Merge pull request #826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop

* commit 'e94ed99c5bf7c4ae5df56f75606ef1b486e16bb2':
  Add HD prefix
  HDFFV-9724 Remove VDS file cache functionality
  Removed incorrect MPI text
  Par example needs to link with mpi libs
  Because of MPI requirements in library ALWAYS add include path
  Cleanup comments and if() in TRY blocks
  Skip test if 1.6 API
  HDFFV-9724 Add ENV VAR to vds test
  HDFFV-9724 Copy efc_open search from Lextern_traverse
  Add prefix dir to the clear command
  HDFFV-9724 Add H5LS prefix test with ${ORIGIN}
  Add h5dump VDS prefix tests
  HDFFV-9724 combine efc and vds into one function
  Correct var name
  Fix VDS file cache var names
  Remove return from void functions
  Added java wrappers and tests
  HDFFV-9724 Initial changes and test
  Changed reference from dl to CMake variable
  H5detect and H5make_libsettings need include folder

1 files changed, 211 insertions, 0 deletions

diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c
index dcfcd82..cf27341 100644
--- a/java/src/jni/h5pImp.c
+++ b/java/src/jni/h5pImp.c
@@ -5733,6 +5733,217 @@ Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
      } /* end else */
 } /* end Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts */
 
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Pset_virtual_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
+    (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
+{
+    herr_t      retVal = -1;
+    const char *aName;
+
+    PIN_JAVA_STRING(prefix, aName);
+    if (aName != NULL) {
+        retVal = H5Pset_virtual_prefix((hid_t)dapl_id, aName);
+
+        UNPIN_JAVA_STRING(prefix, aName);
+
+        if(retVal < 0)
+            h5libraryError(env);
+    }
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Pget_virtual_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
+    (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+    size_t  size = 0;
+    char   *pre;
+    jlong   prefix_size = -1;
+    jstring str = NULL;
+
+    prefix_size = (jlong)H5Pget_virtual_prefix((hid_t)dapl_id, (char*)NULL, size);
+    if(prefix_size < 0) {
+        h5libraryError(env);
+    } /* end if */
+    else {
+        size = (size_t)prefix_size + 1;/* add extra space for the null terminator */
+        pre = (char*)HDmalloc(sizeof(char)*size);
+        if (pre == NULL) {
+            h5outOfMemory(env, "H5Pget_virtual_prefix:  malloc failed ");
+        } /* end if */
+        else {
+            prefix_size = (jlong)H5Pget_virtual_prefix((hid_t)dapl_id, (char*)pre, size);
+
+            if (prefix_size >= 0) {
+                str = ENVPTR->NewStringUTF(ENVPAR pre);
+                HDfree(pre);
+                if (str == NULL)
+                    h5JNIFatalError( env, "H5Pget_virtual_prefix:  return string not allocated");
+            } /* end if */
+            else {
+                HDfree(pre);
+                h5libraryError(env);
+            } /* end else */
+        } /* end else */
+    } /* end else */
+
+    return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Pset_efile_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
+    (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
+{
+    herr_t      retVal = -1;
+    const char *aName;
+
+    PIN_JAVA_STRING(prefix, aName);
+    if (aName != NULL) {
+        retVal = H5Pset_efile_prefix((hid_t)dapl_id, aName);
+
+        UNPIN_JAVA_STRING(prefix, aName);
+
+        if(retVal < 0)
+            h5libraryError(env);
+    }
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Pget_efile_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
+    (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+    size_t  size = 0;
+    char   *pre;
+    jlong   prefix_size = -1;
+    jstring str = NULL;
+
+    prefix_size = (jlong)H5Pget_efile_prefix((hid_t)dapl_id, (char*)NULL, size);
+    if(prefix_size < 0) {
+        h5libraryError(env);
+    } /* end if */
+    else {
+        size = (size_t)prefix_size + 1;/* add extra space for the null terminator */
+        pre = (char*)HDmalloc(sizeof(char)*size);
+        if (pre == NULL) {
+            h5outOfMemory(env, "H5Pget_efile_prefix:  malloc failed ");
+        } /* end if */
+        else {
+            prefix_size = (jlong)H5Pget_efile_prefix((hid_t)dapl_id, (char*)pre, size);
+
+            if (prefix_size >= 0) {
+                str = ENVPTR->NewStringUTF(ENVPAR pre);
+                HDfree(pre);
+                if (str == NULL)
+                    h5JNIFatalError( env, "H5Pget_efile_prefix:  return string not allocated");
+            } /* end if */
+            else {
+                HDfree(pre);
+                h5libraryError(env);
+            } /* end else */
+        } /* end else */
+    } /* end else */
+
+    return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Pset_evict_on_close
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
+    (JNIEnv *env, jclass clss, jlong fapl_id, jboolean evict_on_close)
+{
+    herr_t   retVal = -1;
+    hbool_t  evict_on_close_val;
+
+    if (evict_on_close == JNI_TRUE)
+        evict_on_close_val = TRUE;
+    else
+        evict_on_close_val = FALSE;
+
+    retVal = H5Pset_evict_on_close((hid_t)fapl_id, (hbool_t)evict_on_close_val);
+    if (retVal < 0)
+        h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Pget_evict_on_close
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
+    (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+    hbool_t   evict_on_close_val = FALSE;
+    jboolean  bval = JNI_FALSE;
+
+    if (H5Pget_evict_on_close((hid_t)fapl_id, (hbool_t *)&evict_on_close_val) < 0) {
+        h5libraryError(env);
+    } /* end if */
+    else {
+        if (evict_on_close_val == TRUE)
+            bval =  JNI_TRUE;
+    } /* end else */
+
+    return bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Pset_chunk_opts
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
+    (JNIEnv *env, jclass clss, jlong dcpl_id, jint opts)
+{
+    herr_t   retVal = -1;
+
+    retVal = H5Pset_chunk_opts((hid_t)dcpl_id, (unsigned)opts);
+    if (retVal < 0)
+        h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Pget_chunk_opts
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
+    (JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+    unsigned   opts = 0;
+
+    if (H5Pget_chunk_opts((hid_t)dcpl_id, opts) < 0)
+        h5libraryError(env);
+
+    return (jint)opts;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts */
+
 #ifdef __cplusplus
 } /* end extern "C" */
 #endif /* __cplusplus */