diff options
author | Larry Knox <lrknox@hdfgroup.org> | 2022-07-26 19:30:04 (GMT) |
---|---|---|
committer | GitHub <noreply@github.com> | 2022-07-26 19:30:04 (GMT) |
commit | d0739f13c131fd8d85c4b3247c26ca2bca515ece (patch) | |
tree | a70ce4e47b6689ae6b9aa5d47c9e143347998a97 /java/src/jni/h5dImp.c | |
parent | 6eaa59d2f83a89e9b4808f04caa48d313e658df1 (diff) | |
download | hdf5-d0739f13c131fd8d85c4b3247c26ca2bca515ece.zip hdf5-d0739f13c131fd8d85c4b3247c26ca2bca515ece.tar.gz hdf5-d0739f13c131fd8d85c4b3247c26ca2bca515ece.tar.bz2 |
Revert "1.12 eliminate unnecessary errors in the error stack (#1880)" (#1935)
This reverts commit f6997681335f0b5fe2e8904f9108a71c5200fb2d.
Diffstat (limited to 'java/src/jni/h5dImp.c')
-rw-r--r-- | java/src/jni/h5dImp.c | 805 |
1 files changed, 576 insertions, 229 deletions
diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index 73b252a..a20bb6c 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -183,28 +183,24 @@ Java_hdf_hdf5lib_H5_H5Dread(JNIEnv *env, jclass clss, jlong dataset_id, jlong me jboolean isCriticalPinning) { jboolean readBufIsCopy; - htri_t data_class; jbyte * readBuf = NULL; - herr_t status = FAIL; + htri_t vl_data_class; + herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread: read buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: variable length type not supported"); - if (isCriticalPinning) { PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not critically pinned"); @@ -219,6 +215,9 @@ Java_hdf_hdf5lib_H5_H5Dread(JNIEnv *env, jclass clss, jlong dataset_id, jlong me done: if (readBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0); } @@ -241,28 +240,24 @@ Java_hdf_hdf5lib_H5_H5Dwrite(JNIEnv *env, jclass clss, jlong dataset_id, jlong m jboolean isCriticalPinning) { jboolean writeBufIsCopy; - htri_t data_class; jbyte * writeBuf = NULL; - herr_t status = FAIL; + htri_t vl_data_class; + herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: write buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: variable length type not supported"); - if (isCriticalPinning) { PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not critically pinned"); @@ -277,6 +272,9 @@ Java_hdf_hdf5lib_H5_H5Dwrite(JNIEnv *env, jclass clss, jlong dataset_id, jlong m done: if (writeBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0); } @@ -383,7 +381,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1short(JNIEnv *env, jclass clss, jlong dataset_id, j { jboolean readBufIsCopy; jshort * readBuf = NULL; - htri_t data_class; + htri_t vl_data_class; herr_t status = FAIL; UNUSED(clss); @@ -391,19 +389,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1short(JNIEnv *env, jclass clss, jlong dataset_id, j if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: read buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: variable length type not supported"); - if (isCriticalPinning) { PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not critically pinned"); @@ -418,6 +412,9 @@ Java_hdf_hdf5lib_H5_H5Dread_1short(JNIEnv *env, jclass clss, jlong dataset_id, j done: if (readBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0); } @@ -441,7 +438,7 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1short(JNIEnv *env, jclass clss, jlong dataset_id, { jboolean writeBufIsCopy; jshort * writeBuf = NULL; - htri_t data_class; + htri_t vl_data_class; herr_t status = FAIL; UNUSED(clss); @@ -449,19 +446,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1short(JNIEnv *env, jclass clss, jlong dataset_id, if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: write buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: variable length type not supported"); - if (isCriticalPinning) { PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not critically pinned"); @@ -476,6 +469,9 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1short(JNIEnv *env, jclass clss, jlong dataset_id, done: if (writeBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0); } @@ -498,28 +494,24 @@ Java_hdf_hdf5lib_H5_H5Dread_1int(JNIEnv *env, jclass clss, jlong dataset_id, jlo jboolean isCriticalPinning) { jboolean readBufIsCopy; - htri_t data_class; jint * readBuf = NULL; - herr_t status = FAIL; + htri_t vl_data_class; + herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: read buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: variable length type not supported"); - if (isCriticalPinning) { PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not critically pinned"); @@ -534,6 +526,9 @@ Java_hdf_hdf5lib_H5_H5Dread_1int(JNIEnv *env, jclass clss, jlong dataset_id, jlo done: if (readBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0); } @@ -556,28 +551,24 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1int(JNIEnv *env, jclass clss, jlong dataset_id, jl jboolean isCriticalPinning) { jboolean writeBufIsCopy; - htri_t data_class; jint * writeBuf = NULL; - herr_t status = FAIL; + htri_t vl_data_class; + herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: write buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: variable length type not supported"); - if (isCriticalPinning) { PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not critically pinned"); @@ -592,6 +583,9 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1int(JNIEnv *env, jclass clss, jlong dataset_id, jl done: if (writeBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0); } @@ -614,28 +608,24 @@ Java_hdf_hdf5lib_H5_H5Dread_1long(JNIEnv *env, jclass clss, jlong dataset_id, jl jlongArray buf, jboolean isCriticalPinning) { jboolean readBufIsCopy; - htri_t data_class; jlong * readBuf = NULL; - herr_t status = FAIL; + htri_t vl_data_class; + herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: read buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: variable length type not supported"); - if (isCriticalPinning) { PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not critically pinned"); @@ -650,6 +640,9 @@ Java_hdf_hdf5lib_H5_H5Dread_1long(JNIEnv *env, jclass clss, jlong dataset_id, jl done: if (readBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0); } @@ -672,28 +665,24 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1long(JNIEnv *env, jclass clss, jlong dataset_id, j jlongArray buf, jboolean isCriticalPinning) { jboolean writeBufIsCopy; - htri_t data_class; jlong * writeBuf = NULL; - herr_t status = FAIL; + htri_t vl_data_class; + herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: write buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: variable length type not supported"); - if (isCriticalPinning) { PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not critically pinned"); @@ -708,6 +697,9 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1long(JNIEnv *env, jclass clss, jlong dataset_id, j done: if (writeBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0); } @@ -730,28 +722,24 @@ Java_hdf_hdf5lib_H5_H5Dread_1float(JNIEnv *env, jclass clss, jlong dataset_id, j jfloatArray buf, jboolean isCriticalPinning) { jboolean readBufIsCopy; - htri_t data_class; jfloat * readBuf = NULL; - herr_t status = FAIL; + htri_t vl_data_class; + herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: read buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: variable length type not supported"); - if (isCriticalPinning) { PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not critically pinned"); @@ -766,6 +754,9 @@ Java_hdf_hdf5lib_H5_H5Dread_1float(JNIEnv *env, jclass clss, jlong dataset_id, j done: if (readBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0); } @@ -788,27 +779,23 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1float(JNIEnv *env, jclass clss, jlong dataset_id, jfloatArray buf, jboolean isCriticalPinning) { jboolean writeBufIsCopy; - htri_t data_class; jfloat * writeBuf = NULL; - herr_t status = FAIL; + htri_t vl_data_class; + herr_t status = FAIL; UNUSED(clss); if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: write buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: variable length type not supported"); - - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0"); + } if (isCriticalPinning) { PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, @@ -824,6 +811,9 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1float(JNIEnv *env, jclass clss, jlong dataset_id, done: if (writeBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0); } @@ -847,7 +837,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1double(JNIEnv *env, jclass clss, jlong dataset_id, { jboolean readBufIsCopy; jdouble *readBuf = NULL; - htri_t data_class; + htri_t vl_data_class; herr_t status = FAIL; UNUSED(clss); @@ -855,19 +845,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1double(JNIEnv *env, jclass clss, jlong dataset_id, if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: read buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: variable length type not supported"); + /* Get size of data array */ + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: readBuf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: variable length type not supported"); - if (isCriticalPinning) { PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not critically pinned"); @@ -882,6 +868,9 @@ Java_hdf_hdf5lib_H5_H5Dread_1double(JNIEnv *env, jclass clss, jlong dataset_id, done: if (readBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0); } @@ -905,7 +894,7 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double(JNIEnv *env, jclass clss, jlong dataset_id, { jboolean writeBufIsCopy; jdouble *writeBuf = NULL; - htri_t data_class; + htri_t vl_data_class; herr_t status = FAIL; UNUSED(clss); @@ -913,19 +902,14 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double(JNIEnv *env, jclass clss, jlong dataset_id, if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: write buffer is NULL"); - if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: variable length type not supported"); + if (ENVPTR->GetArrayLength(ENVONLY, buf) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: buf length < 0"); + } - /* Recursively detect any vlen string in type (compound, array ...) */ - if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (data_class) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: variable length type not supported"); - if (isCriticalPinning) { PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not critically pinned"); @@ -940,6 +924,9 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double(JNIEnv *env, jclass clss, jlong dataset_id, done: if (writeBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf); + if (isCriticalPinning) { UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0); } @@ -1094,13 +1081,445 @@ done: /* * Class: hdf_hdf5lib_H5 * Method: H5DreadVL - * Signature: (JJJJJ[Ljava/lang/String;)I + * Signature: (JJJJJ[java/util/ArrayList;)I */ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) { H5T_class_t type_class; + jsize n; + htri_t vl_data_class; + herr_t status = FAIL; + jboolean readBufIsCopy; + jbyteArray *readBuf = NULL; + + UNUSED(clss); + + if (NULL == buf) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DreadVL: read buffer is NULL"); + + /* Get size of data array */ + if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DreadVL: readBuf length < 0"); + } + + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (type_class == H5T_VLEN) { + size_t typeSize; + hid_t memb = H5I_INVALID_HID; + H5T_class_t vlClass; + size_t vlSize; + void * rawBuf = NULL; + jobject * jList = NULL; + + size_t i, j, x; + char * cp_vp = NULL; + + if (!(typeSize = H5Tget_size(mem_type_id))) + H5_LIBRARY_ERROR(ENVONLY); + + if (!(memb = H5Tget_super(mem_type_id))) + H5_LIBRARY_ERROR(ENVONLY); + if ((vlClass = H5Tget_class((hid_t)memb)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (!(vlSize = H5Tget_size(memb))) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (rawBuf = HDcalloc((size_t)n, typeSize))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL: failed to allocate raw VL read buffer"); + + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, (void *)rawBuf)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + /* Cache class types */ + jclass cBool = ENVPTR->FindClass(ENVONLY, "java/lang/Boolean"); + jclass cByte = ENVPTR->FindClass(ENVONLY, "java/lang/Byte"); + jclass cShort = ENVPTR->FindClass(ENVONLY, "java/lang/Short"); + jclass cInt = ENVPTR->FindClass(ENVONLY, "java/lang/Integer"); + jclass cLong = ENVPTR->FindClass(ENVONLY, "java/lang/Long"); + jclass cFloat = ENVPTR->FindClass(ENVONLY, "java/lang/Float"); + jclass cDouble = ENVPTR->FindClass(ENVONLY, "java/lang/Double"); + + jmethodID boolValueMid = + ENVPTR->GetStaticMethodID(ENVONLY, cBool, "valueOf", "(Z)Ljava/lang/Boolean;"); + jmethodID byteValueMid = ENVPTR->GetStaticMethodID(ENVONLY, cByte, "valueOf", "(B)Ljava/lang/Byte;"); + jmethodID shortValueMid = + ENVPTR->GetStaticMethodID(ENVONLY, cShort, "valueOf", "(S)Ljava/lang/Short;"); + jmethodID intValueMid = ENVPTR->GetStaticMethodID(ENVONLY, cInt, "valueOf", "(I)Ljava/lang/Integer;"); + jmethodID longValueMid = ENVPTR->GetStaticMethodID(ENVONLY, cLong, "valueOf", "(J)Ljava/lang/Long;"); + jmethodID floatValueMid = + ENVPTR->GetStaticMethodID(ENVONLY, cFloat, "valueOf", "(F)Ljava/lang/Float;"); + jmethodID doubleValueMid = + ENVPTR->GetStaticMethodID(ENVONLY, cDouble, "valueOf", "(D)Ljava/lang/Double;"); + + // retrieve the java.util.List interface class + jclass cList = ENVPTR->FindClass(ENVONLY, "java/util/List"); + jmethodID addMethod = ENVPTR->GetMethodID(ENVONLY, cList, "add", "(Ljava/lang/Object;)Z"); + + /* Convert each element to a list */ + for (i = 0; i < (size_t)n; i++) { + // The list we're going to return: + if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize)i))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + cp_vp = (char *)rawBuf + i * typeSize; + /* Get the number of sequence elements */ + jsize nelmts = ((hvl_t *)cp_vp)->len; + + jobject jobj = NULL; + for (j = 0; j < nelmts; j++) { + switch (vlClass) { + /*case H5T_BOOL: { + jboolean boolValue; + for (x = 0; x < (int)vlSize; x++) { + ((char *)&boolValue)[x] = ((char *)((hvl_t *)cp_vp)->p)[j*vlSize+x]; + } + + jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cBool, boolValueMid, boolValue); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + } */ + case H5T_INTEGER: { + switch (vlSize) { + case sizeof(jbyte): { + jbyte byteValue; + for (x = 0; x < (int)vlSize; x++) { + ((char *)&byteValue)[x] = ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x]; + } + + jobj = + ENVPTR->CallStaticObjectMethod(ENVONLY, cByte, byteValueMid, byteValue); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + } + case sizeof(jshort): { + jshort shortValue; + for (x = 0; x < (int)vlSize; x++) { + ((char *)&shortValue)[x] = ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x]; + } + + jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cShort, shortValueMid, + shortValue); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + } + case sizeof(jint): { + jint intValue; + for (x = 0; x < (int)vlSize; x++) { + ((char *)&intValue)[x] = ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x]; + } + + jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cInt, intValueMid, intValue); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + } + case sizeof(jlong): { + jlong longValue; + for (x = 0; x < (int)vlSize; x++) { + ((char *)&longValue)[x] = ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x]; + } + + jobj = + ENVPTR->CallStaticObjectMethod(ENVONLY, cLong, longValueMid, longValue); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + } + } + break; + } + case H5T_FLOAT: { + switch (vlSize) { + case sizeof(jfloat): { + jfloat floatValue; + for (x = 0; x < (int)vlSize; x++) { + ((char *)&floatValue)[x] = ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x]; + } + + jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cFloat, floatValueMid, + floatValue); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + } + case sizeof(jdouble): { + jdouble doubleValue; + for (x = 0; x < (int)vlSize; x++) { + ((char *)&doubleValue)[x] = ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x]; + } + + jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cDouble, doubleValueMid, + doubleValue); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + } + } + break; + } + case H5T_REFERENCE: { + jboolean bb; + jbyte * barray = NULL; + if (NULL == (jobj = ENVPTR->NewByteArray(ENVONLY, vlSize))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + PIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, &bb, + "readVL reference: byte array not pinned"); + + for (x = 0; x < (int)vlSize; x++) { + barray[x] = ((jbyte *)((hvl_t *)cp_vp)->p)[j * vlSize + x]; + } + if (barray) + UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, jobj ? 0 : JNI_ABORT); + break; + } + default: + H5_UNIMPLEMENTED(ENVONLY, "H5DreadVL: invalid class type"); + break; + } + + // Add it to the list + ENVPTR->CallBooleanMethod(ENVONLY, jList, addMethod, jobj); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + } /* end for */ + + if (rawBuf) + HDfree(rawBuf); + } + else { + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, (void *)readBuf)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + +done: + if (readBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf); + + UNPIN_BYTE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0); + } + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5DreadVL */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5DwriteVL + * Signature: (JJJJJ[java/util/ArrayList;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +{ + H5T_class_t type_class; + jsize n; + htri_t vl_data_class; + herr_t status = FAIL; + jboolean writeBufIsCopy; + jbyteArray *writeBuf = NULL; + + UNUSED(clss); + + if (NULL == buf) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL: write buffer is NULL"); + + /* Get size of data array */ + if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL: readBuf length < 0"); + } + + if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (type_class == H5T_VLEN) { + size_t typeSize; + hid_t memb = H5I_INVALID_HID; + H5T_class_t vlClass; + size_t vlSize; + void * rawBuf = NULL; + jobject * jList = NULL; + + size_t i, j, x; + char * cp_vp = NULL; + + if (!(typeSize = H5Tget_size(mem_type_id))) + H5_LIBRARY_ERROR(ENVONLY); + + if (!(memb = H5Tget_super(mem_type_id))) + H5_LIBRARY_ERROR(ENVONLY); + if ((vlClass = H5Tget_class((hid_t)memb)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (!(vlSize = H5Tget_size(memb))) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (rawBuf = HDcalloc((size_t)n, typeSize))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DwriteVL: failed to allocate raw VL write buffer"); + + /* Cache class types */ + jclass cBool = ENVPTR->FindClass(ENVONLY, "java/lang/Boolean"); + jclass cByte = ENVPTR->FindClass(ENVONLY, "java/lang/Byte"); + jclass cShort = ENVPTR->FindClass(ENVONLY, "java/lang/Short"); + jclass cInt = ENVPTR->FindClass(ENVONLY, "java/lang/Integer"); + jclass cLong = ENVPTR->FindClass(ENVONLY, "java/lang/Long"); + jclass cFloat = ENVPTR->FindClass(ENVONLY, "java/lang/Float"); + jclass cDouble = ENVPTR->FindClass(ENVONLY, "java/lang/Double"); + + jmethodID boolValueMid = ENVPTR->GetMethodID(ENVONLY, cBool, "booleanValue", "()Z"); + jmethodID byteValueMid = ENVPTR->GetMethodID(ENVONLY, cByte, "byteValue", "()B"); + jmethodID shortValueMid = ENVPTR->GetMethodID(ENVONLY, cShort, "shortValue", "()S"); + jmethodID intValueMid = ENVPTR->GetMethodID(ENVONLY, cInt, "intValue", "()I"); + jmethodID longValueMid = ENVPTR->GetMethodID(ENVONLY, cLong, "longValue", "()J"); + jmethodID floatValueMid = ENVPTR->GetMethodID(ENVONLY, cFloat, "floatValue", "()F"); + jmethodID doubleValueMid = ENVPTR->GetMethodID(ENVONLY, cDouble, "doubleValue", "()D"); + + /* Convert each list to a vlen element */ + for (i = 0; i < (size_t)n; i++) { + if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize)i))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + // retrieve the java.util.List interface class + jclass cList = ENVPTR->FindClass(ENVONLY, "java/util/List"); + + // retrieve the toArray method and invoke it + jmethodID mToArray = ENVPTR->GetMethodID(ENVONLY, cList, "toArray", "()[Ljava/lang/Object;"); + if (mToArray == NULL) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + jobjectArray array = (jobjectArray)ENVPTR->CallObjectMethod(ENVONLY, jList, mToArray); + jsize jnelmts = ENVPTR->GetArrayLength(ENVONLY, array); + + cp_vp = (char *)rawBuf + i * typeSize; + ((hvl_t *)cp_vp)->len = jnelmts; + + if (NULL == (((hvl_t *)cp_vp)->p = HDmalloc(jnelmts * vlSize))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DwriteVL: failed to allocate vlen ptr buffer"); + jobject jobj = NULL; + for (j = 0; j < (int)jnelmts; j++) { + if (NULL == (jobj = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)array, (jsize)j))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + switch (vlClass) { + /* case H5T_BOOL: { + jboolean boolValue = ENVPTR->CallBooleanMethod(ENVONLY, jobj, boolValueMid); + for (x = 0; x < (int)vlSize; x++) { + ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x] = ((char *)&boolValue)[x]; + } + break; + } */ + case H5T_INTEGER: { + switch (vlSize) { + case sizeof(jbyte): { + jbyte byteValue = ENVPTR->CallByteMethod(ENVONLY, jobj, byteValueMid); + for (x = 0; x < (int)vlSize; x++) { + ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x] = ((char *)&byteValue)[x]; + } + break; + } + case sizeof(jshort): { + jshort shortValue = ENVPTR->CallShortMethod(ENVONLY, jobj, shortValueMid); + for (x = 0; x < (int)vlSize; x++) { + ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x] = ((char *)&shortValue)[x]; + } + break; + } + case sizeof(jint): { + jint intValue = ENVPTR->CallIntMethod(ENVONLY, jobj, intValueMid); + for (x = 0; x < (int)vlSize; x++) { + ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x] = ((char *)&intValue)[x]; + } + break; + } + case sizeof(jlong): { + jlong longValue = ENVPTR->CallLongMethod(ENVONLY, jobj, longValueMid); + for (x = 0; x < (int)vlSize; x++) { + ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x] = ((char *)&longValue)[x]; + } + break; + } + } + break; + } + case H5T_FLOAT: { + switch (vlSize) { + case sizeof(jfloat): { + jfloat floatValue = ENVPTR->CallFloatMethod(ENVONLY, jobj, floatValueMid); + for (x = 0; x < (int)vlSize; x++) { + ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x] = ((char *)&floatValue)[x]; + } + break; + } + case sizeof(jdouble): { + jdouble doubleValue = ENVPTR->CallDoubleMethod(ENVONLY, jobj, doubleValueMid); + for (x = 0; x < (int)vlSize; x++) { + ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x] = ((char *)&doubleValue)[x]; + } + break; + } + } + break; + } + case H5T_REFERENCE: { + jbyte *barray = (jbyte *)ENVPTR->GetByteArrayElements(ENVONLY, jobj, 0); + for (x = 0; x < (int)vlSize; x++) { + ((char *)((hvl_t *)cp_vp)->p)[j * vlSize + x] = ((char *)barray)[x]; + } + ENVPTR->ReleaseByteArrayElements(ENVONLY, jobj, barray, 0); + break; + } + default: + H5_UNIMPLEMENTED(ENVONLY, "H5DwriteVL: invalid class type"); + break; + } + ENVPTR->DeleteLocalRef(ENVONLY, jobj); + } + ENVPTR->DeleteLocalRef(ENVONLY, jList); + } /* end for (i = 0; i < n; i++) */ + + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, rawBuf)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if (rawBuf) + HDfree(rawBuf); + } + else { + PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5DwriteVL: write buffer not pinned"); + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + +done: + if (writeBuf) { + if ((status >= 0) && vl_data_class) + H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf); + + if (type_class != H5T_VLEN) + UNPIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0); + } + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5DwriteVL */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Dread_VLStrings + * Signature: (JJJJJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Dread_1VLStrings(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jobjectArray buf) +{ + H5T_class_t type_class; htri_t isStr = 0; htri_t isVlenStr = 0; htri_t isComplex = 0; @@ -1111,7 +1530,7 @@ Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong UNUSED(clss); if (NULL == buf) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DreadVL: read buffer is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DreadVLStrings: read buffer is NULL"); if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1163,7 +1582,7 @@ done: H5Tclose(nested_tid); return (jint)status; -} /* end Java_hdf_hdf5lib_H5_H5Dread_1VL */ +} /* end Java_hdf_hdf5lib_H5_H5Dread_1VLStrings */ /* * Helper method to read in a buffer of variable-length strings from an HDF5 @@ -1315,54 +1734,15 @@ done: return status; } -/** - * Read VLEN data into array of arrays. - * Object[] buf contains VL arrays of data points - * Currently only deal with variable length of atomic data types - */ -/* old version */ - -/* - * Class: hdf_hdf5lib_H5 - * Method: H5Dread_VLStrings - * Signature: (JJJJJ[Ljava/lang/String;)I - */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1VLStrings(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, - jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, - jobjectArray buf) -{ - htri_t isVlenStr = 0; - herr_t status = FAIL; - - UNUSED(clss); - - if (NULL == buf) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_VLStrings: read buffer is NULL"); - - if ((isVlenStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (isVlenStr) { - if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - } - else - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_VLStrings: datatype is not variable length String"); - -done: - return (jint)status; -} /* end Java_hdf_hdf5lib_H5_H5Dread_1VLStrings */ - /* * Class: hdf_hdf5lib_H5 - * Method: H5DwriteVL + * Method: H5Dwrite_VLStrings * Signature: (JJJJJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, - jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jobjectArray buf) { H5T_class_t type_class; htri_t isStr = 0; @@ -1375,7 +1755,7 @@ Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong UNUSED(clss); if (NULL == buf) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL: write buffer is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DwriteVLStrings: write buffer is NULL"); if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1427,7 +1807,7 @@ done: H5Tclose(nested_tid); return (jint)status; -} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VL */ +} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings */ /* * Helper method to convert an array of Java strings into a buffer of C-strings. @@ -1440,7 +1820,7 @@ H5DwriteVL_str(JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space const char *utf8 = NULL; jstring obj; jsize size; - jsize i; + jint i; char ** writeBuf = NULL; herr_t status = FAIL; @@ -1512,7 +1892,7 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si jobjectArray buf) { const char *utf8 = NULL; - jstring obj = NULL; + jstring jstr = NULL; hbool_t close_mem_space = FALSE; size_t typeSize; size_t i; @@ -1549,7 +1929,7 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); for (i = 0; i < (size_t)n; ++i) { - if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize)i))) { + if (NULL == (jstr = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -1560,11 +1940,11 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si } /* - * length = ENVPTR->GetStringUTFLength(ENVONLY, obj); + * length = ENVPTR->GetStringUTFLength(ENVONLY, jstr); * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); */ - PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_asstr: failed to pin string buffer"); + PIN_JAVA_STRING(ENVONLY, jstr, utf8, NULL, "H5DwriteVL_asstr: failed to pin string buffer"); /* * TODO: If the string isn't a copy, we should probably make @@ -1574,10 +1954,10 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si if (!h5str_convert(ENVONLY, (char **)&utf8, did, tid, &(((char *)writeBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - UNPIN_JAVA_STRING(ENVONLY, obj, utf8); + UNPIN_JAVA_STRING(ENVONLY, jstr, utf8); utf8 = NULL; - ENVPTR->DeleteLocalRef(ENVONLY, obj); + ENVPTR->DeleteLocalRef(ENVONLY, jstr); } /* end for (i = 0; i < size; ++i) */ if ((status = H5Dwrite(did, tid, mem_sid, file_sid, xfer_plist_id, writeBuf)) < 0) @@ -1585,7 +1965,7 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si done: if (utf8) - UNPIN_JAVA_STRING(ENVONLY, obj, utf8); + UNPIN_JAVA_STRING(ENVONLY, jstr, utf8); if (writeBuf) { H5Treclaim(tid, mem_space, xfer_plist_id, writeBuf); HDfree(writeBuf); @@ -1598,39 +1978,6 @@ done: /* * Class: hdf_hdf5lib_H5 - * Method: H5Dwrite_VLStrings - * Signature: (JJJJJ[Ljava/lang/String;)I - */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, - jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, - jobjectArray buf) -{ - htri_t isVlenStr = 0; - herr_t status = FAIL; - - UNUSED(clss); - - if (NULL == buf) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_VLStrings: write buffer is NULL"); - - if ((isVlenStr = H5Tis_variable_str((hid_t)mem_type_id)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (isVlenStr) { - if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - } /* end if */ - else - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_VLStrings: datatype is not variable length String"); - -done: - return (jint)status; -} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings */ - -/* - * Class: hdf_hdf5lib_H5 * Method: H5Dread_reg_ref * Signature: (JJJJJ[Ljava/lang/String;)I */ |