Merge pull request #1590 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:1.10/master to 1.10/masterhdf5-1_10_5

* commit '6819c11508b0610f222fe3bfe8a19f637bf4319c': (154 commits)
  CMake needs a tar.gz examples file for windows, too.
  Correct file permissions on README.txt.
  Address merge anomalies and incorrect file permissions.
  Update release date in README.txt and RELEASE.txt.
  Revisions to Platforms tested.
  Updated LT_VERS_AGE in config/lt_vers.am due to reinstatement of previously removed symbols, then ran autogen.sh to propagate so number changes and H5E_LOGFAIL_g addition to files checked in on release branch.
  Updated H5err.txt to replace a global variable that was removed during the metadata cache logging changes (to maintain binary compatibility).
  HDFFV-10552,10686 restore H5O_*1 functions
  Minor fix in h5str_sprintf for NULL region references
  Add new files to MANIFEST.
  Update so version numbers. fix 2 typos.
  Update RELEASE.txt for TRILABS-34 and remove unused sections.
  Add script for building HDF5 with CMake on HPC machines that use sbatch. Add README file for inclusion in CMake-hdf5-<version>.tar.gz file. Add updated README_HPC file with cross compile instructions.
  set version to 1.10.5-pre1. Change default build mode to production.
  Merge pull request #1560 in HDFFV/hdf5 from hdf5-1-10-documentation-only to hdf5_1_10_5
  Update HISTORY-1_10.txt and RELEASE.txt files.
  Modify RELEASE.txt in response to PR comments
  Check in files generated by autogen.sh for hdf5_1_10_5 release branch.
  Check in files generated by autogen.sh for hdf5_1_10_5 release branch. 2019/02/16.
  Code improvement
  ...

1 files changed, 29 insertions, 1 deletions

diff --git a/java/src/jni/CMakeLists.txt b/java/src/jni/CMakeLists.txt
index 7b95e0b..ca48fa6 100644
--- a/java/src/jni/CMakeLists.txt
+++ b/java/src/jni/CMakeLists.txt
@@ -14,6 +14,19 @@ set (HDF5_JAVA_JNI_CSRCS
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.c
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.c
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pACPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDAPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDCPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDXPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFAPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFCPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGAPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGCPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLAPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLCPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCpyPLImp.c
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pStrCPLImp.c
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5plImp.c
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5rImp.c
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.c
@@ -35,6 +48,19 @@ set (HDF5_JAVA_JNI_CHDRS
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.h
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.h
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pACPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDAPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDCPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDXPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFAPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFCPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGAPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGCPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLAPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLCPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCpyPLImp.h
+    ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pStrCPLImp.h
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5plImp.h
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5rImp.h
     ${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.h
@@ -48,7 +74,9 @@ set (CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON)
 
 ########### JNI libraries always must be built shared  ###############
 add_library (${HDF5_JAVA_JNI_LIB_TARGET} SHARED ${HDF5_JAVA_JNI_CSRCS} ${HDF5_JAVA_JNI_CHDRS})
-target_include_directories(${HDF5_JAVA_JNI_LIB_TARGET} PRIVATE ${HDF5_BINARY_DIR} ${HDF5_JAVA_JNI_SOURCE_DIR})
+target_include_directories(${HDF5_JAVA_JNI_LIB_TARGET}
+    PRIVATE "${HDF5_BINARY_DIR};${HDF5_JAVA_JNI_SOURCE_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+)
 TARGET_C_PROPERTIES (${HDF5_JAVA_JNI_LIB_TARGET} SHARED)
 target_link_libraries (${HDF5_JAVA_JNI_LIB_TARGET} PUBLIC ${HDF5_LIBSH_TARGET})
 set_target_properties (${HDF5_JAVA_JNI_LIB_TARGET} PROPERTIES FOLDER libraries/jni)