor: Warning: String array not fully supported yet")); } else { /* * exception: not a numeric type */ - throw new HDF5JavaException(new String( - "ArrayDesciptor: Error: array is not numeric (type is " - + css + ") ?")); + throw new HDF5JavaException( + new String("ArrayDesciptor: Error: array is not numeric (type is " + css + ") ?")); } /* fill in the table */ @@ -1052,6 +889,7 @@ class ArrayDescriptor { dimlen[0] = 1; dimstart[0] = 0; currentindex[0] = 0; + int elements = 1; int i; for (i = 1; i <= dims; i++) { dimlen[i] = java.lang.reflect.Array.getLength((Object) o); @@ -1059,7 +897,9 @@ class ArrayDescriptor { objs[i] = o; dimstart[i] = 0; currentindex[i] = 0; + elements *= dimlen[i]; } + totalElements = elements; int j; int dd; @@ -1078,20 +918,19 @@ class ArrayDescriptor { /** * Debug dump */ - public void dumpInfo() { + public void dumpInfo() + { System.out.println("Type: " + theType); System.out.println("Class: " + theClass); System.out.println("NT: " + NT + " NTsize: " + NTsize); System.out.println("Array has " + dims + " dimensions (" + totalSize - + " bytes)"); + + " bytes, " + totalElements + " elements)"); int i; for (i = 0; i <= dims; i++) { Class tc = objs[i].getClass(); String ss = tc.toString(); - System.out.println(i + ": start " + dimstart[i] + ": len " - + dimlen[i] + " current " + currentindex[i] - + " bytetoindex " + bytetoindex[i] + " object " + objs[i] - + " otype " + ss); + System.out.println(i + ": start " + dimstart[i] + ": len " + dimlen[i] + " current " + currentindex[i] + + " bytetoindex " + bytetoindex[i] + " object " + objs[i] + " otype " + ss); } } } diff --git a/java/src/hdf/hdf5lib/callbacks/Callbacks.java b/java/src/hdf/hdf5lib/callbacks/Callbacks.java index e2033fa..11fa465 100644 --- a/java/src/hdf/hdf5lib/callbacks/Callbacks.java +++ b/java/src/hdf/hdf5lib/callbacks/Callbacks.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java index da59567..6c68f36 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,7 +14,28 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5A_info_t; -//Information class for link callback(for H5Aiterate) +/** + * Information class for link callback for H5Aiterate. + * + */ public interface H5A_iterate_cb extends Callbacks { - int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data); + /** + * application callback for each attribute + * + * @param loc_id the ID for the group or dataset being iterated over + * @param name the name of the current attribute about the object + * @param info the attribute's "info" struct + * @param op_data the operator data passed in to H5Aiterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5A_info_t info, H5A_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java index d229dd4..d612db3 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Aiterate. + * + */ public interface H5A_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java index a163f11..cf7ada6 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pset/get_append_flush) +/** + * Information class for link callback for H5Pset/get_append_flush. + * + */ public interface H5D_append_cb extends Callbacks { + /** + * application callback for each dataset access property list + * + * @param dataset_id the ID for the dataset being iterated over + * @param cur_dims the dimension sizes for determining boundary + * @param op_data the operator data passed in to H5Pset/get_append_flush + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long dataset_id, long[] cur_dims, H5D_append_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java index 4df25de..7fdb454 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Dappend. + * + */ public interface H5D_append_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java index 8f5b64e..54c12e3 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,29 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Diterate) +/** + * Information class for link callback for H5Diterate. + * + */ public interface H5D_iterate_cb extends Callbacks { + /** + * application callback for each dataset element + * + * @param elem the pointer to the element in memory containing the current point + * @param elem_type the datatype ID for the elements stored in elem + * @param ndim the number of dimensions for POINT array + * @param point the array containing the location of the element within the original dataspace + * @param op_data the operator data passed in to H5Diterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(byte[] elem, long elem_type, int ndim, long[] point, H5D_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java index 36194f9..305cf98 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Diterate. + * + */ public interface H5D_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java index 5b888b8..5722195 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,7 +14,27 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5E_error2_t; -//Information class for link callback(for H5Ewalk) +/** + * Information class for link callback for H5Ewalk. + * + */ public interface H5E_walk_cb extends Callbacks { + /** + * application callback for each error stack element + * + * @param nidx the index of the current error stack element + * @param info the error stack "info" struct + * @param op_data the operator data passed in to H5Ewalk + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java index 72b56d5..5bf0c8b 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Ewalk. + * + */ public interface H5E_walk_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java index 0b20422..d89fd2a 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Lvisit/H5Lvisit_by_name. + * + */ public interface H5L_iterate_opdata_t { } diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java index 31bff6e..53635bf 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,7 +14,28 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5L_info_t; -// Information class for link callback (for H5Lvisit/H5Lvisit_by_name). +/** + * Information class for link callback for H5Lvisit/H5Lvisit_by_name. + * + */ public interface H5L_iterate_t extends Callbacks { - int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data); + /** + * application callback for each group + * + * @param loc_id the ID for the group being iterated over + * @param name the name of the current link + * @param info the link's "info" struct + * @param op_data the operator data passed in to H5Literate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5L_info_t info, H5L_iterate_opdata_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java index 6f2b3cc..fd643b4 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Ovisit/H5Ovisit_by_name. + * + */ public interface H5O_iterate_opdata_t { } diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java index 45d7746..ecf868c 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,7 +14,28 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5O_info_t; -// Information class for link callback(for H5Ovisit/H5Ovisit_by_name) +/** + * Information class for link callback for H5Ovisit/H5Ovisit_by_name. + * + */ public interface H5O_iterate_t extends Callbacks { - int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data); + /** + * application callback for each group + * + * @param loc_id the ID for the group or dataset being iterated over + * @param name the name of the current object + * @param info the object's "info" struct + * @param op_data the operator data passed in to H5Oiterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5O_info_t info, H5O_iterate_opdata_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java index d5c2474..0a09a94 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,26 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_close_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list class being iterated over + * @param close_data the function to call when a property list is closed + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, H5P_cls_close_func_t close_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java index 918e05b..11e3a99 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_close_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java index d01185a..53f86be 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class + * + */ public interface H5P_cls_copy_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param new_prop_id the ID for the property list copy + * @param old_prop_id the ID for the property list class being copied + * @param copy_data the function to call when each property list in this class is copied + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long new_prop_id, long old_prop_id, H5P_cls_copy_func_t copy_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java index 0357959..78e5282 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_copy_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java index 7eb633b..8f4e782 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,26 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_create_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list class being iterated over + * @param create_data the function to call when each property list in this class is created + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, H5P_cls_create_func_t create_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java index a217f18..d919d97 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_create_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java index a133512..db98a67 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Piterate) +/** + * Information class for link callback for H5Piterate. + * + */ public interface H5P_iterate_cb extends Callbacks { + /** + * application callback for each property list + * + * @param plist the ID for the property list being iterated over + * @param name the name of the current property list + * @param op_data the operator data passed in to H5Piterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long plist, String name, H5P_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java index 5c25187..0035619 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,6 +12,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Piterate. + * + */ public interface H5P_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java index d332ffc..1aa7ce4 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_close_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property being closed + * @param size the size of the property value + * @param value the value of the property being closed + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java index dfb2cd3..49cef7d 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_compare_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param value1 the value of the first property being compared + * @param value2 the value of the second property being compared + * @param size the size of the property value + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(byte[] value1, byte[] value2, long size); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java index 9a4456e..f4924ee 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_copy_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property being copied + * @param size the size of the property value + * @param value the value of the property being copied + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java index 53f4bdd..bce024b 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_create_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property list being created + * @param size the size of the property value + * @param value the initial value for the property being created + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java index 44e8ac3..8c5dccc 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,28 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_delete_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID of the property list the property is deleted from + * @param name the name of the property being deleted + * @param size the size of the property value + * @param value the value of the property being deleted + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java index 5117bd2..0f3457f 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,28 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_get_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list being queried + * @param name the name of the property being queried + * @param size the size of the property value + * @param value the value being retrieved for the property + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java index ef01fc9..a55ca3a 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,7 +12,28 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_set_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list being modified + * @param name the name of the property being modified + * @param size the size of the property value + * @param value the value being set for the property + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java index 70e4160..0c23af1 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java @@ -31,6 +31,9 @@ package hdf.hdf5lib.exceptions; * */ public class HDF5Exception extends RuntimeException { + /** + * the specified detail message of this exception + */ protected String detailMessage; /** diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5AtomException.java b/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java index ee1b21f..04ee0bc 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5AtomException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java @@ -16,26 +16,26 @@ package hdf.hdf5lib.exceptions; /** * The class HDF5LibraryException returns errors raised by the HDF5 library. * <p> - * This sub-class represents HDF-5 major error code <b>H5E_ATOM</b> + * This sub-class represents HDF-5 major error code <b>H5E_ID</b> */ -public class HDF5AtomException extends HDF5LibraryException { +public class HDF5IdException extends HDF5LibraryException { /** - * Constructs an <code>HDF5AtomException</code> with no specified detail + * Constructs an <code>HDF5IdException</code> with no specified detail * message. */ - public HDF5AtomException() { + public HDF5IdException() { super(); } /** - * Constructs an <code>HDF5AtomException</code> with the specified detail + * Constructs an <code>HDF5IdException</code> with the specified detail * message. * * @param s * the detail message. */ - public HDF5AtomException(String s) { + public HDF5IdException(String s) { super(s); } diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java index 5192eb7..532355e 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java @@ -30,7 +30,9 @@ import hdf.hdf5lib.HDF5Constants; @SuppressWarnings("serial") public class HDF5LibraryException extends HDF5Exception { + /** major error number of the first error on the HDF5 library error stack. */ private final long majorErrorNumber; + /** minor error number of the first error on the HDF5 library error stack. */ private final long minorErrorNumber; /** @@ -201,14 +203,14 @@ public class HDF5LibraryException extends HDF5Exception { else if (err_code == HDF5Constants.H5E_CANTRELEASE) { return "Can't release object"; } - else if (err_code == HDF5Constants.H5E_BADATOM) { - return "Can't find atom information"; + else if (err_code == HDF5Constants.H5E_BADID) { + return "Can't find ID information"; } else if (err_code == HDF5Constants.H5E_BADGROUP) { return "Can't find group information"; } else if (err_code == HDF5Constants.H5E_CANTREGISTER) { - return "Can't register new atom"; + return "Can't register new ID"; } else if (err_code == HDF5Constants.H5E_CANTINC) { return "Can't increment reference count"; diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java index 9a5392b..0701244 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java @@ -13,6 +13,12 @@ package hdf.hdf5lib.exceptions; +/** + * The class HDF5LibraryException returns errors raised by the HDF5 library. + * <p> + * This sub-class represents HDF-5 major error code <b>H5E_REFERENCE</b> + */ + public class HDF5ReferenceException extends HDF5LibraryException { /** * Constructs an <code>HDF5ReferenceException</code> with no specified diff --git a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java index 082cb56..cf84532 100644 --- a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java +++ b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,44 +14,276 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for H5Pget_mdc_config/H5Pset_mdc_config +/** + * Information struct for H5Pget_mdc_config/H5Pset_mdc_config + * + */ public class H5AC_cache_config_t implements Serializable{ private static final long serialVersionUID = -6748085696476149972L; - // general configuration fields: + // general configuration fields + /** + * version: Integer field containing the version number of this version + * of the H5AC_cache_config_t structure. Any instance of + * H5AC_cache_config_t passed to the cache must have a known + * version number, or an error will be flagged. + */ public int version; + /** + * rpt_fcn_enabled: Boolean field used to enable and disable the default + * reporting function. This function is invoked every time the + * automatic cache resize code is run, and reports on its activities. + * + * This is a debugging function, and should normally be turned off. + */ public boolean rpt_fcn_enabled; + /** + * open_trace_file: Boolean field indicating whether the trace_file_name + * field should be used to open a trace file for the cache. + * + * *** DEPRECATED *** Use H5Fstart/stop logging functions instead + */ public boolean open_trace_file; + /** + * close_trace_file: Boolean field indicating whether the current trace + * file (if any) should be closed. + * + * *** DEPRECATED *** Use H5Fstart/stop logging functions instead + */ public boolean close_trace_file; + /** + * trace_file_name: Full path of the trace file to be opened if the + * open_trace_file field is TRUE. + * + * *** DEPRECATED *** Use H5Fstart/stop logging functions instead + */ public String trace_file_name; + /** + * evictions_enabled: Boolean field used to either report the current + * evictions enabled status of the cache, or to set the cache's + * evictions enabled status. + */ public boolean evictions_enabled; + /** + * set_initial_size: Boolean flag indicating whether the size of the + * initial size of the cache is to be set to the value given in + * the initial_size field. If set_initial_size is FALSE, the + * initial_size field is ignored. + */ public boolean set_initial_size; + /** + * initial_size: If enabled, this field contain the size the cache is + * to be set to upon receipt of this structure. Needless to say, + * initial_size must lie in the closed interval [min_size, max_size]. + */ public long initial_size; + /** + * min_clean_fraction: double in the range 0 to 1 indicating the fraction + * of the cache that is to be kept clean. This field is only used + * in parallel mode. Typical values are 0.1 to 0.5. + */ public double min_clean_fraction; + /** + * max_size: Maximum size to which the cache can be adjusted. The + * supplied value must fall in the closed interval + * [MIN_MAX_CACHE_SIZE, MAX_MAX_CACHE_SIZE]. Also, max_size must + * be greater than or equal to min_size. + */ public long max_size; + /** + * min_size: Minimum size to which the cache can be adjusted. The + * supplied value must fall in the closed interval + * [H5C__MIN_MAX_CACHE_SIZE, H5C__MAX_MAX_CACHE_SIZE]. Also, min_size + * must be less than or equal to max_size. + */ public long min_size; + /** + * epoch_length: Number of accesses on the cache over which to collect + * hit rate stats before running the automatic cache resize code, + * if it is enabled. + */ public long epoch_length; - // size increase control fields: - public int incr_mode; // H5C_cache_incr_mode + // size increase control fields + /** + * incr_mode: Instance of the H5C_cache_incr_mode enumerated type whose + * value indicates how we determine whether the cache size should be + * increased. At present there are two possible values. + */ + public int incr_mode; + /** + * lower_hr_threshold: Lower hit rate threshold. If the increment mode + * (incr_mode) is H5C_incr__threshold and the hit rate drops below the + * value supplied in this field in an epoch, increment the cache size by + * size_increment. Note that cache size may not be incremented above + * max_size, and that the increment may be further restricted by the + * max_increment field if it is enabled. + */ public double lower_hr_threshold; + /** + * increment: Double containing the multiplier used to derive the new + * cache size from the old if a cache size increment is triggered. + * The increment must be greater than 1.0, and should not exceed 2.0. + */ public double increment; + /** + * apply_max_increment: Boolean flag indicating whether the max_increment + * field should be used to limit the maximum cache size increment. + */ public boolean apply_max_increment; + /** + * max_increment: If enabled by the apply_max_increment field described + * above, this field contains the maximum number of bytes by which the + * cache size can be increased in a single re-size. + */ public long max_increment; - public int flash_incr_mode; // H5C_cache_flash_incr_mode + /** + * flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated + * type whose value indicates whether and by which algorithm we should + * make flash increases in the size of the cache to accommodate insertion + * of large entries and large increases in the size of a single entry. + */ + public int flash_incr_mode; + /** + * flash_multiple: Double containing the multiple described above in the + * H5C_flash_incr__add_space section of the discussion of the + * flash_incr_mode section. This field is ignored unless flash_incr_mode + * is H5C_flash_incr__add_space. + */ public double flash_multiple; + /** + * flash_threshold: Double containing the factor by which current max cache + * size is multiplied to obtain the size threshold for the add_space flash + * increment algorithm. The field is ignored unless flash_incr_mode is + * H5C_flash_incr__add_space. + */ public double flash_threshold; - // size decrease control fields: - public int decr_mode; // H5C_cache_decr_mode + // size decrease control fields + /** + * decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose + * value indicates how we determine whether the cache size should be + * decreased. At present there are four possibilities. + */ + public int decr_mode; + /** + * upper_hr_threshold: Upper hit rate threshold. The use of this field + * varies according to the current decr_mode. + */ public double upper_hr_threshold; + /** + * decrement: This field is only used when the decr_mode is + * H5C_decr__threshold. + */ public double decrement; + /** + * apply_max_decrement: Boolean flag used to determine whether decrements + * in cache size are to be limited by the max_decrement field. + */ public boolean apply_max_decrement; + /** + * max_decrement: Maximum number of bytes by which the cache size can be + * decreased in a single re-size. Note that decrements may also be + * restricted by the min_size of the cache, and (in age out modes) by + * the empty_reserve field. + */ public long max_decrement; + /** + * epochs_before_eviction: Integer field used in H5C_decr__age_out and + * H5C_decr__age_out_with_threshold decrement modes. + */ public int epochs_before_eviction; + /** + * apply_empty_reserve: Boolean field controlling whether the empty_reserve + * field is to be used in computing the new cache size when the + * decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold. + */ public boolean apply_empty_reserve; + /** + * empty_reserve: To avoid a constant racheting down of cache size by small + * amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold + * modes, this field allows one to require that any cache size + * reductions leave the specified fraction of unused space in the cache. + */ public double empty_reserve; - // parallel configuration fields: + // parallel configuration fields + /** + * dirty_bytes_threshold: Threshold of dirty byte creation used to + * synchronize updates between caches. + */ public long dirty_bytes_threshold; + /** + * metadata_write_strategy: Integer field containing a code indicating the + * desired metadata write strategy. + */ public int metadata_write_strategy; + /** H5AC_cache_config_t is a public structure intended for use in public APIs. + * At least in its initial incarnation, it is basically a copy of struct + * H5C_auto_size_ctl_t, minus the report_fcn field, and plus the + * dirty_bytes_threshold field. + * + * @param version: Integer field containing the version number of this version + * @param rpt_fcn_enabled: Boolean field used to enable and disable the default reporting function. + * @param open_trace_file: Boolean field indicating whether the trace_file_name + * field should be used to open a trace file for the cache. + * @param close_trace_file: Boolean field indicating whether the current trace + * file (if any) should be closed. + * @param trace_file_name: Full path of the trace file to be opened if the + * open_trace_file field is TRUE. + * @param evictions_enabled: Boolean field used to either report or set the current + * evictions enabled status of the cache. + * @param set_initial_size: Boolean flag indicating whether the size of the + * initial size of the cache is to be set to the value given in + * the initial_size field. + * @param initial_size: If enabled, this field contain the size the cache is + * to be set to upon receipt of this structure. + * @param min_clean_fraction: double in the range 0 to 1 indicating the fraction + * of the cache that is to be kept clean. + * @param max_size: Maximum size to which the cache can be adjusted. + * @param min_size: Minimum size to which the cache can be adjusted. + * @param epoch_length: Number of accesses on the cache over which to collect + * hit rate stats before running the automatic cache resize code. + * @param incr_mode: Instance of the H5C_cache_incr_mode enumerated type. + * @param lower_hr_threshold: Lower hit rate threshold. + * @param increment: Double containing the multiplier used to derive the new + * cache size from the old if a cache size increment is triggered. + * @param apply_max_increment: Boolean flag indicating whether the max_increment + * field should be used to limit the maximum cache size increment. + * @param max_increment: If enabled by the apply_max_increment field described + * above, this field contains the maximum number of bytes by which the + * cache size can be increased in a single re-size. + * @param flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated + * type whose value indicates whether and by which algorithm we should + * make flash increases in the size of the cache to accommodate insertion + * of large entries and large increases in the size of a single entry. + * @param flash_multiple: Double containing the multiple described above in the + * H5C_flash_incr__add_space section of the discussion of the + * flash_incr_mode section. + * @param flash_threshold: Double containing the factor by which current max cache + * size is multiplied to obtain the size threshold for the add_space flash + * increment algorithm. + * @param decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose + * value indicates how we determine whether the cache size should be + * decreased. + * @param upper_hr_threshold: Upper hit rate threshold. The use of this field + * varies according to the current decr_mode. + * @param decrement: This field is only used when the decr_mode is + * H5C_decr__threshold. + * @param apply_max_decrement: Boolean flag used to determine whether decrements + * in cache size are to be limited by the max_decrement field. + * @param max_decrement: Maximum number of bytes by which the cache size can be + * decreased in a single re-size. + * @param epochs_before_eviction: Integer field used in H5C_decr__age_out and + * H5C_decr__age_out_with_threshold decrement modes. + * @param apply_empty_reserve: Boolean field controlling whether the empty_reserve + * field is to be used in computing the new cache size when the + * decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold. + * @param empty_reserve: To avoid a constant racheting down of cache size by small + * amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold + * modes. + * @param dirty_bytes_threshold: Threshold of dirty byte creation used to + * synchronize updates between caches. + * @param metadata_write_strategy: Integer field containing a code indicating the + * desired metadata write strategy. + */ public H5AC_cache_config_t (int version, boolean rpt_fcn_enabled, boolean open_trace_file, boolean close_trace_file, String trace_file_name, boolean evictions_enabled, boolean set_initial_size, long initial_size, double min_clean_fraction, long max_size, diff --git a/java/src/hdf/hdf5lib/structs/H5A_info_t.java b/java/src/hdf/hdf5lib/structs/H5A_info_t.java index 334ac24..f2c10f0 100644 --- a/java/src/hdf/hdf5lib/structs/H5A_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5A_info_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,13 +14,20 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name) +/** + * Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name) + * + */ public class H5A_info_t implements Serializable{ private static final long serialVersionUID = 2791443594041667613L; - public boolean corder_valid; // Indicate if creation order is valid - public long corder; // Creation order of attribute - public int cset; // Character set of attribute name - public long data_size; // Size of raw data + /** Indicate if creation order is valid */ + public boolean corder_valid; + /** Creation order of attribute */ + public long corder; + /** Character set of attribute name */ + public int cset; + /** Size of raw data */ + public long data_size; H5A_info_t(boolean corder_valid, long corder, int cset, long data_size) { this.corder_valid = corder_valid; diff --git a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java index f0a0158..5981fc7 100644 --- a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java +++ b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,17 +14,26 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for Attribute (For H5Ewalk) +/** + * Information struct for Attribute (For H5Ewalk) + * + */ public class H5E_error2_t implements Serializable{ private static final long serialVersionUID = 279144359041667613L; - - public long cls_id; //class ID - public long maj_num; //major error ID - public long min_num; //minor error number - public int line; //line in file where error occurs - public String func_name; //function in which error occurred - public String file_name; //file in which error occurred - public String desc; //optional supplied description + /** class ID */ + public long cls_id; + /** major error ID */ + public long maj_num; + /** minor error number */ + public long min_num; + /** line in file where error occurs */ + public int line; + /** function in which error occurred */ + public String func_name; + /** file in which error occurred */ + public String file_name; + /** optional supplied description */ + public String desc; H5E_error2_t(long cls_id, long maj_num, long min_num, int line, String func_name, String file_name, String desc) { this.cls_id = cls_id; diff --git a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java index 9fcff2e..5da4abd 100644 --- a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java +++ b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java @@ -16,7 +16,7 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -/* +/** * Java representation of the HDFS VFD file access property list (fapl) * structure. * @@ -26,15 +26,31 @@ import java.io.Serializable; public class H5FD_hdfs_fapl_t implements Serializable { private static final long serialVersionUID = 2072473407027648309L; + /** Version number of the H5FD_hdfs_fapl_t structure. */ private int version; + /** Name of "Name Node" to access as the HDFS server. */ private String namenode_name; + /** Port number to use to connect with Name Node. */ private int namenode_port; + /** Username to use when accessing file. */ private String user_name; + /** Path to the location of the Kerberos authentication cache. */ private String kerberos_ticket_cache; + /** Size (in bytes) of the file read stream buffer. */ private int stream_buffer_size; - /* + /** * Create a fapl_t structure with the specified components. + * @param namenode_name + * Name of "Name Node" to access as the HDFS server. + * @param namenode_port + * Port number to use to connect with Name Node. + * @param user_name + * Username to use when accessing file. + * @param kerberos_ticket_cache + * Path to the location of the Kerberos authentication cache. + * @param stream_buffer_size + * Size (in bytes) of the file read stream buffer. */ public H5FD_hdfs_fapl_t( String namenode_name, diff --git a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java index a899e10..39f5424 100644 --- a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java +++ b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java @@ -16,7 +16,7 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -/* +/** * Java representation of the ROS3 VFD file access property list (fapl) * structure. * @@ -46,10 +46,15 @@ import java.io.Serializable; public class H5FD_ros3_fapl_t implements Serializable { private static final long serialVersionUID = 8985533001471224030L; + /** Version number of the H5FD_ros3_fapl_t structure */ private int version; + /** Flag TRUE or FALSE whether or not requests are to be authenticated with the AWS4 algorithm. */ private boolean authenticate; + /** region "aws region" for authenticating request */ private String aws_region; + /** id "secret id" or "access id" for authenticating request */ private String secret_id; + /** key "secret key" or "access key" for authenticating request */ private String secret_key; /** diff --git a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java index 6f5f595..f951bb4 100644 --- a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java +++ b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,19 +14,43 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for object (for H5Fget_info) +/** + * Information struct for object (for H5Fget_info) + * + */ public class H5F_info2_t implements Serializable{ private static final long serialVersionUID = 4691681162544054518L; - public int super_version; // Superblock version # - public long super_size; // Superblock size - public long super_ext_size; // Superblock extension size - public int free_version; // Version # of file free space management - public long free_meta_size; // Free space manager metadata size - public long free_tot_space; // Amount of free space in the file - public int sohm_version; // Version # of shared object header info - public long sohm_hdr_size; // Shared object header message header size - public H5_ih_info_t sohm_msgs_info; // Shared object header message index & heap size + /** Superblock version number */ + public int super_version; + /** Superblock size */ + public long super_size; + /** Superblock extension size */ + public long super_ext_size; + /** Version number of file free space management */ + public int free_version; + /** Free space manager metadata size */ + public long free_meta_size; + /** Amount of free space in the file */ + public long free_tot_space; + /** Version number of shared object header info */ + public int sohm_version; + /** Shared object header message header size */ + public long sohm_hdr_size; + /** Shared object header message index and heap size */ + public H5_ih_info_t sohm_msgs_info; + /** + * Constructor fot current "global" information about file + * @param super_version: Superblock version number + * @param super_size: Superblock size + * @param super_ext_size: Superblock extension size + * @param free_version: Version number of file free space management + * @param free_meta_size: Free space manager metadata size + * @param free_tot_space: Amount of free space in the file + * @param sohm_version: Version number of shared object header info + * @param sohm_hdr_size: Shared object header message header size + * @param sohm_msgs_info: Shared object header message index and heap size + */ public H5F_info2_t (int super_version, long super_size, long super_ext_size, int free_version, long free_meta_size, long free_tot_space, int sohm_version, long sohm_hdr_size, H5_ih_info_t sohm_msgs_info) diff --git a/java/src/hdf/hdf5lib/structs/H5G_info_t.java b/java/src/hdf/hdf5lib/structs/H5G_info_t.java index e9f0aac..e79f859 100644 --- a/java/src/hdf/hdf5lib/structs/H5G_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5G_info_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,11 +14,18 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) +/** + * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) + * + */ public class H5G_info_t implements Serializable{ private static final long serialVersionUID = -3746463015312132912L; - public int storage_type; // Type of storage for links in group - public long nlinks; // Number of links in group - public long max_corder; // Current max. creation order value for group - public boolean mounted; // Whether group has a file mounted on it + /** Type of storage for links in group */ + public int storage_type; + /** Number of links in group */ + public long nlinks; + /** Current max. creation order value for group */ + public long max_corder; + /** Whether group has a file mounted on it */ + public boolean mounted; } diff --git a/java/src/hdf/hdf5lib/structs/H5L_info_t.java b/java/src/hdf/hdf5lib/structs/H5L_info_t.java index 4a1545b..a3011c0 100644 --- a/java/src/hdf/hdf5lib/structs/H5L_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5L_info_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -17,17 +16,26 @@ import java.io.Serializable; import hdf.hdf5lib.HDF5Constants; -// Information struct for link (for H5Lget_info/H5Lget_info_by_idx) +/** + * Information struct for link (for H5Lget_info/H5Lget_info_by_idx) + * + */ public class H5L_info_t implements Serializable { private static final long serialVersionUID = -4754320605310155033L; + /** Type of link */ public int type; + /** Indicate if creation order is valid */ public boolean corder_valid; + /** Creation order */ public long corder; + /** Character set of link name */ public int cset; + /** Character set of link name */ public H5O_token_t token; + /** Size of a soft link or user-defined link value */ public long val_size; - // Constructor for using object token portion of C union + /** Constructor for using object token portion of C union */ H5L_info_t (int type, boolean corder_valid, long corder, int cset, H5O_token_t token) { @@ -39,7 +47,7 @@ public class H5L_info_t implements Serializable { this.val_size = -1; } - // Constructor for using val_size portion of C union + /** Constructor for using val_size portion of C union */ H5L_info_t (int type, boolean corder_valid, long corder, int cset, long val_size) { diff --git a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java index 596337d..2475dd9 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,19 +14,32 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -// Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) +/** + * Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) + * + */ public class H5O_hdr_info_t implements Serializable { private static final long serialVersionUID = 7883826382952577189L; - public int version; /* Version number of header format in file */ - public int nmesgs; /* Number of object header messages */ - public int nchunks; /* Number of object header chunks */ - public int flags; /* Object header status flags */ - public long space_total; /* Total space for storing object header in file */ - public long space_meta; /* Space within header for object header metadata information */ - public long space_mesg; /* Space within header for actual message information */ - public long space_free; /* Free space within object header */ - public long mesg_present; /* Flags to indicate presence of message type in header */ - public long mesg_shared; /* Flags to indicate message type is shared in header */ + /** Version number of header format in file */ + public int version; + /** Number of object header messages */ + public int nmesgs; + /** Number of object header chunks */ + public int nchunks; + /** Object header status flags */ + public int flags; + /** Total space for storing object header in file */ + public long space_total; + /** Space within header for object header metadata information */ + public long space_meta; + /** Space within header for actual message information */ + public long space_mesg; + /** Free space within object header */ + public long space_free; + /** Flags to indicate presence of message type in header */ + public long mesg_present; + /** Flags to indicate message type is shared in header */ + public long mesg_shared; H5O_hdr_info_t (int version, int nmesgs, int nchunks, int flags, long space_total, long space_meta, long space_mesg, long space_free, @@ -56,25 +68,25 @@ public class H5O_hdr_info_t implements Serializable { H5O_hdr_info_t info = (H5O_hdr_info_t) o; if (this.version != info.version) - return false; + return false; if (this.nmesgs != info.nmesgs) - return false; + return false; if (this.nchunks != info.nchunks) - return false; + return false; if (this.flags != info.flags) - return false; + return false; if (this.space_total != info.space_total) - return false; + return false; if (this.space_meta != info.space_meta) - return false; + return false; if (this.space_mesg != info.space_mesg) - return false; + return false; if (this.space_free != info.space_free) - return false; + return false; if (this.mesg_present != info.mesg_present) - return false; + return false; if (this.mesg_shared != info.mesg_shared) - return false; + return false; return true; } diff --git a/java/src/hdf/hdf5lib/structs/H5O_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_info_t.java index 7bf1336..d2208d2 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_info_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,19 +14,43 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -// Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) +/** + * Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) + * + */ public class H5O_info_t implements Serializable { private static final long serialVersionUID = 4691681163544054518L; - public long fileno; /* File number that object is located in */ - public H5O_token_t token; /* Object token in file */ - public int type; /* Basic object type (group, dataset, etc.) */ - public int rc; /* Reference count of object */ - public long atime; /* Access time */ - public long mtime; /* Modification time */ - public long ctime; /* Change time */ - public long btime; /* Birth time */ - public long num_attrs; /* # of attributes attached to object */ + /** File number that object is located in */ + public long fileno; + /** Object token in file */ + public H5O_token_t token; + /** Basic object type (group, dataset, etc.) */ + public int type; + /** Reference count of object */ + public int rc; + /** Access time */ + public long atime; + /** Modification time */ + public long mtime; + /** Change time */ + public long ctime; + /** Birth time */ + public long btime; + /** Number of attributes attached to object */ + public long num_attrs; + /** Constructor for data model information struct for objects + * + * @param fileno: File number that object is located in + * @param token: Object token in file + * @param type: Basic object type + * @param rc: Reference count of object + * @param atime: Access time + * @param mtime: Modification time + * @param ctime: Change time + * @param btime: Birth time + * @param num_attrs: Number of attributes attached to object + */ public H5O_info_t (long fileno, H5O_token_t token, int type, int rc, long atime, long mtime, long ctime, long btime, long num_attrs) { diff --git a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java index f859ca4..70e5231 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,15 +14,20 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -// Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx). +/** + * Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx). + * + */ public class H5O_native_info_t implements Serializable { private static final long serialVersionUID = 7883826382952577189L; - - public H5O_hdr_info_t hdr_info; /* Object header information */ + /** Object header information */ + public H5O_hdr_info_t hdr_info; /* Extra metadata storage for obj & attributes */ - public H5_ih_info_t obj_info; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */ - public H5_ih_info_t attr_info; /* v2 B-tree & heap for attributes */ + /** v1/v2 B-tree and local/fractal heap for groups, B-tree for chunked datasets */ + public H5_ih_info_t obj_info; + /** v2 B-tree and heap for attributes */ + public H5_ih_info_t attr_info; H5O_native_info_t (H5O_hdr_info_t oheader_info, H5_ih_info_t obj_info, H5_ih_info_t attr_info) { @@ -45,7 +49,7 @@ public class H5O_native_info_t implements Serializable { if (!this.hdr_info.equals(info.hdr_info) || !this.obj_info.equals(info.obj_info) || !this.attr_info.equals(info.attr_info)) - return false; + return false; return true; } diff --git a/java/src/hdf/hdf5lib/structs/H5O_token_t.java b/java/src/hdf/hdf5lib/structs/H5O_token_t.java index 24612bb..f0bb978 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_token_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_token_t.java @@ -17,15 +17,28 @@ import java.util.Arrays; import hdf.hdf5lib.HDF5Constants; -// Object token, which is a unique and permanent identifier, for an HDF5 object within a container. +/** + * Object token, which is a unique and permanent identifier, for an HDF5 object within a container. + * + */ public class H5O_token_t implements Serializable { private static final long serialVersionUID = -4754320605310155032L; + /** + * Tokens are unique and permanent identifiers that are + * used to reference HDF5 objects in a container. + * Use basic byte array to store the dat + */ public byte[] data; H5O_token_t (byte[] data) { this.data = data; } + /** + * Check if token data is undefined + * + * @return true if token data is undefined + */ public boolean isUndefined() { return this.equals(HDF5Constants.H5O_TOKEN_UNDEF); } diff --git a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java index db89c9a..0c6111b 100644 --- a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -15,10 +14,15 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) +/** + * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) + * + */ public class H5_ih_info_t implements Serializable { private static final long serialVersionUID = -142238015615462707L; - public long index_size; /* btree and/or list */ + /** btree and/or list size of index */ + public long index_size; + /** btree and/or list size of hp */ public long heap_size; H5_ih_info_t (long index_size, long heap_size) @@ -38,9 +42,9 @@ public class H5_ih_info_t implements Serializable { H5_ih_info_t info = (H5_ih_info_t) o; if (this.index_size != info.index_size) - return false; + return false; if (this.heap_size != info.heap_size) - return false; + return false; return true; } |