summaryrefslogtreecommitdiffstats
path: root/java/src/jni
diff options
context:
space:
mode:
authorJordan Henderson <jhenderson@hdfgroup.org>2019-02-11 16:58:58 (GMT)
committerJordan Henderson <jhenderson@hdfgroup.org>2019-02-11 16:58:58 (GMT)
commitcc6a61215e508d047ed6aa2daf67475cfe34ee4d (patch)
tree01ff3ca929838ede9e5eba30dfcc3881f2e9523f /java/src/jni
parent4300ca623482508d19caf427fdadce86f811e347 (diff)
downloadhdf5-cc6a61215e508d047ed6aa2daf67475cfe34ee4d.zip
hdf5-cc6a61215e508d047ed6aa2daf67475cfe34ee4d.tar.gz
hdf5-cc6a61215e508d047ed6aa2daf67475cfe34ee4d.tar.bz2
Re-write of Java JNI error handling
Diffstat (limited to 'java/src/jni')
-rw-r--r--java/src/jni/CMakeLists.txt26
-rw-r--r--java/src/jni/Makefile.am5
-rw-r--r--java/src/jni/exceptionImp.c206
-rw-r--r--java/src/jni/h5Constants.c2
-rw-r--r--java/src/jni/h5Imp.c110
-rw-r--r--java/src/jni/h5aImp.c2710
-rw-r--r--java/src/jni/h5dImp.c2566
-rw-r--r--java/src/jni/h5eImp.c583
-rw-r--r--java/src/jni/h5fImp.c585
-rw-r--r--java/src/jni/h5fImp.h2
-rw-r--r--java/src/jni/h5gImp.c224
-rw-r--r--java/src/jni/h5iImp.c233
-rw-r--r--java/src/jni/h5jni.h382
-rw-r--r--java/src/jni/h5lImp.c869
-rw-r--r--java/src/jni/h5oImp.c936
-rw-r--r--java/src/jni/h5pACPLImp.c36
-rw-r--r--java/src/jni/h5pACPLImp.h27
-rw-r--r--java/src/jni/h5pDAPLImp.c322
-rw-r--r--java/src/jni/h5pDAPLImp.h112
-rw-r--r--java/src/jni/h5pDCPLImp.c1404
-rw-r--r--java/src/jni/h5pDCPLImp.h396
-rw-r--r--java/src/jni/h5pDXPLImp.c502
-rw-r--r--java/src/jni/h5pDXPLImp.h209
-rw-r--r--java/src/jni/h5pFAPLImp.c1624
-rw-r--r--java/src/jni/h5pFAPLImp.h501
-rw-r--r--java/src/jni/h5pFCPLImp.c572
-rw-r--r--java/src/jni/h5pFCPLImp.h207
-rw-r--r--java/src/jni/h5pGAPLImp.c36
-rw-r--r--java/src/jni/h5pGAPLImp.h27
-rw-r--r--java/src/jni/h5pGCPLImp.c227
-rw-r--r--java/src/jni/h5pGCPLImp.h99
-rw-r--r--java/src/jni/h5pImp.c6030
-rw-r--r--java/src/jni/h5pImp.h1462
-rw-r--r--java/src/jni/h5pLAPLImp.c237
-rw-r--r--java/src/jni/h5pLAPLImp.h107
-rw-r--r--java/src/jni/h5pLCPLImp.c36
-rw-r--r--java/src/jni/h5pLCPLImp.h27
-rw-r--r--java/src/jni/h5pOCPLImp.c211
-rw-r--r--java/src/jni/h5pOCPLImp.h99
-rw-r--r--java/src/jni/h5pOCpyPLImp.c92
-rw-r--r--java/src/jni/h5pOCpyPLImp.h61
-rw-r--r--java/src/jni/h5pStrCPLImp.c74
-rw-r--r--java/src/jni/h5pStrCPLImp.h45
-rw-r--r--java/src/jni/h5plImp.c177
-rw-r--r--java/src/jni/h5rImp.c399
-rw-r--r--java/src/jni/h5sImp.c1661
-rw-r--r--java/src/jni/h5tImp.c1444
-rw-r--r--java/src/jni/h5util.c4704
-rw-r--r--java/src/jni/h5util.h33
-rw-r--r--java/src/jni/h5vlImp.c148
-rw-r--r--java/src/jni/h5vlImp.h2
-rw-r--r--java/src/jni/h5zImp.c29
-rw-r--r--java/src/jni/nativeData.c1342
53 files changed, 18106 insertions, 16054 deletions
diff --git a/java/src/jni/CMakeLists.txt b/java/src/jni/CMakeLists.txt
index 00c2b34..42b4a48 100644
--- a/java/src/jni/CMakeLists.txt
+++ b/java/src/jni/CMakeLists.txt
@@ -14,6 +14,19 @@ set (HDF5_JAVA_JNI_CSRCS
${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pACPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDAPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDXPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFAPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGAPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLAPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCpyPLImp.c
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pStrCPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5plImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5rImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.c
@@ -36,6 +49,19 @@ set (HDF5_JAVA_JNI_CHDRS
${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pACPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDAPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDXPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFAPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGAPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLAPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCpyPLImp.h
+ ${HDF5_JAVA_JNI_SOURCE_DIR}/h5pStrCPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5plImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5rImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.h
diff --git a/java/src/jni/Makefile.am b/java/src/jni/Makefile.am
index 370b08b..1ec9b94 100644
--- a/java/src/jni/Makefile.am
+++ b/java/src/jni/Makefile.am
@@ -34,7 +34,10 @@ libhdf5_java_la_LDFLAGS = -avoid-version -shared -export-dynamic -version-info $
# Source files for the library
libhdf5_java_la_SOURCES=exceptionImp.c h5Constants.c nativeData.c h5util.c h5Imp.c \
h5aImp.c h5dImp.c h5eImp.c h5fImp.c h5gImp.c h5iImp.c h5lImp.c h5oImp.c \
- h5pImp.c h5plImp.c h5rImp.c h5sImp.c h5tImp.c h5vlImp.c h5zImp.c
+ h5pImp.c h5pACPLImp.c h5pDAPLImp.c h5pDCPLImp.c h5pDXPLImp.c \
+ h5pFAPLImp.c h5pFCPLImp.c h5pGAPLImp.c h5pGCPLImp.c h5pLAPLImp.c h5pLCPLImp.c \
+ h5pOCPLImp.c h5pOCpyPLImp.c h5pStrCPLImp.c h5plImp.c h5rImp.c h5sImp.c h5tImp.c \
+ h5vlImp.c h5zImp.c
# HDF5 Java (JNI) library depends on HDF5 Library.
libhdf5_java_la_LIBADD=$(LIBHDF5)
diff --git a/java/src/jni/exceptionImp.c b/java/src/jni/exceptionImp.c
index ccda0d2..0faa0cc 100644
--- a/java/src/jni/exceptionImp.c
+++ b/java/src/jni/exceptionImp.c
@@ -33,21 +33,14 @@ extern "C" {
#include "h5jni.h"
#include "exceptionImp.h"
-extern H5E_auto2_t efunc;
-extern void *edata;
+extern H5E_auto2_t efunc;
+extern void *edata;
/*******************/
/* Local Variables */
/*******************/
-/* These types are copied from H5Eprivate.h
- * They should be moved to a public include file, and deleted from
- * here.
- */
-
-#define H5E_NSLOTS 32 /*number of slots in an error stack */
-
/*
* The list of error messages in the system is kept as an array of
* error_code/message pairs, one for major error numbers and another for
@@ -73,29 +66,29 @@ typedef struct H5E_num_t {
/* Local Macros */
/********************/
-#define THROWEXCEPTION(className,args) { \
- jclass jc; \
- jmethodID jm; \
- jobject ex; \
- jc = ENVPTR->FindClass(ENVPAR (className)); \
- if (jc == NULL) { \
- return JNI_FALSE; \
- } \
- jm = ENVPTR->GetMethodID(ENVPAR jc, "<init>", "(Ljava/lang/String;)V"); \
- if (jm == NULL) { \
- printf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \
- return JNI_FALSE; \
- } \
- ex = ENVPTR->NewObjectA (ENVPAR jc, jm, (jvalue*)(args)); \
- if (ex == NULL) { \
- printf("THROWEXCEPTION FATAL ERROR: %s: Creation failed\n", (className)); \
- return JNI_FALSE; \
- } \
- if (ENVPTR->Throw(ENVPAR (jthrowable)ex) < 0) { \
- printf("THROWEXCEPTION FATAL ERROR: %s: Throw failed\n", (className)); \
- return JNI_FALSE; \
- } \
- return JNI_TRUE; \
+#define THROWEXCEPTION(className, args) \
+{ \
+ jmethodID jm; \
+ jclass jc; \
+ jobject ex; \
+ \
+ if (NULL == (jc = ENVPTR->FindClass(ENVONLY, (className)))) \
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
+ \
+ if (NULL == (jm = ENVPTR->GetMethodID(ENVONLY, jc, "<init>", "(Ljava/lang/String;)V"))) { \
+ HDprintf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
+ } \
+ \
+ if (NULL == (ex = ENVPTR->NewObjectA(ENVONLY, jc, jm, (jvalue *)(args)))) { \
+ HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Creation failed\n", (className)); \
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
+ } \
+ \
+ if (ENVPTR->Throw(ENVONLY, (jthrowable)ex) < 0) { \
+ HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Throw failed\n", (className)); \
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
+ } \
}
/********************/
@@ -112,7 +105,9 @@ walk_error_callback
{
H5E_num_t *err_nums = (H5E_num_t *)_err_nums;
- if(err_desc) {
+ UNUSED(n);
+
+ if (err_desc) {
err_nums->maj_num = err_desc->maj_num;
err_nums->min_num = err_desc->min_num;
} /* end if */
@@ -130,8 +125,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5error_1off
(JNIEnv *env, jclass clss)
{
- H5Eget_auto2(H5E_DEFAULT, &efunc, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
+ UNUSED(env);
+ UNUSED(clss);
+
+ if (H5Eget_auto2(H5E_DEFAULT, &efunc, &edata) < 0)
+ return -1;
+
+ if (H5Eset_auto2(H5E_DEFAULT, NULL, NULL) < 0)
+ return -1;
+
return 0;
} /* end Java_hdf_hdf5lib_H5_H5error_1off() */
@@ -145,10 +147,12 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5error_1on
(JNIEnv *env, jclass clss)
{
+ UNUSED(env);
+ UNUSED(clss);
+
H5Eset_auto2(H5E_DEFAULT, efunc, edata);
} /* end Java_hdf_hdf5lib_H5_H5error_1on() */
-
/*
* Class: hdf_hdf5lib_exceptions_HDFLibraryException
* Method: printStackTrace0
@@ -163,18 +167,25 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0
FILE *stream = NULL;
const char *file = NULL;
- if(file_name == NULL) {
+ UNUSED(obj);
+
+ if (NULL == file_name) {
H5Eprint2(H5E_DEFAULT, stderr);
- } /* end if */
+ }
else {
- file = ENVPTR->GetStringUTFChars(ENVPAR file_name, 0);
- stream = HDfopen(file, "a+");
- if(stream) {
+ PIN_JAVA_STRING(ENVONLY, file_name, file, NULL, "printStackTrace0: file name not pinned");
+
+ if ((stream = HDfopen(file, "a+"))) {
H5Eprint2(H5E_DEFAULT, stream);
HDfclose(stream);
- } /* end if */
- ENVPTR->ReleaseStringUTFChars(ENVPAR file_name, file);
- } /* end else */
+ }
+ }
+
+done:
+ if (file)
+ UNPIN_JAVA_STRING(ENVONLY, file_name, file);
+
+ return;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0() */
/*
@@ -189,10 +200,15 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber
(JNIEnv *env, jobject obj)
{
H5E_num_t err_nums;
+
+ UNUSED(env);
+ UNUSED(obj);
+
err_nums.maj_num = 0;
err_nums.min_num = 0;
- H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums);
+ if (H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums) < 0)
+ return -1;
return err_nums.maj_num;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber() */
@@ -209,27 +225,42 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber
(JNIEnv *env, jobject obj)
{
H5E_num_t err_nums;
+
+ UNUSED(env);
+ UNUSED(obj);
+
err_nums.maj_num = 0;
err_nums.min_num = 0;
- H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums);
+ if (H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums) < 0)
+ return -1;
return err_nums.min_num;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber() */
/*
- * Routine to raise particular Java exceptions from C
+ * Routine to raise particular Java exceptions from C.
*/
static jboolean
H5JNIErrorClass
(JNIEnv *env, const char *message, const char *className)
{
- char *args[2];
- jstring str = ENVPTR->NewStringUTF(ENVPAR message);
- args[0] = (char *)str;
+ jstring str;
+ char *args[2];
+ jboolean retVal = JNI_FALSE;
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, message)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ args[0] = (char *) str;
args[1] = 0;
THROWEXCEPTION(className, args);
+
+ retVal = JNI_TRUE;
+
+done:
+ return retVal;
} /* end H5JNIErrorClass() */
/*
@@ -316,7 +347,7 @@ h5unimplemented
*/
jboolean
h5raiseException
- (JNIEnv *env, const char *exception, const char *message)
+ (JNIEnv *env, const char *message, const char *exception)
{
return H5JNIErrorClass(env, message, exception);
} /* end h5raiseException() */
@@ -336,51 +367,76 @@ jboolean
h5libraryError
(JNIEnv *env)
{
- char *args[2];
const char *exception = NULL;
- char *msg_str = NULL;
- int num_errs = 0;
- hid_t min_num;
- hid_t maj_num;
- ssize_t msg_size = 0;
H5E_type_t error_msg_type;
- jstring str = NULL;
- hid_t stk_id = -1;
H5E_num_t exceptionNumbers;
+ jstring str = NULL;
+ ssize_t msg_size = 0;
+ hid_t min_num;
+ hid_t maj_num;
+ hid_t stk_id = H5I_INVALID_HID;
+ char *args[2];
+ char *msg_str = NULL;
+ jboolean retVal = JNI_FALSE;
exceptionNumbers.maj_num = 0;
exceptionNumbers.min_num = 0;
/* Save current stack contents for future use */
- stk_id = H5Eget_current_stack(); /* This will clear current stack */
- if(stk_id >= 0)
- H5Ewalk2(stk_id, H5E_WALK_DOWNWARD, walk_error_callback, &exceptionNumbers);
+ if ((stk_id = H5Eget_current_stack()) >= 0)
+ /* This will clear current stack */
+ if (H5Ewalk2(stk_id, H5E_WALK_DOWNWARD, walk_error_callback, &exceptionNumbers) < 0)
+ goto done;
+
maj_num = exceptionNumbers.maj_num;
min_num = exceptionNumbers.min_num;
+ /*
+ * TODO: handle < 0 case.
+ */
+
+ /*
+ * No error detected in HDF5 error stack.
+ */
+ if (!maj_num && !min_num)
+ goto done;
+
exception = defineHDF5LibraryException(maj_num);
/* get the length of the name */
- msg_size = H5Eget_msg(min_num, NULL, NULL, 0);
- if(msg_size > 0) {
- msg_size++; /* add extra space for the null terminator */
- msg_str = (char*)HDcalloc((size_t)msg_size, sizeof(char));
- if(msg_str) {
- msg_size = H5Eget_msg(min_num, &error_msg_type, (char *)msg_str, (size_t)msg_size);
- str = ENVPTR->NewStringUTF(ENVPAR msg_str);
- HDfree(msg_str);
- } /* end if */
- } /* end if */
+ if ((msg_size = H5Eget_msg(min_num, NULL, NULL, 0)) < 0)
+ goto done;
+
+ if (msg_size > 0) {
+ if (NULL == (msg_str = (char *) HDcalloc((size_t)msg_size + 1, sizeof(char))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5libraryerror: failed to allocate buffer for error message");
+
+ if ((msg_size = H5Eget_msg(min_num, &error_msg_type, msg_str, (size_t)msg_size + 1)) < 0)
+ goto done;
+ msg_str[msg_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, msg_str)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
else
str = NULL;
- if(stk_id >= 0)
+
+ if (stk_id >= 0)
H5Eset_current_stack(stk_id);
- args[0] = (char *)str;
+ args[0] = (char *) str;
args[1] = 0;
+
THROWEXCEPTION(exception, args);
-} /* end h5libraryError() */
+ retVal = JNI_TRUE;
+
+done:
+ if (msg_str)
+ HDfree(msg_str);
+
+ return retVal;
+} /* end h5libraryError() */
/*
* defineHDF5LibraryException() returns the name of the sub-class
diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c
index e88fa55..2ac0892 100644
--- a/java/src/jni/h5Constants.c
+++ b/java/src/jni/h5Constants.c
@@ -1260,7 +1260,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1THREADSAFE(JNIEnv *env, jclass c
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE(JNIEnv *env, jclass cls) { return H5VL_NATIVE; }
JNIEXPORT jobject JNICALL
-Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) { return (jstring)ENVPTR->NewStringUTF(ENVPAR H5VL_NATIVE_NAME); }
+Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) { return (jstring)ENVPTR->NewStringUTF(ENVONLY, H5VL_NATIVE_NAME); }
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VALUE(JNIEnv *env, jclass cls) { return H5VL_NATIVE_VALUE; }
JNIEXPORT jint JNICALL
diff --git a/java/src/jni/h5Imp.c b/java/src/jni/h5Imp.c
index 1ad6b17..99c91fd 100644
--- a/java/src/jni/h5Imp.c
+++ b/java/src/jni/h5Imp.c
@@ -35,7 +35,10 @@ extern "C" {
#include "h5jni.h"
#include "h5Imp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -46,10 +49,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5open
(JNIEnv *env, jclass clss)
{
- herr_t retVal = H5open();
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+ if ((retVal = H5open()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5open */
@@ -62,10 +69,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5close
(JNIEnv *env, jclass clss)
{
- herr_t retVal = H5close();
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5close()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5close */
@@ -78,10 +89,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5dont_1atexit
(JNIEnv *env, jclass clss)
{
- herr_t retVal = H5dont_atexit();
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+ UNUSED(clss);
+
+ if ((retVal = H5dont_atexit()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5dont_1atexit */
@@ -94,29 +109,25 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5get_1libversion
(JNIEnv *env, jclass clss, jintArray libversion)
{
- unsigned *theArray = NULL;
- herr_t status = -1;
- jboolean isCopy;
-
- if (libversion == NULL) {
- h5nullArgument(env, "H5get_version: libversion is NULL");
- } /* end if */
- else {
- theArray = (unsigned*)ENVPTR->GetIntArrayElements(ENVPAR libversion, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError( env, "H5get_libversion: input not pinned");
- } /* end if */
- else {
- status = H5get_libversion(&(theArray[0]), &(theArray[1]), &(theArray[2]));
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR libversion, (jint*)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- ENVPTR->ReleaseIntArrayElements(ENVPAR libversion, (jint*)theArray,0);
- } /* end else */
- } /* end else */
- return (jint)status;
+ jboolean libversionArrayIsCopy;
+ int *libversionArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (libversion == NULL)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5get_libversion: libversion is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, libversion, libversionArray, &libversionArrayIsCopy, "H5get_libversion: libversion input not pinned");
+
+ if ((status = H5get_libversion((unsigned *) &(libversionArray[0]), (unsigned *) &(libversionArray[1]), (unsigned *) &(libversionArray[2]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (libversionArray)
+ UNPIN_INT_ARRAY(ENVONLY, libversion, libversionArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5get_1libversion */
/*
@@ -128,6 +139,9 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5check_1version
(JNIEnv *env, jclass clss, jint majnum, jint minnum, jint relnum)
{
+ UNUSED(env);
+ UNUSED(clss);
+
return (jint)H5check_version((unsigned)majnum, (unsigned)minnum, (unsigned)relnum);
} /* end Java_hdf_hdf5lib_H5_H5check_1version */
@@ -141,10 +155,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5garbage_1collect
(JNIEnv *env, jclass clss)
{
- herr_t retVal = H5garbage_collect();
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5garbage_collect()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5garbage_1collect */
@@ -158,11 +176,15 @@ Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits
(JNIEnv *env, jclass clss, jint reg_global_lim, jint reg_list_lim,
jint arr_global_lim, jint arr_list_lim, jint blk_global_lim, jint blk_list_lim )
{
- herr_t retVal = H5set_free_list_limits((int)reg_global_lim, (int)reg_list_lim,
- (int)arr_global_lim, (int)arr_list_lim, (int)blk_global_lim, (int)blk_list_lim);
- if (retVal < 0)
- h5libraryError(env);
+ herr_t retVal = FAIL;
+ UNUSED(clss);
+
+ if ((retVal = H5set_free_list_limits((int)reg_global_lim, (int)reg_list_lim,
+ (int)arr_global_lim, (int)arr_list_lim, (int)blk_global_lim, (int)blk_list_lim)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits */
@@ -176,7 +198,13 @@ Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe
(JNIEnv *env, jclass clss)
{
hbool_t is_ts = false;
- H5is_library_threadsafe(&is_ts);
+
+ UNUSED(clss);
+
+ if (H5is_library_threadsafe(&is_ts) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jboolean)is_ts;
} /* end Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe */
diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c
index e0ec4ca..666626f 100644
--- a/java/src/jni/h5aImp.c
+++ b/java/src/jni/h5aImp.c
@@ -21,13 +21,17 @@
extern "C" {
#endif /* __cplusplus */
-#include "hdf5.h"
-#include "h5util.h"
#include <jni.h>
#include <stdlib.h>
#include <string.h>
+#include "hdf5.h"
+#include "h5util.h"
+#include "h5jni.h"
#include "h5aImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -35,28 +39,14 @@ typedef struct _cb_wrapper {
jobject op_data;
} cb_wrapper;
-#ifdef __cplusplus
-#define CBENVPTR (cbenv)
-#define CBENVPAR
-#define JVMPTR (jvm)
-#define JVMPAR
-#define JVMPAR2
-#else
-#define CBENVPTR (*cbenv)
-#define CBENVPAR cbenv,
-#define JVMPTR (*jvm)
-#define JVMPAR jvm
-#define JVMPAR2 jvm,
-#endif
-
/********************/
/* Local Prototypes */
/********************/
-static herr_t H5AwriteVL_asstr (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
-static herr_t H5AwriteVL_str (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
-static herr_t H5AreadVL_asstr (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
-static herr_t H5AreadVL_str (JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
+static herr_t H5AwriteVL_asstr(JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
+static herr_t H5AwriteVL_str(JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
+static herr_t H5AreadVL_asstr(JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
+static herr_t H5AreadVL_str(JNIEnv *env, hid_t attr_id, hid_t mem_id, jobjectArray buf);
static herr_t H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data);
@@ -64,90 +54,6 @@ static herr_t H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *inf
/* Local Macros */
/********************/
-#define PIN_BYTE_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jbyte*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_BYTE_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_SHORT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jshort*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetShortArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_SHORT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseShortArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_INT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jint*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetIntArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_INT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseIntArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_LONG_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jlong*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetLongArrayElements(ENVPAR buf,&isCopy); \
-}
-
-#define UNPIN_LONG_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_FLOAT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jfloat*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetFloatArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_FLOAT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseFloatArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_DOUBLE_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jdouble*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetDoubleArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_DOUBLE_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR buf, buffP, mode); \
-}
-
/*
* Class: hdf_hdf5lib_H5
@@ -159,18 +65,22 @@ Java_hdf_hdf5lib_H5__1H5Acreate
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
jlong space_id, jlong create_plist)
{
- hid_t attr_id = -1;
- const char *aName;
+ const char *attrName = NULL;
+ hid_t attr_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- attr_id = H5Acreate2((hid_t)loc_id, aName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, (hid_t)H5P_DEFAULT);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Acreate: attribute name is NULL");
- if (attr_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Acreate: attribute name not pinned");
+
+ if ((attr_id = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, (hid_t)H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jlong)attr_id;
} /* end Java_hdf_hdf5lib_H5__1H5Acreate */
@@ -184,18 +94,22 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aopen_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
- hid_t attr_id = -1;
- const char *aName;
+ const char *attrName = NULL;
+ hid_t attr_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- attr_id = H5Aopen_name((hid_t)loc_id, aName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name,aName);
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aopen_name: attribute name is null");
- if (attr_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Aopen_name: attribute name not pinned");
+
+ if((attr_id = H5Aopen_name((hid_t)loc_id, attrName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jlong)attr_id;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1name */
@@ -209,39 +123,17 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aopen_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jint idx)
{
- hid_t attr_id = H5Aopen_idx((hid_t)loc_id, (unsigned int) idx);
+ hid_t attr_id = H5I_INVALID_HID;
- if (attr_id < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((attr_id = H5Aopen_idx((hid_t) loc_id, (unsigned int) idx)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)attr_id;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1idx */
-static htri_t
-H5Tdetect_variable_str
- (hid_t tid) {
- htri_t ret_val = 0;
-
- if (H5Tget_class(tid) == H5T_COMPOUND) {
- unsigned i;
- unsigned nm = (unsigned)H5Tget_nmembers(tid);
- for(i = 0; i < nm; i++) {
- htri_t status = 0;
- hid_t mtid = 0;
- if((mtid = H5Tget_member_type(tid, i)) < 0)
- return -1; /* exit immediately on error */
- if((status = H5Tdetect_variable_str(mtid)) < 0)
- return status; /* exit immediately on error */
- ret_val |= status;
- H5Tclose (mtid);
- } /* end for */
- } /* end if */
- else
- ret_val = H5Tis_variable_str(tid);
-
- return ret_val;
-} /* end H5Tdetect_variable_str */
-
/*
* Class: hdf_hdf5lib_H5
* Method: H5Aread
@@ -251,46 +143,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument( env,"H5Aread: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jbyte *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread: buf does not support variable length type");
- } /* end else if */
+ PIN_BYTE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_BYTE_ARRAY();
-
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
- if (status < 0) {
- UNPIN_BYTE_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_BYTE_ARRAY(0); /* update java buffer for return */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread */
@@ -304,43 +198,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument( env,"H5Awrite: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jbyte *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite: buf does not support variable length type");
- } /* end else if */
- else {
- PIN_BYTE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
+ PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite: write buffer not pinned");
+ }
- UNPIN_BYTE_ARRAY(JNI_ABORT); /* no need to update buffer */
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ else {
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite */
@@ -354,46 +253,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1short
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jshortArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jshort *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_short: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_short: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jshort *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_short: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_short: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_short: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_short: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_short: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_short: buf does not support variable length type");
- } /* end else if */
+ PIN_SHORT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_short: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_SHORT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_short: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_SHORT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_SHORT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_SHORT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1short */
@@ -407,43 +308,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1short
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jshortArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jshort *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL ) {
- h5nullArgument(env, "H5Awrite_short: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite_short: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_short: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jshort *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_short: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_short: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_short: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_short: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_short: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_short: buf does not support variable length type");
- } /* end else if */
- else {
- PIN_SHORT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_short: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
+ PIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_short: write buffer not pinned");
+ }
- UNPIN_SHORT_ARRAY(JNI_ABORT);
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ else {
+ UNPIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1short */
@@ -457,46 +363,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1int
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jint *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_int: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread_int: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_int: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jint *readBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (buf == NULL)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_int: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_int: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_int: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_int: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_int: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_int: buf does not support variable length type");
- } /* end else if */
+ PIN_INT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_int: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_INT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_int: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_INT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_INT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_INT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1int */
@@ -510,43 +418,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1int
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jint *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Awrite_int: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite_int: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_int: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jint *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (buf == NULL)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_int: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_int: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_int: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_int: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_int: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_int: buf does not support variable length type");
- } /* end else if */
- else {
- PIN_INT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_int: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
+ PIN_INT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_int: write buffer not pinned");
+ }
- UNPIN_INT_ARRAY(JNI_ABORT);
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ else {
+ UNPIN_INT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1int */
@@ -560,46 +473,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1long
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jlong *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_long: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread_long: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_long: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jlong *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_long: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_long: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_long: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_long: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_long: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_long: buf does not support variable length type");
- } /* end else if */
+ PIN_LONG_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_long: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_LONG_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_long: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_LONG_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_LONG_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_LONG_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1long */
@@ -613,42 +528,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1long
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jlong *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Awrite_long: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_long: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_long: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jlong *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_long: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_long: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_long: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_long: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_long: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_long: buf does not support variable length type");
- } /* end else if */
+ PIN_LONG_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_long: write buffer not pinned");
+ }
+
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_LONG_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_long: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- UNPIN_LONG_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_LONG_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1long */
@@ -662,46 +583,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1float
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jfloatArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jfloat *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_float: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_float: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_float: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jfloat *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_float: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_float: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_float: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_float: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_float: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_float: buf does not support variable length type");
- } /* end else if */
+ PIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_float: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_FLOAT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_float: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_FLOAT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_FLOAT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1float */
@@ -715,42 +638,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1float
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jfloatArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jfloat *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Awrite_float: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite_float: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_float: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jfloat *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_float: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_float: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_float: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_float: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_float: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_float: buf does not support variable length type");
- } /* end else if */
+ PIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_float: write buffer not pinned");
+ }
+
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_FLOAT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_float: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- UNPIN_FLOAT_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1float */
@@ -764,46 +693,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1double
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jdoubleArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jdouble *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Aread_double: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Aread_double: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_double: buf does not support variable length type");
- } /* end else if */
+ jboolean readBufIsCopy;
+ jdouble *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_double: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_double: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_double: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_double: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Aread_double: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Aread_double: buf does not support variable length type");
- } /* end else if */
+ PIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_double: read buffer not pinned");
+ }
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_DOUBLE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Aread_double: buf not pinned");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- if (status < 0) {
- UNPIN_DOUBLE_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_DOUBLE_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1double */
@@ -817,42 +748,48 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1double
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jdoubleArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jdouble *buffP;
- jboolean isCopy;
- htri_t data_class;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Awrite_double: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Awrite_double: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_double: buf does not support variable length type");
- } /* end else if */
+ jboolean writeBufIsCopy;
+ jdouble *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_double: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_double: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_double: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_double: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Awrite_double: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Awrite_double: buf does not support variable length type");
- } /* end else if */
+ PIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_double: write buffer not pinned");
+ }
+
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_DOUBLE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Awrite_double: buf not pinned");
- } /* end if */
- else {
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, buffP);
-
- UNPIN_DOUBLE_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1double */
@@ -866,67 +803,58 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1string
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray j_buf)
{
- herr_t status = -1;
- char *c_buf;
- char *cstr;
- size_t str_len;
- jsize i;
- jsize n;
- size_t pos;
- jstring jstr;
-
- c_buf = cstr = NULL;
- if (j_buf == NULL) {
- h5nullArgument(env, "H5Aread_string: buf is NULL");
- } /* end if */
- else if ((n = ENVPTR->GetArrayLength(ENVPAR j_buf)) <= 0) {
- h5nullArgument(env, "H5Aread_string: buf length <= 0");
- } /* end else if */
- else if ((str_len = H5Tget_size((hid_t)mem_type_id)) <=0) {
- h5libraryError(env);
- } /* end else if */
- else {
- if ((cstr = (char*)HDmalloc(str_len + 1)) == NULL) {
- h5JNIFatalError(env, "H5Aread_string: memory allocation failed.");
- } /* end if */
- else {
- if ((c_buf = (char*)HDmalloc((size_t)n * str_len)) == NULL) {
- if (cstr)
- HDfree(cstr);
- cstr = NULL;
- h5JNIFatalError(env, "H5Aread_string: memory allocation failed.");
- } /* end if */
- else {
- status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, c_buf);
-
- if (status < 0) {
- if (cstr)
- HDfree(cstr);
- cstr = NULL;
- if (c_buf)
- HDfree(c_buf);
- c_buf = NULL;
- h5libraryError(env);
- } /* end if */
- else {
- pos = 0;
- for (i = 0; i < n; i++) {
- HDmemcpy(cstr, c_buf+pos, str_len);
- cstr[str_len] = '\0';
- jstr = ENVPTR->NewStringUTF(ENVPAR cstr);
- ENVPTR->SetObjectArrayElement(ENVPAR j_buf, i, jstr);
- pos += str_len;
- } /* end for */
- } /* end else */
-
- if (c_buf)
- HDfree(c_buf);
- } /* end else cbuf allocation*/
-
- if (cstr)
- HDfree(cstr);
- } /* end else cstr allocation*/
- } /* end else */
+ jstring jstr;
+ size_t str_len;
+ size_t pos;
+ jsize i, n;
+ char *c_buf = NULL;
+ char *cstr = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == j_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread_string: read buffer is NULL");
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, j_buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_string: read buffer length <= 0");
+ }
+
+ if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (cstr = (char *) HDmalloc(str_len + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: memory allocation failed");
+
+ if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: memory allocation failed");
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, c_buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0, pos = 0; i < n; i++) {
+ HDmemcpy(cstr, c_buf+pos, str_len);
+ cstr[str_len] = '\0';
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ pos += str_len;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (c_buf)
+ HDfree(c_buf);
+ if (cstr)
+ HDfree(cstr);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1string */
@@ -940,52 +868,63 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Awrite_1string
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray j_buf)
{
- herr_t status = -1;
- char *c_buf;
- jsize str_len;
- jsize i;
- jsize n;
-
- if (j_buf == NULL) {
- h5nullArgument(env, "H5Awrite_string: buf is NULL");
- } /* end if */
- else if ((n = ENVPTR->GetArrayLength(ENVPAR j_buf)) <= 0) {
- h5nullArgument(env, "H5Awrite_string: buf length <= 0");
- } /* end else if */
- else if ((str_len = (jsize)H5Tget_size((hid_t)mem_type_id)) <=0) {
- h5libraryError(env);
- } /* end else if */
- else {
- if ((c_buf = (char*)HDmalloc((size_t)n * (size_t)str_len)) == NULL) {
- h5JNIFatalError(env, "H5Awrite_string: memory allocation failed.");
- } /* end if */
- else {
- for (i = 0; i < n; i++) {
- jstring obj = (jstring)ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)j_buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
+ const char *utf8 = NULL;
+ jstring obj;
+ size_t i, str_len;
+ jsize n;
+ char *c_buf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == j_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite_string: write buffer is NULL");
- if (utf8) {
- HDstrncpy(&c_buf[i * str_len], utf8, str_len);
- } /* end if */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, j_buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_string: write buffer length <= 0");
+ }
+
+ if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for */
+ if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Awrite_string: memory allocation failed");
- status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, c_buf);
+ for (i = 0; i < (size_t) n; i++) {
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ HDmemset(&c_buf[i * str_len], 0, str_len);
+ continue;
+ }
+
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Awrite_string: string not pinned");
+
+ HDstrncpy(&c_buf[i * str_len], utf8, str_len);
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for */
- if (c_buf)
- HDfree(c_buf);
- c_buf = NULL;
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, c_buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- } /* end else */
- } /* end else */
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (c_buf)
+ HDfree(c_buf);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1string */
@@ -999,167 +938,201 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AreadVL
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5AreadVL: buf is NULL");
- } /* end if */
- else {
- isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
- if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
- unsigned i;
- int nm = H5Tget_nmembers(mem_type_id);
- for(i = 0; i <nm; i++) {
- hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
- isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
- H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
- H5Tclose(nested_tid);
- }
- }
- else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
- isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
- }
- if (isStr == 0 || isComplex>0 || isVlenStr) {
- status = H5AreadVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
- }
- else if (isStr > 0) {
- status = H5AreadVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
+ H5T_class_t type_class;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
+ htri_t isComplex2 = 0;
+ hid_t nested_tid = H5I_INVALID_HID;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5AreadVL: read buffer is NULL");
+
+ if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (type_class == H5T_COMPOUND) {
+ unsigned i;
+ int num_members;
+
+ if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (unsigned) num_members; i++) {
+ if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex2 = H5Tdetect_class((hid_t)nested_tid, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ isComplex = isComplex || isComplex2;
+
+ if (H5Tclose(nested_tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nested_tid = H5I_INVALID_HID;
}
- } /* end else */
+ }
+ else if (type_class == H5T_VLEN) {
+ isVlenStr = 1; /* Strings created by H5Tvlen_create(H5T_C_S1) */
+ }
+
+ if (!isStr || isComplex || isVlenStr) {
+ if ((status = H5AreadVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else if (isStr) {
+ if ((status = H5AreadVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (nested_tid >= 0)
+ H5Tclose(nested_tid);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1VL */
-herr_t
-H5AreadVL_asstr
+/*
+ * Helper method to read in a buffer of variable-length strings from an HDF5
+ * attribute. Each C-string is converted to a Java string and set in the output
+ * buffer in turn.
+ */
+static herr_t
+H5AreadVL_str
(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
{
- jint i;
- jint n;
- hid_t sid;
- jstring jstr;
- h5str_t h5str;
- hvl_t *rdata;
- hsize_t dims[H5S_MAX_RANK];
- size_t size;
- size_t max_len = 0;
- herr_t status = -1;
+ jstring jstr;
+ jsize i, n;
+ char **strs = NULL;
+ herr_t status = FAIL;
- /* Get size of string array */
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- /* we will need to read n number of hvl_t structures */
- rdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
- if (rdata == NULL) {
- h5JNIFatalError(env, "H5AreadVL_asstr: failed to allocate buff for read");
- } /* end if */
- else {
- status = H5Aread(aid, tid, rdata);
-
- if (status < 0) {
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata);
- H5Sclose(sid);
- HDfree(rdata);
- h5JNIFatalError(env, "H5AreadVL_asstr: failed to read data");
- } /* end if */
- else {
- /* calculate the largest size of all the hvl_t structures read */
- max_len = 1;
- for (i=0; i < n; i++) {
- if ((rdata + i)->len > max_len)
- max_len = (rdata + i)->len;
- }
-
- /* create one malloc to hold largest element */
- size = H5Tget_size(tid) * max_len;
- HDmemset(&h5str, 0, sizeof(h5str_t));
- h5str_new(&h5str, 4 * size);
-
- if (h5str.s == NULL) {
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata);
- H5Sclose(sid);
- HDfree(rdata);
- h5JNIFatalError(env, "H5AreadVL_asstr: failed to allocate buf");
- } /* end if */
- else {
- H5T_class_t tclass = H5Tget_class(tid);
- /* convert each element to char string */
- for (i=0; i < n; i++) {
- h5str.s[0] = '\0';
- h5str_vlsprintf(&h5str, aid, tid, rdata+i, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- } /* end for */
- h5str_free(&h5str);
-
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, rdata);
- H5Sclose(sid);
- HDfree(rdata);
- } /* end else */
- } /* end else */
- } /* end else */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadVL_str: buf length < 0");
+ }
+
+ if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_str: failed to allocate variable length string read buffer");
+
+ if ((status = H5Aread(aid, tid, strs)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /*
+ * When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings),
+ * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
+ * once done.
+ */
+ for (i = 0; i < n; i++) {
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, strs[i])))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ H5free_memory(strs[i]);
+ strs[i] = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (strs) {
+ for (i = 0; i < n; i++) {
+ if (strs[i])
+ H5free_memory(strs[i]);
+ }
+
+ HDfree(strs);
+ }
return status;
-}
+} /* end H5AreadVL_str */
-herr_t
-H5AreadVL_str
+/*
+ * Helper method to read in a buffer of variable-length (hvl_t)
+ * structures from an HDF5 attribute and convert each variable-length
+ * element's buffer into a Java string. Each string is then set
+ * in the output buffer in turn.
+ */
+static herr_t
+H5AreadVL_asstr
(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
{
- char **strs;
- jstring jstr;
- jint i;
- jint n;
- hid_t sid;
- hsize_t dims[H5S_MAX_RANK];
- herr_t status = -1;
-
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- strs =(char**)HDcalloc((size_t)n, sizeof(char*));
-
- if (strs == NULL) {
- h5JNIFatalError(env, "H5AreadVL_str: failed to allocate buff for read variable length strings");
- } /* end if */
- else {
- status = H5Aread(aid, tid, strs);
-
- if (status < 0) {
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, strs);
- H5Sclose(sid);
- HDfree(strs);
- h5JNIFatalError(env, "H5AreadVL_str: failed to read variable length strings");
- } /* end if */
- else {
- for (i=0; i < n; i++) {
- jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- H5free_memory (strs[i]);
- } /* end for */
+ hsize_t dims[H5S_MAX_RANK];
+ jstring jstr;
+ h5str_t h5str;
+ size_t typeSize;
+ size_t i;
+ hid_t sid = H5I_INVALID_HID;
+ jsize n;
+ void *readBuf = NULL;
+ herr_t status = FAIL;
- /*
- for repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings,
- H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
- free space in time. Instead, use "H5free_memory(strs[i])" above to free individual strings
- after it is done.
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs);
- */
+ HDmemset(&h5str, 0, sizeof(h5str_t));
+
+ /* Get size of string array */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadVL_asstr: buf length < 0");
+ }
+
+ dims[0] = (hsize_t)n;
+ if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (readBuf = HDcalloc((size_t)n, typeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate read buffer");
- HDfree(strs);
- } /* end else */
- } /* end else */
+ if ((status = H5Aread(aid, tid, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Allocate a decent-sized initial string */
+ h5str_new(&h5str, 4 * typeSize);
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate buffer");
+
+ /* Convert each element to a char string */
+ for (i = 0; i < (size_t) n; i++) {
+ h5str.s[0] = '\0';
+
+ if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *) readBuf)[i * typeSize]), typeSize, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (readBuf) {
+ H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, readBuf);
+ HDfree(readBuf);
+ }
+ if (sid >= 0)
+ H5Sclose(sid);
return status;
-} /* end H5AreadVL_str */
+}
/*
* Class: hdf_hdf5lib_H5
@@ -1170,139 +1143,224 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AwriteVL
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5AwriteVL: buf is NULL");
- } /* end if */
- else {
- isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
- if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
- unsigned i;
- int nm = H5Tget_nmembers(mem_type_id);
- for(i = 0; i <nm; i++) {
- hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
- isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
- H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
- H5Tclose(nested_tid);
- }
- }
- else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
- isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
- }
- if (isStr == 0 || isComplex>0 || isVlenStr) {
- status = H5AwriteVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
- }
- else if (isStr > 0) {
- status = H5AwriteVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf);
+ H5T_class_t type_class;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
+ htri_t isComplex2 = 0;
+ hid_t nested_tid = H5I_INVALID_HID;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL: write buffer is NULL");
+
+ if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (type_class == H5T_COMPOUND) {
+ unsigned i;
+ int num_members;
+
+ if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for(i = 0; i < (unsigned) num_members; i++) {
+ if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex2 = H5Tdetect_class((hid_t)nested_tid, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ isComplex = isComplex || isComplex2;
+
+ if (H5Tclose(nested_tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nested_tid = H5I_INVALID_HID;
}
- } /* end else */
+ }
+ else if (type_class == H5T_VLEN) {
+ isVlenStr = 1; /* Strings created by H5Tvlen_create(H5T_C_S1) */
+ }
+
+ if (!isStr || isComplex || isVlenStr) {
+ if ((status = H5AwriteVL_asstr(env, (hid_t)attr_id, (hid_t)mem_type_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else if (isStr) {
+ if ((status = H5AwriteVL_str(env, (hid_t)attr_id, (hid_t)mem_type_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (nested_tid >= 0)
+ H5Tclose(nested_tid);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Awrite_1VL */
-herr_t
+/*
+ * Helper method to convert an array of Java strings into a buffer of C-strings.
+ * The buffer of C-strings is then written to the HDF5 attribute specified.
+ */
+static herr_t
H5AwriteVL_str
(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
{
- herr_t status = -1;
- char **wdata;
- jsize size;
- jint i;
+ const char *utf8 = NULL;
+ jstring obj;
+ jsize size;
+ jint i;
+ char **writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray) buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL_str: buf length < 0");
+ }
- size = ENVPTR->GetArrayLength(ENVPAR (jarray) buf);
+ if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate variable length string write buffer")
- wdata = (char**)HDcalloc((size_t)size + 1, sizeof(char*));
- if (!wdata) {
- h5JNIFatalError(env, "H5AwriteVL_str: cannot allocate buffer");
- } /* end if */
- else {
- HDmemset(wdata, 0, (size_t)size * sizeof(char*));
- for (i = 0; i < size; ++i) {
- jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray) buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
-
- if (utf8) {
- wdata[i] = (char*)HDmalloc((size_t)length + 1);
- if (wdata[i]) {
- HDmemset(wdata[i], 0, ((size_t)length + 1));
- HDstrncpy(wdata[i], utf8, (size_t)length);
- } /* end if */
- } /* end if */
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for (i = 0; i < size; ++i) */
-
- status = H5Awrite((hid_t)aid, (hid_t)tid, wdata);
+ for (i = 0; i < size; ++i) {
+ jsize length;
+
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) buf, i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ writeBuf[i] = NULL;
+ continue;
+ }
+
+ length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5AwriteVL_str: string not pinned");
+
+ if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate string buffer");
+
+ HDstrncpy(writeBuf[i], utf8, (size_t)length);
+ writeBuf[i][length] = '\0';
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for (i = 0; i < size; ++i) */
+
+ if ((status = H5Awrite((hid_t)aid, (hid_t)tid, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (writeBuf) {
for (i = 0; i < size; i++) {
- if(wdata[i]) {
- HDfree(wdata[i]);
- } /* end if */
- } /* end for */
- HDfree(wdata);
+ if (writeBuf[i])
+ HDfree(writeBuf[i]);
+ }
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ HDfree(writeBuf);
+ }
return (jint)status;
}
-herr_t
+/*
+ * Helper method to convert an array of Java strings into a buffer of
+ * variable-length (hvl_t) elements. The buffer of variable-length
+ * elements is then written to the HDF5 attribute.
+ */
+static herr_t
H5AwriteVL_asstr
(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
{
- char **strs;
- jstring jstr;
- jint i;
- jint n;
- hid_t sid;
- hsize_t dims[H5S_MAX_RANK];
- herr_t status = -1;
-
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- strs =(hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
-
- if (strs == NULL) {
- h5JNIFatalError(env, "H5AwriteVL_asstr: failed to allocate buff for read variable length strings");
- } /* end if */
- else {
- status = H5Awrite(aid, tid, strs);
-
- if (status < 0) {
- dims[0] = (hsize_t)n;
- sid = H5Screate_simple(1, dims, NULL);
- H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, strs);
- H5Sclose(sid);
- HDfree(strs);
- h5JNIFatalError(env, "H5AwriteVL_str: failed to read variable length strings");
- } /* end if */
- else {
- for (i=0; i < n; i++) {
- jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- H5free_memory (strs[i]);
- } /* end for */
+ const char *utf8 = NULL;
+ hsize_t dims[H5S_MAX_RANK];
+ jstring jstr;
+ size_t typeSize;
+ size_t i;
+ hid_t sid = H5I_INVALID_HID;
+ jsize n;
+ void *writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL_asstr: buf length < 0");
+ }
+
+ dims[0] = (hsize_t)n;
+ if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer");
+
+ /*
+ * When repeatedly writing a dataset with a large number of strs (e.g., 1,000,000 strings),
+ * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
+ * once done.
+ */
+ for (i = 0; i < (size_t) n; i++) {
+ if (NULL == (jstr = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) buf, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
/*
- for repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings,
- H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
- free space in time. Instead, use "H5free_memory(strs[i])" above to free individual strings
- after it is done.
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs);
- */
+ * If the string object was NULL, skip it.
+ */
+ HDmemset(&(((char *) writeBuf)[i * typeSize]), 0, typeSize);
+ continue;
+ }
+
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, jstr);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
+
+ PIN_JAVA_STRING(ENVONLY, jstr, utf8, NULL, "H5AwriteVL_asstr: failed to pin string buffer");
+
+ /*
+ * TODO: If the string isn't a copy, we should probably make
+ * one before destroying it with h5str_convert.
+ */
+
+ if (!h5str_convert(ENVONLY, (char **) &utf8, aid, tid, &(((char *) writeBuf)[i * typeSize]), 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- HDfree(strs);
- } /* end else */
- } /* end else */
+ UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for (i = 0; i < n; i++) */
+
+ if ((status = H5Awrite(aid, tid, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, jstr, utf8);
+ if (writeBuf) {
+ H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, writeBuf);
+ HDfree(writeBuf);
+ }
+ if (sid >= 0)
+ H5Sclose(sid);
return status;
} /* end H5AwriteVL_str */
@@ -1316,47 +1374,52 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = -1;
- h5str_t h5str;
- size_t size;
- hdset_reg_ref_t *ref_data;
- jint i;
- jint n;
- jstring jstr;
+ hdset_reg_ref_t *ref_data = NULL;
+ h5str_t h5str;
+ jstring jstr;
+ jsize i, n;
+ herr_t status = FAIL;
- hid_t region = -1;
- hid_t aid = (hid_t) attr_id;
- hid_t tid = (hid_t) mem_type_id;
+ UNUSED(clss);
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- size = sizeof(hdset_reg_ref_t); /*H5Tget_size(tid);*/
- ref_data = (hdset_reg_ref_t*)HDmalloc(size * (size_t)n);
+ HDmemset(&h5str, 0, sizeof(h5str_t));
- if (ref_data == NULL) {
- h5JNIFatalError(env, "H5Aread_reg_ref: failed to allocate buff for read");
- return -1;
- } /* end if */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_reg_ref: buf length < 0");
+ }
- status = H5Aread(aid, tid, ref_data);
+ if (NULL == (ref_data = (hdset_reg_ref_t *) HDmalloc((size_t)n * sizeof(hdset_reg_ref_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer");
- if (status < 0) {
- HDfree(ref_data);
- h5JNIFatalError(env, "H5Aread_reg_ref: failed to read data");
- return -1;
- } /* end if */
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, ref_data)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- HDmemset(&h5str, 0, sizeof(h5str_t));
h5str_new(&h5str, 1024);
- for (i=0; i<n; i++) {
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate buffer");
+
+ for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
- h5str_sprintf(&h5str, aid, tid, ref_data[i], 0, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
+ if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, ref_data[i], 0, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
} /* end for */
- h5str_free(&h5str);
- HDfree(ref_data);
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (ref_data)
+ HDfree(ref_data);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref */
@@ -1370,12 +1433,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aget_1space
(JNIEnv *env, jclass clss, jlong attr_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Aget_space((hid_t)attr_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Aget_space((hid_t)attr_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aget_1space */
@@ -1388,12 +1453,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aget_1type
(JNIEnv *env, jclass clss, jlong attr_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Aget_type((hid_t)attr_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Aget_type((hid_t)attr_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aget_1type */
@@ -1406,34 +1473,29 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1name
(JNIEnv *env, jclass clss, jlong attr_id)
{
- char *aName;
jstring str = NULL;
ssize_t buf_size;
+ char *attrName = NULL;
+
+ UNUSED(clss);
+
+ if ((buf_size = H5Aget_name((hid_t)attr_id, 0, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aget_name: failed to allocate attribute name buffer");
+
+ if (H5Aget_name((hid_t)attr_id, (size_t)buf_size + 1, attrName) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ attrName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, attrName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (attrName)
+ HDfree(attrName);
- /* get the length of the name */
- buf_size = H5Aget_name((hid_t)attr_id, 0, NULL);
- if (buf_size <= 0) {
- h5badArgument(env, "H5Aget_name: buf_size <= 0");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Aget_name: malloc failed");
- } /* end if */
- else {
- buf_size = H5Aget_name((hid_t)attr_id, (size_t)buf_size, aName);
- if (buf_size < 0) {
- HDfree(aName);
- h5libraryError(env);
- } /* end if */
- else {
- /* save the string; */
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- HDfree(aName);
- } /* end else */
- } /* end else */
- } /* end else */
return str;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1name */
@@ -1446,12 +1508,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs
(JNIEnv *env, jclass clss, jlong loc_id)
{
- int retVal = -1;
+ int retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Aget_num_attrs((hid_t)loc_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Aget_num_attrs((hid_t)loc_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs */
@@ -1464,18 +1528,19 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Adelete
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
- herr_t status = -1;
- const char *aName;
+ const char *attrName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- status = H5Adelete((hid_t)loc_id, aName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Adelete: attribute name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Adelete((hid_t)loc_id, attrName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Adelete */
@@ -1489,14 +1554,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Aclose
(JNIEnv *env, jclass clss, jlong attr_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- if (attr_id > 0)
- retVal = H5Aclose((hid_t)attr_id);
+ UNUSED(clss);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Aclose((hid_t)attr_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aclose */
@@ -1510,24 +1575,24 @@ Java_hdf_hdf5lib_H5__1H5Acreate2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
jlong space_id, jlong create_plist, jlong access_plist)
{
- hid_t status = -1;
- const char *aName;
+ const char *attrName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- status = H5Acreate2((hid_t)loc_id, aName, (hid_t)type_id,
- (hid_t)space_id, (hid_t)create_plist, (hid_t)access_plist );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Acreate2: attribute name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id,
+ (hid_t)space_id, (hid_t)create_plist, (hid_t)access_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Acreate2 */
-
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Aopen
@@ -1538,18 +1603,19 @@ Java_hdf_hdf5lib_H5__1H5Aopen
(JNIEnv *env, jclass clss, jlong obj_id, jstring name, jlong access_plist)
{
- hid_t retVal = -1;
- const char *aName;
+ const char *attrName = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- retVal = H5Aopen((hid_t)obj_id, aName, (hid_t)access_plist);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Aopen: attribute name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Aopen((hid_t)obj_id, attrName, (hid_t)access_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, name, attrName);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen */
@@ -1563,19 +1629,20 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint idx_type, jint order, jlong n, jlong aapl_id, jlong lapl_id)
{
- hid_t retVal = -1;
- const char *aName;
+ const char *objName = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, aName);
- if (aName != NULL) {
- retVal = H5Aopen_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type,
- (H5_iter_order_t)order, (hsize_t)n, (hid_t)aapl_id, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, aName);
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Aopen_by_idx: object name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Aopen_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type,
+ (H5_iter_order_t)order, (hsize_t)n, (hid_t)aapl_id, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx */
@@ -1589,20 +1656,24 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong type_id, jlong space_id, jlong acpl_id, jlong aapl_id, jlong lapl_id)
{
- hid_t retVal = -1;
- const char *aName;
- const char *attrName;
+ const char *objName = NULL;
+ const char *attrName = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
- if (aName != NULL && attrName != NULL) {
- retVal = H5Acreate_by_name((hid_t)loc_id, aName, attrName, (hid_t)type_id,
- (hid_t)space_id, (hid_t)acpl_id, (hid_t)aapl_id, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Acreate_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Acreate_by_name: attribute name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Acreate_by_name((hid_t)loc_id, objName, attrName, (hid_t)type_id,
+ (hid_t)space_id, (hid_t)acpl_id, (hid_t)aapl_id, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name */
@@ -1616,21 +1687,25 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Aexists_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id)
{
+ const char *objName = NULL;
+ const char *attrName = NULL;
htri_t bval = JNI_FALSE;
- const char *aName;
- const char *attrName;
- PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
- if (aName != NULL && attrName != NULL) {
- bval = H5Aexists_by_name((hid_t)loc_id, aName, attrName, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aexists_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Aexists_by_name: attribute name not pinned");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ if ((bval = H5Aexists_by_name((hid_t)loc_id, objName, attrName, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Aexists_1by_1name */
@@ -1644,24 +1719,27 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Arename
(JNIEnv *env, jclass clss, jlong loc_id, jstring old_attr_name, jstring new_attr_name)
{
- herr_t retVal = -1;
- const char *oName;
- const char *nName;
+ const char *oldAttrName = NULL;
+ const char *newAttrName = NULL;
+ herr_t retVal = FAIL;
- PIN_JAVA_STRING_TWO(old_attr_name, oName, new_attr_name, nName);
- if (oName != NULL && nName != NULL) {
- retVal = H5Arename((hid_t)loc_id, oName, nName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(old_attr_name, oName, new_attr_name, nName);
+ PIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName, NULL, "H5Arename: old attribute name not pinned");
+ PIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName, NULL, "H5Arename: new attribute name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Arename((hid_t)loc_id, oldAttrName, newAttrName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newAttrName)
+ UNPIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName);
+ if (oldAttrName)
+ UNPIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Arename */
-
/*
* Class: hdf_hdf5lib_H5
* Method: H5Arename_by_name
@@ -1671,20 +1749,27 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Arename_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring old_attr_name, jstring new_attr_name, jlong lapl_id)
{
- herr_t retVal = -1;
- const char *aName;
- const char *oName;
- const char *nName;
+ const char *objName = NULL;
+ const char *oldAttrName = NULL;
+ const char *newAttrName = NULL;
+ herr_t retVal = FAIL;
- PIN_JAVA_STRING_THREE(obj_name, aName, old_attr_name, oName, new_attr_name, nName);
- if (aName != NULL && oName != NULL && nName != NULL) {
- retVal = H5Arename_by_name((hid_t)loc_id, aName, oName, nName, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_THREE(obj_name, aName, old_attr_name, oName, new_attr_name, nName);
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Arename_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName, NULL, "H5Arename_by_name: old attribute name not pinned");
+ PIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName, NULL, "H5Arename_by_name: new attribute name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Arename_by_name((hid_t)loc_id, objName, oldAttrName, newAttrName, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newAttrName)
+ UNPIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName);
+ if (oldAttrName)
+ UNPIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Arename_1by_1name */
@@ -1698,51 +1783,37 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id)
{
- size_t buf_size;
- char *aValue;
- jlong status_size;
- jstring str = NULL;
- const char *aName;
-
- PIN_JAVA_STRING(obj_name, aName);
- if (aName != NULL) {
- /* get the length of the attribute name */
- status_size = H5Aget_name_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type,
- (H5_iter_order_t) order, (hsize_t) n, (char*)NULL, (size_t)0, (hid_t)lapl_id);
-
- if(status_size < 0) {
- UNPIN_JAVA_STRING(obj_name, aName);
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = (size_t)status_size + 1;/* add extra space for the null terminator */
-
- aValue = (char*)HDmalloc(sizeof(char) * buf_size);
- if (aValue == NULL) {
- UNPIN_JAVA_STRING(obj_name, aName);
- h5outOfMemory(env, "H5Aget_name_by_idx: malloc failed ");
- } /* end if */
- else {
- status_size = H5Aget_name_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type,
- (H5_iter_order_t) order, (hsize_t) n, (char*)aValue, (size_t)buf_size, (hid_t)lapl_id);
-
- UNPIN_JAVA_STRING(obj_name, aName);
-
- if (status_size < 0) {
- HDfree(aValue);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aValue);
- HDfree(aValue);
- if (str == NULL) {
- /* exception -- fatal JNI error */
- h5JNIFatalError(env, "H5Aget_name_by_idx: return string not created");
- } /* end if */
- } /* end else */
- } /* end else */
- } /* end else */
- }
+ const char *objName = NULL;
+ jstring str = NULL;
+ ssize_t status_size = -1;
+ char *attrName = NULL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_name_by_idx: object name not pinned");
+
+ /* Get the length of the attribute name */
+ if ((status_size = H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type,
+ (H5_iter_order_t) order, (hsize_t) n, (char *)NULL, (size_t)0, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t) status_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Aget_name_by_idx: failed to allocate buffer for attribute name");
+
+ if ((H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type,
+ (H5_iter_order_t) order, (hsize_t) n, (char *)attrName, (size_t)status_size + 1, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ attrName[status_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, attrName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (attrName)
+ HDfree(attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
+
return str;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx */
@@ -1755,14 +1826,17 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1storage_1size
(JNIEnv *env, jclass clss, jlong attr_id)
{
- hsize_t retVal = (hsize_t)-1;
+ hsize_t retVal = 0;
- retVal = H5Aget_storage_size((hid_t)attr_id);
-/* probably returns '0' if fails--don't do an exception */
+ UNUSED(clss);
+
+ if (!(retVal = H5Aget_storage_size((hid_t)attr_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1storage_1size */
-
/*
* Class: hdf_hdf5lib_H5
* Method: H5Aget_info
@@ -1772,23 +1846,23 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1info
(JNIEnv *env, jclass clss, jlong attr_id)
{
- herr_t status = -1;
H5A_info_t ainfo;
- jvalue args[4];
jobject ret_obj = NULL;
+ jvalue args[4];
- status = H5Aget_info((hid_t)attr_id, &ainfo);
+ UNUSED(clss);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].z = ainfo.corder_valid;
- args[1].j = ainfo.corder;
- args[2].i = ainfo.cset;
- args[3].j = (jlong)ainfo.data_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args);
- } /* end else */
+ if (H5Aget_info((hid_t)attr_id, &ainfo) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].z = ainfo.corder_valid;
+ args[1].j = ainfo.corder;
+ args[2].i = ainfo.cset;
+ args[3].j = (jlong)ainfo.data_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args, ret_obj);
+
+done:
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1info */
@@ -1801,30 +1875,31 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id)
{
- herr_t status;
+ const char *objName = NULL;
H5A_info_t ainfo;
+ herr_t status;
jvalue args[4];
jobject ret_obj = NULL;
- const char *aName;
- PIN_JAVA_STRING(obj_name, aName);
- if (aName != NULL) {
- status = H5Aget_info_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type,
- (H5_iter_order_t)order, (hsize_t)n, &ainfo, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(obj_name, aName);
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_info_by_idx: object name not pinned");
+
+ if ((status = H5Aget_info_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type,
+ (H5_iter_order_t)order, (hsize_t)n, &ainfo, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].z = ainfo.corder_valid;
+ args[1].j = ainfo.corder;
+ args[2].i = ainfo.cset;
+ args[3].j = (jlong)ainfo.data_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args, ret_obj);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].z = ainfo.corder_valid;
- args[1].j = ainfo.corder;
- args[2].i = ainfo.cset;
- args[3].j = (jlong)ainfo.data_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args);
- } /* end else */
- }
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx */
@@ -1837,30 +1912,34 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id)
{
- const char *aName;
- const char *attrName;
- herr_t status;
+ const char *objName = NULL;
+ const char *attrName = NULL;
H5A_info_t ainfo;
+ herr_t status;
jvalue args[4];
jobject ret_obj = NULL;
- PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
- if (aName != NULL && attrName != NULL) {
- status = H5Aget_info_by_name((hid_t)loc_id, aName, attrName, &ainfo, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_info_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Aget_info_by_name: attribute name not pinned");
+
+ if ((status = H5Aget_info_by_name((hid_t)loc_id, objName, attrName, &ainfo, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].z = ainfo.corder_valid;
+ args[1].j = ainfo.corder;
+ args[2].i = ainfo.cset;
+ args[3].j = (jlong)ainfo.data_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args, ret_obj);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].z = ainfo.corder_valid;
- args[1].j = ainfo.corder;
- args[2].i = ainfo.cset;
- args[3].j = (jlong)ainfo.data_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args);
- } /* end else */
- }
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name */
@@ -1873,19 +1952,23 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Adelete_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id)
{
- herr_t retVal = -1;
- const char *aName;
- const char *attrName;
+ const char *objName = NULL;
+ const char *attrName = NULL;
+ herr_t retVal = FAIL;
- PIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
- if (aName != NULL && attrName != NULL) {
- retVal = H5Adelete_by_name((hid_t)loc_id, aName, attrName, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, aName, attr_name, attrName);
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Adelete_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Adelete_by_name: attribute name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Adelete_by_name((hid_t)loc_id, objName, attrName, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Adelete_1by_1name */
@@ -1899,20 +1982,21 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Aexists
(JNIEnv *env, jclass clss, jlong obj_id, jstring attr_name)
{
+ const char *attrName = NULL;
htri_t bval = JNI_FALSE;
- const char *aName;
- PIN_JAVA_STRING(attr_name, aName);
- if (aName != NULL) {
- bval = H5Aexists((hid_t)obj_id, aName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(attr_name, aName);
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Aexists: attribute name not pinned");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ if ((bval = H5Aexists((hid_t)obj_id, attrName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Aexists */
@@ -1926,18 +2010,19 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id)
{
- herr_t status = -1;
- const char *aName;
+ const char *objName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(obj_name, aName);
- if (aName != NULL) {
- status = H5Adelete_by_idx((hid_t)loc_id, aName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(obj_name, aName);
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Adelete_by_idx: object name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Adelete_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
} /* end Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx */
/*
@@ -1950,19 +2035,23 @@ Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong aapl_id, jlong lapl_id)
{
- hid_t status = -1;
- const char *aName;
- const char *oName;
+ const char *attrName = NULL;
+ const char *objName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING_TWO(obj_name, oName, attr_name, aName);
- if (oName != NULL && aName != NULL) {
- status = H5Aopen_by_name((hid_t)loc_id, oName, aName, (hid_t)aapl_id, (hid_t)lapl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(obj_name, oName, attr_name, aName);
+ PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aopen_by_name: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Aopen_by_name: attribute name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Aopen_by_name((hid_t)loc_id, objName, attrName, (hid_t)aapl_id, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (attrName)
+ UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, obj_name, objName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name */
@@ -1976,60 +2065,69 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist
(JNIEnv *env, jclass clss, jlong attr_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Aget_create_plist((hid_t)attr_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Aget_create_plist((hid_t)attr_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist */
static herr_t
H5A_iterate_cb
(hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data) {
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
- jmethodID constructor;
- jvalue args[4];
- jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5A_info_t;Lhdf/hdf5lib/callbacks/H5A_iterate_t;)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
-
- args[0].z = info->corder_valid;
- args[1].j = info->corder;
- args[2].i = info->cset;
- args[3].j = (jlong)info->data_size;
- /* get a reference to your class if you don't have it already */
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5A_info_t");
- if (cls != 0) {
- /* get a reference to the constructor; the name is <init> */
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(ZJIJ)V");
- if (constructor != 0) {
- cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (cb_info_t == NULL) {
- printf("FATAL ERROR: hdf/hdf5lib/structs/H5A_info_t: Creation failed\n");
- }
- else {
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, g_id, str, cb_info_t, op_data);
- }
- } /* end if (constructor != 0) */
- } /* end if (cls != 0) */
- } /* end if (mid != 0) */
- } /* end if (cls != 0) */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
+ jmethodID constructor, mid;
+ jobject cb_info_t = NULL;
+ jobject visit_callback = wrapper->visit_callback;
+ jstring str;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jvalue args[4];
+ void *op_data = (void *)wrapper->op_data;
+ jint status = -1;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5A_iterate_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5A_info_t;Lhdf/hdf5lib/callbacks/H5A_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[0].z = info->corder_valid;
+ args[1].j = info->corder;
+ args[2].i = info->cset;
+ args[3].j = (jlong)info->data_size;
+
+ /* Get a reference to your class if you don't have it already */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5A_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(ZJIJ)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("FATAL ERROR: hdf/hdf5lib/structs/H5A_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
} /* end H5A_iterate_cb */
@@ -2044,22 +2142,24 @@ Java_hdf_hdf5lib_H5_H5Aiterate
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data)
{
- hsize_t start_idx = (hsize_t)idx;
- herr_t status = -1;
+ cb_wrapper wrapper = { callback_op, op_data };
+ hsize_t start_idx = (hsize_t)idx;
+ herr_t status = FAIL;
- cb_wrapper wrapper = {callback_op, op_data};
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Literate_by_name: op_data or callback_op is NULL");
- } /* end if */
- else {
- status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate: callback_op is NULL");
+ if ((status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aiterate */
@@ -2073,27 +2173,29 @@ Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data, jlong access_id)
{
- const char *lName;
- hsize_t start_idx = (hsize_t)idx;
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
+ const char *objName = NULL;
+ cb_wrapper wrapper = { callback_op, op_data };
+ hsize_t start_idx = (hsize_t)idx;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Literate_by_name: op_data or callback_op is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Aiterate_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper, (hid_t)access_id);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate_by_name: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate_by_name: callback_op is NULL");
- if (status < 0)
- h5libraryError(env);
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Aiterate_by_name: object name not pinned");
+
+ if ((status = H5Aiterate_by_name((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name */
diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index 79a5d0a..0ed3b6e 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -27,8 +27,12 @@ extern "C" {
#include <string.h>
#include "hdf5.h"
#include "h5util.h"
+#include "h5jni.h"
#include "h5dImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -36,121 +40,19 @@ typedef struct _cb_wrapper {
jobject op_data;
} cb_wrapper;
-#ifdef __cplusplus
- #ifdef _WINDOWS
- #include <direct.h>
- #endif
- #define CBENVPTR (cbenv)
- #define CBENVPAR
- #define JVMPTR (jvm)
- #define JVMPAR
- #define JVMPAR2
-#else
- #define CBENVPTR (*cbenv)
- #define CBENVPAR cbenv,
- #define JVMPTR (*jvm)
- #define JVMPAR jvm
- #define JVMPAR2 jvm,
-#endif
-
/********************/
/* Local Prototypes */
/********************/
-static herr_t H5DreadVL_asstr (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DreadVL_str (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DreadVL_array (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DwriteVL_asstr (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DwriteVL_str (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DwriteVL_array (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DwriteVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
/********************/
/* Local Macros */
/********************/
-#define PIN_BYTE_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jbyte*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_BYTE_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_SHORT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jshort*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetShortArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_SHORT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseShortArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_INT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jint*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetIntArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_INT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseIntArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_LONG_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jlong*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetLongArrayElements(ENVPAR buf,&isCopy); \
-}
-
-#define UNPIN_LONG_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_FLOAT_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jfloat*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetFloatArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_FLOAT_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseFloatArrayElements(ENVPAR buf, buffP, mode); \
-}
-
-#define PIN_DOUBLE_ARRAY() { \
- if (isCriticalPinning) \
- buffP = (jdouble*)ENVPTR->GetPrimitiveArrayCritical(ENVPAR buf, &isCopy); \
- else \
- buffP = ENVPTR->GetDoubleArrayElements(ENVPAR buf, &isCopy); \
-}
-
-#define UNPIN_DOUBLE_ARRAY(mode) { \
- if (isCriticalPinning) \
- ENVPTR->ReleasePrimitiveArrayCritical(ENVPAR buf, buffP, mode); \
- else \
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR buf, buffP, mode); \
-}
/*
* Class: hdf_hdf5lib_H5
@@ -162,18 +64,19 @@ Java_hdf_hdf5lib_H5__1H5Dcreate
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
jlong space_id, jlong create_plist_id)
{
- hid_t dset_id = -1;
- const char *fileName;
+ const char *dsetName = NULL;
+ hid_t dset_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- dset_id = H5Dcreate2((hid_t)loc_id, fileName, (hid_t)type_id, (hid_t)space_id, H5P_DEFAULT, (hid_t)create_plist_id, H5P_DEFAULT);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dcreate: dataset name not pinned");
- if (dset_id < 0)
- h5libraryError(env);
- }
+ if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, H5P_DEFAULT, (hid_t)create_plist_id, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dsetName)
+ UNPIN_JAVA_STRING(ENVONLY, name, dsetName);
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dcreate */
@@ -187,17 +90,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dopen
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
- hid_t dset_id = -1;
- const char *fileName;
+ const char *dsetName = NULL;
+ hid_t dset_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- dset_id = H5Dopen2((hid_t)loc_id, fileName, H5P_DEFAULT);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
- if (dset_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dopen: dataset name not pinned");
+
+ if ((dset_id = H5Dopen2((hid_t)loc_id, dsetName, H5P_DEFAULT)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dsetName)
+ UNPIN_JAVA_STRING(ENVONLY, name, dsetName);
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dopen */
@@ -211,12 +116,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dget_1space
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Dget_space((hid_t)dataset_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Dget_space((hid_t)dataset_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Dget_1space */
@@ -229,12 +136,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dget_1type
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Dget_type((hid_t)dataset_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Dget_type((hid_t)dataset_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Dget_1type */
@@ -247,40 +156,17 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Dget_create_plist((hid_t)dataset_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Dget_create_plist((hid_t)dataset_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist */
-static htri_t
-H5Tdetect_variable_str
- (hid_t tid) {
- htri_t ret_val = 0;
-
- if (H5Tget_class(tid) == H5T_COMPOUND) {
- unsigned i;
- unsigned nm = (unsigned)H5Tget_nmembers(tid);
- for(i = 0; i < nm; i++) {
- htri_t status = 0;
- hid_t mtid = 0;
- if((mtid = H5Tget_member_type(tid, i)) < 0)
- return -1; /* exit immediately on error */
- if((status = H5Tdetect_variable_str(mtid)) < 0)
- return status; /* exit immediately on error */
- ret_val |= status;
- H5Tclose (mtid);
- } /* end for */
- } /* end if */
- else
- ret_val = H5Tis_variable_str(tid);
-
- return ret_val;
-} /* end H5Tdetect_variable_str */
-
/*
* Class: hdf_hdf5lib_H5
* Method: H5Dread
@@ -291,48 +177,49 @@ Java_hdf_hdf5lib_H5_H5Dread
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jbyte *readBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread: buf does not support variable length type");
- } /* end else if */
+ PIN_BYTE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_BYTE_ARRAY();
-
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_BYTE_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_BYTE_ARRAY(0); /* update java buffer for return */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread */
@@ -347,44 +234,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jbyte *writeBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite: buf does not support variable length type");
- } /* end else if */
+ PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_BYTE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_BYTE_ARRAY(JNI_ABORT); /* no need to update buffer */
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite */
@@ -398,13 +290,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Dclose
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Dclose((hid_t)dataset_id);
+ UNUSED(clss);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Dclose((hid_t)dataset_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Dclose */
@@ -417,15 +310,17 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Dget_1storage_1size
(JNIEnv *env, jclass clss, jlong dataset_id)
{
- hsize_t retVal = (hsize_t)-1;
+ hsize_t retVal = 0;
- if (dataset_id < 0) {
- h5badArgument(env, "H5Dget_storage_size: not a dataset");
- } /* end if */
- else {
- retVal = H5Dget_storage_size((hid_t)dataset_id);
- } /* end else */
+ UNUSED(clss);
+ if (dataset_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dget_storage_size: not a dataset");
+
+ if (!(retVal = H5Dget_storage_size((hid_t)dataset_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Dget_1storage_1size */
@@ -439,27 +334,23 @@ Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim
(JNIEnv *env, jclass clss, jlong type_id, jlong space_id,
jlong xfer_plist_id, jbyteArray buf)
{
- herr_t status = -1;
- jbyte *byteP;
- jboolean isCopy;
+ jboolean vlenBufIsCopy;
+ jbyte *vlenBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dvlen_reclaim: buf is NULL");
- } /* end if */
- else {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Dvlen_reclaim: buf not pinned");
- } /* end if */
- else {
- status = H5Dvlen_reclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, byteP);
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dvlen_reclaim: buffer is NULL");
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, byteP, JNI_ABORT);
+ PIN_BYTE_ARRAY(ENVONLY, buf, vlenBuf, &vlenBufIsCopy, "H5Dvlen_reclaim: buffer not pinned");
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ if ((status = H5Dvlen_reclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, vlenBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (vlenBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, vlenBuf, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim */
@@ -474,47 +365,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1short
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jshortArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jshort *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ jshort *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_short: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_short: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_short: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_short: buf does not support variable length type");
- } /* end else if */
+ PIN_SHORT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_SHORT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_short: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_SHORT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_SHORT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_SHORT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1short */
@@ -529,44 +422,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1short
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jshortArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jshort *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ jshort *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
- if (buf == NULL ) {
- h5nullArgument(env, "H5Dwrite_short: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_short: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_short: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_short: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_short: buf does not support variable length type");
- } /* end else if */
+ PIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_SHORT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_short: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_SHORT_ARRAY(JNI_ABORT);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1short */
@@ -581,47 +479,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1int
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jintArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jint *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jint *readBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_int: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_int: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_int: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_int: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_int: buf does not support variable length type");
- } /* end else if */
+ PIN_INT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_INT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_int: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_INT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_INT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_INT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1int */
@@ -636,44 +536,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1int
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jintArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jint *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jint *writeBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_int: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_int: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_int: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_int: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_int: buf does not support variable length type");
- } /* end else if */
+ PIN_INT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_INT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_int: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_INT_ARRAY(JNI_ABORT);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_INT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1int */
@@ -688,47 +593,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1long
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jlongArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jlong *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jlong *readBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_long: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_long: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_long: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_long: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_long: buf does not support variable length type");
- } /* end else if */
+ PIN_LONG_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_LONG_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_long: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_LONG_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_LONG_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_LONG_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1long */
@@ -743,43 +650,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1long
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jlongArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jlong *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jlong *writeBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_long: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_long: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_long: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_long: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_long: buf does not support variable length type");
- } /* end else if */
+ PIN_LONG_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_LONG_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_long: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_LONG_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_LONG_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1long */
@@ -794,47 +707,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1float
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jfloatArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jfloat *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jfloat *readBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_float: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_float: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_float: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_float: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_float: buf does not support variable length type");
- } /* end else if */
+ PIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_FLOAT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_float: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_FLOAT_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_FLOAT_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1float */
@@ -849,43 +764,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1float
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jfloatArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jfloat *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jfloat *writeBuf = NULL;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_float: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_float: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_float: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_float: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_float: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_float: buf does not support variable length type");
- } /* end else if */
+ PIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_float: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_FLOAT_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_float: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_FLOAT_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1float */
@@ -900,47 +821,49 @@ Java_hdf_hdf5lib_H5_H5Dread_1double
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jdoubleArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jdouble *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean readBufIsCopy;
+ jdouble *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_double: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dread_double: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_double: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: read buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dread_double: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dread_double: buf does not support variable length type");
- } /* end else if */
+ PIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not pinned");
+ }
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (readBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_DOUBLE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dread_double: buf not pinned");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- if (status < 0) {
- UNPIN_DOUBLE_ARRAY(JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- UNPIN_DOUBLE_ARRAY(0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1double */
@@ -955,43 +878,49 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jdoubleArray buf, jboolean isCriticalPinning)
{
- herr_t status = -1;
- jdouble *buffP;
- jboolean isCopy;
- htri_t data_class;
+ jboolean writeBufIsCopy;
+ jdouble *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_double: buf is NULL");
- } /* end if */
- else if((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_double: H5Tdetect_class() failed");
- } /* end else if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_double: buf does not support variable length type");
- } /* end else if */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: write buffer is NULL");
+
+ if ((data_class = H5Tdetect_class(mem_type_id, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: variable length type not supported");
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ if ((data_class = H5Tdetect_variable_str(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (data_class)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: variable length type not supported");
+
+ if (isCriticalPinning) {
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not critically pinned");
+ }
else {
- /* recursive detect any vlen string in type (compound, array ...) */
- if((data_class = H5Tdetect_variable_str(mem_type_id)) < 0) {
- h5JNIFatalError(env, "H5Dwrite_double: H5Tdetect_variable_str() failed");
- } /* end if */
- else if(data_class == 1) {
- h5badArgument(env, "H5Dwrite_double: buf does not support variable length type");
- } /* end else if */
+ PIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not pinned");
+ }
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if (isCriticalPinning) {
+ UNPIN_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
else {
- PIN_DOUBLE_ARRAY();
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dwrite_double: buf not pinned");
- } /* end if */
- else {
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, buffP);
-
- UNPIN_DOUBLE_ARRAY(JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ UNPIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, (status < 0) ? JNI_ABORT : 0);
+ }
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1double */
@@ -1006,68 +935,59 @@ Java_hdf_hdf5lib_H5_H5Dread_1string
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray j_buf)
{
- herr_t status = -1;
- char *c_buf;
- char *cstr;
- size_t str_len;
- jsize i;
- jsize n;
- size_t pos;
- jstring jstr;
-
- c_buf = cstr = NULL;
- if (j_buf == NULL) {
- h5nullArgument(env, "H5Dread_string: buf is NULL");
- } /* end if */
- else if ((n = ENVPTR->GetArrayLength(ENVPAR j_buf)) <= 0) {
- h5nullArgument(env, "H5Dread_string: buf length <= 0");
- } /* end else if */
- else if ((str_len = H5Tget_size((hid_t)mem_type_id)) <=0) {
- h5libraryError(env);
- } /* end else if */
- else {
- if ((cstr = (char*)HDmalloc(str_len + 1)) == NULL) {
- h5JNIFatalError(env, "H5Dread_string: memory allocation failed.");
- } /* end if */
- else {
- if ((c_buf = (char*)HDmalloc((size_t)n * str_len)) == NULL) {
- if (cstr)
- HDfree(cstr);
- cstr = NULL;
- h5JNIFatalError(env, "H5Dread_string: memory allocation failed.");
- } /* end if */
- else {
- status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf);
-
- if (status < 0) {
- if (cstr)
- HDfree(cstr);
- cstr = NULL;
- if (c_buf)
- HDfree(c_buf);
- c_buf = NULL;
- h5libraryError(env);
- } /* end if */
- else {
- pos = 0;
- for (i = 0; i < n; i++) {
- HDmemcpy(cstr, c_buf+pos, str_len);
- cstr[str_len] = '\0';
- jstr = ENVPTR->NewStringUTF(ENVPAR cstr);
- ENVPTR->SetObjectArrayElement(ENVPAR j_buf, i, jstr);
- pos += str_len;
- } /* end for */
- } /* end else */
-
- if (c_buf)
- HDfree(c_buf);
- } /* end else cbuf allocation*/
-
- if (cstr)
- HDfree(cstr);
- } /* end else cstr allocation*/
- } /* end else */
+ jstring jstr;
+ size_t str_len;
+ size_t pos;
+ jsize i, n;
+ char *c_buf = NULL;
+ char *cstr = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == j_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_string: read buffer is NULL");
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, j_buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_string: read buffer length <= 0");
+ }
+
+ if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (cstr = (char *) HDmalloc(str_len + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
+
+ if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0, pos = 0; i < n; i++) {
+ HDmemcpy(cstr, c_buf+pos, str_len);
+ cstr[str_len] = '\0';
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ pos += str_len;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (c_buf)
+ HDfree(c_buf);
+ if (cstr)
+ HDfree(cstr);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1string */
@@ -1082,53 +1002,64 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray j_buf)
{
- herr_t status = -1;
- char *c_buf;
- jsize str_len;
- jsize i;
- jsize n;
-
- if (j_buf == NULL) {
- h5nullArgument(env, "H5Dwrite_string: buf is NULL");
- } /* end if */
- else if ((n = ENVPTR->GetArrayLength(ENVPAR j_buf)) <= 0) {
- h5nullArgument(env, "H5Dwrite_string: buf length <= 0");
- } /* end else if */
- else if ((str_len = (jsize)H5Tget_size((hid_t)mem_type_id)) <=0) {
- h5libraryError(env);
- } /* end else if */
- else {
- if ((c_buf = (char*)HDmalloc((size_t)n * (size_t)str_len)) == NULL) {
- h5JNIFatalError(env, "H5Dwrite_string: memory allocation failed.");
- } /* end if */
- else {
- for (i = 0; i < n; i++) {
- jstring obj = (jstring)ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)j_buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
-
- if (utf8) {
- HDstrncpy(&c_buf[i * str_len], utf8, str_len);
- } /* end if */
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for */
-
- status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf);
-
- if (c_buf)
- HDfree(c_buf);
- c_buf = NULL;
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- } /* end else */
- } /* end else */
+ const char *utf8 = NULL;
+ jstring obj;
+ size_t i, str_len;
+ jsize n;
+ char *c_buf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == j_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_string: write buffer is NULL");
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, j_buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_string: write buffer length <= 0");
+ }
+
+ if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed");
+
+ for (i = 0; i < (size_t) n; i++) {
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ HDmemset(&c_buf[i * str_len], 0, str_len);
+ continue;
+ }
+
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Dwrite_string: string not pinned");
+
+ HDstrncpy(&c_buf[i * str_len], utf8, str_len);
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for */
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (c_buf)
+ HDfree(c_buf);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1string */
@@ -1143,106 +1074,216 @@ Java_hdf_hdf5lib_H5_H5DreadVL
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
+ H5T_class_t type_class;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
+ htri_t isComplex2 = 0;
+ hid_t nested_tid = H5I_INVALID_HID;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5DreadVL: buf is NULL");
- } /* end if */
- else {
- isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
- if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
- unsigned i;
- int nm = H5Tget_nmembers(mem_type_id);
- for(i = 0; i <nm; i++) {
- hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
- isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
- H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
- H5Tclose(nested_tid);
- }
- }
- else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
- isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
- }
- if (isStr == 0 || isComplex>0 || isVlenStr) {
- status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
- }
- else if (isStr > 0) {
- status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DreadVL: read buffer is NULL");
+
+ if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (type_class == H5T_COMPOUND) {
+ unsigned i;
+ int num_members;
+
+ if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (unsigned) num_members; i++) {
+ if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex2 = H5Tdetect_class((hid_t)nested_tid, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ isComplex = isComplex || isComplex2;
+
+ if (H5Tclose(nested_tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nested_tid = H5I_INVALID_HID;
}
- } /* end else */
+ }
+ else if (type_class == H5T_VLEN) {
+ isVlenStr = 1; /* Strings created by H5Tvlen_create(H5T_C_S1) */
+ }
+
+ if (!isStr || isComplex || isVlenStr) {
+ if ((status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else if (isStr) {
+ if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (nested_tid >= 0)
+ H5Tclose(nested_tid);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1VL */
-herr_t
+/*
+ * Helper method to read in a buffer of variable-length strings from an HDF5
+ * dataset. Each C-string is converted to a Java string and set in the output
+ * buffer in turn.
+ */
+static herr_t
+H5DreadVL_str
+ (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
+{
+ jstring jstr;
+ jsize i, n;
+ char **strs = NULL;
+ herr_t status = FAIL;
+
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DreadVL_str: buf length < 0");
+ }
+
+ if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_str: failed to allocate variable length string read buffer");
+
+ if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, strs)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /*
+ * When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings),
+ * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
+ * once done.
+ */
+ for (i = 0; i < n; i++) {
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, strs[i])))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ H5free_memory(strs[i]);
+ strs[i] = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (strs) {
+ for (i = 0; i < n; i++) {
+ if (strs[i])
+ H5free_memory(strs[i]);
+ }
+
+ HDfree(strs);
+ }
+
+ return status;
+} /* end H5DreadVL_str */
+
+/*
+ * Helper method to read in a buffer of variable-length (hvl_t)
+ * structures from an HDF5 dataset and convert each variable-length
+ * element's buffer into a Java string. Each string is then set
+ * in the output buffer in turn.
+ */
+static herr_t
H5DreadVL_asstr
(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
{
- jint i;
- jint n;
- jstring jstr;
- h5str_t h5str;
- hvl_t *rdata;
- size_t size;
- size_t max_len = 0;
- herr_t status = -1;
+ H5T_class_t tclass;
+ jstring jstr;
+ h5str_t h5str;
+ hbool_t close_mem_space = FALSE;
+ size_t typeSize;
+ size_t i;
+ hid_t mem_space = mem_sid;
+ jsize n;
+ void *readBuf = NULL;
+ herr_t status = FAIL;
+
+ HDmemset(&h5str, 0, sizeof(h5str_t));
+
+ if (mem_space == H5S_ALL) {
+ mem_space = file_sid;
+
+ if (mem_space == H5S_ALL) {
+ /*
+ * Retrieve a valid dataspace for H5Dvlen_reclaim().
+ */
+ if ((mem_space = H5Dget_space(did)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ close_mem_space = TRUE;
+
+ if (H5Sselect_all(mem_space) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ }
/* Get size of string array */
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- /* we will need to read n number of hvl_t structures */
- rdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
- if (rdata == NULL) {
- h5JNIFatalError(env, "H5DreadVL_asstr: failed to allocate buff for read");
- } /* end if */
- else {
- status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, rdata);
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DreadVL_asstr: buf length < 0");
+ }
- if (status < 0) {
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata);
- HDfree(rdata);
- h5JNIFatalError(env, "H5DreadVL_asstr: failed to read data");
- } /* end if */
- else {
- /* calculate the largest size of all the hvl_t structures read */
- max_len = 1;
- for (i=0; i < n; i++) {
- if ((rdata + i)->len > max_len)
- max_len = (rdata + i)->len;
- }
-
- /* create one malloc to hold largest element */
- size = H5Tget_size(tid) * max_len;
- HDmemset(&h5str, 0, sizeof(h5str_t));
- h5str_new(&h5str, 4 * size);
-
- if (h5str.s == NULL) {
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata);
- HDfree(rdata);
- h5JNIFatalError(env, "H5DreadVL_asstr: failed to allocate buf");
- } /* end if */
- else {
- H5T_class_t tclass = H5Tget_class(tid);
- /* convert each element to char string */
- for (i=0; i < n; i++) {
- h5str.s[0] = '\0';
- h5str_vlsprintf(&h5str, did, tid, rdata+i, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- } /* end for */
- h5str_free(&h5str);
-
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, rdata);
- HDfree(rdata);
- } /* end else */
- } /* end else */
- } /* end else */
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (readBuf = HDcalloc((size_t)n, typeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer");
+
+ if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Allocate a decent-sized initial string */
+ h5str_new(&h5str, 4 * typeSize);
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate buffer");
+
+ if ((tclass = H5Tget_class(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Convert each element to a char string */
+ for (i = 0; i < (size_t) n; i++) {
+ h5str.s[0] = '\0';
+
+ if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *) readBuf)[i * typeSize]), typeSize, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (readBuf) {
+ H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, readBuf);
+ HDfree(readBuf);
+ }
+ if (close_mem_space)
+ H5Sclose(mem_space);
return status;
}
@@ -1264,168 +1305,265 @@ Java_hdf_hdf5lib_H5_H5Dread_1VLStrings
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isVlenStr=0;
+ htri_t isVlenStr = 0;
+ herr_t status = FAIL;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dread_VLStrings: buf is NULL");
- } /* end if */
- else {
- isVlenStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread_VLStrings: read buffer is NULL");
- if (isVlenStr) {
- status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
- } /* end if */
- else
- h5badArgument(env, "H5Dread_VLStrings: type is not variable length String");
- } /* end else */
+ if ((isVlenStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (isVlenStr) {
+ if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ else
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_VLStrings: datatype is not variable length String");
+
+done:
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1VLStrings */
-herr_t
-H5DreadVL_str
- (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5DwriteVL
+ * Signature: (JJJJJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5DwriteVL
+ (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
+ jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- char **strs;
- jstring jstr;
- jint i;
- jint n;
- herr_t status = -1;
+ H5T_class_t type_class;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
+ htri_t isComplex2 = 0;
+ hid_t nested_tid = H5I_INVALID_HID;
+ herr_t status = FAIL;
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- strs =(char**)HDcalloc((size_t)n, sizeof(char*));
+ UNUSED(clss);
- if (strs == NULL) {
- h5JNIFatalError(env, "H5DreadVL_str: failed to allocate buff for read variable length strings");
- } /* end if */
- else {
- status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, strs);
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL: write buffer is NULL");
- if (status < 0) {
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs);
- HDfree(strs);
- h5JNIFatalError(env, "H5DreadVL_str: failed to read variable length strings");
- } /* end if */
- else {
- for (i=0; i < n; i++) {
- jstr = ENVPTR->NewStringUTF(ENVPAR strs[i]);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- H5free_memory (strs[i]);
- } /* end for */
+ if ((isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- /*
- for repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings,
- H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
- free space in time. Instead, use "H5free_memory(strs[i])" above to free individual strings
- after it is done.
- H5Dvlen_reclaim(tid, mem_sid, xfer_plist_id, strs);
- */
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- HDfree(strs);
- } /* end else */
- } /* end else */
+ if (type_class == H5T_COMPOUND) {
+ unsigned i;
+ int num_members;
- return status;
-} /* end H5DreadVL_str */
+ if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (unsigned) num_members; i++) {
+ if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((isComplex2 = H5Tdetect_class((hid_t)nested_tid, H5T_VLEN)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ isComplex = isComplex || isComplex2;
+
+ if (H5Tclose(nested_tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nested_tid = H5I_INVALID_HID;
+ }
+ }
+ else if (type_class == H5T_VLEN) {
+ isVlenStr = 1; /* Strings created by H5Tvlen_create(H5T_C_S1) */
+ }
+ if (!isStr || isComplex || isVlenStr) {
+ if ((status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else if (isStr) {
+ if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (nested_tid >= 0)
+ H5Tclose(nested_tid);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VL */
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5DwriteVL
- * Signature: (JJJJJ[Ljava/lang/String;)I
+ * Helper method to convert an array of Java strings into a buffer of C-strings.
+ * The buffer of C-strings is then written to the HDF5 dataset specified.
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5DwriteVL
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
+static herr_t
+H5DwriteVL_str
+ (JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
+ const char *utf8 = NULL;
+ jstring obj;
+ jsize size;
+ jsize i;
+ char **writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray) buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL_str: buf length < 0");
+ }
- if (buf == NULL) {
- h5nullArgument(env, "H5DwriteVL: buf is NULL");
- } /* end if */
- else {
- isStr = H5Tdetect_class((hid_t)mem_type_id, H5T_STRING);
- if (H5Tget_class((hid_t)mem_type_id) == H5T_COMPOUND) {
- unsigned i;
- int nm = H5Tget_nmembers(mem_type_id);
- for(i = 0; i <nm; i++) {
- hid_t nested_tid = H5Tget_member_type((hid_t)mem_type_id, i);
- isComplex = H5Tdetect_class((hid_t)nested_tid, H5T_COMPOUND) ||
- H5Tdetect_class((hid_t)nested_tid, H5T_VLEN);
- H5Tclose(nested_tid);
- }
- }
- else if (H5Tget_class((hid_t)mem_type_id) == H5T_VLEN) {
- isVlenStr = 1; /* strings created by H5Tvlen_create(H5T_C_S1) */
- }
- if (isStr == 0 || isComplex>0 || isVlenStr) {
- status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
+ if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate variable length string write buffer");
+
+ for (i = 0; i < size; ++i) {
+ jsize length;
+
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ writeBuf[i] = NULL;
+ continue;
}
- else if (isStr > 0) {
- status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
+
+ length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_str: string not pinned");
+
+ if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer");
+
+ HDstrncpy(writeBuf[i], utf8, (size_t)length + 1);
+ writeBuf[i][length] = '\0';
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for (i = 0; i < size; ++i) */
+
+ if ((status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (writeBuf) {
+ for (i = 0; i < size; i++) {
+ if (writeBuf[i])
+ HDfree(writeBuf[i]);
}
- } /* end else */
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VL */
+ HDfree(writeBuf);
+ }
+
+ return status;
+} /* end H5DwriteVL_str */
-herr_t
+/*
+ * Helper method to convert an array of Java strings into a buffer of
+ * variable-length (hvl_t) elements. The buffer of variable-length
+ * elements is then written to the HDF5 dataset.
+ */
+static herr_t
H5DwriteVL_asstr
(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- hvl_t *wdata;
- jsize size;
- jint i;
- jint n;
+ const char *utf8 = NULL;
+ jstring obj;
+ hbool_t close_mem_space = FALSE;
+ size_t typeSize;
+ size_t i;
+ hid_t mem_space = mem_sid;
+ jsize n;
+ void *writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if (mem_space == H5S_ALL) {
+ mem_space = file_sid;
+
+ if (mem_space == H5S_ALL) {
+ /*
+ * Retrieve a valid dataspace for H5Dvlen_reclaim().
+ */
+ if ((mem_space = H5Dget_space(did)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ close_mem_space = TRUE;
+
+ if (H5Sselect_all(mem_space) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ }
- /* Get size of string array */
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- wdata = (hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL_asstr: buf length < 0");
+ }
- if (wdata == NULL) {
- h5JNIFatalError(env, "H5DwriteVL_asstr: failed to allocate buff for write");
- } /* end if */
- else {
- for (i = 0; i < n; ++i) {
- jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer");
+
+ for (i = 0; i < (size_t) n; ++i) {
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (utf8) {
- h5str_vlconvert(utf8, did, tid, wdata+i, 0);
- } /* end if */
+ /*
+ * If the string object was NULL, skip it.
+ */
+ HDmemset(&(((char *) writeBuf)[i * typeSize]), 0, typeSize);
+ continue;
+ }
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for (i = 0; i < size; ++i) */
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
- status = H5Dwrite(did, tid, mem_sid, file_sid, xfer_plist_id, wdata);
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_asstr: failed to pin string buffer");
- /* now free memory*/
- for (i = 0; i < n; i++) {
- if(wdata+i) {
- HDfree(wdata+i);
- } /* end if */
- } /* end for */
- HDfree(wdata);
+ /*
+ * TODO: If the string isn't a copy, we should probably make
+ * one before destroying it with h5str_convert.
+ */
+
+ if (!h5str_convert(ENVONLY, (char **) &utf8, did, tid, &(((char *) writeBuf)[i * typeSize]), 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ } /* end for (i = 0; i < size; ++i) */
+
+ if ((status = H5Dwrite(did, tid, mem_sid, file_sid, xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (utf8)
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ if (writeBuf) {
+ H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, writeBuf);
+ HDfree(writeBuf);
+ }
+ if (close_mem_space)
+ H5Sclose(mem_space);
return status;
} /* end H5DwriteVL_asstr */
@@ -1440,79 +1578,28 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings
(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- htri_t isVlenStr=0;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Dwrite_VLStrings: buf is NULL");
- } /* end if */
- else {
- isVlenStr = H5Tis_variable_str((hid_t)mem_type_id);
-
- if (isVlenStr) {
- status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id,
- (hid_t)xfer_plist_id, buf);
- } /* end if */
- else
- h5badArgument(env, "H5Dwrite_VLStrings: type is not variable length String");
- } /* end else */
+ htri_t isVlenStr = 0;
+ herr_t status = FAIL;
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings */
+ UNUSED(clss);
-herr_t
-H5DwriteVL_str
- (JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t xfer_plist_id, jobjectArray buf)
-{
- herr_t status = -1;
- char **wdata;
- jsize size;
- jsize i;
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_VLStrings: write buffer is NULL");
- size = ENVPTR->GetArrayLength(ENVPAR (jarray) buf);
- wdata = (char**)HDmalloc((size_t)size * sizeof (char*));
+ if ((isVlenStr = H5Tis_variable_str((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (!wdata) {
- h5JNIFatalError(env, "H5DwriteVL_str: cannot allocate buffer");
+ if (isVlenStr) {
+ if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
+ (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
} /* end if */
- else {
- HDmemset(wdata, 0, (size_t)size * sizeof(char*));
- for (i = 0; i < size; ++i) {
- jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray)buf, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
-
- if (utf8) {
- wdata[i] = (char*)HDmalloc((size_t)length + 1);
- if (wdata[i]) {
- HDmemset(wdata[i], 0, (size_t)length + 1);
- HDstrncpy(wdata[i], utf8, (size_t)length + 1);
- } /* end if */
- } /* end if */
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for (i = 0; i < size; ++i) */
-
- status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, wdata);
-
- /* now free memory*/
- for (i = 0; i < size; i++) {
- if(wdata[i]) {
- HDfree(wdata[i]);
- } /* end if */
- } /* end for */
- HDfree(wdata);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ else
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_VLStrings: datatype is not variable length String");
- return status;
-} /* end H5DwriteVL_str */
+done:
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings */
/*
* Class: hdf_hdf5lib_H5
@@ -1525,49 +1612,52 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref
jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = -1;
- h5str_t h5str;
- size_t size;
- hdset_reg_ref_t *ref_data;
- jint i;
- jint n;
- jstring jstr;
+ hdset_reg_ref_t *ref_data = NULL;
+ h5str_t h5str;
+ jstring jstr;
+ jsize i, n;
+ herr_t status = FAIL;
- hid_t region = -1;
- hid_t did = (hid_t) dataset_id;
- hid_t tid = (hid_t) mem_type_id;
- hid_t mem_sid = (hid_t) mem_space_id;
- hid_t file_sid = (hid_t) file_space_id;
+ UNUSED(clss);
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- size = sizeof(hdset_reg_ref_t); /*H5Tget_size(tid);*/
- ref_data = (hdset_reg_ref_t*)HDmalloc(size * (size_t)n);
+ HDmemset(&h5str, 0, sizeof(h5str_t));
- if (ref_data == NULL) {
- h5JNIFatalError(env, "H5Dread_reg_ref: failed to allocate buff for read");
- return -1;
- } /* end if */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_reg_ref: buf length < 0");
+ }
- status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, ref_data);
+ if (NULL == (ref_data = (hdset_reg_ref_t *) HDmalloc((size_t)n * sizeof(hdset_reg_ref_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer");
- if (status < 0) {
- HDfree(ref_data);
- h5JNIFatalError(env, "H5Dread_reg_ref: failed to read data");
- return -1;
- } /* end if */
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, xfer_plist_id, ref_data)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- HDmemset(&h5str, 0, sizeof(h5str_t));
h5str_new(&h5str, 1024);
- for (i=0; i<n; i++) {
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate buffer");
+
+ for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
- h5str_sprintf(&h5str, did, tid, ref_data[i], 0, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
+ if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, &ref_data[i], 0, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
} /* end for */
- h5str_free(&h5str);
- HDfree(ref_data);
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (ref_data)
+ HDfree(ref_data);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref */
@@ -1582,17 +1672,19 @@ Java_hdf_hdf5lib_H5__1H5Dcreate2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
jlong space_id, jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
{
- hid_t dset_id = -1;
- const char *fileName;
+ const char *dsetName = NULL;
+ hid_t dset_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- dset_id = H5Dcreate2((hid_t)loc_id, fileName, (hid_t)type_id, (hid_t)space_id, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
- if (dset_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dcreate2: dataset name not pinned");
+
+ if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dsetName)
+ UNPIN_JAVA_STRING(ENVONLY, name, dsetName);
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dcreate2 */
@@ -1606,17 +1698,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dopen2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist)
{
- hid_t dset_id = -1;
- const char *fileName;
+ const char *dsetName = NULL;
+ hid_t dset_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- dset_id = H5Dopen2((hid_t)loc_id, fileName, (hid_t)access_plist);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
- if (dset_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dopen2: dataset name not pinned");
+
+ if ((dset_id = H5Dopen2((hid_t)loc_id, dsetName, (hid_t)access_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dsetName)
+ UNPIN_JAVA_STRING(ENVONLY, name, dsetName);
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dopen2 */
@@ -1630,12 +1724,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Dcreate_1anon
(JNIEnv *env, jclass clss, jlong loc_id, jlong type_id, jlong space_id, jlong dcpl_id, jlong dapl_id)
{
- hid_t dset_id = -1;
+ hid_t dset_id = H5I_INVALID_HID;
- dset_id = H5Dcreate_anon((hid_t)loc_id, (hid_t)type_id, (hid_t)space_id, (hid_t)dcpl_id, (hid_t)dapl_id);
- if (dset_id < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((dset_id = H5Dcreate_anon((hid_t)loc_id, (hid_t)type_id, (hid_t)space_id, (hid_t)dcpl_id, (hid_t)dapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)dset_id;
} /* end Java_hdf_hdf5lib_H5__1H5Dcreate_1anon */
@@ -1650,9 +1746,12 @@ Java_hdf_hdf5lib_H5_H5Dget_1space_1status
{
H5D_space_status_t space_status = H5D_SPACE_STATUS_ERROR;
+ UNUSED(clss);
+
if (H5Dget_space_status((hid_t)loc_id, &space_status) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)space_status;
} /* end Java_hdf_hdf5lib_H5_H5Dget_1space_1status */
@@ -1665,12 +1764,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Dget_1access_1plist
(JNIEnv *env, jclass clss, jlong loc_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Dget_access_plist((hid_t)loc_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Dget_access_plist((hid_t)loc_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Dget_1access_1plist */
@@ -1685,10 +1786,12 @@ Java_hdf_hdf5lib_H5_H5Dget_1offset
{
haddr_t offset = HADDR_UNDEF;
- offset = H5Dget_offset((hid_t)loc_id);
- if (offset == HADDR_UNDEF)
- h5libraryError(env);
+ UNUSED(clss);
+ if (HADDR_UNDEF == (offset = H5Dget_offset((hid_t)loc_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)offset;
} /* end Java_hdf_hdf5lib_H5_H5Dget_1offset */
@@ -1701,12 +1804,15 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size
(JNIEnv *env, jclass clss, jlong dataset_id, jlong type_id, jlong space_id)
{
- hsize_t sz = 0;
+ hsize_t sz = 0;
+
+ UNUSED(clss);
- if (H5Dvlen_get_buf_size((hid_t)dataset_id, (hid_t)type_id, (hid_t)space_id, &sz) < 0)
- h5libraryError(env);
+ if (H5Dvlen_get_buf_size((hid_t)dataset_id, (hid_t)type_id, (hid_t)space_id, &sz) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jlong)sz;
+done:
+ return (jlong)sz;
} /* end Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size_1long */
/*
@@ -1718,49 +1824,36 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Dfill
(JNIEnv *env, jclass clss, jbyteArray fill, jlong fill_type_id, jbyteArray buf, jlong buf_type_id, jlong space_id)
{
- herr_t status;
- jbyte *fillP;
- jbyte *buffP;
jboolean isCopy1;
jboolean isCopy2;
+ herr_t status;
+ jbyte *fillP = NULL;
+ jbyte *buffP = NULL;
+ UNUSED(clss);
- if (buf == NULL) {
- h5nullArgument(env, "H5Dfill: buf is NULL");
- } /* end if */
- else {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy2);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Dfill: buf not pinned");
- } /* end if */
- else {
- if(fill) {
- fillP = ENVPTR->GetByteArrayElements(ENVPAR fill, &isCopy1);
- if (fillP == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, JNI_ABORT);
- h5JNIFatalError( env, "H5Dfill: fill not pinned");
- return;
- } /* end if */
- } /* end if */
- else
- fillP = NULL;
-
- status = H5Dfill((const void*)fillP, (hid_t)fill_type_id, (void*)buffP, (hid_t)buf_type_id, (hid_t)space_id);
- if(fillP) {
- /* free the buffer without copying back */
- ENVPTR->ReleaseByteArrayElements(ENVPAR fill, fillP, JNI_ABORT);
- } /* end if */
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- if (isCopy2 == JNI_TRUE) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, 0);
- } /* end if */
- } /* end else */
- }
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dfill: buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, buffP, &isCopy2, "H5Dfill: buffer not pinned");
+
+ if (fill) {
+ PIN_BYTE_ARRAY(ENVONLY, fill, fillP, &isCopy1, "H5Dfill: fill buffer not pinned");
}
+
+ if ((status = H5Dfill((const void *)fillP, (hid_t)fill_type_id, (void *)buffP, (hid_t)buf_type_id, (hid_t)space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (fillP) {
+ UNPIN_BYTE_ARRAY(ENVONLY, fill, fillP, JNI_ABORT);
+ fillP = NULL;
+ }
+
+done:
+ if (fillP)
+ UNPIN_BYTE_ARRAY(ENVONLY, fill, fillP, JNI_ABORT);
+ if (buffP)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, buffP, (status < 0) ? JNI_ABORT : 0);
} /* end Java_hdf_hdf5lib_H5_H5Dfill */
/*
@@ -1772,106 +1865,97 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Dset_1extent
(JNIEnv *env, jclass clss, jlong loc_id, jlongArray buf)
{
+ jboolean isCopy;
+ hsize_t *dims = NULL;
herr_t status;
- hsize_t *dims;
- jlong *buffP;
jsize rank;
- jboolean isCopy;
+ jlong *dimsBuf = NULL;
int i = 0;
- if (buf == NULL) {
- h5nullArgument(env, "H5Dset_extent: buf is NULL");
- } /* end if */
- else {
- rank = ENVPTR->GetArrayLength(ENVPAR buf);
- if (rank <= 0) {
- h5JNIFatalError(env, "H5Dset_extent: rank <=0");
- } /* end if */
- else {
- buffP = ENVPTR->GetLongArrayElements(ENVPAR buf, &isCopy);
- if (buffP == NULL) {
- h5JNIFatalError( env, "H5Dset_extent: buf not pinned");
- } /* end if */
- else {
- dims = (hsize_t*)HDmalloc((size_t)rank * sizeof(hsize_t));
- for (i = 0; i< rank; i++)
- dims[i] = (hsize_t)buffP[i];
-
- status = H5Dset_extent((hid_t)loc_id, (hsize_t*)dims);
-
- HDfree (dims);
-
- /* free the buffer without copying back */
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, buffP, JNI_ABORT);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- } /* end else */
- } /* end else */
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dset_extent: buffer is NULL");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dset_extent: buf length <= 0");
}
+
+ PIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, &isCopy, "H5Dset_extent: buffer not pinned");
+
+ if (NULL == (dims = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer");
+
+ for (i = 0; i < rank; i++)
+ dims[i] = (hsize_t)dimsBuf[i];
+
+ if ((status = H5Dset_extent((hid_t)loc_id, (hsize_t *)dims)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dims)
+ HDfree(dims);
+ if (dimsBuf)
+ UNPIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, JNI_ABORT);
} /* end Java_hdf_hdf5lib_H5_H5Dset_1extent */
static herr_t
H5D_iterate_cb
- (void* elem, hid_t elem_id, unsigned ndim, const hsize_t *point, void *cb_data) {
- JNIEnv *cbenv;
- jint status;
- jclass cls;
- jmethodID mid;
- jbyteArray elemArray;
- jlongArray pointArray;
- jsize size;
+ (void *elem, hid_t elem_id, unsigned ndim, const hsize_t *point, void *cb_data) {
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
+ jbyteArray elemArray;
+ jlongArray pointArray;
+ jmethodID mid;
+ jobject visit_callback = wrapper->visit_callback;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = FAIL;
+ jsize size;
+ void *op_data = (void *)wrapper->op_data;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5D_iterate_cb: failed to attach current thread to JVM");
+ }
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls == 0) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "([BJI[JLhdf/hdf5lib/callbacks/H5D_iterate_t;)I");
- if (mid == 0) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (elem == NULL) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- if (point == NULL) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "([BJI[JLhdf/hdf5lib/callbacks/H5D_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- size = (jsize)H5Tget_size(elem_id);
- elemArray = CBENVPTR->NewByteArray(CBENVPAR size);
- if (elemArray == NULL) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- CBENVPTR->SetByteArrayRegion(CBENVPAR elemArray, 0, size, (jbyte *)elem);
+ if (NULL == elem)
+ H5_NULL_ARGUMENT_ERROR(CBENVONLY, "H5D_iterate_cb: element buffer is NULL");
+ if (NULL == point)
+ H5_NULL_ARGUMENT_ERROR(CBENVONLY, "H5D_iterate_cb: point is NULL");
- pointArray = CBENVPTR->NewLongArray(CBENVPAR 2);
- if (pointArray == NULL) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- CBENVPTR->SetLongArrayRegion(CBENVPAR pointArray, 0, 2, (const jlong *)point);
+ if (!(size = (jsize)H5Tget_size(elem_id)))
+ H5_LIBRARY_ERROR(CBENVONLY);
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, (void*)elemArray, elem_id, ndim, pointArray, op_data);
+ if (NULL == (elemArray = CBENVPTR->NewByteArray(CBENVONLY, size)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- CBENVPTR->GetByteArrayRegion(CBENVPAR elemArray, 0, size, (jbyte *)elem);
+ CBENVPTR->SetByteArrayRegion(CBENVONLY, elemArray, 0, size, (jbyte *)elem);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- JVMPTR->DetachCurrentThread(JVMPAR);
+ if (NULL == (pointArray = CBENVPTR->NewLongArray(CBENVONLY, 2)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return status;
+ CBENVPTR->SetLongArrayRegion(CBENVONLY, pointArray, 0, 2, (const jlong *)point);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, (void *)elemArray, elem_id, ndim, pointArray, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ CBENVPTR->GetByteArrayRegion(CBENVONLY, elemArray, 0, size, (jbyte *)elem);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
+ return (herr_t)status;
} /* end H5D_iterate_cb */
/*
@@ -1884,41 +1968,31 @@ Java_hdf_hdf5lib_H5_H5Diterate
(JNIEnv *env, jclass clss, jbyteArray buf, jlong buf_type, jlong space,
jobject callback_op, jobject op_data)
{
- herr_t status = -1;
- jboolean isCopy;
- jbyte *buffP;
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+ jboolean isCopy;
+ jbyte *iterBuf = NULL;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if (op_data == NULL) {
- h5nullArgument(env, "H5Diterate: op_data is NULL");
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Diterate: callback_op is NULL");
- } /* end if */
- else if (buf == NULL) {
- h5nullArgument(env, "H5Diterate: buf is NULL");
- } /* end if */
- else {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Diterate: buf not pinned");
- } /* end if */
- else {
- status = H5Diterate((void*)buffP, (hid_t)buf_type, (hid_t)space, (H5D_operator_t)H5D_iterate_cb, (void*)&wrapper);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- if (isCopy == JNI_TRUE) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, buffP, 0);
- } /* end if */
- } /* end else */
- } /* end else */
- }
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Diterate: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Diterate: callback_op is NULL");
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Diterate: buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, &isCopy, "H5Diterate: buffer not pinned");
+
+ if ((status = H5Diterate((void *)iterBuf, (hid_t)buf_type, (hid_t)space, (H5D_operator_t)H5D_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (iterBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, (status < 0) ? (JNI_ABORT) : ((isCopy == JNI_TRUE) ? 0 : JNI_ABORT));
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Diterate */
@@ -1932,8 +2006,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Dflush
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Dflush((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
}
/*
@@ -1945,11 +2024,14 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Drefresh
(JNIEnv *env, jclass clss, jlong loc_id)
{
- if (H5Drefresh((hid_t)loc_id) < 0)
- h5libraryError(env);
-}
+ UNUSED(clss);
+ if (H5Drefresh((hid_t)loc_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
+ return;
+}
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/java/src/jni/h5eImp.c b/java/src/jni/h5eImp.c
index 9c80461..1c5a5a9 100644
--- a/java/src/jni/h5eImp.c
+++ b/java/src/jni/h5eImp.c
@@ -39,6 +39,9 @@ extern "C" {
#include "h5jni.h"
#include "h5eImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -46,20 +49,6 @@ typedef struct _cb_wrapper {
jobject op_data;
} cb_wrapper;
-#ifdef __cplusplus
- #define CBENVPTR (cbenv)
- #define CBENVPAR
- #define JVMPTR (jvm)
- #define JVMPAR
- #define JVMPAR2
-#else /* __cplusplus */
- #define CBENVPTR (*cbenv)
- #define CBENVPAR cbenv,
- #define JVMPTR (*jvm)
- #define JVMPAR jvm
- #define JVMPAR2 jvm,
-#endif /* __cplusplus */
-
/********************/
/* Local Prototypes */
/********************/
@@ -77,12 +66,15 @@ Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2
{
unsigned int is_stack = 0;
- if (stk_id < 0) {
- h5badArgument(env, "H5Eauto_is_v2: invalid argument");
- } /* end if */
- else if (H5Eauto_is_v2((hid_t)stk_id, &is_stack) < 0)
- h5libraryError(env);
+ UNUSED(cls);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eauto_is_v2: invalid stack ID");
+ if (H5Eauto_is_v2((hid_t)stk_id, &is_stack) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jboolean)is_stack;
} /* end Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2 */
@@ -95,20 +87,27 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Eregister_1class
(JNIEnv *env, jclass cls, jstring cls_name, jstring lib_name, jstring version)
{
- hid_t ret_val = -1;
- const char* the_cls_name;
- const char* the_lib_name;
- const char* the_version;
+ const char* the_cls_name = NULL;
+ const char* the_lib_name = NULL;
+ const char* the_version = NULL;
+ hid_t ret_val = H5I_INVALID_HID;
- PIN_JAVA_STRING_THREE(cls_name, the_cls_name, lib_name, the_lib_name, version, the_version);
- if (the_cls_name != NULL && the_lib_name != NULL && the_version != NULL) {
- ret_val = H5Eregister_class(the_cls_name, the_lib_name, the_version);
+ UNUSED(cls);
- UNPIN_JAVA_STRING_THREE(cls_name, the_cls_name, lib_name, the_lib_name, version, the_version);
+ PIN_JAVA_STRING(ENVONLY, cls_name, the_cls_name, NULL, "H5Eregister_class: class name not pinned");
+ PIN_JAVA_STRING(ENVONLY, lib_name, the_lib_name, NULL, "H5Eregister_class: lib name not pinned");
+ PIN_JAVA_STRING(ENVONLY, version, the_version, NULL, "H5Eregister_class: version string not pinned");
- if (ret_val < 0)
- h5libraryError(env);
- }
+ if ((ret_val = H5Eregister_class(the_cls_name, the_lib_name, the_version)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (the_version)
+ UNPIN_JAVA_STRING(ENVONLY, version, the_version);
+ if (the_lib_name)
+ UNPIN_JAVA_STRING(ENVONLY, lib_name, the_lib_name);
+ if (the_cls_name)
+ UNPIN_JAVA_STRING(ENVONLY, cls_name, the_cls_name);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eregister_1class */
@@ -122,11 +121,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eunregister_1class
(JNIEnv *env, jclass cls, jlong cls_id)
{
- if (cls_id < 0) {
- h5badArgument(env, "H5Eunregister_class: invalid argument");
- } /* end if */
- else if (H5Eunregister_class((hid_t)cls_id) < 0)
- h5libraryError(env);
+ UNUSED(cls);
+
+ if (cls_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eunregister_class: invalid error class ID");
+
+ if (H5Eunregister_class((hid_t)cls_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eunregister_1class */
/*
@@ -138,11 +142,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclose_1msg
(JNIEnv *env, jclass cls, jlong err_id)
{
- if (err_id < 0) {
- h5badArgument(env, "H5Eclose_msg: invalid argument");
- } /* end if */
- else if (H5Eclose_msg((hid_t)err_id) < 0)
- h5libraryError(env);
+ UNUSED(cls);
+
+ if (err_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclose_msg: invalid error message ID");
+
+ if (H5Eclose_msg((hid_t)err_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eclose_1msg */
/*
@@ -154,24 +163,23 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Ecreate_1msg
(JNIEnv *env, jclass cls, jlong err_id, jint msg_type, jstring err_msg)
{
- hid_t ret_val = -1;
- const char *the_err_msg;
H5E_type_t error_msg_type = (H5E_type_t)msg_type;
+ const char *the_err_msg = NULL;
+ hid_t ret_val = H5I_INVALID_HID;
- if (err_id < 0) {
- h5badArgument(env, "H5Ecreate_msg: invalid argument");
- } /* end if */
- else {
- PIN_JAVA_STRING(err_msg, the_err_msg);
- if (the_err_msg != NULL) {
- ret_val = H5Ecreate_msg((hid_t)err_id, error_msg_type, the_err_msg);
+ UNUSED(cls);
- UNPIN_JAVA_STRING(err_msg, the_err_msg);
+ if (err_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ecreate_msg: invalid error class ID");
- if (ret_val < 0)
- h5libraryError(env);
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, err_msg, the_err_msg, NULL, "H5Ecreate_msg: error message string not pinned");
+
+ if ((ret_val = H5Ecreate_msg((hid_t)err_id, error_msg_type, the_err_msg)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (the_err_msg)
+ UNPIN_JAVA_STRING(ENVONLY, err_msg, the_err_msg);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Ecreate_1msg */
@@ -185,12 +193,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Ecreate_1stack
(JNIEnv *env, jclass cls)
{
- hid_t ret_val = -1;
+ hid_t ret_val = H5I_INVALID_HID;
+
+ UNUSED(cls);
- ret_val = H5Ecreate_stack();
- if (ret_val < 0)
- h5libraryError(env);
+ if ((ret_val = H5Ecreate_stack()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Ecreate_1stack */
@@ -203,12 +213,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1current_1stack
(JNIEnv *env, jclass cls)
{
- hid_t ret_val = -1;
+ hid_t ret_val = H5I_INVALID_HID;
- ret_val = H5Eget_current_stack();
- if (ret_val < 0)
- h5libraryError(env);
+ UNUSED(cls);
+ if ((ret_val = H5Eget_current_stack()) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1current_1stack */
@@ -221,11 +233,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclose_1stack
(JNIEnv *env, jclass cls, jlong stk_id)
{
- if (stk_id < 0) {
- h5badArgument(env, "H5Eclose_stack: invalid argument");
- } /* end if */
- else if (H5Eclose_stack((hid_t)stk_id) < 0)
- h5libraryError(env);
+ UNUSED(cls);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclose_stack: invalid error stack ID");
+
+ if (H5Eclose_stack((hid_t)stk_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eclose_1stack */
/*
@@ -237,20 +254,24 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eprint2
(JNIEnv *env, jclass cls, jlong stk_id, jobject stream_obj)
{
- herr_t ret_val = -1;
+ herr_t ret_val = FAIL;
+
+ UNUSED(cls);
- if (stk_id < 0) {
- h5badArgument(env, "H5Eprint2: invalid argument");
- } /* end if */
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eprint2: invalid error stack ID");
+
+ if (!stream_obj) {
+ if ((ret_val = H5Eprint2((hid_t)stk_id, stdout)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
else {
- if(!stream_obj)
- ret_val = H5Eprint2((hid_t)stk_id, stdout);
- else
- ret_val = H5Eprint2((hid_t)stk_id, (FILE*)stream_obj);
-
- if (ret_val < 0)
- h5libraryError(env);
- } /* end else */
+ if ((ret_val = H5Eprint2((hid_t)stk_id, (FILE *)stream_obj)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eprint2 */
/*
@@ -262,43 +283,36 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1class_1name
(JNIEnv *env, jclass cls, jlong cls_id)
{
- char *namePtr;
- jstring str = NULL;
- ssize_t buf_size;
+ jstring str = NULL;
+ ssize_t buf_size;
+ char *namePtr = NULL;
+
+ UNUSED(cls);
+
+ if (cls_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: invalid error class ID");
+
+ /* Get the length of the name */
+ if ((buf_size = H5Eget_class_name((hid_t)cls_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!buf_size)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: no class name");
+
+ if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_class_name: malloc failed");
+
+ if ((H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ namePtr[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (namePtr)
+ HDfree(namePtr);
- if (cls_id < 0) {
- h5badArgument(env, "H5Eget_class_name: invalid argument");
- } /* end if */
- else {
- /* get the length of the name */
- buf_size = H5Eget_class_name((hid_t)cls_id, NULL, 0);
-
- if (buf_size < 0) {
- h5badArgument( env, "H5Eget_class_name: buf_size < 0");
- } /* end if */
- else if (buf_size == 0) {
- h5badArgument( env, "H5Eget_class_name: No class name");
- } /* end else if */
- else {
- buf_size++; /* add extra space for the null terminator */
- namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (namePtr == NULL) {
- h5outOfMemory( env, "H5Eget_class_name: malloc failed");
- } /* end if */
- else {
- buf_size = H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size);
-
- if (buf_size < 0) {
- HDfree(namePtr);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR namePtr);
- HDfree(namePtr);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1class_1name */
@@ -311,11 +325,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eset_1current_1stack
(JNIEnv *env, jclass cls, jlong stk_id)
{
- if (stk_id < 0) {
- h5badArgument(env, "H5Eset_current_stack: invalid argument");
- } /* end if */
- else if (H5Eset_current_stack((hid_t)stk_id) < 0)
- h5libraryError(env);
+ UNUSED(cls);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eset_current_stack: invalid error stack ID");
+
+ if (H5Eset_current_stack((hid_t)stk_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eset_1current_1stack */
/*
@@ -327,11 +346,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Epop
(JNIEnv *env, jclass cls, jlong stk_id, jlong count)
{
- if (stk_id < 0) {
- h5badArgument(env, "H5Epop: invalid argument");
- } /* end if */
- else if (H5Epop((hid_t)stk_id, (size_t)count) < 0)
- h5libraryError(env);
+ UNUSED(cls);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epop: invalid error stack ID");
+
+ if (H5Epop((hid_t)stk_id, (size_t)count) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Epop */
/*
@@ -344,35 +368,37 @@ Java_hdf_hdf5lib_H5_H5Epush2
(JNIEnv *env, jclass cls, jlong stk_id, jstring filename, jstring funcname,
jint linenumber, jlong class_id, jlong major_id, jlong minor_id, jstring err_desc)
{
- herr_t ret_val = -1;
- const char* fName;
- const char* fncName;
- const char* errMsg;
-
- if (stk_id < 0) {
- h5badArgument(env, "H5Epush: invalid argument");
- } /* end if */
- else if (class_id < 0) {
- h5badArgument(env, "H5Epush: invalid class_id argument");
- } /* end else if */
- else if (major_id < 0) {
- h5badArgument(env, "H5Epush: invalid major_id argument");
- } /* end else if */
- else if (minor_id < 0) {
- h5badArgument(env, "H5Epush: invalid minor_id argument");
- } /* end else if */
- else {
- PIN_JAVA_STRING_THREE(filename, fName, funcname, fncName, err_desc, errMsg);
- if (fName != NULL && fncName != NULL && errMsg != NULL) {
- ret_val = H5Epush2((hid_t)stk_id, fName, fncName, (unsigned)linenumber, (hid_t)class_id,
- (hid_t)major_id, (hid_t)minor_id, errMsg);
-
- UNPIN_JAVA_STRING_THREE(filename, fName, funcname, fncName, err_desc, errMsg);
-
- if (ret_val < 0)
- h5libraryError(env);
- }
- } /* end else */
+ const char *fName = NULL;
+ const char *fncName = NULL;
+ const char *errMsg = NULL;
+ herr_t ret_val = FAIL;
+
+ UNUSED(cls);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush: invalid error stack ID");
+ if (class_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush: invalid error class ID");
+ if (major_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush: invalid major error class ID");
+ if (minor_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush: invalid minor error class ID");
+
+ PIN_JAVA_STRING(ENVONLY, filename, fName, NULL, "H5Epush2: filename not pinned");
+ PIN_JAVA_STRING(ENVONLY, funcname, fncName, NULL, "H5Epush2: function name not pinned");
+ PIN_JAVA_STRING(ENVONLY, err_desc, errMsg, NULL, "H5Epush2: error message not pinned");
+
+ if ((ret_val = H5Epush2((hid_t)stk_id, fName, fncName, (unsigned)linenumber, (hid_t)class_id,
+ (hid_t)major_id, (hid_t)minor_id, errMsg)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (errMsg)
+ UNPIN_JAVA_STRING(ENVONLY, err_desc, errMsg);
+ if (fncName)
+ UNPIN_JAVA_STRING(ENVONLY, funcname, fncName);
+ if (fName)
+ UNPIN_JAVA_STRING(ENVONLY, filename, fName);
} /* end Java_hdf_hdf5lib_H5_H5Epush2 */
/*
@@ -384,11 +410,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclear2
(JNIEnv *env, jclass cls, jlong stk_id)
{
- if (stk_id < 0) {
- h5badArgument(env, "H5Eclear2: invalid argument");
- } /* end if */
- else if (H5Eclear2((hid_t)stk_id) < 0)
- h5libraryError(env);
+ UNUSED(cls);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclear2: invalid error stack ID");
+
+ if (H5Eclear2((hid_t)stk_id) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Eclear2 */
/*
@@ -400,57 +431,45 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1msg
(JNIEnv *env, jclass cls, jlong msg_id, jintArray error_msg_type_list)
{
- char *namePtr;
- jstring str = NULL;
- jboolean isCopy;
- ssize_t buf_size;
- jint *theArray;
- H5E_type_t error_msg_type;
-
- if (msg_id < 0) {
- h5badArgument(env, "H5Eget_msg: invalid argument");
- } /* end if */
- else if (error_msg_type_list == NULL) {
- h5nullArgument(env, "H5Eget_msg: error_msg_type_list is NULL");
- } /* end if */
- else {
- /* get the length of the name */
- buf_size = H5Eget_msg((hid_t)msg_id, NULL, NULL, 0);
-
- if ((buf_size < 0) || (buf_size == 0)) {
- h5JNIFatalError(env, "H5Eget_msg: Invalid message");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (namePtr == NULL) {
- h5outOfMemory(env, "H5Eget_msg: malloc failed");
- } /* end if */
- else {
- theArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR error_msg_type_list, &isCopy);
- if (theArray == NULL) {
- HDfree(namePtr);
- h5JNIFatalError(env, "H5Eget_msg: error_msg_type_list not pinned");
- } /* end if */
- else {
- buf_size = H5Eget_msg((hid_t)msg_id, &error_msg_type, (char *)namePtr, (size_t)buf_size);
-
- if (buf_size < 0) {
- HDfree(namePtr);
- ENVPTR->ReleaseIntArrayElements(ENVPAR error_msg_type_list, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = error_msg_type;
- ENVPTR->ReleaseIntArrayElements(ENVPAR error_msg_type_list, theArray, 0);
-
- str = ENVPTR->NewStringUTF(ENVPAR namePtr);
- HDfree(namePtr);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ H5E_type_t error_msg_type;
+ jstring str = NULL;
+ ssize_t buf_size;
+ jint *theArray = NULL;
+ char *namePtr = NULL;
+
+ UNUSED(cls);
+
+ if (msg_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: invalid error message ID");
+ if (NULL == error_msg_type_list)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: error_msg_type_list is NULL");
+
+ /* Get the length of the name */
+ if ((buf_size = H5Eget_msg((hid_t)msg_id, NULL, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!buf_size)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: invalid message");
+
+ if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: malloc failed");
+
+ PIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, NULL, "H5Eget_msg: error_msg_type_list not pinned");
+
+ if ((H5Eget_msg((hid_t)msg_id, &error_msg_type, (char *)namePtr, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ namePtr[buf_size] = '\0';
+
+ theArray[0] = error_msg_type;
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, 0);
+ if (namePtr)
+ HDfree(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1msg */
@@ -466,14 +485,15 @@ Java_hdf_hdf5lib_H5_H5Eget_1num
{
ssize_t ret_val = -1;
- if (stk_id < 0) {
- h5badArgument(env, "H5Eget_num: invalid argument");
- } /* end if */
- else {
- ret_val = H5Eget_num((hid_t)stk_id);
- if (ret_val < 0)
- h5libraryError(env);
- } /* end else */
+ UNUSED(cls);
+
+ if (stk_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_num: invalid error stack ID");
+
+ if ((ret_val = H5Eget_num((hid_t)stk_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1num */
@@ -481,52 +501,67 @@ static herr_t
H5E_walk_cb
(int nindx, const H5E_error2_t *info, void *cb_data)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str1, str2, str3;
- jmethodID constructor;
- jvalue args[7];
- jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(ILhdf/hdf5lib/structs/H5E_error2_t;Lhdf/hdf5lib/callbacks/H5E_walk_t;)I");
- if (mid != 0) {
- args[0].j = info->cls_id;
- args[1].j = info->maj_num;
- args[2].j = info->min_num;
- args[3].i = (jint)info->line;
- str1 = CBENVPTR->NewStringUTF(CBENVPAR info->func_name);
- args[4].l = str1;
- str2 = CBENVPTR->NewStringUTF(CBENVPAR info->file_name);
- args[5].l = str2;
- str3 = CBENVPTR->NewStringUTF(CBENVPAR info->desc);
- args[6].l = str3;
- // get a reference to your class if you don't have it already
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5E_error2_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V");
- if (constructor != 0) {
- cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (cb_info_t == NULL) {
- printf("FATAL ERROR: hdf/hdf5lib/structs/H5E_error2_t: Creation failed\n");
- }
- else {
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, nindx, cb_info_t, op_data);
- }
- } /* end if (constructor != 0) */
- } /* end if(cls != 0) */
- } /* end if (mid != 0) */
- } /* end if (cls != 0) */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
+ jmethodID constructor;
+ jmethodID mid;
+ jobject visit_callback = wrapper->visit_callback;
+ jstring str1, str2, str3;
+ jobject cb_info_t = NULL;
+ jvalue args[7];
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ void *op_data = (void *)wrapper->op_data;
+ jint status = FAIL;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5E_walk_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(ILhdf/hdf5lib/structs/H5E_error2_t;Lhdf/hdf5lib/callbacks/H5E_walk_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[0].j = info->cls_id;
+ args[1].j = info->maj_num;
+ args[2].j = info->min_num;
+ args[3].i = (jint)info->line;
+
+ if (NULL == (str1 = CBENVPTR->NewStringUTF(CBENVONLY, info->func_name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[4].l = str1;
+
+ if (NULL == (str2 = CBENVPTR->NewStringUTF(CBENVONLY, info->file_name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[5].l = str2;
+
+ if (NULL == (str3 = CBENVPTR->NewStringUTF(CBENVONLY, info->desc)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[6].l = str3;
+
+ /* Get a reference to your class if you don't have it already */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5E_error2_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, nindx, cb_info_t, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (CBENVONLY)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
return (herr_t)status;
} /* end H5E_walk_cb */
@@ -539,15 +574,23 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Ewalk2
(JNIEnv *env, jclass cls, jlong stk_id, jlong direction, jobject callback_op, jobject op_data)
{
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+
+ UNUSED(cls);
+
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ewalk2: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ewalk2: callback_op is NULL");
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ if (H5Ewalk2(stk_id, (H5E_direction_t)direction, (H5E_walk2_t)H5E_walk_cb, (void *)&wrapper) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Ewalk2: op_data or callback_op is NULL");
- } /* end if */
- else if (H5Ewalk2(stk_id, (H5E_direction_t)direction, (H5E_walk2_t)H5E_walk_cb, (void*)&wrapper) < 0)
- h5libraryError(env);
+done:
+ return;
} /* end iJava_hdf_hdf5lib_H5_H5Ewalk2f */
#ifdef __cplusplus
diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c
index 80adffb..624c788 100644
--- a/java/src/jni/h5fImp.c
+++ b/java/src/jni/h5fImp.c
@@ -28,7 +28,10 @@ extern "C" {
#include "h5fImp.h"
#include "h5util.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -39,18 +42,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fopen
(JNIEnv *env, jclass clss, jstring name, jint flags, jlong access_id)
{
- hid_t status = -1;
- const char *fileName;
+ const char *fileName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Fopen(fileName, (unsigned)flags, (hid_t)access_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fopen: file name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Fopen(fileName, (unsigned)flags, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fopen */
@@ -64,18 +68,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fcreate
(JNIEnv *env, jclass clss, jstring name, jint flags, jlong create_id, jlong access_id)
{
- hid_t status = -1;
- const char *fileName;
+ const char *fileName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Fcreate(fileName, (unsigned)flags, create_id, access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fcreate: file name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Fcreate(fileName, (unsigned)flags, create_id, access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fcreate */
@@ -89,12 +94,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fflush
(JNIEnv *env, jclass clss, jlong object_id, jint scope)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Fflush((hid_t)object_id, (H5F_scope_t)scope );
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Fflush((hid_t)object_id, (H5F_scope_t)scope)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Fflush */
@@ -107,34 +114,29 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1name
(JNIEnv *env, jclass cls, jlong file_id)
{
- char *namePtr;
- jstring str = NULL;
- ssize_t buf_size;
-
- /* get the length of the name */
- buf_size = H5Fget_name((hid_t)file_id, NULL, 0);
-
- if (buf_size <= 0) {
- h5badArgument(env, "H5Fget_name: buf_size <= 0");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (namePtr == NULL) {
- h5outOfMemory(env, "H5Fget_name: malloc failed");
- } /* end if */
- else {
- buf_size = H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size);
- if (buf_size < 0) {
- HDfree(namePtr);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR namePtr);
- HDfree(namePtr);
- }/* end else */
- }/* end else */
- }/* end else */
+ jstring str = NULL;
+ ssize_t buf_size;
+ char *namePtr = NULL;
+
+ UNUSED(cls);
+
+ /* Get the length of the name */
+ if ((buf_size = H5Fget_name((hid_t)file_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_name: malloc failed");
+
+ if ((H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ namePtr[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (namePtr)
+ HDfree(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1name */
@@ -148,24 +150,26 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fis_1hdf5
(JNIEnv *env, jclass clss, jstring name)
{
+ const char *fileName = NULL;
htri_t bval = JNI_FALSE;
+
+ UNUSED(clss);
+
#ifdef H5_NO_DEPRECATED_SYMBOLS
- h5unimplemented(env, "H5Fis_hdf5: not implemented");
-#else
- const char *fileName;
+ H5_UNIMPLEMENTED(ENVONLY, "H5Fis_hdf5: not implemented");
+#endif
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- bval = H5Fis_hdf5(fileName);
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fis_hdf5: file name not pinned");
- UNPIN_JAVA_STRING(name, fileName);
+ if ((bval = H5Fis_hdf5(fileName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
-#endif
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Fis_1hdf5 */
@@ -178,20 +182,21 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fis_1accessible
(JNIEnv *env, jclass clss, jstring name, jlong file_id)
{
+ const char *fileName = NULL;
htri_t bval = JNI_FALSE;
- const char *fileName;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- bval = H5Fis_accessible(fileName, (hid_t)file_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fis_accessible: file name not pinned");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ if ((bval = H5Fis_accessible(fileName, (hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Fis_1accessible */
@@ -205,12 +210,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist
(JNIEnv *env, jclass clss, jlong file_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Fget_create_plist((hid_t)file_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Fget_create_plist((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist */
@@ -223,12 +230,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist
(JNIEnv *env, jclass clss, jlong file_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Fget_access_plist((hid_t)file_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Fget_access_plist((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist */
@@ -243,9 +252,12 @@ Java_hdf_hdf5lib_H5_H5Fget_1intent
{
unsigned intent = 0;
+ UNUSED(cls);
+
if (H5Fget_intent((hid_t)file_id, &intent) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)intent;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1intent */
@@ -258,14 +270,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Fclose
(JNIEnv *env, jclass clss, jlong file_id)
{
- herr_t status = -1;
+ herr_t status = FAIL;
- if (file_id > 0)
- status = H5Fclose((hid_t)file_id );
+ UNUSED(clss);
- if (status < 0)
- h5libraryError(env);
+ if ((status = H5Fclose((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fclose */
@@ -278,18 +290,19 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fmount
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong child_id, jlong plist_id)
{
- herr_t status = -1;
- const char *fileName;
+ const char *fileName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Fmount((hid_t)loc_id, fileName, (hid_t)child_id, (hid_t)plist_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fmount: file name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Fmount((hid_t)loc_id, fileName, (hid_t)child_id, (hid_t)plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Fmount */
@@ -303,18 +316,19 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Funmount
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
- herr_t status = -1;
- const char *fileName;
+ const char *fileName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Funmount((hid_t)loc_id, fileName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, fileName);
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Funmount: file name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Funmount((hid_t)loc_id, fileName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Funmount */
@@ -328,11 +342,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1freespace
(JNIEnv *env, jclass cls, jlong file_id)
{
- hssize_t ret_val = H5Fget_freespace((hid_t)file_id);
+ hssize_t ret_val = -1;
+
+ UNUSED(cls);
- if (ret_val < 0)
- h5libraryError(env);
+ if ((ret_val = H5Fget_freespace((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1freespace */
@@ -345,12 +362,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Freopen
(JNIEnv *env, jclass clss, jlong file_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Freopen((hid_t)file_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Freopen((hid_t)file_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Freopen */
@@ -364,47 +383,40 @@ Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids
(JNIEnv *env, jclass cls, jlong file_id, jint types, jlong maxObjs,
jlongArray obj_id_list)
{
- ssize_t ret_val = -1;
- jlong *obj_id_listP;
- jboolean isCopy;
- hid_t *id_list;
- size_t rank;
- size_t i;
-
- if (obj_id_list == NULL) {
- h5nullArgument(env, "H5Fget_obj_ids: obj_id_list is NULL");
- } /* end if */
- else {
- obj_id_listP = ENVPTR->GetLongArrayElements(ENVPAR obj_id_list, &isCopy);
- if (obj_id_listP == NULL) {
- h5JNIFatalError(env, "H5Fget_obj_ids: obj_id_list not pinned");
- } /* end if */
- else {
- rank = (size_t)ENVPTR->GetArrayLength(ENVPAR obj_id_list);
-
- id_list = (hid_t *)HDmalloc(rank * sizeof(hid_t));
- if (id_list == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, JNI_ABORT);
- h5JNIFatalError(env, "H5Fget_obj_ids: obj_id_list not converted to hid_t");
- } /* end if */
- else {
- ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list);
-
- if (ret_val < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, JNI_ABORT);
- HDfree(id_list);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < rank; i++) {
- obj_id_listP[i] = (jlong)id_list[i];
- } /* end for */
- HDfree(id_list);
- ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ ssize_t ret_val = -1;
+ size_t i;
+ jsize rank;
+ jlong *obj_id_listP = NULL;
+ hid_t *id_list = NULL;
+
+ UNUSED(cls);
+
+ if (NULL == obj_id_list)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, obj_id_list, obj_id_listP, &isCopy, "H5Fget_obj_ids: obj_id_list not pinned");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, obj_id_list)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list length < 0");
+ }
+
+ if (NULL == (id_list = (hid_t *) HDmalloc((size_t)rank * sizeof(hid_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed");
+
+ if ((ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t)rank; i++) {
+ obj_id_listP[i] = (jlong)id_list[i];
+ } /* end for */
+
+done:
+ if (id_list)
+ HDfree(id_list);
+ if (obj_id_listP)
+ UNPIN_LONG_ARRAY(ENVONLY, obj_id_list, obj_id_listP, (ret_val < 0) ? JNI_ABORT : 0);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids */
@@ -418,11 +430,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1obj_1count
(JNIEnv *env, jclass cls, jlong file_id, jint types)
{
- ssize_t ret_val = H5Fget_obj_count((hid_t)file_id, (unsigned int)types);
+ ssize_t ret_val = -1;
+
+ UNUSED(cls);
- if (ret_val < 0)
- h5libraryError(env);
+ if ((ret_val = H5Fget_obj_count((hid_t)file_id, (unsigned int)types)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1obj_1count_1long */
@@ -437,9 +452,12 @@ Java_hdf_hdf5lib_H5_H5Fget_1filesize
{
hsize_t size = 0;
- if (H5Fget_filesize ((hid_t)file_id, &size) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5Fget_filesize((hid_t)file_id, &size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong) size;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1filesize */
@@ -454,9 +472,12 @@ Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate
{
double rate = 0.0;
+ UNUSED(cls);
+
if (H5Fget_mdc_hit_rate((hid_t)file_id, &rate) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jdouble)rate;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate */
@@ -469,33 +490,37 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size
(JNIEnv *env, jclass cls, jlong file_id, jlongArray metadata_cache)
{
- jint size = 0;
- jlong *metadata_cache_ptr;
- size_t max_size = 0, min_clean_size = 0, cur_size = 0;
- int cur_num_entries = -1;
- jboolean isCopy;
-
- if (metadata_cache == NULL) {
- h5nullArgument(env, "H5Fget_mdc_size: metadata_cache is NULL");
- } /* end if */
- else {
- size = (int)ENVPTR->GetArrayLength(ENVPAR metadata_cache);
- if (size < 3) {
- h5badArgument(env, "H5Fget_mdc_size: length of metadata_cache < 3.");
- } /* end if */
- else {
- if (H5Fget_mdc_size((hid_t)file_id, &max_size, &min_clean_size, &cur_size, &cur_num_entries) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- metadata_cache_ptr = ENVPTR->GetLongArrayElements(ENVPAR metadata_cache, &isCopy);
- metadata_cache_ptr[0] = (jlong)max_size;
- metadata_cache_ptr[1] = (jlong)min_clean_size;
- metadata_cache_ptr[2] = (jlong)cur_size;
- ENVPTR->ReleaseLongArrayElements(ENVPAR metadata_cache, metadata_cache_ptr, 0);
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ size_t max_size = 0, min_clean_size = 0, cur_size = 0;
+ jlong *metadata_cache_ptr = NULL;
+ jsize size = 0;
+ int cur_num_entries = -1;
+
+ UNUSED(cls);
+
+ if (NULL == metadata_cache)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: metadata cache array is NULL");
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, metadata_cache)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: metadata_cache length < 0");
+ }
+
+ if (size < 3)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: length of metadata_cache array < 3");
+
+ if (H5Fget_mdc_size((hid_t)file_id, &max_size, &min_clean_size, &cur_size, &cur_num_entries) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ PIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, &isCopy, "H5Fget_mdc_size: metadata_cache array not pinned");
+
+ metadata_cache_ptr[0] = (jlong)max_size;
+ metadata_cache_ptr[1] = (jlong)min_clean_size;
+ metadata_cache_ptr[2] = (jlong)cur_size;
+
+done:
+ if (metadata_cache_ptr)
+ UNPIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, 0);
return (jint)cur_num_entries;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size */
@@ -509,31 +534,36 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1info
(JNIEnv *env, jclass clss, jlong obj_id)
{
- H5F_info2_t finfo;
- jvalue args[9];
+ H5F_info2_t finfo;
jobject ihinfobuf;
+ jvalue args[9];
jobject ret_obj = NULL;
- if (H5Fget_info2((hid_t)obj_id, &finfo) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].j = (jlong)finfo.sohm.msgs_info.index_size;
- args[1].j = (jlong)finfo.sohm.msgs_info.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf = ret_obj;
-
- args[0].i = (jint)finfo.super.version;
- args[1].j = (jlong)finfo.super.super_size;
- args[2].j = (jlong)finfo.super.super_ext_size;
- args[3].i = (jint)finfo.free.version;
- args[4].j = (jlong)finfo.free.meta_size;
- args[5].j = (jlong)finfo.free.tot_space;
- args[6].j = (jint)finfo.sohm.version;
- args[7].j = (jlong)finfo.sohm.hdr_size;
- args[8].l = ihinfobuf;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5F_info2_t", "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
- } /* end else */
+ UNUSED(clss);
+
+ if (H5Fget_info2((hid_t)obj_id, &finfo) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].j = (jlong)finfo.sohm.msgs_info.index_size;
+ args[1].j = (jlong)finfo.sohm.msgs_info.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+
+ ihinfobuf = ret_obj;
+
+ args[0].i = (jint)finfo.super.version;
+ args[1].j = (jlong)finfo.super.super_size;
+ args[2].j = (jlong)finfo.super.super_ext_size;
+ args[3].i = (jint)finfo.free.version;
+ args[4].j = (jlong)finfo.free.meta_size;
+ args[5].j = (jlong)finfo.free.tot_space;
+ args[6].j = (jint)finfo.sohm.version;
+ args[7].j = (jlong)finfo.sohm.hdr_size;
+ args[8].l = ihinfobuf;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5F_info2_t", "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
+
+done:
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1info */
@@ -546,8 +576,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats
(JNIEnv *env, jclass cls, jlong file_id)
{
+ UNUSED(cls);
+
if (H5Freset_mdc_hit_rate_stats((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats */
/*
@@ -559,8 +594,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache
(JNIEnv *env, jclass cls, jlong file_id)
{
+ UNUSED(cls);
+
if (H5Fclear_elink_file_cache((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache */
/*
@@ -572,8 +612,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write
(JNIEnv *env, jclass cls, jlong file_id)
{
+ UNUSED(cls);
+
if (H5Fstart_swmr_write((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write */
/*
@@ -585,8 +630,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging
(JNIEnv *env, jclass cls, jlong file_id)
{
+ UNUSED(cls);
+
if (H5Fstart_mdc_logging((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging */
/*
@@ -598,8 +648,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging
(JNIEnv *env, jclass cls, jlong file_id)
{
+ UNUSED(cls);
+
if (H5Fstop_mdc_logging((hid_t)file_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging */
/*
@@ -611,32 +666,38 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status
(JNIEnv *env, jclass cls, jlong file_id, jbooleanArray mdc_logging_status)
{
+ jboolean *mdc_logging_status_ptr = NULL;
+ jboolean isCopy;
hbool_t is_enabled;
hbool_t is_currently_logging;
- jboolean *mdc_logging_status_ptr;
- jint size;
- jboolean isCopy;
+ jsize size;
+
+ UNUSED(cls);
+
+ if (NULL == mdc_logging_status)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: mdc_logging_status is NULL");
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, mdc_logging_status)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: mdc_logging_status length < 0");
+ }
+
+ if (size < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: length of mdc_logging_status < 2");
- if (mdc_logging_status == NULL) {
- h5nullArgument(env, "H5Fget_mdc_logging_status: mdc_logging_status is NULL");
- } /* end if */
- else {
- size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_logging_status);
- if (size < 2) {
- h5badArgument(env, "H5Fget_mdc_logging_status: length of mdc_logging_status < 2.");
- } /* end if */
- else {
- if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- mdc_logging_status_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_logging_status, &isCopy);
- mdc_logging_status_ptr[0] = (jboolean)is_enabled;
- mdc_logging_status_ptr[1] = (jboolean)is_currently_logging;
- ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_logging_status, mdc_logging_status_ptr, 0);
- } /* end else */
- } /* end else */
- } /* end else */
+ if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ PIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, &isCopy, "H5Fget_mdc_logging_status: mdc_logging_status array not pinned");
+
+ mdc_logging_status_ptr[0] = (jboolean)is_enabled;
+ mdc_logging_status_ptr[1] = (jboolean)is_currently_logging;
+
+done:
+ if (mdc_logging_status_ptr)
+ UNPIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, 0);
+
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status */
/*
@@ -648,17 +709,18 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint
(JNIEnv *env, jclass clss, jlong file_id, jboolean minimize)
{
- herr_t retVal = -1;
- hbool_t minimize_val;
+ hbool_t minimize_val;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ minimize_val = (minimize == JNI_TRUE) ? TRUE : FALSE;
- if (minimize == JNI_TRUE)
- minimize_val = TRUE;
- else
- minimize_val = FALSE;
+ if ((retVal = H5Fset_dset_no_attrs_hint((hid_t)file_id, (hbool_t)minimize_val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Fset_dset_no_attrs_hint((hid_t)file_id, (hbool_t)minimize_val);
- if (retVal < 0)
- h5libraryError(env);
+done:
+ return;
}
/*
@@ -670,17 +732,18 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint
(JNIEnv *env, jclass clss, jlong file_id)
{
- hbool_t minimize = FALSE;
- jboolean bval = JNI_FALSE;
+ jboolean bval = JNI_FALSE;
+ hbool_t minimize = FALSE;
- if (H5Fget_dset_no_attrs_hint((hid_t)file_id, (hbool_t *)&minimize) < 0) {
- h5libraryError(env);
- }
- else {
- if (minimize == TRUE)
- bval = JNI_TRUE;
- } /* end else */
+ UNUSED(clss);
+
+ if (H5Fget_dset_no_attrs_hint((hid_t)file_id, (hbool_t *)&minimize) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (minimize == TRUE)
+ bval = JNI_TRUE;
+done:
return bval;
}
@@ -693,11 +756,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds
(JNIEnv *env, jclass clss, jlong file_id, jint low, jint high)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Fset_libver_bounds((hid_t)file_id, (H5F_libver_t)low, (H5F_libver_t)high)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Fset_libver_bounds((hid_t)file_id, (H5F_libver_t)low, (H5F_libver_t)high);
- if(retVal < 0)
- h5libraryError(env);
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds */
diff --git a/java/src/jni/h5fImp.h b/java/src/jni/h5fImp.h
index fe253f9..410a249 100644
--- a/java/src/jni/h5fImp.h
+++ b/java/src/jni/h5fImp.h
@@ -72,7 +72,7 @@ Java_hdf_hdf5lib_H5_H5Fis_1hdf5
* Signature: (Ljava/lang/String;J)Z
*/
JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Fis_1ccessible
+Java_hdf_hdf5lib_H5_H5Fis_1accessible
(JNIEnv*, jclass, jstring, jlong);
/*
diff --git a/java/src/jni/h5gImp.c b/java/src/jni/h5gImp.c
index 42c042a..8adabca 100644
--- a/java/src/jni/h5gImp.c
+++ b/java/src/jni/h5gImp.c
@@ -29,7 +29,10 @@ extern "C" {
#include "h5util.h"
#include "h5gImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -40,12 +43,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Gclose
(JNIEnv *env, jclass clss, jlong group_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Gclose((hid_t)group_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Gclose((hid_t)group_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Gclose */
@@ -63,33 +68,46 @@ jobject
create_H5G_info_t
(JNIEnv *env, H5G_info_t group_info)
{
- jclass cls;
+ jfieldID fid_storage_type, fid_nlinks, fid_max_corder, fid_mounted;
jboolean jmounted;
+ jclass cls;
jint storage_type;
jobject obj = NULL;
- jfieldID fid_storage_type, fid_nlinks, fid_max_corder, fid_mounted;
- cls = ENVPTR->FindClass(ENVPAR "hdf/hdf5lib/structs/H5G_info_t");
- if (cls != NULL) {
- obj = ENVPTR->AllocObject(ENVPAR cls);
- if (obj != NULL) {
- if ((fid_storage_type = ENVPTR->GetFieldID(ENVPAR cls, "storage_type", "I")) != NULL) {
- if ((fid_nlinks = ENVPTR->GetFieldID(ENVPAR cls, "nlinks", "J")) != NULL) {
- if ((fid_max_corder = ENVPTR->GetFieldID(ENVPAR cls, "max_corder", "J")) != NULL) {
- if ((fid_mounted = ENVPTR->GetFieldID(ENVPAR cls, "mounted", "Z")) != NULL) {
- jmounted = (group_info.mounted==0) ? JNI_FALSE : JNI_TRUE;
- storage_type = (jint)group_info.storage_type;
-
- ENVPTR->SetIntField(ENVPAR obj, fid_storage_type, (jint)storage_type);
- ENVPTR->SetLongField(ENVPAR obj, fid_nlinks, (jlong)group_info.nlinks);
- ENVPTR->SetLongField(ENVPAR obj, fid_max_corder, (jlong)group_info.max_corder);
- ENVPTR->SetBooleanField(ENVPAR obj, fid_mounted, jmounted);
- }
- }
- }
- }
- }
- }
+ if (NULL == (cls = ENVPTR->FindClass(ENVONLY, "hdf/hdf5lib/structs/H5G_info_t")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (obj = ENVPTR->AllocObject(ENVONLY, cls)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid_storage_type = ENVPTR->GetFieldID(ENVONLY, cls, "storage_type", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid_nlinks = ENVPTR->GetFieldID(ENVONLY, cls, "nlinks", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid_max_corder = ENVPTR->GetFieldID(ENVONLY, cls, "max_corder", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid_mounted = ENVPTR->GetFieldID(ENVONLY, cls, "mounted", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ jmounted = (group_info.mounted == 0) ? JNI_FALSE : JNI_TRUE;
+ storage_type = (jint)group_info.storage_type;
+
+ ENVPTR->SetIntField(ENVONLY, obj, fid_storage_type, (jint)storage_type);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetLongField(ENVONLY, obj, fid_nlinks, (jlong)group_info.nlinks);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetLongField(ENVONLY, obj, fid_max_corder, (jlong)group_info.max_corder);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetBooleanField(ENVONLY, obj, fid_mounted, jmounted);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
return obj;
} /* end create_H5G_info_t */
@@ -103,17 +121,19 @@ Java_hdf_hdf5lib_H5__1H5Gcreate2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
{
- hid_t group_id = -1;
- const char *gName;
+ const char *grpName = NULL;
+ hid_t group_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, gName);
- if (gName != NULL) {
- group_id = H5Gcreate2((hid_t)loc_id, gName, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, gName);
- if (group_id < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gcreate2: group name not pinned");
+
+ if ((group_id = H5Gcreate2((hid_t)loc_id, grpName, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gcreate2 */
@@ -127,12 +147,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gcreate_1anon
(JNIEnv *env, jclass cls, jlong loc_id, jlong gcpl_id, jlong gapl_id)
{
- hid_t group_id = -1;
+ hid_t group_id = H5I_INVALID_HID;
- group_id = H5Gcreate_anon((hid_t)loc_id, (hid_t)gcpl_id, (hid_t)gapl_id);
- if (group_id < 0)
- h5libraryError(env);
+ UNUSED(cls);
+ if ((group_id = H5Gcreate_anon((hid_t)loc_id, (hid_t)gcpl_id, (hid_t)gapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gcreate_1anon */
@@ -145,18 +167,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gopen2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id)
{
- hid_t group_id = -1;
- const char *gName;
+ const char *grpName = NULL;
+ hid_t group_id = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, gName);
- if (gName != NULL) {
- group_id = H5Gopen2((hid_t)loc_id, gName, (hid_t)access_plist_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, gName);
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gopen2: group name not pinned");
- if (group_id < 0)
- h5libraryError(env);
- }
+ if ((group_id = H5Gopen2((hid_t)loc_id, grpName, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gopen2 */
@@ -171,11 +194,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1create_1plist
(JNIEnv *env, jclass cls, jlong loc_id)
{
- hid_t plist_id = H5Gget_create_plist((hid_t)loc_id);
+ hid_t plist_id = H5I_INVALID_HID;
- if (plist_id < 0)
- h5libraryError(env);
+ UNUSED(cls);
+ if ((plist_id = H5Gget_create_plist((hid_t)loc_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)plist_id;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1create_1plist */
@@ -188,14 +214,18 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info
(JNIEnv *env, jclass cls, jlong loc_id)
{
- jobject obj = NULL;
H5G_info_t group_info;
+ jobject obj = NULL;
+
+ UNUSED(cls);
if (H5Gget_info((hid_t)loc_id, &group_info) < 0)
- h5libraryError(env);
- else
- obj = create_H5G_info_t(env, group_info);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (obj = create_H5G_info_t(env, group_info)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info: unable to create H5G_info_t object");
+done:
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info */
@@ -208,23 +238,27 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name
(JNIEnv *env, jclass cls, jlong loc_id, jstring name, jlong lapl_id)
{
- jobject obj = NULL;
- herr_t ret_val = -1;
- const char *gName;
H5G_info_t group_info;
+ const char *grpName = NULL;
+ jobject obj = NULL;
+ herr_t ret_val = FAIL;
+
+ UNUSED(cls);
- PIN_JAVA_STRING(name, gName);
- if (gName != NULL) {
- ret_val = H5Gget_info_by_name((hid_t)loc_id, gName, &group_info, (hid_t)lapl_id);
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_name: group name not pinned");
- UNPIN_JAVA_STRING(name, gName);
+ if ((ret_val = H5Gget_info_by_name((hid_t)loc_id, grpName, &group_info, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (ret_val < 0)
- h5libraryError(env);
- else
- obj = create_H5G_info_t(env, group_info);
+ if (NULL == (obj = create_H5G_info_t(env, group_info))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info_by_name: unable to create H5G_info_t object");
}
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
+
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name */
@@ -238,26 +272,30 @@ Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx
(JNIEnv *env, jclass cls, jlong loc_id, jstring name, jint index_type,
jint order, jlong n, jlong lapl_id)
{
- jobject obj = NULL;
- herr_t ret_val = -1;
- const char *gName;
- H5G_info_t group_info;
- H5_index_t cindex_type = (H5_index_t)index_type;
- H5_iter_order_t corder = (H5_iter_order_t)order;
-
- PIN_JAVA_STRING(name, gName);
- if (gName != NULL) {
- ret_val = H5Gget_info_by_idx((hid_t)loc_id, gName, cindex_type,
- corder, (hsize_t)n, &group_info, (hid_t)lapl_id);
-
- UNPIN_JAVA_STRING(name, gName);
-
- if (ret_val < 0)
- h5libraryError(env);
- else
- obj = create_H5G_info_t(env, group_info);
+ H5_iter_order_t corder = (H5_iter_order_t)order;
+ H5_index_t cindex_type = (H5_index_t)index_type;
+ H5G_info_t group_info;
+ const char *grpName = NULL;
+ jobject obj = NULL;
+ herr_t ret_val = FAIL;
+
+ UNUSED(cls);
+
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_idx: group name not pinned");
+
+ if ((ret_val = H5Gget_info_by_idx((hid_t)loc_id, grpName, cindex_type,
+ corder, (hsize_t)n, &group_info, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (obj = create_H5G_info_t(env, group_info))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info_by_idx: unable to create H5G_info_t object");
}
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
+
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx */
@@ -270,8 +308,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Gflush
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Gflush((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Gflush */
/*
@@ -283,8 +326,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Grefresh
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Grefresh((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Grefresh */
diff --git a/java/src/jni/h5iImp.c b/java/src/jni/h5iImp.c
index b8bd1cd..a367802 100644
--- a/java/src/jni/h5iImp.c
+++ b/java/src/jni/h5iImp.c
@@ -27,7 +27,10 @@ extern "C" {
#include "h5jni.h"
#include "h5iImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -40,10 +43,12 @@ Java_hdf_hdf5lib_H5_H5Iget_1type
{
H5I_type_t retVal = H5I_BADID;
- retVal = H5Iget_type((hid_t)obj_id);
- if (retVal == H5I_BADID)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5I_BADID == (retVal = H5Iget_type((hid_t)obj_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1type */
@@ -56,32 +61,32 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1name_1long
(JNIEnv *env, jclass clss, jlong obj_id, jobjectArray name, jlong buf_size)
{
- char *aName;
- jstring str;
- hssize_t size = -1;
- long bs;
-
- bs = (long)buf_size;
- if (bs <= 0) {
- h5badArgument(env, "H5Iget_name: buf_size <= 0");
- } /* end if */
- else {
- aName = (char*)HDmalloc(sizeof(char) * (size_t)bs);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Iget_name: malloc failed");
- } /* end if */
- else {
- size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size);
- if (size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, str);
- }
- HDfree(aName);
- }
- }
+ ssize_t size = -1;
+ jstring str;
+ char *aName = NULL;
+
+ UNUSED(clss);
+
+ if (buf_size < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Iget_name_long: buf_size < 0");
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name_long: malloc failed");
+
+ if ((size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ aName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (aName)
+ HDfree(aName);
+
return (jlong)size;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1name */
@@ -95,33 +100,30 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1name
(JNIEnv *env, jclass clss, jlong obj_id)
{
- char *aName;
jstring str = NULL;
- ssize_t buf_size;
-
- /* get the length of the name */
- buf_size = H5Iget_name((hid_t)obj_id, NULL, 0);
-
- if (buf_size <= 0) {
- h5badArgument(env, "H5Iget_name: buf_size <= 0");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Iget_name: malloc failed");
- } /* end if */
- else {
- buf_size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size);
- if (buf_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- }
- HDfree(aName);
- }
- }
+ ssize_t buf_size = -1;
+ char *aName = NULL;
+
+ UNUSED(clss);
+
+ /* Get the length of the name */
+ if ((buf_size = H5Iget_name((hid_t)obj_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name: malloc failed");
+
+ if (H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ aName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (aName)
+ HDfree(aName);
+
return str;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1name */
@@ -134,12 +136,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
- int retVal = -1;
+ int retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Iget_ref((hid_t)obj_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Iget_ref((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1ref */
@@ -152,12 +156,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iinc_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
- int retVal = -1;
+ int retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Iinc_ref((hid_t)obj_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Iinc_ref((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iinc_1ref */
@@ -170,12 +176,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Idec_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
- int retVal = -1;
+ int retVal = FAIL;
- retVal = H5Idec_ref((hid_t)obj_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Idec_ref((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Idec_1ref */
@@ -189,12 +197,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1file_1id
(JNIEnv *env, jclass clss, jlong obj_id)
{
- hid_t file_id = -1;
+ hid_t file_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
- file_id = H5Iget_file_id((hid_t)obj_id);
- if (file_id < 0)
- h5libraryError(env);
+ if ((file_id = H5Iget_file_id((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong) file_id;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1file_1id */
@@ -207,12 +217,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
- int retVal = -1;
+ int retVal = FAIL;
- retVal = H5Iget_type_ref((H5I_type_t)type);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Iget_type_ref((H5I_type_t)type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1type_1ref */
@@ -225,12 +237,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Idec_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
- int retVal = -1;
+ int retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Idec_type_ref((H5I_type_t)type);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Idec_type_ref((H5I_type_t)type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Idec_1type_1ref */
@@ -243,12 +257,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
- int retVal = -1;
+ int retVal = FAIL;
- retVal = H5Iinc_type_ref((H5I_type_t)type);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Iinc_type_ref((H5I_type_t)type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref */
@@ -261,11 +277,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Inmembers
(JNIEnv *env, jclass clss, jint type)
{
- hsize_t num_members;
+ hsize_t num_members = 0;
+
+ UNUSED(clss);
if (H5Inmembers((H5I_type_t)type, &num_members) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)num_members;
} /* end Java_hdf_hdf5lib_H5_H5Inmembers */
@@ -280,12 +299,14 @@ Java_hdf_hdf5lib_H5_H5Iis_1valid
{
htri_t bval = JNI_FALSE;
- bval = H5Iis_valid((hid_t)obj_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((bval = H5Iis_valid((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Iis_1valid */
/*
@@ -299,12 +320,14 @@ Java_hdf_hdf5lib_H5_H5Itype_1exists
{
htri_t bval = JNI_FALSE;
- bval = H5Itype_exists((H5I_type_t)type);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Itype_exists((H5I_type_t)type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+done:
return (jboolean)bval;
} /* end else Java_hdf_hdf5lib_H5_H5Itype_1exists */
@@ -317,8 +340,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Iclear_1type
(JNIEnv *env, jclass clss, jint type, jboolean force)
{
- if (H5Iclear_type((H5I_type_t)type, (hbool_t)force) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5Iclear_type((H5I_type_t)type, (hbool_t)force) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Iclear_1type */
/*
@@ -330,8 +358,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Idestroy_1type
(JNIEnv *env, jclass clss, jint type)
{
- if (H5Idestroy_type((H5I_type_t)type) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5Idestroy_type((H5I_type_t)type) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Idestroy_1type */
#ifdef __cplusplus
diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h
index 2970e14..4a94180 100644
--- a/java/src/jni/h5jni.h
+++ b/java/src/jni/h5jni.h
@@ -27,147 +27,299 @@
#ifdef __cplusplus
#define ENVPTR (env)
- #define ENVPAR
#define ENVONLY
#define CBENVPTR (cbenv)
- #define CBENVPAR
+ #define CBENVONLY
#define JVMPTR (jvm)
#define JVMPAR
- #define JVMPAR2
#else /* __cplusplus */
#define ENVPTR (*env)
- #define ENVPAR env,
#define ENVONLY env
#define CBENVPTR (*cbenv)
- #define CBENVPAR cbenv,
+ #define CBENVONLY cbenv
#define JVMPTR (*jvm)
#define JVMPAR jvm
- #define JVMPAR2 jvm,
#endif /* __cplusplus */
+/*
+ * Used to silence compiler when a particular
+ * function parameter is not used.
+ */
+#define UNUSED(o) (void) o
+
/* Macros for class access */
/* Calling code must define ret_obj as jobject */
-#define CALL_CONSTRUCTOR(classname,classsig,args) { \
- jclass cls; \
- jmethodID constructor; \
- cls = ENVPTR->FindClass(ENVPAR (classname)); \
- if (cls == 0) { \
- h5JNIFatalError(env, "JNI error: GetObjectClass\n"); \
- ret_obj = NULL; \
- } \
- constructor = ENVPTR->GetMethodID(ENVPAR cls, "<init>", (classsig)); \
- if (constructor == 0) { \
- h5JNIFatalError(env, "JNI error: GetMethodID failed\n"); \
- ret_obj = NULL; \
- } \
- ret_obj = ENVPTR->NewObjectA(ENVPAR cls, constructor, (args)); \
+#define CALL_CONSTRUCTOR(env, classname, classsig, args, ret_obj) \
+{ \
+ jmethodID constructor; \
+ jclass cls; \
+ \
+ if (NULL == (cls = ENVPTR->FindClass(env, (classname)))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, "JNI error: GetObjectClass"); \
+ } \
+ if (NULL == (constructor = ENVPTR->GetMethodID(ENVONLY, cls, "<init>", (classsig)))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, "JNI error: GetMethodID failed"); \
+ } \
+ if (NULL == (ret_obj = ENVPTR->NewObjectA(ENVONLY, cls, constructor, (args)))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_FALSE); \
+ } \
+}
+
+/*
+ * Macros for pinning/unpinning objects.
+ */
+#define PIN_BYTE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetByteArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_BYTE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jbyte *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_BYTE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseByteArrayElements(env, pinnedArray, (jbyte *) bufToRelease, freeMode); \
+}
+
+#define PIN_SHORT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetShortArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_SHORT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jshort *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_SHORT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseShortArrayElements(env, pinnedArray, (jshort *) bufToRelease, freeMode); \
+}
+
+#define PIN_INT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetIntArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_INT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jint *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_INT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseIntArrayElements(env, pinnedArray, (jint *) bufToRelease, freeMode); \
+}
+
+#define PIN_LONG_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetLongArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_LONG_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jlong *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_LONG_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseLongArrayElements(env, pinnedArray, (jlong *) bufToRelease, freeMode); \
+}
+
+#define PIN_FLOAT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetFloatArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_FLOAT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jfloat *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_FLOAT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseFloatArrayElements(env, pinnedArray, (jfloat *) bufToRelease, freeMode); \
+}
+
+#define PIN_DOUBLE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetDoubleArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_DOUBLE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jdouble *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_DOUBLE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseDoubleArrayElements(env, pinnedArray, (jdouble *) bufToRelease, freeMode); \
+}
+
+#define PIN_BOOL_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = ENVPTR->GetBooleanArrayElements(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define PIN_BOOL_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outBuf = (jboolean *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
}
+#define UNPIN_BOOL_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleaseBooleanArrayElements(env, pinnedArray, (jboolean *) bufToRelease, freeMode); \
+}
+
+#define UNPIN_ARRAY_CRITICAL(env, pinnedArray, bufToRelease, freeMode) \
+{ \
+ ENVPTR->ReleasePrimitiveArrayCritical(env, pinnedArray, bufToRelease, freeMode); \
+}
/* Macros for string access */
-#define PIN_JAVA_STRING(javastr,localstr) { \
- jboolean isCopy; \
- (localstr) = NULL; \
- if ((javastr) == NULL) { \
- h5nullArgument(env, "java string is NULL"); \
- } \
- else { \
- (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
- if ((localstr) == NULL) { \
- h5JNIFatalError(env, "local c string is not pinned"); \
- } \
- } \
-}
-
-#define UNPIN_JAVA_STRING(javastr,localstr) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
-}
-
-#define PIN_JAVA_STRING_TWO(javastr,localstr,java2str,local2str) { \
- jboolean isCopy; \
- (localstr) = NULL; \
- (local2str) = NULL; \
- if ((javastr) == NULL) { \
- h5nullArgument(env, "java string is NULL"); \
- } \
- else if ((java2str) == NULL) { \
- h5nullArgument(env, "second java string is NULL"); \
- } \
- else { \
- (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
- if ((localstr) == NULL) { \
- h5JNIFatalError(env, "local c string is not pinned"); \
- } \
- else { \
- (local2str) = ENVPTR->GetStringUTFChars(ENVPAR (java2str), &isCopy); \
- if ((local2str) == NULL) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- h5JNIFatalError(env, "second local c string is not pinned"); \
- } \
- } \
- } \
-}
-
-#define UNPIN_JAVA_STRING_TWO(javastr,localstr,java2str,local2str) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
-}
-
-#define PIN_JAVA_STRING_THREE(javastr,localstr,java2str,local2str,java3str,local3str) { \
- jboolean isCopy; \
- (localstr) = NULL; \
- (local2str) = NULL; \
- (local3str) = NULL; \
- if ((javastr) == NULL) { \
- h5nullArgument(env, "java string is NULL"); \
- } \
- else if ((java2str) == NULL) { \
- h5nullArgument(env, "second java string is NULL"); \
- } \
- else if ((java3str) == NULL) { \
- h5nullArgument(env, "third java string is NULL"); \
- } \
- else { \
- (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
- if ((localstr) == NULL) { \
- h5JNIFatalError(env, "local c string is not pinned"); \
- } \
- else { \
- (local2str) = ENVPTR->GetStringUTFChars(ENVPAR (java2str), &isCopy); \
- if ((local2str) == NULL) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- h5JNIFatalError(env, "second local c string is not pinned"); \
- } \
- else { \
- (local3str) = ENVPTR->GetStringUTFChars(ENVPAR (java3str), &isCopy); \
- if ((local3str) == NULL) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
- h5JNIFatalError(env, "third local c string is not pinned"); \
- } \
- } \
- } \
- } \
-}
-
-#define UNPIN_JAVA_STRING_THREE(javastr,localstr,java2str,local2str,java3str,local3str) { \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
- ENVPTR->ReleaseStringUTFChars(ENVPAR (java3str), (local3str)); \
+#define PIN_JAVA_STRING(env, stringToPin, outString, isCopy, failErrMsg) \
+{ \
+ if (NULL == (outString = ENVPTR->GetStringUTFChars(env, stringToPin, isCopy))) { \
+ CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
+ H5_JNI_FATAL_ERROR(env, failErrMsg); \
+ } \
+}
+
+#define UNPIN_JAVA_STRING(env, pinnedString, stringToRelease) \
+{ \
+ ENVPTR->ReleaseStringUTFChars(env, pinnedString, stringToRelease); \
+}
+
+/*
+ * Macro to check for a JNI exception after a JNI method is called.
+ * If an exception occurred, the value of 'clearException' will determine
+ * whether or not the exception will be cleared in order for the native
+ * method to do its own error handling.
+ *
+ * If the exception does not get cleared, this macro will skip to the
+ * cleanup+return section of the native method, since at that point
+ * cleaning up and returning is the only safe thing that can be done.
+ */
+#define CHECK_JNI_EXCEPTION(env, clearException) \
+{ \
+ if (JNI_TRUE == (*env)->ExceptionCheck(env)) { \
+ if (JNI_TRUE == clearException) \
+ (*env)->ExceptionClear(env); \
+ else \
+ goto done; \
+ } \
}
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
-extern jboolean h5JNIFatalError(JNIEnv *, const char *);
-extern jboolean h5nullArgument(JNIEnv *, const char *);
-extern jboolean h5badArgument (JNIEnv *, const char *);
-extern jboolean h5outOfMemory (JNIEnv *, const char *);
-extern jboolean h5libraryError(JNIEnv *env );
-extern jboolean h5raiseException(JNIEnv *, const char *, const char *);
+extern jboolean h5JNIFatalError(JNIEnv *env, const char *);
+extern jboolean h5nullArgument(JNIEnv *env, const char *);
+extern jboolean h5badArgument(JNIEnv *env, const char *);
+extern jboolean h5outOfMemory(JNIEnv *env, const char *);
+extern jboolean h5libraryError(JNIEnv *env);
+extern jboolean h5raiseException(JNIEnv *env, const char *, const char *);
extern jboolean h5unimplemented( JNIEnv *env, const char *functName);
+/*
+ * The following macros are to facilitate immediate cleanup+return
+ * from a native JNI method when an exception is to be thrown.
+ * Since, in general, the "cleanup" methods are the only safe JNI
+ * methods to call once an exception has occurred, we want to immediately
+ * cleanup and return instead of letting the native method continue.
+ *
+ * Note that a native method can clear the exception when one occurs and
+ * then do its own error handling, but we instead opt to immediately return.
+ */
+#define H5_JNI_FATAL_ERROR(env, message) \
+{ \
+ h5JNIFatalError(env, message); \
+ goto done; \
+}
+
+#define H5_NULL_ARGUMENT_ERROR(env, message) \
+{ \
+ h5nullArgument(env, message); \
+ goto done; \
+}
+
+#define H5_BAD_ARGUMENT_ERROR(env, message) \
+{ \
+ h5badArgument(env, message); \
+ goto done; \
+}
+
+#define H5_OUT_OF_MEMORY_ERROR(env, message) \
+{ \
+ h5outOfMemory(env, message); \
+ goto done; \
+}
+
+#define H5_LIBRARY_ERROR(env) \
+{ \
+ h5libraryError(env); \
+ goto done; \
+}
+
+#define H5_RAISE_EXCEPTION(env, message, exception) \
+{ \
+ h5raiseException(env, message, exception); \
+ goto done; \
+}
+
+#define H5_UNIMPLEMENTED(env, message) \
+{ \
+ h5unimplemented(env, message); \
+ goto done; \
+}
+
/* implemented at H5.c */
extern jint get_enum_value(JNIEnv *env, jobject enum_obj);
extern jobject get_enum_object(JNIEnv *env, const char* enum_class_name,
diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c
index e1ec3bd..5999270 100644
--- a/java/src/jni/h5lImp.c
+++ b/java/src/jni/h5lImp.c
@@ -27,6 +27,9 @@ extern "C" {
#include "h5jni.h"
#include "h5lImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -50,19 +53,23 @@ Java_hdf_hdf5lib_H5_H5Lcopy
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id,
jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Lcopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcopy: src name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcopy: dest name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Lcopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
} /* end Java_hdf_hdf5lib_H5_H5Lcopy */
/*
@@ -75,20 +82,27 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1external
(JNIEnv *env, jclass clss, jstring file_name, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lFileName;
- const char *lCurName;
- const char *lDstName;
-
- PIN_JAVA_STRING_THREE(file_name, lFileName, cur_name, lCurName, dst_name, lDstName);
- if (lFileName != NULL && lCurName != NULL && lDstName != NULL) {
- status = H5Lcreate_external(lFileName, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
-
- UNPIN_JAVA_STRING_THREE(file_name, lFileName, cur_name, lCurName, dst_name, lDstName);
-
- if (status < 0)
- h5libraryError(env);
- }
+ const char *lFileName = NULL;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, file_name, lFileName, NULL, "H5Lcreate_external: file name not pinned");
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcreate_external: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcreate_external: link name not pinned");
+
+ if ((status = H5Lcreate_external(lFileName, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
+ if (lFileName)
+ UNPIN_JAVA_STRING(ENVONLY, file_name, lFileName);
} /* end Java_hdf_hdf5lib_H5_H5Lcreate_1external */
/*
@@ -101,19 +115,23 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1hard
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Lcreate_hard((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcreate_hard: object name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcreate_hard: link name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Lcreate_hard((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
} /* end Java_hdf_hdf5lib_H5_H5Lcreate_1hard */
/*
@@ -126,19 +144,23 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1soft
(JNIEnv *env, jclass clss, jstring cur_name, jlong dst_loc_id,
jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *linkTarget = NULL;
+ const char *linkName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Lcreate_soft(lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ PIN_JAVA_STRING(ENVONLY, cur_name, linkTarget, NULL, "H5Lcreate_soft: link target not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, linkName, NULL, "H5Lcreate_soft: link name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Lcreate_soft(linkTarget, (hid_t)dst_loc_id, linkName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, linkName);
+ if (linkTarget)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, linkTarget);
} /* end Java_hdf_hdf5lib_H5_H5Lcreate_1soft */
/*
@@ -150,18 +172,19 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Ldelete
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- herr_t status = -1;
- const char *lName;
+ const char *linkName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Ldelete((hid_t)loc_id, lName, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, lName);
+ PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Ldelete: link name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Ldelete((hid_t)loc_id, linkName, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, name, linkName);
} /* end Java_hdf_hdf5lib_H5_H5Ldelete */
/*
@@ -174,19 +197,20 @@ Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong access_id)
{
+ const char *groupName = NULL;
hsize_t n = (hsize_t)link_n;
- herr_t status;
- const char *lName;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Ldelete_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, n, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, lName);
+ PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Ldelete_by_idx: group name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Ldelete_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, n, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (groupName)
+ UNPIN_JAVA_STRING(ENVONLY, name, groupName);
} /* end Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx */
/*
@@ -198,20 +222,21 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Lexists
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- htri_t bval = JNI_FALSE;
- const char *lName;
+ const char *linkName = NULL;
+ htri_t bval = JNI_FALSE;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- bval = H5Lexists((hid_t)loc_id, lName, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, lName);
+ PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lexists: link name not pinned");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ if ((bval = H5Lexists((hid_t)loc_id, linkName, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, name, linkName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Lexists */
@@ -225,33 +250,31 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Lget_1info
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- jobject ret_obj = NULL;
- jvalue args[5];
- herr_t status;
H5L_info_t infobuf;
- const char *lName;
-
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Lget_info((hid_t)loc_id, lName, &infobuf, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = infobuf.type;
- args[1].z = infobuf.corder_valid;
- args[2].j = infobuf.corder;
- args[3].i = infobuf.cset;
- if(infobuf.type==0)
- args[4].j = (jlong)infobuf.u.address;
- else
- args[4].j = (jlong)infobuf.u.val_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args);
- } /* end else */
- } /* end if */
+ const char *linkName = NULL;
+ jvalue args[5];
+ herr_t status = FAIL;
+ jobject ret_obj = NULL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_info: link name not pinned");
+
+ if ((status = H5Lget_info((hid_t)loc_id, linkName, &infobuf, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = infobuf.type;
+ args[1].z = infobuf.corder_valid;
+ args[2].j = infobuf.corder;
+ args[3].i = infobuf.cset;
+ args[4].j = (infobuf.type == H5L_TYPE_HARD) ? (jlong) infobuf.u.address : (jlong) infobuf.u.val_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj);
+
+done:
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, name, linkName);
+
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1info */
@@ -265,33 +288,31 @@ Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong access_id)
{
- jobject ret_obj = NULL;
- jvalue args[5];
- herr_t status;
H5L_info_t infobuf;
- const char *lName;
-
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Lget_info_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = infobuf.type;
- args[1].z = infobuf.corder_valid;
- args[2].j = infobuf.corder;
- args[3].i = infobuf.cset;
- if(infobuf.type==0)
- args[4].j = (jlong)infobuf.u.address;
- else
- args[4].j = (jlong)infobuf.u.val_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args);
- } /* end els */
- }
+ const char *groupName = NULL;
+ jvalue args[5];
+ herr_t status = FAIL;
+ jobject ret_obj = NULL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_info_by_idx: group name not pinned");
+
+ if ((status = H5Lget_info_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = infobuf.type;
+ args[1].z = infobuf.corder_valid;
+ args[2].j = infobuf.corder;
+ args[3].i = infobuf.cset;
+ args[4].j = (infobuf.type == H5L_TYPE_HARD) ? (jlong) infobuf.u.address : (jlong) infobuf.u.val_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj);
+
+done:
+ if (groupName)
+ UNPIN_JAVA_STRING(ENVONLY, name, groupName);
+
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx */
@@ -305,43 +326,35 @@ Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong access_id)
{
- jlong status_size;
+ const char *groupName = NULL;
jstring str = NULL;
- size_t buf_size;
- const char *lName;
- char *lValue;
-
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- /* get the length of the link name */
- status_size = H5Lget_name_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char*)NULL, (size_t)0, H5P_DEFAULT);
- if(status_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = (size_t)status_size + 1;/* add extra space for the null terminator */
-
- lValue = (char*)HDmalloc(sizeof(char) * buf_size);
- if (lValue == NULL) {
- h5outOfMemory(env, "H5Lget_name_by_idx: malloc failed ");
- } /* end if */
- else {
- status_size = H5Lget_name_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char*)lValue, (size_t)buf_size, (hid_t)access_id);
-
- if (status_size < 0) {
- HDfree(lValue);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR lValue);
- HDfree(lValue);
- if (str == NULL)
- h5JNIFatalError(env, "H5Lget_name_by_idx: return string not created");
- } /* end else */
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, lName);
- }
+ ssize_t status_size = -1;
+ char *linkName = NULL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_name_by_idx: group name not pinned");
+
+ /* Get the length of the link name */
+ if ((status_size = H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)NULL, (size_t)0, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* add extra space for the null terminator */
+ if (NULL == (linkName = (char *) HDmalloc(sizeof(char) * (size_t)status_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_name_by_idx: failed to allocate buffer for link name");
+
+ if ((H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)linkName, (size_t)status_size + 1, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ linkName[status_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, linkName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (linkName)
+ HDfree(linkName);
+ if (groupName)
+ UNPIN_JAVA_STRING(ENVONLY, name, groupName);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx */
@@ -355,80 +368,80 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Lget_1value
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jobjectArray link_value, jlong access_id)
{
- size_t buf_size;
- herr_t status;
H5L_info_t infobuf;
- const char *lName;
- char *lValue;
- const char *file_name;
- const char *obj_name;
+ const char *file_name = NULL;
+ const char *obj_name = NULL;
+ const char *linkName = NULL;
jstring str;
+ herr_t status;
+ char *linkValue = NULL;
+
+ UNUSED(clss);
+
+ infobuf.type = H5L_TYPE_ERROR;
+
+ PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_value: link name not pinned");
+
+ /* Get the length of the link value */
+ if ((status = H5Lget_info((hid_t)loc_id, linkName, &infobuf, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5L_TYPE_HARD == infobuf.type)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: hard links are unsupported");
+
+ if (NULL == (linkValue = (char *) HDmalloc(sizeof(char) * infobuf.u.val_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: failed to allocate buffer for link value");
+
+ if ((status = H5Lget_val((hid_t)loc_id, linkName, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ linkValue[infobuf.u.val_size] = '\0';
+
+ switch (infobuf.type) {
+ case H5L_TYPE_SOFT:
+ {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, linkValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- infobuf.type = -1;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- /* get the length of the link val */
- status = H5Lget_info((hid_t)loc_id, lName, &infobuf, H5P_DEFAULT);
- if(status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = infobuf.u.val_size + 1;/* add extra space for the null terminator */
-
- if(infobuf.type == H5L_TYPE_HARD) {
- h5JNIFatalError(env, "H5Lget_val: link is hard type");
- } /* end if */
- else {
- lValue = (char*)HDmalloc(sizeof(char) * buf_size);
- if (lValue == NULL) {
- h5outOfMemory(env, "H5Lget_val: malloc failed");
- } /* end if */
- else {
- status = H5Lget_val((hid_t)loc_id, lName, (void*)lValue, buf_size, (hid_t)access_id);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else if(infobuf.type == H5L_TYPE_EXTERNAL) {
- status = H5Lunpack_elink_val(lValue, (size_t)infobuf.u.val_size, (unsigned*)NULL, &file_name, &obj_name);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR obj_name);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
-
- str = ENVPTR->NewStringUTF(ENVPAR file_name);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 1, str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR lValue);
- if (str == NULL) {
- /* exception -- fatal JNI error */
- h5JNIFatalError(env, "H5Lget_val: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
- } /* end else */
- } /* end else */
- HDfree(lValue);
- } /* end else */
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, lName);
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ case H5L_TYPE_EXTERNAL:
+ {
+ if ((status = H5Lunpack_elink_val(linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, &file_name, &obj_name)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, obj_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 1, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ case H5L_TYPE_ERROR:
+ case H5L_TYPE_MAX:
+ case H5L_TYPE_HARD:
+ default:
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: invalid link type");
+ break;
}
+done:
+ if (linkValue)
+ HDfree(linkValue);
+ if (linkName)
+ UNPIN_JAVA_STRING(ENVONLY, name, linkName);
+
return infobuf.type;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1val */
@@ -442,78 +455,83 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order,
jlong link_n, jobjectArray link_value, jlong access_id)
{
- herr_t status;
- size_t buf_size;
H5L_info_t infobuf;
- const char *lName;
- void *lValue;
- const char *file_name;
- const char *obj_name;
+ const char *file_name = NULL;
+ const char *obj_name = NULL;
+ const char *grpName = NULL;
jstring str;
+ herr_t status;
+ void *linkValue = NULL;
+
+ UNUSED(clss);
+
+ infobuf.type = H5L_TYPE_ERROR;
+
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lget_val_by_idx: group name not pinned");
+
+ /* Get the length of the link value */
+ if ((status = H5Lget_info_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5L_TYPE_HARD == infobuf.type)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: hard links are unsupported")
+
+ if (!infobuf.u.val_size)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (linkValue = (void *) HDmalloc(infobuf.u.val_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: failed to allocate buffer for link value");
+
+ if ((status = H5Lget_val_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ ((char *) linkValue)[infobuf.u.val_size] = '\0';
+
+ switch (infobuf.type) {
+ case H5L_TYPE_SOFT:
+ {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, (char *)linkValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ case H5L_TYPE_EXTERNAL:
+ {
+ if ((status = H5Lunpack_elink_val((char *)linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, (const char **)&file_name, (const char**)&obj_name)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, obj_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, link_value, 1, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
- infobuf.type = -1;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- /* get the length of the link valuee */
- status = H5Lget_info_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id);
- if(status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = infobuf.u.val_size;
- if(buf_size == 0) {
- h5libraryError(env);
- } /* end if */
- else {
- lValue = (void*)HDmalloc(buf_size);
- if (lValue == NULL) {
- h5outOfMemory(env, "H5Lget_val_by_idx: malloc failed ");
- } /* end if */
- else {
- status = H5Lget_val_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (void*)lValue, (size_t)buf_size, (hid_t)access_id);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else if(infobuf.type == H5L_TYPE_EXTERNAL) {
- status = H5Lunpack_elink_val((char*)lValue, (size_t)infobuf.u.val_size, (unsigned*)NULL, (const char**)&file_name, (const char**)&obj_name);
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR obj_name);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val_by_idx: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
-
- str = ENVPTR->NewStringUTF(ENVPAR file_name);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val_by_idx: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 1, str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR (char *)lValue);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Lget_val_by_idx: return string not created");
- } /* end if */
- else {
- ENVPTR->SetObjectArrayElement(ENVPAR link_value, 0, str);
- } /* end else */
- } /* end else */
- HDfree(lValue);
- } /* end else */
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, lName);
+ case H5L_TYPE_ERROR:
+ case H5L_TYPE_MAX:
+ case H5L_TYPE_HARD:
+ default:
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: invalid link type");
+ break;
}
+done:
+ if (linkValue)
+ HDfree(linkValue);
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
+
return infobuf.type;
} /* end Java_hdf_hdf5lib_H5_H5Lget_1val_1by_1idx */
@@ -527,73 +545,81 @@ Java_hdf_hdf5lib_H5_H5Lmove
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Lmove((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lmove: src name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lmove: dest name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Lmove((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
} /* end Java_hdf_hdf5lib_H5_H5Lmove */
static herr_t
H5L_iterate_cb
(hid_t g_id, const char *name, const H5L_info_t *info, void *cb_data)
{
- JNIEnv *cbenv;
- jint status;
- jclass cls;
- jmethodID mid;
- jstring str;
- jmethodID constructor;
- jvalue args[5];
- jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/hdf5lib/callbacks/H5L_iterate_t;)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
-
- args[0].i = info->type;
- args[1].z = info->corder_valid;
- args[2].j = info->corder;
- args[3].i = info->cset;
- if(info->type==0)
- args[4].j = (jlong)info->u.address;
- else
- args[4].j = (jlong)info->u.val_size;
- // get a reference to your class if you don't have it already
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5L_info_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(IZJIJ)V");
- if (constructor != 0) {
- cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (cb_info_t == NULL) {
- printf("FATAL ERROR: hdf/hdf5lib/structs/H5L_info_t: Creation failed\n");
- }
- else {
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, g_id, str, cb_info_t, op_data);
- }
- } /* end if */
- } /* end if */
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return status;
+ jmethodID constructor, mid;
+ jobject cb_info_t = NULL;
+ jobject visit_callback = wrapper->visit_callback;
+ jstring str;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jvalue args[5];
+ void *op_data = (void *)wrapper->op_data;
+ jint status;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5L_iterate_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/hdf5lib/callbacks/H5L_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[0].i = info->type;
+ args[1].z = info->corder_valid;
+ args[2].j = info->corder;
+ args[3].i = info->cset;
+ args[4].j = (info->type == H5L_TYPE_HARD) ? (jlong)info->u.address : (jlong)info->u.val_size;
+
+ /* Get a reference to your class if you don't have it already */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(IZJIJ)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("FATAL ERROR: hdf/hdf5lib/structs/H5L_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
+ return (herr_t)status;
} /* end H5L_iterate_cb */
/*
@@ -606,20 +632,23 @@ Java_hdf_hdf5lib_H5_H5Lvisit
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jobject callback_op, jobject op_data)
{
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+ herr_t status = FAIL;
+
+ UNUSED(clss);
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Lvisit: op_data or callback_op is NULL");
- } /* end if */
- else {
- status = H5Lvisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit: callback_op is NULL");
+ if ((status = H5Lvisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return status;
} /* end Java_hdf_hdf5lib_H5_H5Lvisit */
@@ -633,26 +662,28 @@ Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jobject callback_op, jobject op_data, jlong access_id)
{
- herr_t status = -1;
- const char *lName;
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+ const char *grpName = NULL;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Lvisit_by_name: op_data or callback_op is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Lvisit_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit_by_name: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit_by_name: callback_op is NULL");
- if (status < 0)
- h5libraryError(env);
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lvisit_by_name: group name not pinned");
+
+ if ((status = H5Lvisit_by_name((hid_t)grp_id, grpName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return status;
} /* end Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name */
@@ -667,22 +698,24 @@ Java_hdf_hdf5lib_H5_H5Literate
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data)
{
- hsize_t start_idx = (hsize_t)idx;
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
+ cb_wrapper wrapper = { callback_op, op_data };
+ hsize_t start_idx = (hsize_t)idx;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Literate: op_data or callback_op is NULL");
- } /* end if */
- else {
- status = H5Literate((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate: callback_op is NULL");
+ if ((status = H5Literate((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t *)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return status;
} /* end Java_hdf_hdf5lib_H5_H5Literate */
@@ -696,27 +729,29 @@ Java_hdf_hdf5lib_H5_H5Literate_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jlong idx, jobject callback_op, jobject op_data, jlong access_id)
{
- hsize_t start_idx = (hsize_t)idx;
- herr_t status = -1;
- const char *lName;
+ cb_wrapper wrapper = { callback_op, op_data };
+ const char *groupName = NULL;
+ hsize_t start_idx = (hsize_t)idx;
+ herr_t status = FAIL;
- ENVPTR->GetJavaVM(ENVPAR &jvm);
- cb_wrapper wrapper = {callback_op, op_data};
+ UNUSED(clss);
- if ((op_data == NULL) || (callback_op == NULL)) {
- h5nullArgument(env, "H5Literate_by_name: op_data or callback_op is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Literate_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, lName);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate_by_name: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate_by_name: callback_op is NULL");
- if (status < 0)
- h5libraryError(env);
- }
- } /* end else */
+ PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Literate_by_name: group name not pinned");
+
+ if ((status = H5Literate_by_name((hid_t)grp_id, groupName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (groupName)
+ UNPIN_JAVA_STRING(ENVONLY, name, groupName);
return status;
} /* end Java_hdf_hdf5lib_H5_H5Literate_1by_1name */
@@ -730,11 +765,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Lis_1registered
(JNIEnv *env, jclass clss, jint link_cls_id)
{
- htri_t ret_val = H5Lis_registered((H5L_type_t)link_cls_id);
+ htri_t ret_val = FAIL;
- if (ret_val < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((ret_val = H5Lis_registered((H5L_type_t)link_cls_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (int)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Lis_1registered */
@@ -747,8 +785,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Lunregister
(JNIEnv *env, jclass clss, jint link_cls_id)
{
+ UNUSED(clss);
+
if (H5Lunregister((H5L_type_t)link_cls_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Lunregister */
diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c
index 1de505a..0b1a984 100644
--- a/java/src/jni/h5oImp.c
+++ b/java/src/jni/h5oImp.c
@@ -26,6 +26,9 @@ extern "C" {
#include "h5jni.h"
#include "h5oImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@@ -48,18 +51,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Oopen
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id)
{
- hid_t status = -1;
- const char *oName;
+ const char *objName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- status = H5Oopen((hid_t)loc_id, oName, (hid_t)access_plist_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, oName);
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oopen: object name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Oopen((hid_t)loc_id, objName, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Oopen */
@@ -73,11 +77,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Oclose
(JNIEnv *env, jclass clss, jlong object_id)
{
- herr_t retVal = H5Oclose((hid_t)object_id);
+ herr_t retVal = FAIL;
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Oclose((hid_t)object_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Oclose */
@@ -91,19 +98,23 @@ Java_hdf_hdf5lib_H5_H5Ocopy
(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name,
jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lCurName;
- const char *lDstName;
+ const char *lCurName = NULL;
+ const char *lDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
- if (lCurName != NULL && lDstName != NULL) {
- status = H5Ocopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING_TWO(cur_name, lCurName, dst_name, lDstName);
+ PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Ocopy: src name not pinned");
+ PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Ocopy: dest name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Ocopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (lDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, lDstName);
+ if (lCurName)
+ UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName);
} /* end Java_hdf_hdf5lib_H5_H5Ocopy */
/*
@@ -115,57 +126,61 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Oget_1info
(JNIEnv *env, jclass clss, jlong loc_id, jint fields)
{
- herr_t status = -1;
- H5O_info_t infobuf;
- jvalue args[12];
- jobject hdrinfobuf;
- jobject ihinfobuf1;
- jobject ihinfobuf2;
- jobject ret_obj = NULL;
-
- status = H5Oget_info2((hid_t)loc_id, &infobuf, (unsigned)fields);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = (jint)infobuf.hdr.version;
- args[1].i = (jint)infobuf.hdr.nmesgs;
- args[2].i = (jint)infobuf.hdr.nchunks;
- args[3].i = (jint)infobuf.hdr.flags;
- args[4].j = (jlong)infobuf.hdr.space.total;
- args[5].j = (jlong)infobuf.hdr.space.meta;
- args[6].j = (jlong)infobuf.hdr.space.mesg;
- args[7].j = (jlong)infobuf.hdr.space.free;
- args[8].j = (jlong)infobuf.hdr.mesg.present;
- args[9].j = (jlong)infobuf.hdr.mesg.shared;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args);
- hdrinfobuf = ret_obj;
-
- args[0].j = (jlong)infobuf.meta_size.obj.index_size;
- args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf1 = ret_obj;
- args[0].j = (jlong)infobuf.meta_size.attr.index_size;
- args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf2 = ret_obj;
-
- args[0].j = (jlong)infobuf.fileno;
- args[1].j = (jlong)infobuf.addr;
- args[2].i = infobuf.type;
- args[3].i = (jint)infobuf.rc;
- args[4].j = (jlong)infobuf.num_attrs;
- args[5].j = infobuf.atime;
- args[6].j = infobuf.mtime;
- args[7].j = infobuf.ctime;
- args[8].j = infobuf.btime;
- args[9].l = hdrinfobuf;
- args[10].l = ihinfobuf1;
- args[11].l = ihinfobuf2;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
- }
-
+ H5O_info_t infobuf;
+ jobject hdrinfobuf;
+ jobject ihinfobuf1;
+ jobject ihinfobuf2;
+ jvalue args[12];
+ herr_t status = FAIL;
+ jobject ret_obj = NULL;
+
+ UNUSED(clss);
+
+ if ((status = H5Oget_info2((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = (jint)infobuf.hdr.version;
+ args[1].i = (jint)infobuf.hdr.nmesgs;
+ args[2].i = (jint)infobuf.hdr.nchunks;
+ args[3].i = (jint)infobuf.hdr.flags;
+ args[4].j = (jlong)infobuf.hdr.space.total;
+ args[5].j = (jlong)infobuf.hdr.space.meta;
+ args[6].j = (jlong)infobuf.hdr.space.mesg;
+ args[7].j = (jlong)infobuf.hdr.space.free;
+ args[8].j = (jlong)infobuf.hdr.mesg.present;
+ args[9].j = (jlong)infobuf.hdr.mesg.shared;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args, ret_obj);
+ hdrinfobuf = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.obj.index_size;
+ args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf1 = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.attr.index_size;
+ args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf2 = ret_obj;
+
+ args[0].j = (jlong)infobuf.fileno;
+ args[1].j = (jlong)infobuf.addr;
+ args[2].i = infobuf.type;
+ args[3].i = (jint)infobuf.rc;
+ args[4].j = (jlong)infobuf.num_attrs;
+ args[5].j = infobuf.atime;
+ args[6].j = infobuf.mtime;
+ args[7].j = infobuf.ctime;
+ args[8].j = infobuf.btime;
+ args[9].l = hdrinfobuf;
+ args[10].l = ihinfobuf1;
+ args[11].l = ihinfobuf2;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
+
+done:
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1info */
@@ -178,62 +193,66 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint fields, jlong access_id)
{
- const char *lName;
- herr_t status = -1;
H5O_info_t infobuf;
- jvalue args[12];
+ const char *objName = NULL;
jobject hdrinfobuf;
jobject ihinfobuf1;
jobject ihinfobuf2;
+ jvalue args[12];
+ herr_t status = FAIL;
jobject ret_obj = NULL;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Oget_info_by_name2((hid_t)loc_id, lName, &infobuf, (unsigned)fields, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = (jint)infobuf.hdr.version;
- args[1].i = (jint)infobuf.hdr.nmesgs;
- args[2].i = (jint)infobuf.hdr.nchunks;
- args[3].i = (jint)infobuf.hdr.flags;
- args[4].j = (jlong)infobuf.hdr.space.total;
- args[5].j = (jlong)infobuf.hdr.space.meta;
- args[6].j = (jlong)infobuf.hdr.space.mesg;
- args[7].j = (jlong)infobuf.hdr.space.free;
- args[8].j = (jlong)infobuf.hdr.mesg.present;
- args[9].j = (jlong)infobuf.hdr.mesg.shared;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args);
- hdrinfobuf = ret_obj;
-
- args[0].j = (jlong)infobuf.meta_size.obj.index_size;
- args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf1 = ret_obj;
- args[0].j = (jlong)infobuf.meta_size.attr.index_size;
- args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf2 = ret_obj;
-
- args[0].j = (jlong)infobuf.fileno;
- args[1].j = (jlong)infobuf.addr;
- args[2].i = infobuf.type;
- args[3].i = (jint)infobuf.rc;
- args[4].j = (jlong)infobuf.num_attrs;
- args[5].j = infobuf.atime;
- args[6].j = infobuf.mtime;
- args[7].j = infobuf.ctime;
- args[8].j = infobuf.btime;
- args[9].l = hdrinfobuf;
- args[10].l = ihinfobuf1;
- args[11].l = ihinfobuf2;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
- }
- }
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_info_by_name: object name not pinned");
+
+ if ((status = H5Oget_info_by_name2((hid_t)loc_id, objName, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = (jint)infobuf.hdr.version;
+ args[1].i = (jint)infobuf.hdr.nmesgs;
+ args[2].i = (jint)infobuf.hdr.nchunks;
+ args[3].i = (jint)infobuf.hdr.flags;
+ args[4].j = (jlong)infobuf.hdr.space.total;
+ args[5].j = (jlong)infobuf.hdr.space.meta;
+ args[6].j = (jlong)infobuf.hdr.space.mesg;
+ args[7].j = (jlong)infobuf.hdr.space.free;
+ args[8].j = (jlong)infobuf.hdr.mesg.present;
+ args[9].j = (jlong)infobuf.hdr.mesg.shared;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args, ret_obj);
+ hdrinfobuf = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.obj.index_size;
+ args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf1 = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.attr.index_size;
+ args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf2 = ret_obj;
+
+ args[0].j = (jlong)infobuf.fileno;
+ args[1].j = (jlong)infobuf.addr;
+ args[2].i = infobuf.type;
+ args[3].i = (jint)infobuf.rc;
+ args[4].j = (jlong)infobuf.num_attrs;
+ args[5].j = infobuf.atime;
+ args[6].j = infobuf.mtime;
+ args[7].j = infobuf.ctime;
+ args[8].j = infobuf.btime;
+ args[9].l = hdrinfobuf;
+ args[10].l = ihinfobuf1;
+ args[11].l = ihinfobuf2;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name */
@@ -248,62 +267,66 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id,
jstring name, jint index_field, jint order, jlong link_n, jint fields, jlong access_id)
{
- const char *lName;
- herr_t status;
H5O_info_t infobuf;
- jvalue args[12];
+ const char *grpName = NULL;
jobject hdrinfobuf;
jobject ihinfobuf1;
jobject ihinfobuf2;
+ jvalue args[12];
+ herr_t status = FAIL;
jobject ret_obj = NULL;
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Oget_info_by_idx2((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = (jint)infobuf.hdr.version;
- args[1].i = (jint)infobuf.hdr.nmesgs;
- args[2].i = (jint)infobuf.hdr.nchunks;
- args[3].i = (jint)infobuf.hdr.flags;
- args[4].j = (jlong)infobuf.hdr.space.total;
- args[5].j = (jlong)infobuf.hdr.space.meta;
- args[6].j = (jlong)infobuf.hdr.space.mesg;
- args[7].j = (jlong)infobuf.hdr.space.free;
- args[8].j = (jlong)infobuf.hdr.mesg.present;
- args[9].j = (jlong)infobuf.hdr.mesg.shared;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args);
- hdrinfobuf = ret_obj;
-
- args[0].j = (jlong)infobuf.meta_size.obj.index_size;
- args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf1 = ret_obj;
- args[0].j = (jlong)infobuf.meta_size.attr.index_size;
- args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
- ihinfobuf2 = ret_obj;
-
- args[0].j = (jlong)infobuf.fileno;
- args[1].j = (jlong)infobuf.addr;
- args[2].i = infobuf.type;
- args[3].i = (jint)infobuf.rc;
- args[4].j = (jlong)infobuf.num_attrs;
- args[5].j = infobuf.atime;
- args[6].j = infobuf.mtime;
- args[7].j = infobuf.ctime;
- args[8].j = infobuf.btime;
- args[9].l = hdrinfobuf;
- args[10].l = ihinfobuf1;
- args[11].l = ihinfobuf2;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
- }
- }
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oget_info_by_idx: group name not pinned");
+
+ if ((status = H5Oget_info_by_idx2((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = (jint)infobuf.hdr.version;
+ args[1].i = (jint)infobuf.hdr.nmesgs;
+ args[2].i = (jint)infobuf.hdr.nchunks;
+ args[3].i = (jint)infobuf.hdr.flags;
+ args[4].j = (jlong)infobuf.hdr.space.total;
+ args[5].j = (jlong)infobuf.hdr.space.meta;
+ args[6].j = (jlong)infobuf.hdr.space.mesg;
+ args[7].j = (jlong)infobuf.hdr.space.free;
+ args[8].j = (jlong)infobuf.hdr.mesg.present;
+ args[9].j = (jlong)infobuf.hdr.mesg.shared;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t", "(IIIIJJJJJJ)V", args, ret_obj);
+ hdrinfobuf = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.obj.index_size;
+ args[1].j = (jlong)infobuf.meta_size.obj.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf1 = ret_obj;
+
+ args[0].j = (jlong)infobuf.meta_size.attr.index_size;
+ args[1].j = (jlong)infobuf.meta_size.attr.heap_size;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
+ ihinfobuf2 = ret_obj;
+
+ args[0].j = (jlong)infobuf.fileno;
+ args[1].j = (jlong)infobuf.addr;
+ args[2].i = infobuf.type;
+ args[3].i = (jint)infobuf.rc;
+ args[4].j = (jlong)infobuf.num_attrs;
+ args[5].j = infobuf.atime;
+ args[6].j = infobuf.mtime;
+ args[7].j = infobuf.ctime;
+ args[8].j = infobuf.btime;
+ args[9].l = hdrinfobuf;
+ args[10].l = ihinfobuf1;
+ args[11].l = ihinfobuf2;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx */
@@ -318,130 +341,135 @@ Java_hdf_hdf5lib_H5_H5Olink
(JNIEnv *env, jclass clss, jlong cur_loc_id, jlong dst_loc_id,
jstring dst_name, jlong create_id, jlong access_id)
{
- herr_t status = -1;
- const char *lDstName;
+ const char *linkDstName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(dst_name, lDstName);
- if (lDstName != NULL) {
- status = H5Olink((hid_t)cur_loc_id, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(dst_name, lDstName);
+ PIN_JAVA_STRING(ENVONLY, dst_name, linkDstName, NULL, "H5Olink: link destination name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Olink((hid_t)cur_loc_id, (hid_t)dst_loc_id, linkDstName, (hid_t)create_id, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (linkDstName)
+ UNPIN_JAVA_STRING(ENVONLY, dst_name, linkDstName);
} /* end Java_hdf_hdf5lib_H5_H5Olink */
static herr_t
H5O_iterate_cb
(hid_t g_id, const char *name, const H5O_info_t *info, void *cb_data)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
- jmethodID constructor;
- jvalue args[12];
- jobject hdrinfobuf;
- jobject ihinfobuf1;
- jobject ihinfobuf2;
- jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
+ jmethodID constructor, mid;
+ jobject cb_info_t = NULL;
+ jobject visit_callback = wrapper->visit_callback;
+ jobject hdrinfobuf;
+ jobject ihinfobuf1;
+ jobject ihinfobuf2;
+ jstring str;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jvalue args[12];
+ void *op_data = (void *)wrapper->op_data;
+ jint status = FAIL;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5O_iterate_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5O_info_t;Lhdf/hdf5lib/callbacks/H5O_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ args[0].i = (jint)info->hdr.version;
+ args[1].i = (jint)info->hdr.nmesgs;
+ args[2].i = (jint)info->hdr.nchunks;
+ args[3].i = (jint)info->hdr.flags;
+ args[4].j = (jlong)info->hdr.space.total;
+ args[5].j = (jlong)info->hdr.space.meta;
+ args[6].j = (jlong)info->hdr.space.mesg;
+ args[7].j = (jlong)info->hdr.space.free;
+ args[8].j = (jlong)info->hdr.mesg.present;
+ args[9].j = (jlong)info->hdr.mesg.shared;
+
+ /* Get a reference to the H5_hdr_info_t class */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(IIIIJJJJJJ)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (hdrinfobuf = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_hdr_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ args[0].j = (jlong)info->meta_size.obj.index_size;
+ args[1].j = (jlong)info->meta_size.obj.heap_size;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
- /* printf("JNI H5O_iterate_cb error: AttachCurrentThread failed\n"); */
+ /* Get a reference to the H5_ih_info_t class */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJ)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (ihinfobuf1 = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ args[0].j = (jlong)info->meta_size.attr.index_size;
+ args[1].j = (jlong)info->meta_size.attr.heap_size;
+
+ if (NULL == (ihinfobuf2 = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ args[0].j = (jlong)info->fileno;
+ args[1].j = (jlong)info->addr;
+ args[2].i = info->type;
+ args[3].i = (jint)info->rc;
+ args[4].j = (jlong)info->num_attrs;
+ args[5].j = info->atime;
+ args[6].j = info->mtime;
+ args[7].j = info->ctime;
+ args[8].j = info->btime;
+ args[9].l = hdrinfobuf;
+ args[10].l = ihinfobuf1;
+ args[11].l = ihinfobuf2;
+
+ /* Get a reference to the H5O_info_t class */
+ if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5O_info_t")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ /* Get a reference to the constructor; the name is <init> */
+ if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) {
+ HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_info_t: Creation failed\n");
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5O_info_t;Lhdf/hdf5lib/callbacks/H5O_iterate_t;)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
-
- args[0].i = (jint)info->hdr.version;
- args[1].i = (jint)info->hdr.nmesgs;
- args[2].i = (jint)info->hdr.nchunks;
- args[3].i = (jint)info->hdr.flags;
- args[4].j = (jlong)info->hdr.space.total;
- args[5].j = (jlong)info->hdr.space.meta;
- args[6].j = (jlong)info->hdr.space.mesg;
- args[7].j = (jlong)info->hdr.space.free;
- args[8].j = (jlong)info->hdr.mesg.present;
- args[9].j = (jlong)info->hdr.mesg.shared;
- // get a reference to the H5_hdr_info_t class
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5O_hdr_info_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(IIIIJJJJJJ)V");
- if (constructor != 0) {
- hdrinfobuf = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (hdrinfobuf == NULL) {
- printf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_hdr_info_t: Creation failed\n");
- }
- else {
- args[0].j = (jlong)info->meta_size.obj.index_size;
- args[1].j = (jlong)info->meta_size.obj.heap_size;
- // get a reference to the H5_ih_info_t class
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5_ih_info_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(JJ)V");
- if (constructor != 0) {
- ihinfobuf1 = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (ihinfobuf1 == NULL) {
- printf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n");
- }
- else {
- args[0].j = (jlong)info->meta_size.attr.index_size;
- args[1].j = (jlong)info->meta_size.attr.heap_size;
- ihinfobuf2 = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (ihinfobuf2 == NULL) {
- printf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n");
- }
- else {
- args[0].j = (jlong)info->fileno;
- args[1].j = (jlong)info->addr;
- args[2].i = info->type;
- args[3].i = (jint)info->rc;
- args[4].j = (jlong)info->num_attrs;
- args[5].j = info->atime;
- args[6].j = info->mtime;
- args[7].j = info->ctime;
- args[8].j = info->btime;
- args[9].l = hdrinfobuf;
- args[10].l = ihinfobuf1;
- args[11].l = ihinfobuf2;
- // get a reference to the H5O_info_t class
- cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5O_info_t");
- if (cls != 0) {
- // get a reference to the constructor; the name is <init>
- constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V");
- if (constructor != 0) {
- cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
- if (cb_info_t == NULL) {
- printf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_info_t: Creation failed\n");
- }
- else {
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, g_id, str, cb_info_t, op_data);
- }
- }
- }
- }
- }
- }
- }
- }
- }
- }
- }
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return status;
+ return (herr_t)status;
} /* end H5O_iterate_cb */
/*
@@ -454,24 +482,23 @@ Java_hdf_hdf5lib_H5_H5Ovisit
(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
jobject callback_op, jobject op_data, jint fields)
{
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
-
- ENVPTR->GetJavaVM(ENVPAR &jvm);
-
- if (op_data == NULL) {
- h5nullArgument(env, "H5Ovisit: op_data is NULL");
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Ovisit: callback_op is NULL");
- } /* end if */
- else {
- status = H5Ovisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)&wrapper, (unsigned)fields);
-
- if (status < 0)
- h5libraryError(env);
- }
+ cb_wrapper wrapper = { callback_op, op_data };
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit: callback_op is NULL");
+
+ if ((status = H5Ovisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void *)&wrapper, (unsigned)fields)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return status;
} /* end Java_hdf_hdf5lib_H5_H5Ovisit */
@@ -485,31 +512,28 @@ Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name
(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
jobject callback_op, jobject op_data, jint fields, jlong access_id)
{
- herr_t status = -1;
- const char *lName;
- cb_wrapper wrapper = {callback_op, op_data};
-
- ENVPTR->GetJavaVM(ENVPAR &jvm);
-
- if (op_data == NULL) {
- h5nullArgument(env, "H5Ovisit_by_name: op_data is NULL");
- return -1;
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Ovisit_by_name: callback_op is NULL");
- return -1;
- } /* end if */
- else {
- PIN_JAVA_STRING(name, lName);
- if (lName != NULL) {
- status = H5Ovisit_by_name2((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)&wrapper, (unsigned)fields, (hid_t)access_id);
-
- UNPIN_JAVA_STRING(name, lName);
-
- if (status < 0)
- h5libraryError(env);
- }
- }
+ cb_wrapper wrapper = { callback_op, op_data };
+ const char *objName = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit_by_name: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit_by_name: callback_op is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Ovisit_by_name: object name not pinned");
+
+ if ((status = H5Ovisit_by_name2((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void *)&wrapper, (unsigned)fields, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return status;
} /* end Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name */
@@ -523,24 +547,20 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Oset_1comment
(JNIEnv *env, jclass clss, jlong loc_id, jstring comment)
{
- herr_t status = -1;
const char *oComment = NULL;
- jboolean isCopy;
+ herr_t status = FAIL;
- if (comment == NULL) {
- status = H5Oset_comment((hid_t)loc_id, oComment);
- } /* end if */
- else {
- oComment = ENVPTR->GetStringUTFChars(ENVPAR comment, &isCopy);
- if (oComment != NULL) {
- status = H5Oset_comment((hid_t)loc_id, oComment);
+ UNUSED(clss);
- ENVPTR->ReleaseStringUTFChars(ENVPAR comment, oComment);
- }
- } /* end else */
+ if (NULL != comment)
+ PIN_JAVA_STRING(ENVONLY, comment, oComment, NULL, "H5Oset_comment: object comment not pinned");
- if (status < 0)
- h5libraryError(env);
+ if ((status = H5Oset_comment((hid_t)loc_id, oComment)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (oComment)
+ UNPIN_JAVA_STRING(ENVONLY, comment, oComment);
} /* end Java_hdf_hdf5lib_H5_H5Oset_1comment */
/*
@@ -553,29 +573,26 @@ Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id,
jstring name, jstring comment, jlong access_id)
{
- herr_t status = -1;
- const char *oName;
- const char *oComment;
-
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- if (comment == NULL) {
- status = H5Oset_comment_by_name((hid_t)loc_id, oName, NULL, (hid_t)access_id);
- } /* end if */
- else {
- jboolean isCopy;
- oComment = ENVPTR->GetStringUTFChars(ENVPAR comment, &isCopy);
- if (oComment != NULL) {
- status = H5Oset_comment_by_name((hid_t)loc_id, oName, oComment, (hid_t)access_id);
- ENVPTR->ReleaseStringUTFChars(ENVPAR comment, oComment);
- } /* end if */
- } /* end else */
-
- UNPIN_JAVA_STRING(name, oName);
-
- if (status < 0)
- h5libraryError(env);
- }
+ const char *objName = NULL;
+ const char *objComment = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oset_comment_by_name: object name not pinned");
+
+ if (NULL != comment)
+ PIN_JAVA_STRING(ENVONLY, comment, objComment, &isCopy, "H5Oset_comment_by_name: object comment not pinned");
+
+ if ((status = H5Oset_comment_by_name((hid_t)loc_id, objName, objComment, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (objComment)
+ UNPIN_JAVA_STRING(ENVONLY, comment, objComment);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
} /* end Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name */
/*
@@ -587,39 +604,32 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Oget_1comment
(JNIEnv *env, jclass clss, jlong loc_id)
{
- char *oComment;
- ssize_t buf_size;
- ssize_t status;
jstring str = NULL;
+ ssize_t buf_size;
+ ssize_t status = -1;
+ char *oComment = NULL;
+
+ UNUSED(clss);
+
+ /* Get the length of the comment */
+ if ((buf_size = H5Oget_comment((hid_t)loc_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (buf_size) {
+ if (NULL == (oComment = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Oget_comment: failed to allocate object comment buffer");
+
+ if ((status = H5Oget_comment((hid_t)loc_id, oComment, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ oComment[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, oComment)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
- /* get the length of the comment */
- buf_size = H5Oget_comment((hid_t)loc_id, NULL, 0);
- if (buf_size < 0) {
- h5badArgument( env, "H5Oget_comment: buf_size < 0");
- } /* end if */
- else if (buf_size > 0) {
- buf_size++; /* add extra space for the null terminator */
- oComment = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (oComment == NULL) {
- /* exception -- out of memory */
- h5outOfMemory( env, "H5Oget_comment: malloc failed");
- } /* end if */
- else {
- status = H5Oget_comment((hid_t)loc_id, oComment, (size_t)buf_size);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- /* may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR oComment);
- if (str == NULL) {
- h5JNIFatalError( env, "H5Oget_comment: return string not allocated");
- } /* end if */
- } /* end else */
- HDfree(oComment);
- }
- } /* end else if */
+done:
+ if (oComment)
+ HDfree(oComment);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1comment */
@@ -633,44 +643,38 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
- char *oComment;
- const char *oName;
+ const char *objName = NULL;
+ jstring str = NULL;
ssize_t buf_size;
ssize_t status;
- jstring str = NULL;
+ char *objComment = NULL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_comment_by_name: object name not pinned");
+
+ /* Get the length of the comment */
+ if ((buf_size = H5Oget_comment_by_name((hid_t)loc_id, objName, NULL, 0, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (buf_size) {
+ if (NULL == (objComment = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Oget_comment_by_name: failed to allocate buffer for object comment");
+
+ if ((status = H5Oget_comment_by_name((hid_t)loc_id, objName, objComment, (size_t)buf_size + 1, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ objComment[buf_size] = '\0';
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- /* get the length of the comment */
- buf_size = H5Oget_comment_by_name((hid_t)loc_id, oName, NULL, 0, (hid_t)access_id);
- if (buf_size < 0) {
- h5badArgument( env, "H5Oget_comment_by_name: buf_size < 0");
- } /* end if */
- else if (buf_size > 0) {
- buf_size++; /* add extra space for the null terminator */
- oComment = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (oComment == NULL) {
- h5outOfMemory( env, "H5Oget_comment_by_name: malloc failed");
- } /* end if */
- else {
- status = H5Oget_comment_by_name((hid_t)loc_id, oName, oComment, (size_t)buf_size, (hid_t)access_id);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- /* may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR oComment);
- if (str == NULL) {
- h5JNIFatalError( env, "H5Oget_comment_by_name: return string not allocated");
- } /* end if */
- } /* end else */
- HDfree(oComment);
- }
- } /* end if */
- UNPIN_JAVA_STRING(name, oName);
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, objComment)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
+done:
+ if (objComment)
+ HDfree(objComment);
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
+
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name */
@@ -683,20 +687,21 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Oexists_1by_1name
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
{
+ const char *objName = NULL;
htri_t bval = JNI_FALSE;
- const char *oName;
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- bval = H5Oexists_by_name((hid_t)loc_id, oName, (hid_t)access_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, oName);
+ PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oexists_by_name: object name not pinned");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ if ((bval = H5Oexists_by_name((hid_t)loc_id, objName, (hid_t)access_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (objName)
+ UNPIN_JAVA_STRING(ENVONLY, name, objName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Oexists_1by_1name */
@@ -710,8 +715,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Odecr_1refcount
(JNIEnv *env, jclass clss, jlong object_id)
{
+ UNUSED(clss);
+
if (H5Odecr_refcount((hid_t)object_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
}
/* end Java_hdf_hdf5lib_H5_H5Odecr_1refcount */
/*
@@ -723,8 +733,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Oincr_1refcount
(JNIEnv *env, jclass clss, jlong object_id)
{
+ UNUSED(clss);
+
if (H5Oincr_refcount((hid_t)object_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Oincr_1refcount */
/*
@@ -736,12 +751,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr
(JNIEnv *env, jclass clss, jlong loc_id, jlong addr)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Oopen_by_addr((hid_t)loc_id, (haddr_t)addr );
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Oopen_by_addr((hid_t)loc_id, (haddr_t)addr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr */
@@ -755,18 +772,19 @@ Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jint index_field, jint order, jlong link_n, jlong lapl_id)
{
- hid_t retVal = -1;
- const char *oName;
+ const char *grpName = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, oName);
- if (oName != NULL) {
- retVal = H5Oopen_by_idx((hid_t)loc_id, oName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (hid_t)lapl_id );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, oName);
+ PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oopen_by_idx: object name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Oopen_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (grpName)
+ UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx */
@@ -780,8 +798,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Oflush
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Oflush((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Oflush */
/*
@@ -793,8 +816,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Orefresh
(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Orefresh((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Orefresh */
diff --git a/java/src/jni/h5pACPLImp.c b/java/src/jni/h5pACPLImp.c
new file mode 100644
index 0000000..f6c14e1
--- /dev/null
+++ b/java/src/jni/h5pACPLImp.c
@@ -0,0 +1,36 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pACPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pACPLImp.h b/java/src/jni/h5pACPLImp.h
new file mode 100644
index 0000000..194afc0
--- /dev/null
+++ b/java/src/jni/h5pACPLImp.h
@@ -0,0 +1,27 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PACPL
+#define _Included_hdf_hdf5lib_H5_H5PACPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PACPL */
diff --git a/java/src/jni/h5pDAPLImp.c b/java/src/jni/h5pDAPLImp.c
new file mode 100644
index 0000000..0afbbd6
--- /dev/null
+++ b/java/src/jni/h5pDAPLImp.c
@@ -0,0 +1,322 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pDAPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+extern JavaVM *jvm;
+
+typedef struct _cb_wrapper {
+ jobject visit_callback;
+ jobject op_data;
+} cb_wrapper;
+
+static herr_t H5D_append_cb(hid_t dataset_id, hsize_t *cur_dims, void *cb_data);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk_cache
+ * Signature: (JJJD)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
+ (JNIEnv *env, jclass clss, jlong dapl, jlong rdcc_nslots,
+ jlong rdcc_nbytes, jdouble rdcc_w0)
+{
+ UNUSED(clss);
+
+ if (H5Pset_chunk_cache((hid_t)dapl, (size_t)rdcc_nslots, (size_t)rdcc_nbytes, (double) rdcc_w0) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk_cache
+ * Signature: (J[J[J[D)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
+ (JNIEnv *env, jclass clss, jlong dapl, jlongArray rdcc_nslots,
+ jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
+{
+ jboolean isCopy;
+ jdouble *w0Array = NULL;
+ jlong *rdcc_nslotsArray = NULL;
+ jlong *nbytesArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL != rdcc_w0)
+ PIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, &isCopy, "H5Pget_chunk_cache: rdcc_w0 array not pinned");
+ if (NULL != rdcc_nslots)
+ PIN_LONG_ARRAY(ENVONLY, rdcc_nslots, rdcc_nslotsArray, &isCopy, "H5Pget_chunk_cache: rdcc_nslots array not pinned");
+ if (NULL != rdcc_nbytes)
+ PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_chunk_cache: nbytesArray array not pinned");
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long rdcc_nslots_temp = *rdcc_nslotsArray;
+ long long nbytes_temp = *nbytesArray;
+ size_t rdcc_nslots_t = (size_t) rdcc_nslots_temp;
+ size_t nbytes_t = (size_t) nbytes_temp;
+
+ if ((status = H5Pget_chunk_cache((hid_t)dapl, &rdcc_nslots_t, &nbytes_t, (double *)w0Array)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ *rdcc_nslotsArray = (jlong)rdcc_nslots_t;
+ *nbytesArray = (jlong)nbytes_t;
+ } /* end direct cast special handling */
+
+done:
+ if (nbytesArray)
+ UNPIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, (status < 0) ? JNI_ABORT : 0);
+ if (rdcc_nslotsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, rdcc_nslots, rdcc_nslotsArray, (status < 0) ? JNI_ABORT : 0);
+ if (w0Array)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, (status < 0) ? JNI_ABORT : 0);
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_efile_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
+ (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
+{
+ const char *extFilePrefix = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, prefix, extFilePrefix, NULL, "H5Pset_efile_prefix: external file prefix not pinned");
+
+ if ((retVal = H5Pset_efile_prefix((hid_t)dapl_id, extFilePrefix)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (extFilePrefix)
+ UNPIN_JAVA_STRING(ENVONLY, prefix, extFilePrefix);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_efile_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
+ (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+ ssize_t prefix_size = -1;
+ char *pre = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ if ((prefix_size = H5Pget_efile_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t)prefix_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: memory allocation failed");
+
+ if (H5Pget_efile_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ pre[(size_t)prefix_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (pre)
+ HDfree(pre);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_append_flush
+ * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
+ (JNIEnv *env, jclass clss, jlong plist_id, jint ndims, jlongArray boundary, jobject callback_op, jobject op_data)
+{
+ cb_wrapper wrapper = { callback_op, op_data };
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_append_flush: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_append_flush: callback_op is NULL");
+
+ if ((status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t *)boundary, (H5D_append_cb_t)H5D_append_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1append_1flush */
+
+/*
+ * TODO: H5Pget_append_flush
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_view
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
+ (JNIEnv *env, jclass clss, jlong dapl_id, jint view)
+{
+ UNUSED(clss);
+
+ if (H5Pset_virtual_view((hid_t)dapl_id, (H5D_vds_view_t)view) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_view
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
+ (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+ H5D_vds_view_t virtual_view = H5D_VDS_ERROR;
+
+ UNUSED(clss);
+
+ if (H5Pget_virtual_view((hid_t)dapl_id, &virtual_view) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)virtual_view;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_printf_gap
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
+ (JNIEnv *env, jclass clss, jlong dapl_id, jlong gap_size)
+{
+ UNUSED(clss);
+
+ if (H5Pset_virtual_printf_gap((hid_t)dapl_id, (hsize_t)gap_size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_printf_gap
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
+ (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+ hsize_t gap_size = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_virtual_printf_gap((hid_t)dapl_id, &gap_size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)gap_size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap */
+
+static herr_t
+H5D_append_cb
+ (hid_t dataset_id, hsize_t *cur_dims, void *cb_data)
+{
+ cb_wrapper *wrapper = (cb_wrapper *)cb_data;
+ jlongArray cur_dimsArray;
+ jmethodID mid;
+ jobject visit_callback = wrapper->visit_callback;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ void *op_data = (void *)wrapper->op_data;
+ jint status = -1;
+
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5D_append_cb: failed to attach current thread to JVM");
+ }
+
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(J[JLhdf/hdf5lib/callbacks/H5D_append_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL != cur_dims) {
+ if (NULL == (cur_dimsArray = CBENVPTR->NewLongArray(CBENVONLY, 2)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ CBENVPTR->SetLongArrayRegion(CBENVONLY, cur_dimsArray, 0, 2, (const jlong *)cur_dims);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, dataset_id, cur_dims, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (CBENVONLY)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
+ return (herr_t)status;
+} /* end H5D_append_cb */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pDAPLImp.h b/java/src/jni/h5pDAPLImp.h
new file mode 100644
index 0000000..a9fbadd
--- /dev/null
+++ b/java/src/jni/h5pDAPLImp.h
@@ -0,0 +1,112 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PDAPL
+#define _Included_hdf_hdf5lib_H5_H5PDAPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk_cache
+ * Signature: (JJJD)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
+(JNIEnv *, jclass, jlong, jlong, jlong, jdouble);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk_cache
+ * Signature: (J[J[J[D)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
+(JNIEnv *, jclass, jlong, jlongArray, jlongArray, jdoubleArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_efile_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
+(JNIEnv *, jclass, jlong, jstring);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_efile_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_append_flush
+ * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
+ (JNIEnv*, jclass, jlong, jint, jlongArray, jobject, jobject);
+
+/*
+ * TODO: H5Pget_append_flush
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_view
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_view
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_printf_gap
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_printf_gap
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PDAPL */
diff --git a/java/src/jni/h5pDCPLImp.c b/java/src/jni/h5pDCPLImp.c
new file mode 100644
index 0000000..0671843
--- /dev/null
+++ b/java/src/jni/h5pDCPLImp.c
@@ -0,0 +1,1404 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pDCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_layout
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1layout
+ (JNIEnv *env, jclass clss, jlong plist, jint layout)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_layout((hid_t)plist, (H5D_layout_t)layout)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1layout */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_layout
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1layout
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ H5D_layout_t retVal = H5D_LAYOUT_ERROR;
+
+ UNUSED(clss);
+
+ if (H5D_LAYOUT_ERROR == (retVal = H5Pget_layout((hid_t)plist)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1layout */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk
+ * Signature: (JI[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk
+ (JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim)
+{
+ jboolean isCopy;
+ hsize_t *da = NULL;
+ hsize_t *lp = NULL;
+ size_t i;
+ size_t rank;
+ jsize arrLen;
+ jbyte *theArray = NULL;
+ jlong *jlp = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (ndims < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: ndims < 0");
+ if (NULL == dim)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dim array is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, dim)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dim array length < 0");
+ }
+
+ rank = (size_t) arrLen / sizeof(jlong);
+ if (rank < (size_t) ndims)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dims array rank < ndims");
+
+ PIN_BYTE_ARRAY(ENVONLY, dim, theArray, &isCopy, "H5Pset_chunk: dim array not pinned");
+
+ if (NULL == (da = lp = (hsize_t *) HDmalloc(rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_chunk: memory allocation failed");
+
+ jlp = (jlong *)theArray;
+ for (i = 0; i < rank; i++) {
+ *lp = (hsize_t)*jlp;
+ lp++;
+ jlp++;
+ } /* end if */
+
+ if ((status = H5Pset_chunk((hid_t)plist, (int)ndims, da)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (da)
+ HDfree(da);
+ if (theArray)
+ UNPIN_BYTE_ARRAY(ENVONLY, dim, theArray, JNI_ABORT);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk
+ * Signature: (JI[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk
+ (JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims)
+{
+ jboolean isCopy;
+ hsize_t *da = NULL;
+ jlong *theArray = NULL;
+ jsize arrLen;
+ int i;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_chunk: dims is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_chunk: dims array length < 0");
+ }
+ if (arrLen < max_ndims)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_chunk: dims array < max_ndims");
+
+ PIN_LONG_ARRAY(ENVONLY, dims, theArray, &isCopy, "H5Pget_chunk: input dims not pinned");
+
+ if (NULL == (da = (hsize_t *) HDmalloc((size_t)max_ndims * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_chunk: memory allocation failed");
+
+ if ((status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < max_ndims; i++)
+ theArray[i] = (jlong)da[i];
+
+done:
+ if (da)
+ HDfree(da);
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk_opts
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jint opts)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_chunk_opts((hid_t)dcpl_id, (unsigned)opts)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk_opts
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
+ (JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+ unsigned opts = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_chunk_opts((hid_t)dcpl_id, &opts) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)opts;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_dset_no_attrs_hint
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
+(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize)
+{
+ hbool_t minimize_val;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ minimize_val = (JNI_TRUE == minimize) ? TRUE : FALSE;
+
+ if ((retVal = H5Pset_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t)minimize_val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_dset_no_attrs_hint
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
+(JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+ hbool_t minimize = FALSE;
+ jboolean bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if (H5Pget_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t *)&minimize) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (minimize == TRUE)
+ bval = JNI_TRUE;
+
+done:
+ return bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_deflate
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1deflate
+ (JNIEnv *env, jclass clss, jlong plist, jint level)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_deflate((hid_t)plist, (unsigned)level)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1deflate */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fill_value
+ * Signature: (JJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
+ (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value)
+{
+ jboolean isCopy;
+ jbyte *byteP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value) {
+ if ((status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ else {
+ PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Pget_fill_value: value array not pinned");
+
+ if ((status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+
+done:
+ if (byteP)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, JNI_ABORT);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1value */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fill_value
+ * Signature: (JJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
+ (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value)
+{
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *byteP = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_fill_value: value is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Pget_fill_value: value array not pinned");
+
+ if ((status = H5Pget_fill_value((hid_t)plist_id, (hid_t)type_id, byteP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (byteP)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1value */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pfill_value_defined
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
+ (JNIEnv *env, jclass clss, jlong plist, jintArray status)
+{
+ H5D_fill_value_t value = H5D_FILL_VALUE_ERROR;
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == status)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pfill_value_defined: status is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, status, theArray, &isCopy, "H5Pfill_value_defined: status not pinned");
+
+ if ((retVal = H5Pfill_value_defined((hid_t)plist, &value)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jint)value;
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, status, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fill_time
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
+ (JNIEnv *env, jclass clss, jlong plist, jint fill_time)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fill_time((hid_t)plist, (H5D_fill_time_t)fill_time)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1time */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fill_time
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
+ (JNIEnv *env, jclass clss, jlong plist, jintArray fill_time)
+{
+ H5D_fill_time_t time = H5D_FILL_TIME_ERROR;
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == fill_time)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_fill_time: fill_time is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, fill_time, theArray, &isCopy, "H5Pget_fill_time: fill_time not pinned");
+
+ if ((retVal = H5Pget_fill_time((hid_t)plist, &time)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jint)time;
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, fill_time, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1time */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_alloc_time
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
+ (JNIEnv *env, jclass clss, jlong plist, jint alloc_time)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_alloc_time((hid_t)plist, (H5D_alloc_time_t)alloc_time)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_alloc_time
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
+ (JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time)
+{
+ H5D_alloc_time_t time = H5D_ALLOC_TIME_ERROR;
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == alloc_time)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_alloc_time: alloc_time is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, alloc_time, theArray, &isCopy, "H5Pget_alloc_time: alloc_time not pinned");
+
+ if ((retVal = H5Pget_alloc_time((hid_t)plist, &time)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = time;
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, alloc_time, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_filter
+ * Signature: (JIIJ[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1filter
+ (JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags,
+ jlong cd_nelmts, jintArray cd_values)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == cd_values) {
+ if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter,
+ (unsigned int)flags, (size_t)cd_nelmts, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+ else {
+ PIN_INT_ARRAY(ENVONLY, cd_values, theArray, &isCopy, "H5Pset_filter: input array not pinned");
+
+ if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter,
+ (unsigned int)flags, (size_t)cd_nelmts, (const unsigned int *)theArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, theArray, JNI_ABORT);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1filter */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pall_filters_avail
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
+ (JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+ htri_t bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if ((bval = H5Pall_filters_avail((hid_t)dcpl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return (jboolean)bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_nfilters
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1nfilters
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ int retVal = -1;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_nfilters((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1nfilters */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter
+ (JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags,
+ jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name)
+{
+ jboolean isCopy;
+ jstring str;
+ jint *flagsArray = NULL;
+ jlong *cd_nelmtsArray = NULL;
+ jint *cd_valuesArray = NULL;
+ char *filter = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (namelen <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: namelen <= 0");
+ if (NULL == flags)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: flags is NULL");
+ if (NULL == cd_nelmts)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: cd_nelmts is NULL");
+ if (NULL == cd_values)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: cd_values is NULL");
+
+ if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter: memory allocation failed");
+
+ PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter: flags array not pinned");
+ PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter: nelmts array not pinned");
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter: elmts array not pinned");
+
+
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ {
+ unsigned int filter_config;
+ long long cd_nelmts_temp = *cd_nelmtsArray;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
+ (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
+ (size_t)namelen, filter, &filter_config)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ filter[namelen - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ }
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (cd_valuesArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (flagsArray)
+ UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0)
+ if (filter)
+ HDfree(filter);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter2
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter2
+ (JNIEnv *env, jclass clss, jlong plist, jint filter_number,
+ jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen,
+ jobjectArray name, jintArray filter_config)
+{
+ jboolean isCopy;
+ jstring str;
+ jint *flagsArray = NULL;
+ jlong *cd_nelmtsArray = NULL;
+ jint *cd_valuesArray = NULL;
+ jint *filter_configArray = NULL;
+ char *filter = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (namelen <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: namelen <= 0");
+ if (NULL == flags)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: flags is NULL");
+ if (NULL == cd_nelmts)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: cd_nelmts is NULL");
+ if (NULL == filter_config)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: filter_config is NULL");
+
+ if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter2: memory allocation failed");
+
+ PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter2: flags array not pinned");
+ PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter2: nelmts array not pinned");
+ PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, "H5Pget_filter2: filter_config array not pinned");
+
+ if (NULL == cd_values && *cd_nelmtsArray == 0) {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long cd_nelmts_temp = 0;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
+ (unsigned int *)flagsArray, &cd_nelmts_t, NULL,
+ (size_t)namelen, filter, (unsigned int *)filter_configArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ filter[namelen - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ }
+ else {
+ if (NULL == cd_values)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: cd_values is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter2: elmts array not pinned");
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long cd_nelmts_temp = *cd_nelmtsArray;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
+ (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
+ (size_t)namelen, filter, (unsigned int *)filter_configArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ filter[namelen - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ } /* end direct cast special */
+ }
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter2: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (cd_valuesArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, (status < 0) ? JNI_ABORT : 0);
+ if (filter_configArray)
+ UNPIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (flagsArray)
+ UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
+ if (filter)
+ HDfree(filter);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter2 */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter_by_id
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
+ (JNIEnv *env, jclass clss, jlong plist, jint filter,
+ jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name)
+{
+ jboolean isCopy;
+ jstring str;
+ jlong *cd_nelmtsArray = NULL;
+ jint *cd_valuesArray = NULL;
+ jint *flagsArray = NULL;
+ char *aName = NULL;
+ long bs;
+ int rank;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ bs = (long)namelen;
+
+ if (bs <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: namelen <= 0");
+ if (NULL == flags)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: flags is NULL");
+ if (NULL == cd_nelmts)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: cd_nelmts is NULL");
+ if (NULL == cd_values)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: cd_values is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: name is NULL");
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id: memory allocation failed");
+
+ PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id: flags not pinned");
+ PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id: cd_nelms not pinned");
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter_by_id: cd_values array not pinned");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, cd_values)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: cd_values array length < 0");
+ }
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ unsigned int filter_config;
+ long long cd_nelmts_temp = *cd_nelmtsArray;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter,
+ (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
+ (size_t)namelen, (char *)aName, &filter_config)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ aName[bs - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ } /* end direct cast special */
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (cd_valuesArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (flagsArray)
+ UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
+ if (aName)
+ HDfree(aName);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter_by_id2
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
+ (JNIEnv *env, jclass clss, jlong plist, jint filter,
+ jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name, jintArray filter_config)
+{
+ jboolean isCopy;
+ jstring str;
+ jlong *cd_nelmtsArray = NULL;
+ jint *cd_valuesArray = NULL;
+ jint *flagsArray = NULL;
+ jint *filter_configArray = NULL;
+ long bs;
+ char *aName = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ bs = (long)namelen;
+
+ if (bs <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: namelen <= 0");
+ if (NULL == flags)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: flags is NULL");
+ if (NULL == cd_nelmts)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: cd_nelmts is NULL");
+ if (NULL == cd_values)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: cd_values is NULL");
+ if (NULL == name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: name is NULL");
+ if (NULL == filter_config)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: filter_config is NULL");
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id2: memory allocation failed");
+
+ PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id2: flags not pinned");
+ PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id2: cd_nelms not pinned");
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter_by_id2: cd_values array not pinned");
+ PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, "H5Pget_filter_by_id2: filter_config not pinned");
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long cd_nelmts_temp = *cd_nelmtsArray;
+ size_t cd_nelmts_t = (size_t) cd_nelmts_temp;
+
+ if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter,
+ (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
+ (size_t)namelen, (char *)aName, (unsigned int *)filter_configArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ aName[bs - 1] = '\0';
+
+ *cd_nelmtsArray = (jlong)cd_nelmts_t;
+ } /* end direct cast special handling */
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id2: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (filter_configArray)
+ UNPIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_valuesArray)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, (status < 0) ? JNI_ABORT : 0);
+ if (cd_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (flagsArray)
+ UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0);
+ if (aName)
+ HDfree(aName);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pmodify_filter
+ * Signature: (JIIJ[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pmodify_1filter
+ (JNIEnv *env, jclass clss, jlong plist, jint filter,
+ jint flags, jlong cd_nelmts, jintArray cd_values)
+{
+ jboolean isCopy;
+ jint *cd_valuesP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == cd_values)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pmodify_filter: cd_values is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesP, &isCopy, "H5Pmodify_filter: cd_values not pinned");
+
+ if ((status = H5Pmodify_filter((hid_t)plist, (H5Z_filter_t)filter, (const unsigned int)flags,
+ (size_t)cd_nelmts, (unsigned int *)cd_valuesP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cd_valuesP)
+ UNPIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesP, JNI_ABORT);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pmodify_1filter */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Premove_filter
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5P1remove_1filter
+ (JNIEnv *env, jclass clss, jlong obj_id, jint filter)
+{
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Premove_filter((hid_t)obj_id, (H5Z_filter_t)filter)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5P1remove_1filter */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fletcher32
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fletcher32((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fletcher32 */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_nbit
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1nbit
+ (JNIEnv *env, jclass clss, jlong plist_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_nbit((hid_t)plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1nbit */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_scaleoffset
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
+ (JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, jint scale_factor)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (scale_factor <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_scaleoffset: scale factor must be > 0");
+ if (scale_type != H5Z_SO_FLOAT_DSCALE && scale_type != H5Z_SO_FLOAT_ESCALE && scale_type != H5Z_SO_INT)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_scaleoffset: invalid scale type");
+
+ if ((retVal = H5Pset_scaleoffset((hid_t)plist_id, (H5Z_SO_scale_type_t)scale_type, scale_factor)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shuffle
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shuffle
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_shuffle((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1shuffle */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_szip
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1szip
+ (JNIEnv *env, jclass clss, jlong plist, jint options_mask, jint pixels_per_block)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_szip((hid_t)plist, (unsigned int)options_mask, (unsigned int)pixels_per_block)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1szip */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_external
+ * Signature: (JLjava/lang/String;JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1external
+ (JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, jlong size)
+{
+ const char *fileName = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Pset_external: file name not pinned");
+
+ if ((status = H5Pset_external((hid_t)plist, fileName, (off_t)offset, (hsize_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, name, fileName);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1external */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_external
+ * Signature: (JIJ[Ljava/lang/String;[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1external
+ (JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size,
+ jobjectArray name, jlongArray size)
+{
+ jboolean isCopy;
+ jstring str;
+ hsize_t s;
+ off_t o;
+ jsize arrLen;
+ jlong *theArray = NULL;
+ char *file = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (name_size < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: name_size < 0");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: size array length < 0");
+ }
+ if ((size != NULL) && (arrLen < 2))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: size input array < 2");
+
+ if (name_size > 0)
+ if (NULL == (file = (char *) HDmalloc(sizeof(char) * (size_t)name_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_external: memory allocation failed");
+
+ if ((status = H5Pget_external((hid_t) plist, (unsigned)idx, (size_t)name_size,
+ file, (off_t *)&o, (hsize_t *)&s)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL != size) {
+ PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_external: size array not pinned");
+
+ theArray[0] = o;
+ theArray[1] = (jlong)s;
+ }
+
+ if (NULL != file) {
+ file[name_size - 1] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_external: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
+ if (file)
+ HDfree(file);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1external */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_external_count
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1external_1count
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ int retVal = -1;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_external_count((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1external_1count */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual
+ * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id,
+ jstring src_file_name, jstring src_dset_name, jlong src_space_id)
+{
+ const char *fstr = NULL;
+ const char *dstr = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, src_file_name, fstr, NULL, "H5Pset_virtual: src_file_name not pinned");
+ PIN_JAVA_STRING(ENVONLY, src_dset_name, dstr, NULL, "H5Pset_virtual: src_dset_name not pinned");
+
+ if ((retVal = H5Pset_virtual((hid_t)dcpl_id, (hid_t)vspace_id, fstr, dstr, (hid_t)src_space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (dstr)
+ UNPIN_JAVA_STRING(ENVONLY, src_dset_name, dstr);
+ if (fstr)
+ UNPIN_JAVA_STRING(ENVONLY, src_file_name, fstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_count
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
+ (JNIEnv *env, jclass clss, jlong dcpl_id)
+{
+ size_t s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_virtual_count((hid_t)dcpl_id, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_dsetname
+ * Signature: (JJ)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
+{
+ ssize_t buf_size;
+ char *dname = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ /* get the length of the filename */
+ if ((buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (dname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_dsetname: memory allocation failed");
+
+ if (H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, dname, (size_t)buf_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ dname[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, dname))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_dsetname: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (dname)
+ HDfree(dname);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_filename
+ * Signature: (JJ)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
+{
+ ssize_t buf_size;
+ char *fname = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ /* get the length of the filename */
+ if ((buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (fname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_filename: memory allocation failed");
+
+ if (H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, fname, (size_t)buf_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ fname[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, fname))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_filename: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (fname)
+ HDfree(fname);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_srcspace
+ * Signature: (JJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
+{
+ hid_t space_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t)index)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)space_id;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_vspace
+ * Signature: (JJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
+ (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
+{
+ hid_t space_id = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t)index)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)space_id;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
+ (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
+{
+ const char *virtPrefix = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, prefix, virtPrefix, NULL, "H5Pset_virtual_prefix: virtual prefix not pinned");
+
+ if ((retVal = H5Pset_virtual_prefix((hid_t)dapl_id, virtPrefix)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (virtPrefix)
+ UNPIN_JAVA_STRING(ENVONLY, prefix, virtPrefix);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
+ (JNIEnv *env, jclass clss, jlong dapl_id)
+{
+ ssize_t prefix_size = -1;
+ char *pre = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ if ((prefix_size = H5Pget_virtual_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_prefix: memory allocation failed");
+
+ if (H5Pget_virtual_prefix((hid_t)dapl_id, (char *)pre, (size_t) prefix_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ pre[prefix_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_prefix: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (pre)
+ HDfree(pre);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pDCPLImp.h b/java/src/jni/h5pDCPLImp.h
new file mode 100644
index 0000000..6e5c225
--- /dev/null
+++ b/java/src/jni/h5pDCPLImp.h
@@ -0,0 +1,396 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PDCPL
+#define _Included_hdf_hdf5lib_H5_H5PDCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_layout
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1layout
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_layout
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1layout
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk
+ * Signature: (JI[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk
+(JNIEnv *, jclass, jlong, jint, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk
+ * Signature: (JI[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk
+(JNIEnv *, jclass, jlong, jint, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_chunk_opts
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_chunk_opts
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_dset_no_attrs_hint
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
+ (JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_dset_no_attrs_hint
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
+ (JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_deflate
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1deflate
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fill_value
+ * Signature: (JJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
+(JNIEnv *, jclass, jlong, jlong, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fill_value
+ * Signature: (JJ[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
+(JNIEnv *, jclass, jlong, jlong, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pfill_value_defined
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fill_time
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fill_time
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_alloc_time
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_alloc_time
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_filter
+ * Signature: (JIIJ[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1filter
+(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pall_filters_avail
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_nfilters
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1nfilters
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter
+(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter2
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter2
+(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter_by_id
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
+(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_filter_by_id2
+ * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
+(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pmodify_filter
+ * Signature: (JIIJ[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pmodify_1filter
+(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Premove_filter
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5P1remove_1filter
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fletcher32
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_nbit
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1nbit
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_scaleoffset
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shuffle
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shuffle
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_szip
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1szip
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_external
+ * Signature: (JLjava/lang/String;JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1external
+(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_external
+ * Signature: (JIJ[Ljava/lang/String;[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1external
+(JNIEnv *, jclass, jlong, jint, jlong, jobjectArray, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_external_count
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1external_1count
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual
+ * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual
+(JNIEnv *, jclass, jlong, jlong, jstring, jstring, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_count
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_dsetname
+ * Signature: (JJ)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_filename
+ * Signature: (JJ)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_srcspace
+ * Signature: (JJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_vspace
+ * Signature: (JJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_virtual_prefix
+ * Signature: (JLjava/lang/String;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
+(JNIEnv *, jclass, jlong, jstring);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_virtual_prefix
+ * Signature: (J)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PDCPL */
diff --git a/java/src/jni/h5pDXPLImp.c b/java/src/jni/h5pDXPLImp.c
new file mode 100644
index 0000000..2bdc36b
--- /dev/null
+++ b/java/src/jni/h5pDXPLImp.c
@@ -0,0 +1,502 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pDXPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_buffer
+ * Signature: (JJ[B[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1buffer
+ (JNIEnv *env, jclass clss, jlong plist, jlong size, jbyteArray tconv, jbyteArray bkg)
+{
+#ifdef notdef
+ jboolean isCopy;
+ jbyte *tconvP = NULL;
+ jbyte *bkgP = NULL;
+#endif
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+#ifndef notdef
+ UNUSED(plist);
+ UNUSED(size);
+ UNUSED(tconv);
+ UNUSED(bkg);
+#endif
+
+ H5_UNIMPLEMENTED(ENVONLY, "H5Pset_buffer: not implemented");
+
+ /* NOTE: DON'T IMPLEMENT THIS!!! */
+#ifdef notdef
+ if (NULL != tconv)
+ PIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, &isCopy, "H5Pset_buffer: tconv not pinned");
+ if (NULL != bkg)
+ PIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, &isCopy, "H5Pset_buffer: bkg not pinned");
+
+ if ((status = H5Pset_buffer((hid_t)plist, (size_t)size, tconvP, bkgP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+#endif
+
+done:
+#ifdef notdef
+ if (bkgP)
+ UNPIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, (status < 0) ? JNI_ABORT : 0);
+ if (tconvP)
+ UNPIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, (status < 0) ? JNI_ABORT : 0);
+#endif
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_buffer
+ * Signature: (J[B[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1buffer
+ (JNIEnv *env, jclass clss, jlong plist, jbyteArray tconv, jbyteArray bkg)
+{
+#ifdef notdef
+ jboolean isCopy;
+ jbyte *tconvP = NULL;
+ jbyte *bkgP = NULL;
+#endif
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+#ifndef notdef
+ UNUSED(plist);
+ UNUSED(tconv);
+ UNUSED(bkg);
+#endif
+
+ H5_UNIMPLEMENTED(ENVONLY, "H5Pget_buffer: not implemented");
+
+ /* NOTE: DON'T IMPLEMENT THIS!!! */
+#ifdef notdef
+ if (NULL == tconv)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_buffer: tconv input array is NULL");
+ if (NULL == bkg)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_buffer: bkg array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, &isCopy, "H5Pget_buffer: tconv not pinned");
+ PIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, &isCopy, "H5Pget_buffer: bkg not pinned");
+
+ if ((status = H5Pget_buffer((hid_t)plist, tconvP, bkgP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+#endif
+
+done:
+#ifdef notdef
+ if (bkgP)
+ UNPIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, (status < 0) ? JNI_ABORT : 0);
+ if (tconvP)
+ UNPIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, (status < 0) ? JNI_ABORT : 0);
+#endif
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_buffer_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ UNUSED(clss);
+
+ if (H5Pset_buffer((hid_t)plist, (size_t)size, NULL, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_buffer_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ size_t size = 0;
+
+ UNUSED(clss);
+
+ if (!(size = H5Pget_buffer((hid_t)plist, NULL, NULL)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_preserve
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1preserve
+ (JNIEnv *env, jclass clss, jlong plist, jboolean status)
+{
+ hbool_t st = JNI_FALSE;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (JNI_TRUE == status)
+ st = TRUE;
+ else if (JNI_FALSE == status)
+ st = false;
+ else
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_preserve: status not TRUE or FALSE");
+
+ if ((retVal = H5Pset_preserve((hid_t)plist, st)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1preserve */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_preserve
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1preserve
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_preserve((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1preserve */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_edc_check
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
+ (JNIEnv *env, jclass clss, jlong plist, jint check)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_edc_check((hid_t)plist, (H5Z_EDC_t)check)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1edc_1check */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_edc_check
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ H5Z_EDC_t retVal = -1;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_edc_check((hid_t)plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1edc_1check */
+
+/*
+ * TODO: H5Pset_filter_callback
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_data_transform
+ * Signature: (JLjava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
+ (JNIEnv *env, jclass clss, jlong plist_id, jstring expression)
+{
+ const char *express = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, expression, express, NULL, "H5Pset_data_transform: data transform expression not pinned");
+
+ if ((retVal = H5Pset_data_transform((hid_t)plist_id, express)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (express)
+ UNPIN_JAVA_STRING(ENVONLY, expression, express);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1data_1transform */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_data_transform
+ * Signature: (J[Ljava/lang/String;J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
+ (JNIEnv *env, jclass clss, jlong plist_id, jobjectArray expression, jlong size)
+{
+ jstring str = NULL;
+ char *express = NULL;
+ ssize_t express_size = -1;
+
+ UNUSED(clss);
+
+ if (size <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_data_transform: size <= 0");
+
+ if ((express_size = H5Pget_data_transform((hid_t)plist_id, (char *)NULL, (size_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (express = (char *) HDmalloc(sizeof(char) * (size_t)express_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: memory allocation failed");
+
+ if (H5Pget_data_transform((hid_t)plist_id, express, (size_t)express_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ express[express_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, express))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, expression, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (express)
+ HDfree(express);
+
+ return (jlong)express_size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1data_1transform */
+
+/*
+ * TODO: H5Pset_type_conv_cb
+ */
+
+/*
+ * TODO: H5Pget_type_conv_cb
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_hyper_vector_size
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong vector_size)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_hyper_vector_size((hid_t)plist, (size_t)vector_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_hyper_vector_size
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlongArray vector_size)
+{
+ jboolean isCopy;
+ size_t size;
+ jlong *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == vector_size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_hyper_vector_size: vector_size is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, vector_size, theArray, &isCopy, "H5Pget_hyper_vector_size: vector_size not pinned");
+
+ if ((retVal = H5Pget_hyper_vector_size((hid_t)plist, &size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)size;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, vector_size, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_btree_ratios
+ * Signature: (JDDD)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
+ (JNIEnv *env, jclass clss, jlong plist_id, jdouble left, jdouble middle, jdouble right)
+{
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Pset_btree_ratios((hid_t)plist_id, (double)left,(double)middle, (double)right)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_btree_ratios
+ * Signature: (J[D[D[D)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
+ (JNIEnv *env, jclass clss, jlong plist_id, jdoubleArray left,
+ jdoubleArray middle, jdoubleArray right)
+{
+ jboolean isCopy;
+ jdouble *leftP = NULL;
+ jdouble *middleP = NULL;
+ jdouble *rightP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == left)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: left input array is NULL");
+ if (NULL == middle)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: middle input array is NULL");
+ if (NULL == right)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: right input array is NULL");
+
+ PIN_DOUBLE_ARRAY(ENVONLY, left, leftP, &isCopy, "H5Pget_btree_ratios: left array not pinned");
+ PIN_DOUBLE_ARRAY(ENVONLY, middle, middleP, &isCopy, "H5Pget_btree_ratios: middle array not pinned");
+ PIN_DOUBLE_ARRAY(ENVONLY, right, rightP, &isCopy, "H5Pget_btree_ratios: right array not pinned");
+
+ if ((status = H5Pget_btree_ratios((hid_t)plist_id, (double *)leftP,
+ (double *)middleP, (double *)rightP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (rightP)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, right, rightP, (status < 0) ? JNI_ABORT : 0);
+ if (middleP)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, middle, middleP, (status < 0) ? JNI_ABORT : 0);
+ if (leftP)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, left, leftP, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios */
+
+/*
+ * TODO: H5Pset_vlen_mem_manager
+ */
+
+/*
+ * TODO: H5Pget_vlen_mem_manager
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio
+ */
+
+/*
+ * TODO: H5Pget_dxpl_mpio
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt_num
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt_ratio
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_collective_opt
+ */
+
+/*
+ * TODO: H5Pget_mpio_actual_chunk_opt_mode
+ */
+
+/*
+ * TODO: H5Pget_mpio_actual_io_mode
+ */
+
+/*
+ * TODO: H5Pget_mpio_no_collective_cause
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pDXPLImp.h b/java/src/jni/h5pDXPLImp.h
new file mode 100644
index 0000000..d62f9c5
--- /dev/null
+++ b/java/src/jni/h5pDXPLImp.h
@@ -0,0 +1,209 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PDXPL
+#define _Included_hdf_hdf5lib_H5_H5PDXPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_buffer
+ * Signature: (JJ[B[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1buffer
+(JNIEnv *, jclass, jlong, jlong, jbyteArray, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_buffer
+ * Signature: (J[B[B)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1buffer
+(JNIEnv *, jclass, jlong, jbyteArray, jbyteArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_buffer_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_buffer_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_preserve
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1preserve
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_preserve
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1preserve
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_edc_check
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_edc_check
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_filter_callback
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_data_transform
+ * Signature: (JLjava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
+(JNIEnv *, jclass, jlong, jstring);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_data_transform
+ * Signature: (J[Ljava/lang/String;J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
+(JNIEnv *, jclass, jlong, jobjectArray, jlong);
+
+/*
+ * TODO: H5Pset_type_conv_cb
+ */
+
+/*
+ * TODO: H5Pget_type_conv_cb
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_hyper_vector_size
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_hyper_vector_size
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_btree_ratios
+ * Signature: (JDDD)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
+(JNIEnv *, jclass, jlong, jdouble, jdouble, jdouble);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_btree_ratios
+ * Signature: (J[D[D[D)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
+(JNIEnv *, jclass, jlong, jdoubleArray, jdoubleArray, jdoubleArray);
+
+/*
+ * TODO: H5Pset_vlen_mem_manager
+ */
+
+/*
+ * TODO: H5Pget_vlen_mem_manager
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio
+ */
+
+/*
+ * TODO: H5Pget_dxpl_mpio
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt_num
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_chunk_opt_ratio
+ */
+
+/*
+ * TODO: H5Pset_dxpl_mpio_collective_opt
+ */
+
+/*
+ * TODO: H5Pget_mpio_actual_chunk_opt_mode
+ */
+
+/*
+ * TODO: H5Pget_mpio_actual_io_mode
+ */
+
+/*
+ * TODO: H5Pget_mpio_no_collective_cause
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PDXPL */
diff --git a/java/src/jni/h5pFAPLImp.c b/java/src/jni/h5pFAPLImp.c
new file mode 100644
index 0000000..aec6581
--- /dev/null
+++ b/java/src/jni/h5pFAPLImp.c
@@ -0,0 +1,1624 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5util.h"
+#include "h5pFAPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * TODO: H5Pset_driver
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_driver
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1driver
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_driver((hid_t) plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1driver */
+
+/*
+ * TODO: H5Pget_driver_info
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fclose_degree
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
+ (JNIEnv *env, jclass clss, jlong plist, jint fc_degree)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fclose_degree((hid_t)plist, (H5F_close_degree_t)fc_degree)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fclose_degree
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ H5F_close_degree_t degree = H5F_CLOSE_DEFAULT;
+
+ UNUSED(clss);
+
+ if (H5Pget_fclose_degree((hid_t)plist, &degree) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)degree;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_core
+ * Signature: (JJZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlong increment, jboolean backing_store)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fapl_core((hid_t)fapl_id, (size_t)increment, (hbool_t)backing_store)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_core
+ * Signature: (J[J[Z)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray increment, jbooleanArray backing_store)
+{
+ jboolean isCopy;
+ jboolean *backArray = NULL;
+ jlong *incArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == increment)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_core: increment is NULL");
+ if (NULL == backing_store)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_core: backing_store is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, increment, incArray, &isCopy, "H5Pget_fapl_core: incArray not pinned");
+ PIN_BOOL_ARRAY(ENVONLY, backing_store, backArray, &isCopy, "H5Pget_fapl_core: backArray not pinned");
+
+ {
+ /* Direct cast (size_t *)variable fails on 32-bit environment */
+ long long inc_temp = *incArray;
+ size_t inc_t = (size_t) inc_temp;
+
+ if ((status = H5Pget_fapl_core((hid_t)fapl_id, &inc_t, (hbool_t *)backArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ *incArray = (jlong)inc_t;
+ }
+
+done:
+ if (backArray)
+ UNPIN_BOOL_ARRAY(ENVONLY, backing_store, backArray, (status < 0) ? JNI_ABORT : 0);
+ if (incArray)
+ UNPIN_LONG_ARRAY(ENVONLY, increment, incArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core */
+
+/*
+ * TODO: H5Pset_core_write_tracking
+ */
+
+/*
+ * TODO: H5Pget_core_write_tracking
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_direct
+ * Signature: (JJJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlong alignment,
+ jlong block_size, jlong cbuf_size)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+#ifdef H5_HAVE_DIRECT
+ if ((retVal = H5Pset_fapl_direct((hid_t)fapl_id, (size_t)alignment, (size_t)block_size, (size_t)cbuf_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+#else
+ UNUSED(env);
+ UNUSED(fapl_id);
+ UNUSED(alignment);
+ UNUSED(block_size);
+ UNUSED(cbuf_size);
+#endif
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_direct
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray info)
+{
+#ifdef H5_HAVE_DIRECT
+ jboolean isCopy;
+ jlong *theArray = NULL;
+ size_t alignment = 0;
+ size_t block_size = 0;
+ size_t cbuf_size = 0;
+ jsize arrLen;
+#endif
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+#ifdef H5_HAVE_DIRECT
+ if (NULL == info)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_direct: info input array is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, info)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_direct: info array length < 0");
+ }
+ if (arrLen < 3)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_fapl_direct: info input array < 3");
+
+ PIN_LONG_ARRAY(ENVONLY, info, theArray, &isCopy, "H5Pget_fapl_direct: info not pinned");
+
+ if ((retVal = H5Pget_fapl_direct((hid_t)fapl_id, &alignment, &block_size, &cbuf_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)alignment;
+ theArray[1] = (jlong)block_size;
+ theArray[2] = (jlong)cbuf_size;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, info, theArray, (retVal < 0) ? JNI_ABORT : 0);
+#else
+ UNUSED(env);
+ UNUSED(fapl_id);
+ UNUSED(info);
+#endif
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_family
+ * Signature: (JJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
+ (JNIEnv *env, jclass clss, jlong plist, jlong memb_size, jlong memb_plist)
+{
+ long ms = (long)memb_size;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fapl_family((hid_t)plist, (hsize_t)ms, (hid_t)memb_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_family
+ * Signature: (J[J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
+ (JNIEnv *env, jclass clss, jlong tid, jlongArray memb_size, jlongArray memb_plist)
+{
+ jboolean isCopy;
+ hsize_t *sa = NULL;
+ size_t i;
+ jlong *sizeArray = NULL;
+ jlong *plistArray = NULL;
+ jsize rank;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == memb_size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_family: memb_size is NULL");
+ if (NULL == memb_plist)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_family: memb_plist is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, memb_size, sizeArray, &isCopy, "H5Pget_family: sizeArray not pinned");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, memb_size)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_family: memb_size array length < 0");
+ }
+
+ if (NULL == (sa = (hsize_t *) HDmalloc((size_t) rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_family: memory allocation failed");
+
+ PIN_LONG_ARRAY(ENVONLY, memb_plist, plistArray, &isCopy, "H5Pget_family: plistArray not pinned");
+
+ if ((status = H5Pget_fapl_family((hid_t)tid, sa, (hid_t *)plistArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t) rank; i++)
+ sizeArray[i] = (jlong)sa[i];
+
+done:
+ if (plistArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_plist, plistArray, (status < 0) ? JNI_ABORT : 0);
+ if (sa)
+ HDfree(sa);
+ if (sizeArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_size, sizeArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_family_offset
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
+ (JNIEnv *env, jclass clss, jlong fapl_id, jlong offset)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_family_offset((hid_t)fapl_id, (hsize_t)offset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1family_1offset */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_family_offset
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ hsize_t offset = 0;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_family_offset((hid_t)fapl_id, &offset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)offset;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1family_1offset */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_log
+ * Signature: (JLjava/lang/String;JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
+ (JNIEnv *env, jclass clss, jlong fapl_id, jstring logfile, jlong flags, jlong buf_size)
+{
+ const char *pLogfile = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, logfile, pLogfile, NULL, "H5Pset_fapl_log: log file name not pinned");
+
+ if ((retVal = H5Pset_fapl_log((hid_t)fapl_id, pLogfile, (unsigned long long)flags, (size_t)buf_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (pLogfile)
+ UNPIN_JAVA_STRING(ENVONLY, logfile, pLogfile);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log */
+
+/*
+ * TODO: H5Pset_fapl_mpio
+ */
+
+/*
+ * TODO: H5Pget_fapl_mpio
+ */
+
+/*
+ * TODO: H5Pset_fapl_mpiposix
+ */
+
+/*
+ * TODO: H5Pget_fapl_mpiposix
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_multi
+ * Signature: (J[I[J[Ljava/lang/String;[JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
+ (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map,
+ jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr, jboolean relax)
+{
+ const char * const *mName = NULL;
+ jboolean isCopy;
+ jboolean bb;
+ jobject o;
+ jstring rstring;
+ jclass Sjc;
+ size_t i;
+ jlong *thefaplArray = NULL;
+ jlong *theaddrArray = NULL;
+ jint *themapArray = NULL;
+ char *member_name[H5FD_MEM_NTYPES];
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ HDmemset(member_name, 0, H5FD_MEM_NTYPES * sizeof(char *));
+
+ if (memb_map)
+ PIN_INT_ARRAY(ENVONLY, memb_map, themapArray, &isCopy, "H5Pset_fapl_multi: memb_map not pinned");
+ if (memb_fapl)
+ PIN_LONG_ARRAY(ENVONLY, memb_fapl, thefaplArray, &isCopy, "H5Pset_fapl_multi: memb_fapl not pinned");
+ if (memb_addr)
+ PIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, &isCopy, "H5Pset_fapl_multi: memb_addr not pinned");
+
+ if (memb_name) {
+ jstring obj;
+
+ for (i = 0; i < H5FD_MEM_NTYPES; i++) {
+ const char *utf8 = NULL;
+ size_t str_len;
+
+ if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) memb_name, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ member_name[i] = NULL;
+ continue;
+ }
+
+ /*
+ * length = ENVPTR->GetStringUTFLength(ENVONLY, obj);
+ * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ */
+
+ PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5Pset_fapl_multi: string not pinned");
+
+ str_len = HDstrlen(utf8);
+
+ if (NULL == (member_name[i] = (char *) HDmalloc(str_len + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_fapl_multi: memory allocation failed");
+
+ HDstrncpy(member_name[i], utf8, str_len + 1);
+
+ UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
+ utf8 = NULL;
+
+ ENVPTR->DeleteLocalRef(ENVONLY, obj);
+ }
+
+ mName = (const char * const *)member_name;
+ }
+
+ if ((status = H5Pset_fapl_multi((hid_t)tid, (const H5FD_mem_t *)themapArray, (const hid_t *)thefaplArray,
+ mName, (const haddr_t *)theaddrArray, (hbool_t)relax)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (memb_name && mName) {
+ if (NULL == (Sjc = ENVPTR->FindClass(ENVONLY, "java/lang/String")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ for (i = 0; i < H5FD_MEM_NTYPES; i++) {
+ if (NULL == (rstring = ENVPTR->NewStringUTF(ENVONLY, member_name[i]))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_fapl_multi: out of memory - unable to construct string from UTF characters");
+ }
+
+ if (NULL == (o = ENVPTR->GetObjectArrayElement(ENVONLY, memb_name, (jsize) i))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /*
+ * If the string object was NULL, skip it.
+ */
+ ENVPTR->DeleteLocalRef(ENVONLY, rstring);
+ continue;
+ }
+
+ if (JNI_TRUE == (bb = ENVPTR->IsInstanceOf(ENVONLY, o, Sjc))) {
+ ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize) i, (jobject)rstring);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+ ENVPTR->DeleteLocalRef(ENVONLY, o);
+ ENVPTR->DeleteLocalRef(ENVONLY, rstring);
+
+ HDfree(member_name[i]);
+ member_name[i] = NULL;
+ }
+ }
+
+done:
+ h5str_array_free(member_name, H5FD_MEM_NTYPES);
+ if (theaddrArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, (status < 0) ? JNI_ABORT : 0);
+ if (thefaplArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_fapl, thefaplArray, (status < 0) ? JNI_ABORT : 0);
+ if (themapArray)
+ UNPIN_INT_ARRAY(ENVONLY, memb_map, themapArray, (status < 0) ? JNI_ABORT : 0);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_multi
+ * Signature: (J[I[J[Ljava/lang/String;[J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
+ (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map,
+ jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr)
+{
+ jboolean isCopy;
+ jstring str;
+ herr_t status = FAIL;
+ size_t i;
+ jlong *thefaplArray = NULL;
+ jlong *theaddrArray = NULL;
+ jint *themapArray = NULL;
+ char **mName = NULL;
+ int relax = 0;
+ int retVal = 0;
+
+ UNUSED(clss);
+
+ if (memb_map)
+ PIN_INT_ARRAY(ENVONLY, memb_map, themapArray, &isCopy, "H5Pget_fapl_multi: memb_map not pinned");
+ if (memb_fapl)
+ PIN_LONG_ARRAY(ENVONLY, memb_fapl, thefaplArray, &isCopy, "H5Pget_fapl_multi: memb_fapl not pinned");
+ if (memb_addr)
+ PIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, &isCopy, "H5Pget_fapl_multi: memb_addr not pinned");
+ if (memb_name)
+ if (NULL == (mName = (char **) HDcalloc(H5FD_MEM_NTYPES, sizeof(*mName))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_multi: memory allocation failed");
+
+ if ((status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t *)themapArray, (hid_t *)thefaplArray,
+ mName, (haddr_t *)theaddrArray, (hbool_t *)&relax)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (memb_name && mName) {
+ for (i = 0; i < H5FD_MEM_NTYPES; i++) {
+ if (mName[i]) {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, mName[i]))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_multi: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize) i, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, str);
+ }
+ }
+ }
+
+ retVal = (relax != 0);
+
+done:
+ h5str_array_free(mName, H5FD_MEM_NTYPES);
+ if (theaddrArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, (status < 0) ? JNI_ABORT : 0);
+ if (thefaplArray)
+ UNPIN_LONG_ARRAY(ENVONLY, memb_fapl, thefaplArray, (status < 0) ? JNI_ABORT : 0);
+ if (themapArray)
+ UNPIN_INT_ARRAY(ENVONLY, memb_map, themapArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jboolean)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi */
+
+/*
+ * TODO: H5Pset_multi_type
+ */
+
+/*
+ * TODO: H5Pget_multi_type
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_split
+ * Signature: (JLjava/lang/String;JLjava/lang/String;J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
+ (JNIEnv *env, jclass clss, jlong fapl_id, jstring metaext, jlong meta_pl_id, jstring rawext, jlong raw_pl_id)
+{
+ const char *mstr = NULL;
+ const char *rstr = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, metaext, mstr, NULL, "H5Pset_fapl_split: metaext not pinned");
+ PIN_JAVA_STRING(ENVONLY, rawext, rstr, NULL, "H5Pset_fapl_split: rawext not pinned");
+
+ if ((retVal = H5Pset_fapl_split((hid_t)fapl_id, mstr, (hid_t)meta_pl_id, rstr, (hid_t)raw_pl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (rstr)
+ UNPIN_JAVA_STRING(ENVONLY, rawext, rstr);
+ if (mstr)
+ UNPIN_JAVA_STRING(ENVONLY, metaext, mstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_sec2
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fapl_sec2((hid_t) fapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2 */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_stdio
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_fapl_stdio((hid_t) fapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_windows
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+#ifdef H5_HAVE_WINDOWS
+ if ((retVal = H5Pset_fapl_windows((hid_t) fapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+#else
+ UNUSED(env);
+ UNUSED(fapl_id);
+#endif
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows */
+
+/*
+ * TODO: H5Pset_file_image
+ */
+
+/*
+ * TODO: H5Pget_file_image
+ */
+
+/*
+ * TODO: H5Pset_file_image_callbacks
+ */
+
+/*
+ * TODO: H5Pget_file_image_callbacks
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_meta_block_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ long sz = (long)size;
+
+ UNUSED(clss);
+
+ if (H5Pset_meta_block_size((hid_t)plist, (hsize_t)sz) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_meta_block_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ hsize_t s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_meta_block_size((hid_t)plist, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size */
+
+/*
+ * TODO: H5Pset_page_buffer_size
+ */
+
+/*
+ * TODO: H5Pget_page_buffer_size
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sieve_buf_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ size_t sz = (size_t)size;
+
+ UNUSED(clss);
+
+ if (H5Pset_sieve_buf_size((hid_t)plist, (size_t)sz) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sieve_buf_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ size_t s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_sieve_buf_size((hid_t)plist, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_alignment
+ * Signature: (JJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1alignment
+ (JNIEnv *env, jclass clss, jlong plist, jlong threshold, jlong alignment)
+{
+ long thr = (long)threshold;
+ long align = (long)alignment;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_alignment((hid_t)plist, (hsize_t)thr, (hsize_t)align)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1alignment */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_alignment
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1alignment
+ (JNIEnv *env, jclass clss, jlong plist, jlongArray alignment)
+{
+ jboolean isCopy;
+ hsize_t t = 0;
+ hsize_t a = 0;
+ jsize arrLen;
+ jlong *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == alignment)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_alignment: input alignment is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, alignment)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_alignment: alignment array length < 0");
+ }
+ if (arrLen < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_alignment: alignment input array < 2");
+
+ PIN_LONG_ARRAY(ENVONLY, alignment, theArray, &isCopy, "H5Pget_alignment: input array not pinned");
+
+ if ((status = H5Pget_alignment((hid_t)plist, &t, &a)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)t;
+ theArray[1] = (jlong)a;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, alignment, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1alignment */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_cache
+ * Signature: (JIJJD)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1cache
+ (JNIEnv *env, jclass clss, jlong plist, jint mdc_nelmts, jlong rdcc_nelmts,
+ jlong rdcc_nbytes, jdouble rdcc_w0)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_cache((hid_t)plist, (int)mdc_nelmts, (size_t)rdcc_nelmts,
+ (size_t)rdcc_nbytes, (double) rdcc_w0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1cache */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_cache
+ * Signature: (J[I[J[J[D)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1cache
+ (JNIEnv *env, jclass clss, jlong plist, jintArray mdc_nelmts,
+ jlongArray rdcc_nelmts, jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
+{
+ jboolean isCopy;
+ jdouble *w0Array = NULL;
+ jlong *rdcc_nelmtsArray = NULL;
+ jlong *nbytesArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+ UNUSED(mdc_nelmts);
+
+ if (NULL != rdcc_w0)
+ PIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, &isCopy, "H5Pget_cache: rdcc_w0 array not pinned");
+ if (NULL != rdcc_nelmts)
+ PIN_LONG_ARRAY(ENVONLY, rdcc_nelmts, rdcc_nelmtsArray, &isCopy, "H5Pget_cache: rdcc_nelmts array not pinned");
+ if (NULL != rdcc_nbytes)
+ PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_cache: nbytesArray array not pinned");
+
+ {
+ /* direct cast (size_t *)variable fails on 32-bit environment */
+ long long rdcc_nelmts_temp = *rdcc_nelmtsArray;
+ long long nbytes_temp = *nbytesArray;
+ size_t rdcc_nelmts_t = (size_t) rdcc_nelmts_temp;
+ size_t nbytes_t = (size_t) nbytes_temp;
+
+ if ((status = H5Pget_cache((hid_t)plist, (int *)NULL, &rdcc_nelmts_t,
+ &nbytes_t, (double *)w0Array)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ *rdcc_nelmtsArray = (jlong)rdcc_nelmts_t;
+ *nbytesArray = (jlong)nbytes_t;
+ } /* end direct cast special */
+
+done:
+ if (nbytesArray)
+ UNPIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, (status < 0) ? JNI_ABORT : 0);
+ if (rdcc_nelmtsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, rdcc_nelmts, rdcc_nelmtsArray, (status < 0) ? JNI_ABORT : 0);
+ if (w0Array)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1cache */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_file_cache_size
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
+ (JNIEnv *env, jclass clss, jlong plist, jint size)
+{
+ unsigned sz = (unsigned)size;
+
+ UNUSED(clss);
+
+ if (H5Pset_elink_file_cache_size((hid_t)plist, (unsigned)sz) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_file_cache_size
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ unsigned s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_elink_file_cache_size((hid_t)plist, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_evict_on_close
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
+ (JNIEnv *env, jclass clss, jlong fapl_id, jboolean evict_on_close)
+{
+ hbool_t evict_on_close_val = FALSE;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ evict_on_close_val = (evict_on_close == JNI_TRUE) ? TRUE : FALSE;
+
+ if ((retVal = H5Pset_evict_on_close((hid_t)fapl_id, (hbool_t)evict_on_close_val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_evict_on_close
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ hbool_t evict_on_close_val = FALSE;
+ jboolean bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if (H5Pget_evict_on_close((hid_t)fapl_id, (hbool_t *)&evict_on_close_val) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (evict_on_close_val == TRUE) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_metadata_read_attempts
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
+ (JNIEnv *env, jclass clss, jlong plist_id, jlong attempts)
+{
+ UNUSED(clss);
+
+ if (attempts <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_metadata_read_attempts: attempts <= 0");
+
+ if (H5Pset_metadata_read_attempts((hid_t)plist_id, (unsigned)attempts) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_metadata_read_attempts
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
+ (JNIEnv *env, jclass clss, jlong plist_id)
+{
+ unsigned attempts = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_metadata_read_attempts((hid_t)plist_id, &attempts) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong) attempts;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_config
+ * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
+ (JNIEnv *env, jclass clss, jlong plist, jobject cache_config)
+{
+ H5AC_cache_config_t cacheinfo;
+ const char *str = NULL;
+ jfieldID fid;
+ jstring j_str;
+ jclass cls;
+ jint flash_incr_mode;
+ jint incr_mode;
+ jint decr_mode;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
+
+ if (NULL == (cls = ENVPTR->GetObjectClass(ENVONLY, cache_config)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "version", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.version = ENVPTR->GetIntField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "rpt_fcn_enabled", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.rpt_fcn_enabled = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "open_trace_file", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.open_trace_file = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "close_trace_file", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.close_trace_file = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "trace_file_name", "Ljava/lang/String;")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (j_str = (jstring)ENVPTR->GetObjectField(ENVONLY, cache_config, fid)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5Pset_mdc_config: cache_config not pinned");
+
+ HDstrncpy(cacheinfo.trace_file_name, str, H5AC__MAX_TRACE_FILE_NAME_LEN + 1);
+
+ UNPIN_JAVA_STRING(ENVONLY, j_str, str);
+ str = NULL;
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "evictions_enabled", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.evictions_enabled = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "set_initial_size", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.set_initial_size = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "initial_size", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.initial_size = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "min_clean_fraction", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.min_clean_fraction = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "max_size", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.max_size = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "min_size", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.min_size = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "epoch_length", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.epoch_length = (long int)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "incr_mode", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ incr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_incr_mode) */
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ cacheinfo.incr_mode = (enum H5C_cache_incr_mode) incr_mode;
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "lower_hr_threshold", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.lower_hr_threshold = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "increment", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.increment = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "apply_max_increment", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.apply_max_increment = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "max_increment", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.max_increment = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "flash_incr_mode", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ flash_incr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_flash_incr_mode) */
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ cacheinfo.flash_incr_mode = (enum H5C_cache_flash_incr_mode) flash_incr_mode;
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "flash_multiple", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.flash_multiple = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "flash_threshold", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.flash_threshold = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "decr_mode", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ decr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_decr_mode) */
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ cacheinfo.decr_mode = (enum H5C_cache_decr_mode) decr_mode;
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "upper_hr_threshold", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.upper_hr_threshold = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "decrement", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.decrement = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "apply_max_decrement", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.apply_max_decrement = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "max_decrement", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.max_decrement = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "epochs_before_eviction", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.epochs_before_eviction = ENVPTR->GetIntField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "apply_empty_reserve", "Z")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.apply_empty_reserve = ENVPTR->GetBooleanField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "empty_reserve", "D")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.empty_reserve = ENVPTR->GetDoubleField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "dirty_bytes_threshold", "J")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.dirty_bytes_threshold = (size_t)ENVPTR->GetLongField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "metadata_write_strategy", "I")))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ cacheinfo.metadata_write_strategy = ENVPTR->GetIntField(ENVONLY, cache_config, fid);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((status = H5Pset_mdc_config((hid_t)plist, &cacheinfo)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (str)
+ UNPIN_JAVA_STRING(ENVONLY, j_str, str);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_config
+ * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
+ */
+JNIEXPORT jobject JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ H5AC_cache_config_t cacheinfo;
+ jstring j_str = NULL;
+ jvalue args[30];
+ herr_t status = FAIL;
+ jobject ret_obj = NULL;
+
+ UNUSED(clss);
+
+ HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
+ cacheinfo.version = H5AC__CURR_CACHE_CONFIG_VERSION;
+
+ if ((status = H5Pget_mdc_config((hid_t)plist, &cacheinfo)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ args[0].i = cacheinfo.version;
+ args[1].z = cacheinfo.rpt_fcn_enabled;
+ args[2].z = cacheinfo.open_trace_file;
+ args[3].z = cacheinfo.close_trace_file;
+
+ if (NULL != cacheinfo.trace_file_name) {
+ if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, cacheinfo.trace_file_name))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_config: out of memory - unable to construct string from UTF characters");
+ }
+ }
+
+ args[4].l = j_str;
+ args[5].z = cacheinfo.evictions_enabled;
+ args[6].z = cacheinfo.set_initial_size;
+ args[7].j = (jlong)cacheinfo.initial_size;
+ args[8].d = cacheinfo.min_clean_fraction;
+ args[9].j = (jlong)cacheinfo.max_size;
+ args[10].j = (jlong)cacheinfo.min_size;
+ args[11].j = cacheinfo.epoch_length;
+ args[12].i = cacheinfo.incr_mode;
+ args[13].d = cacheinfo.lower_hr_threshold;
+ args[14].d = cacheinfo.increment;
+ args[15].z = cacheinfo.apply_max_increment;
+ args[16].j = (jlong)cacheinfo.max_increment;
+ args[17].i = cacheinfo.flash_incr_mode;
+ args[18].d = cacheinfo.flash_multiple;
+ args[19].d = cacheinfo.flash_threshold;
+ args[20].i = cacheinfo.decr_mode;
+ args[21].d = cacheinfo.upper_hr_threshold;
+ args[22].d = cacheinfo.decrement;
+ args[23].z = cacheinfo.apply_max_decrement;
+ args[24].j = (jlong)cacheinfo.max_decrement;
+ args[25].i = cacheinfo.epochs_before_eviction;
+ args[26].z = cacheinfo.apply_empty_reserve;
+ args[27].d = cacheinfo.empty_reserve;
+ args[28].j = (jlong)cacheinfo.dirty_bytes_threshold;
+ args[29].i = cacheinfo.metadata_write_strategy;
+
+ CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5AC_cache_config_t", "(IZZZLjava/lang/String;ZZJDJJJIDDZJIDDIDDZJIZDJI)V", args, ret_obj);
+
+done:
+ return ret_obj;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config */
+
+/*
+ * TODO: H5Pset_mdc_image_config
+ */
+
+/*
+ * TODO: H5Pget_mdc_image_config
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_log_options
+ * Signature: (JZLjava/lang/String;Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
+ (JNIEnv *env, jclass clss, jlong fapl_id, jboolean is_enabled, jstring location, jboolean start_on_access)
+{
+ const char *locStr = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, location, locStr, NULL, "H5Pset_mdc_log_options: location string not pinned");
+
+ if ((retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, locStr, (hbool_t)start_on_access)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (locStr)
+ UNPIN_JAVA_STRING(ENVONLY, location, locStr);
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_log_options
+ * Signature: (J[Z)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
+ (JNIEnv *env, jclass clss, jlong fapl_id, jbooleanArray mdc_log_options)
+{
+ jboolean isCopy;
+ jboolean *mdc_log_options_ptr = NULL;
+ hbool_t is_enabled;
+ hbool_t start_on_access;
+ ssize_t status = -1;
+ size_t location_size;
+ jsize arrLen;
+ char *lname = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == mdc_log_options)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: mdc_log_options is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, mdc_log_options)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: mdc_log_options array length < 0");
+ }
+ if (arrLen < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: length of mdc_log_options < 2");
+
+ PIN_BOOL_ARRAY(ENVONLY, mdc_log_options, mdc_log_options_ptr, &isCopy, "H5Pget_mdc_log_options: mdc_log_options array not pinned");
+
+ /* get the length of the filename */
+ if (H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, NULL, &location_size, &start_on_access) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!location_size)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: location_size is 0");
+
+ location_size++; /* add extra space for the null terminator */
+ if (NULL == (lname = (char *) HDmalloc(sizeof(char) * location_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_log_options: memory allocation failed");
+
+ if ((status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, &start_on_access)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ lname[location_size - 1] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, lname))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_log_options: out of memory - unable to construct string from UTF characters");
+ }
+
+ mdc_log_options_ptr[0] = (jboolean)is_enabled;
+ mdc_log_options_ptr[1] = (jboolean)start_on_access;
+
+done:
+ if (lname)
+ HDfree(lname);
+ if (mdc_log_options_ptr)
+ UNPIN_BOOL_ARRAY(ENVONLY, mdc_log_options, mdc_log_options_ptr, (status < 0) ? JNI_ABORT : 0);
+
+ return (jstring)str;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options */
+
+/*
+ * TODO: H5Pset_all_coll_metadata_ops
+ */
+
+/*
+ * TODO: H5Pget_all_coll_metadata_ops
+ */
+
+/*
+ * TODO: H5Pset_coll_metadata_write
+ */
+
+/*
+ * TODO: H5Pget_coll_metadata_write
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_gc_references
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
+ (JNIEnv *env, jclass clss, jlong fapl_id, jboolean gc_ref)
+{
+ unsigned gc_ref_val = 0;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ gc_ref_val = (gc_ref == JNI_TRUE) ? 1 : 0;
+
+ if ((retVal = H5Pset_gc_references((hid_t)fapl_id, gc_ref_val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1gc_1references */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_gc_references
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
+ (JNIEnv *env, jclass clss, jlong fapl_id)
+{
+ unsigned gc_ref_val = 0;
+ jboolean bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if (H5Pget_gc_references((hid_t)fapl_id, (unsigned *)&gc_ref_val) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (gc_ref_val == 1) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return bval;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1gc_1references */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_small_data_block_size
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ long sz = (long)size;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_small_data_block_size((hid_t)plist, (hsize_t)sz)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_small_data_block_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
+ (JNIEnv *env, jclass clss, jlong plist)
+{
+ hsize_t s = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_small_data_block_size((hid_t)plist, &s) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)s;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_libver_bounds
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
+ (JNIEnv *env, jclass clss, jlong fapl_id, jint low, jint high)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_libver_bounds((hid_t)fapl_id, (H5F_libver_t)low, (H5F_libver_t)high)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_libver_bounds
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
+ (JNIEnv *env, jclass clss, jlong fapl_id, jintArray libver)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == libver)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_libver_bounds: libversion bounds is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, libver, theArray, &isCopy, "H5Pget_libver_bounds: input not pinned");
+
+ if ((retVal = H5Pget_libver_bounds((hid_t)fapl_id, (H5F_libver_t *)&(theArray[0]), (H5F_libver_t *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, libver, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds */
+
+/*
+ * TODO: H5Pset_object_flush_cb
+ */
+
+/*
+ * TODO: H5Pget_object_flush_cb
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pFAPLImp.h b/java/src/jni/h5pFAPLImp.h
new file mode 100644
index 0000000..28b1d95
--- /dev/null
+++ b/java/src/jni/h5pFAPLImp.h
@@ -0,0 +1,501 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PFAPL
+#define _Included_hdf_hdf5lib_H5_H5PFAPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * TODO: H5Pset_driver
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_driver
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1driver
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pget_driver_info
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fclose_degree
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fclose_degree
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_core
+ * Signature: (JJZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
+(JNIEnv *, jclass, jlong, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_core
+ * Signature: (J[J[Z)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
+(JNIEnv *, jclass, jlong, jlongArray, jbooleanArray);
+
+/*
+ * TODO: H5Pset_core_write_tracking
+ */
+
+/*
+ * TODO: H5Pget_core_write_tracking
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_direct
+ * Signature: (JJJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
+(JNIEnv *, jclass, jlong, jlong, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_direct
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_family
+ * Signature: (JJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
+(JNIEnv *, jclass, jlong, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_family
+ * Signature: (J[J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
+(JNIEnv *, jclass, jlong, jlongArray, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_family_offset
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_family_offset
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_log
+ * Signature: (JLjava/lang/String;JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
+(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
+
+/*
+ * TODO: H5Pset_fapl_mpio
+ */
+
+/*
+ * TODO: H5Pget_fapl_mpio
+ */
+
+/*
+ * TODO: H5Pset_fapl_mpiposix
+ */
+
+/*
+ * TODO: H5Pget_fapl_mpiposix
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_multi
+ * Signature: (J[I[J[Ljava/lang/String;[JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
+(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_fapl_multi
+ * Signature: (J[I[J[Ljava/lang/String;[J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
+(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray);
+
+/*
+ * TODO: H5Pset_multi_type
+ */
+
+/*
+ * TODO: H5Pget_multi_type
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_split
+ * Signature: (JLjava/lang/String;JLjava/lang/String;J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
+(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_sec2
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_stdio
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_fapl_windows
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_file_image
+ */
+
+/*
+ * TODO: H5Pget_file_image
+ */
+
+/*
+ * TODO: H5Pset_file_image_callbacks
+ */
+
+/*
+ * TODO: H5Pget_file_image_callbacks
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_meta_block_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_meta_block_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_page_buffer_size
+ */
+
+/*
+ * TODO: H5Pget_page_buffer_size
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sieve_buf_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sieve_buf_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_alignment
+ * Signature: (JJJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1alignment
+(JNIEnv *, jclass, jlong, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_alignment
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1alignment
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_cache
+ * Signature: (JIJJD)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1cache
+(JNIEnv *, jclass, jlong, jint, jlong, jlong, jdouble);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_cache
+ * Signature: (J[I[J[J[D)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1cache
+(JNIEnv *, jclass, jlong, jintArray, jlongArray, jlongArray, jdoubleArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_file_cache_size
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_file_cache_size
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_evict_on_close
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_evict_on_close
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_metadata_read_attempts
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_metadata_read_attempts
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_config
+ * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
+(JNIEnv *, jclass, jlong, jobject);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_config
+ * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
+ */
+JNIEXPORT jobject JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_mdc_image_config
+ */
+
+/*
+ * TODO: H5Pget_mdc_image_config
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_log_options
+ * Signature: (JZLjava/lang/String;Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
+(JNIEnv *, jclass, jlong, jboolean, jstring, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_log_options
+ * Signature: (J[Z)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
+(JNIEnv *, jclass, jlong, jbooleanArray);
+
+/*
+ * TODO: H5Pset_all_coll_metadata_ops
+ */
+
+/*
+ * TODO: H5Pget_all_coll_metadata_ops
+ */
+
+/*
+ * TODO: H5Pset_coll_metadata_write
+ */
+
+/*
+ * TODO: H5Pget_coll_metadata_write
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_gc_references
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_gc_references
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_small_data_block_size
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_small_data_block_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_libver_bounds
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_libver_bounds
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * TODO: H5Pset_object_flush_cb
+ */
+
+/*
+ * TODO: H5Pget_object_flush_cb
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PFAPL */
diff --git a/java/src/jni/h5pFCPLImp.c b/java/src/jni/h5pFCPLImp.c
new file mode 100644
index 0000000..9c82ba6
--- /dev/null
+++ b/java/src/jni/h5pFCPLImp.c
@@ -0,0 +1,572 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pFCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_userblock
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1userblock
+ (JNIEnv *env, jclass clss, jlong plist, jlong size)
+{
+ long sz = (long) size;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_userblock((hid_t)plist, (hsize_t)sz)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1userblock */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_userblock
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1userblock
+ (JNIEnv *env, jclass clss, jlong plist, jlongArray size)
+{
+ jboolean isCopy;
+ hsize_t s;
+ jlong *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_userblock: size is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_userblock: size not pinned");
+
+ if ((status = H5Pget_userblock((hid_t)plist, &s)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)s;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1userblock */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sizes
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sizes
+ (JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_sizes((hid_t)plist, (size_t)sizeof_addr, (size_t)sizeof_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1sizes */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sizes
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sizes
+ (JNIEnv *env, jclass clss, jlong plist, jlongArray size)
+{
+ jboolean isCopy;
+ jlong *theArray = NULL;
+ jsize arrLen;
+ size_t ss;
+ size_t sa;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size array length < 0");
+ }
+ if (arrLen < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size input array < 2 elements");
+
+ PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sizes: size not pinned");
+
+ if ((status = H5Pget_sizes((hid_t)plist, &sa, &ss)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ theArray[0] = (jlong)sa;
+ theArray[1] = (jlong)ss;
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1sizes */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sym_k
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
+ (JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_sym_k((hid_t)plist, (unsigned)ik, (unsigned)lk)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1sym_1k */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sym_k
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
+ (JNIEnv *env, jclass clss, jlong plist, jintArray size)
+{
+ jboolean isCopy;
+ jsize arrLen;
+ jint *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size array length < 0");
+ }
+ if (arrLen < 2)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size < 2 elements");
+
+ PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sym_k: size not pinned");
+
+ if ((status = H5Pget_sym_k((hid_t)plist, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1sym_1k */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_istore_k
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
+ (JNIEnv *env, jclass clss, jlong plist, jint ik)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_istore_k((hid_t)plist, (unsigned)ik)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1istore_1k */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_istore_k
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
+ (JNIEnv *env, jclass clss, jlong plist, jintArray ik)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == ik)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_store_k: ik is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, ik, theArray, &isCopy, "H5Pget_store_k: size not pinned");
+
+ if ((status = H5Pget_istore_k((hid_t)plist, (unsigned *)&(theArray[0]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, ik, theArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)status;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1istore_1k */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_file_space_page_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size)
+{
+ UNUSED(clss);
+
+ if (H5Pset_file_space_page_size((hid_t)fcpl_id, (hsize_t)fsp_size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_page_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
+ (JNIEnv *env, jclass clss, jlong fcpl_id)
+{
+ hsize_t fsp_size = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_file_space_page_size((hid_t)fcpl_id, &fsp_size) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)fsp_size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_file_space_strategy
+ * Signature: (JIZJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, jboolean persist, jlong threshold)
+{
+ UNUSED(clss);
+
+ if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist, (hsize_t)threshold) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_file_space_strategy */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy
+ * Signature: (J[Z[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jbooleanArray persist, jlongArray threshold)
+{
+ H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */
+ jboolean isCopy;
+ jboolean *persistArray = NULL;
+ jlong *thresholdArray = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (persist)
+ PIN_BOOL_ARRAY(ENVONLY, persist, persistArray, &isCopy, "H5Pget_file_space: persist not pinned");
+ if (threshold)
+ PIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, &isCopy, "H5Pget_file_space: threshold not pinned");
+
+ if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t *)persistArray, (hsize_t *)thresholdArray)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (thresholdArray)
+ UNPIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, (status < 0) ? JNI_ABORT : 0);
+ if (persistArray)
+ UNPIN_BOOL_ARRAY(ENVONLY, persist, persistArray, (status < 0) ? JNI_ABORT : 0);
+
+ return (jint)thestrategy;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy_persist
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
+ (JNIEnv *env, jclass clss, jlong fcpl_id)
+{
+ hbool_t persist = FALSE;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, &persist, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jboolean)persist;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy_threshold
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
+ (JNIEnv *env, jclass clss, jlong fcpl_id)
+{
+ hsize_t threshold = 0;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, NULL, &threshold)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)threshold;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1threshold */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_nindexes
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
+ (JNIEnv *env, jclass clss, jlong plist_id, jint nindexes)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (nindexes > H5O_SHMESG_MAX_NINDEXES)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES");
+
+ if ((retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_nindexes
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
+ (JNIEnv *env, jclass clss, jlong fcpl_id)
+{
+ unsigned nindexes;
+
+ UNUSED(clss);
+
+ if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)nindexes;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_index
+ * Signature: (JIII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num,
+ jint mesg_type_flags, jint min_mesg_size)
+{
+ unsigned nindexes; /* Number of SOHM indexes */
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ /* Check arguments */
+ if ((unsigned) mesg_type_flags > H5O_SHMESG_ALL_FLAG)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags");
+
+ /* Read the current number of indexes */
+ if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Range check */
+ if ((unsigned) index_num >= nindexes)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: index_num is too large; no such index");
+
+ if ((retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned) mesg_type_flags, (unsigned) min_mesg_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_index
+ * Signature: (JI[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jintArray mesg_info)
+{
+ jboolean isCopy;
+ unsigned nindexes; /* Number of SOHM indexes */
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == mesg_info)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: mesg_info is NULL");
+
+ /* Read the current number of indexes */
+ if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Range check */
+ if ((unsigned) index_num >= nindexes)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: index_num is too large; no such index");
+
+ PIN_INT_ARRAY(ENVONLY, mesg_info, theArray, &isCopy, "H5Pget_shared_mesg_index: input not pinned");
+
+ if ((retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, mesg_info, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_phase_change
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jint max_list, jint min_btree)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ /* Check that values are sensible. The min_btree value must be no greater
+ * than the max list plus one.
+ *
+ * Range check to make certain they will fit into encoded form.
+ */
+
+ if (max_list + 1 < min_btree)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value");
+ if (max_list > H5O_SHMESG_MAX_LIST_SIZE)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE");
+ if (min_btree > H5O_SHMESG_MAX_LIST_SIZE)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE");
+
+ if ((retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
+ (JNIEnv *env, jclass clss, jlong fcpl_id, jintArray size)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == size)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_phase_change: size is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_shared_mesg_phase_change: input not pinned");
+
+ if ((retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, size, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pFCPLImp.h b/java/src/jni/h5pFCPLImp.h
new file mode 100644
index 0000000..57fcae8
--- /dev/null
+++ b/java/src/jni/h5pFCPLImp.h
@@ -0,0 +1,207 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PFCPL
+#define _Included_hdf_hdf5lib_H5_H5PFCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_userblock
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1userblock
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_userblock
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1userblock
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sizes
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sizes
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sizes
+ * Signature: (J[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sizes
+(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_sym_k
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_sym_k
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_istore_k
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_istore_k
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_file_space_page_size
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_page_size
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_file_space_strategy
+ * Signature: (JIZJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
+(JNIEnv *, jclass, jlong, jint, jboolean, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy
+ * Signature: (J[Z[J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
+(JNIEnv *, jclass, jlong, jbooleanArray, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy_persist
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_file_space_strategy_threshold
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_nindexes
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_nindexes
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_index
+ * Signature: (JIII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
+(JNIEnv *, jclass, jlong, jint, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_index
+ * Signature: (JI[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
+(JNIEnv *, jclass, jlong, jint, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_shared_mesg_phase_change
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_shared_mesg_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
+(JNIEnv *, jclass, jlong, jintArray);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PFCPL */
diff --git a/java/src/jni/h5pGAPLImp.c b/java/src/jni/h5pGAPLImp.c
new file mode 100644
index 0000000..9540387
--- /dev/null
+++ b/java/src/jni/h5pGAPLImp.c
@@ -0,0 +1,36 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pGAPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pGAPLImp.h b/java/src/jni/h5pGAPLImp.h
new file mode 100644
index 0000000..73ad4a8
--- /dev/null
+++ b/java/src/jni/h5pGAPLImp.h
@@ -0,0 +1,27 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PGAPL
+#define _Included_hdf_hdf5lib_H5_H5PGAPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PGAPL */
diff --git a/java/src/jni/h5pGCPLImp.c b/java/src/jni/h5pGCPLImp.c
new file mode 100644
index 0000000..2ba1c7d
--- /dev/null
+++ b/java/src/jni/h5pGCPLImp.c
@@ -0,0 +1,227 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pGCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_local_heap_size_hint
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jlong size_hint)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_local_heap_size_hint((hid_t)gcpl_id, (size_t)size_hint)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_local_heap_size_hint
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
+ (JNIEnv *env, jclass clss, jlong gcpl_id)
+{
+ size_t size_hint = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_local_heap_size_hint((hid_t)gcpl_id, &size_hint) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)size_hint;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_link_creation_order
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jint crt_order_flags)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_link_creation_order((hid_t)gcpl_id, (unsigned)crt_order_flags)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_link_creation_order
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
+ (JNIEnv *env, jclass clss, jlong gcpl_id)
+{
+ unsigned crt_order_flags;
+
+ UNUSED(clss);
+
+ if (H5Pget_link_creation_order((hid_t)gcpl_id, &crt_order_flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)crt_order_flags;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_est_link_info
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jint est_num_entries, jint est_name_len)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ /* Range check values */
+ if ((est_num_entries > 65535) || (est_name_len > 65535))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_est_link_info: est. name length or number of entries must be < 65536");
+
+ if ((retVal = H5Pset_est_link_info((hid_t)gcpl_id, (unsigned)est_num_entries, (unsigned)est_name_len)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_est_link_info
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray link_info)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == link_info)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_est_link_info: link_info is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, link_info, theArray, &isCopy, "H5Pget_est_link_info: input not pinned");
+
+ if ((retVal = H5Pget_est_link_info((hid_t)gcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, link_info, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_link_phase_change
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jint max_compact, jint min_dense)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (max_compact < min_dense)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: max compact value must be >= min dense value");
+ if (max_compact > 65535)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: max compact value must be < 65536");
+ if (min_dense > 65535)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: min dense value must be < 65536");
+
+ if ((retVal = H5Pset_link_phase_change((hid_t)gcpl_id, (unsigned)max_compact, (unsigned)min_dense)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_link_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
+ (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray links)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == links)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_link_phase_change: links is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, links, theArray, &isCopy, "H5Pget_link_phase_change: input not pinned");
+
+ if ((retVal = H5Pget_link_phase_change((hid_t)gcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, links, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pGCPLImp.h b/java/src/jni/h5pGCPLImp.h
new file mode 100644
index 0000000..9c32063
--- /dev/null
+++ b/java/src/jni/h5pGCPLImp.h
@@ -0,0 +1,99 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PGCPL
+#define _Included_hdf_hdf5lib_H5_H5PGCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_local_heap_size_hint
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_local_heap_size_hint
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_link_creation_order
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_link_creation_order
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_est_link_info
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_est_link_info
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_link_phase_change
+ * Signature: (JII)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_link_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
+(JNIEnv *, jclass, jlong, jintArray);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PGCPL */
diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c
index ac21d1d..bed23c9 100644
--- a/java/src/jni/h5pImp.c
+++ b/java/src/jni/h5pImp.c
@@ -26,7 +26,11 @@ extern "C" {
#include "h5util.h"
#include "h5pImp.h"
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
extern JavaVM *jvm;
+
extern jobject copy_callback;
extern jobject close_callback;
extern jobject create_callback;
@@ -44,17 +48,16 @@ typedef struct _cb_wrapper {
/* Local Prototypes */
/********************/
-static herr_t H5P_cls_create_func_cb(hid_t prop_id, void *create_data);
-static herr_t H5P_cls_copy_func_cb(hid_t new_prop_id, hid_t old_prop_id, void *copy_data);
-static herr_t H5P_cls_close_func_cb(hid_t prop_id, void *close_data);
-
-static herr_t H5P_prp_create_func_cb(const char *name, size_t size, void *value);
-static herr_t H5P_prp_copy_func_cb(const char *name, size_t size, void *value);
-static herr_t H5P_prp_close_func_cb(const char *name, size_t size, void *value);
-static int H5P_prp_compare_func_cb(void *value1, void *value2, size_t size);
-static herr_t H5P_prp_get_func_cb(hid_t prop_id, const char *name, size_t size, void *value);
-static herr_t H5P_prp_set_func_cb(hid_t prop_id, const char *name, size_t size, void *value);
-static herr_t H5P_prp_delete_func_cb(hid_t prop_id, const char *name, size_t size, void *value);
+static herr_t H5P_cls_create_cb(hid_t prop_id, void *create_data);
+static herr_t H5P_cls_copy_cb(hid_t new_prop_id, hid_t old_prop_id, void *copy_data);
+static herr_t H5P_cls_close_cb(hid_t prop_id, void *close_data);
+static herr_t H5P_prp_create_cb(const char *name, size_t size, void *value);
+static herr_t H5P_prp_copy_cb(const char *name, size_t size, void *value);
+static herr_t H5P_prp_close_cb(const char *name, size_t size, void *value);
+static int H5P_prp_compare_cb(void *value1, void *value2, size_t size);
+static herr_t H5P_prp_get_cb(hid_t prop_id, const char *name, size_t size, void *value);
+static herr_t H5P_prp_set_cb(hid_t prop_id, const char *name, size_t size, void *value);
+static herr_t H5P_prp_delete_cb(hid_t prop_id, const char *name, size_t size, void *value);
static herr_t H5P_iterate_cb(hid_t prop_id, const char *name, void *cb_data);
@@ -67,37 +70,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Pcreate
(JNIEnv *env, jclass clss, jlong type)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Pcreate((hid_t)type);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Pcreate((hid_t) type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Pcreate */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pclose
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5__1H5Pclose
- (JNIEnv *env, jclass clss, jlong plist)
-{
- herr_t retVal = 0;
-
- if (plist > 0)
- retVal = H5Pclose((hid_t)plist);
-
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5__1H5Pclose */
-
-/*
- * Class: hdf_hdf5lib_H5
* Method: H5Pget_class
* Signature: (J)J
*/
@@ -105,12 +90,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1class
(JNIEnv *env, jclass clss, jlong plist)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Pget_class((hid_t) plist);
- if (retVal == H5P_ROOT)
- h5libraryError(env);
+ if ((retVal = H5Pget_class((hid_t) plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ /*
+ * if (retVal == H5P_ROOT)
+ * H5_LIBRARY_ERROR(ENVONLY);
+ */
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1class */
@@ -123,2027 +115,246 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Pcopy
(JNIEnv *env, jclass clss, jlong plist)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Pcopy((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Pcopy((hid_t) plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Pcopy */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_userblock
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1userblock
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- herr_t retVal = -1;
- long sz = (long)size;
-
- retVal = H5Pset_userblock((hid_t)plist, (hsize_t)sz);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1userblock */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_userblock
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1userblock
- (JNIEnv *env, jclass clss, jlong plist, jlongArray size)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- hsize_t s;
-
- if (size == NULL) {
- h5nullArgument(env, "H5Pget_userblock: size is NULL");
- } /* end if */
- else {
- theArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_userblock: size not pinned");
- } /* end if */
- else {
- status = H5Pget_userblock((hid_t)plist, &s);
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)s;
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1userblock */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sizes
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sizes
- (JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_sizes((hid_t)plist, (size_t)sizeof_addr, (size_t)sizeof_size);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1sizes */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sizes
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sizes
- (JNIEnv *env, jclass clss, jlong plist, jlongArray size)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- size_t ss;
- size_t sa;
-
- if (size == NULL) {
- h5nullArgument(env, "H5Pget_sizes: size is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR size) < 2) {
- h5badArgument(env, "H5Pget_sizes: size input array < 2 elements");
- }
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_sizes: size not pinned");
- } /* end if */
- else {
- status = H5Pget_sizes((hid_t)plist, &sa, &ss);
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)sa;
- theArray[1] = (jlong)ss;
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1sizes */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sym_k
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
- (JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_sym_k((hid_t)plist, (unsigned)ik, (unsigned)lk);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1sym_1k */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sym_k
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
- (JNIEnv *env, jclass clss, jlong plist, jintArray size)
-{
- herr_t status = -1;
- jint *theArray;
- jboolean isCopy;
-
- if (size == NULL) {
- h5nullArgument(env, "H5Pget_sym_k: size is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR size) < 2) {
- h5badArgument(env, "H5Pget_sym_k: size < 2 elements");
- } /* end else if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_sym_k: size not pinned");
- } /* end if */
- else {
- status = H5Pget_sym_k((hid_t)plist, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]));
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR size, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR size, theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1sym_1k */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_istore_k
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
- (JNIEnv *env, jclass clss, jlong plist, jint ik)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_istore_k((hid_t)plist, (unsigned)ik);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1istore_1k */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_istore_k
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
- (JNIEnv *env, jclass clss, jlong plist, jintArray ik)
-{
- herr_t status = -1;
- jint *theArray;
- jboolean isCopy;
-
- if (ik == NULL) {
- h5nullArgument(env, "H5Pget_store_k: ik is NULL");
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR ik, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_store_k: size not pinned");
- } /* end if */
- else {
- status = H5Pget_istore_k((hid_t)plist, (unsigned *)&(theArray[0]));
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR ik, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR ik, theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1istore_1k */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_layout
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1layout
- (JNIEnv *env, jclass clss, jlong plist, jint layout)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_layout((hid_t)plist, (H5D_layout_t)layout);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1layout */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_layout
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1layout
- (JNIEnv *env, jclass clss, jlong plist)
-{
- H5D_layout_t retVal = H5D_LAYOUT_ERROR;
-
- retVal = H5Pget_layout((hid_t)plist);
- if (retVal == H5D_LAYOUT_ERROR)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1layout */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk
- * Signature: (JI[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk
- (JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim)
-{
- herr_t status = -1;
- jbyte *theArray;
- jboolean isCopy;
- hsize_t *da;
- hsize_t *lp;
- jlong *jlp;
- size_t i;
- size_t rank;
-
- if (dim == NULL) {
- h5nullArgument(env, "H5Pset_chunk: dim array is NULL");
- } /* end if */
- else {
- i = (size_t)ENVPTR->GetArrayLength(ENVPAR dim);
- rank = i / sizeof(jlong);
- if (rank < ndims) {
- h5badArgument(env, "H5Pset_chunk: dims array < ndims");
- } /* end if */
- else {
- theArray = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR dim, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pset_chunk: dim array not pinned");
- } /* end if */
- else {
- da = lp = (hsize_t *)HDmalloc(rank * sizeof(hsize_t));
- if (da == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR dim, theArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pset_chunk: dims not converted to hsize_t");
- } /* end if */
- else {
- jlp = (jlong *)theArray;
- for (i = 0; i < rank; i++) {
- *lp = (hsize_t)*jlp;
- lp++;
- jlp++;
- } /* end if */
-
- status = H5Pset_chunk((hid_t)plist, (int)ndims, da);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR dim, theArray, JNI_ABORT);
- HDfree(da);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk
- * Signature: (JI[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk
- (JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- hsize_t *da;
- int i;
-
- if (dims == NULL) {
- h5nullArgument(env, "H5Pget_chunk: dims is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR dims) < max_ndims) {
- h5badArgument(env, "H5Pget_chunk: dims array < max_ndims");
- } /* end else if */
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_chunk: input dims not pinned");
- } /* end if */
- else {
- da = (hsize_t *)HDmalloc((size_t)max_ndims * sizeof(hsize_t));
- if (da == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_chunk: dims not converted to hsize_t");
- } /* end if */
- else {
- status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da);
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, JNI_ABORT);
- HDfree (da);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < max_ndims; i++) {
- theArray[i] = (jlong)da[i];
- }
- HDfree (da);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_alignment
- * Signature: (JJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1alignment
- (JNIEnv *env, jclass clss, jlong plist, jlong threshold, jlong alignment)
-{
- herr_t retVal = -1;
- long thr = (long)threshold;
- long align = (long)alignment;
-
- retVal = H5Pset_alignment((hid_t)plist, (hsize_t)thr, (hsize_t)align);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1alignment */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_alignment
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1alignment
- (JNIEnv *env, jclass clss, jlong plist, jlongArray alignment)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- hsize_t t;
- hsize_t a;
-
- if (alignment == NULL) {
- h5nullArgument(env, "H5Pget_alignment: input alignment is NULL");
- } /* end if */
- else {
- if (ENVPTR->GetArrayLength(ENVPAR alignment) < 2) {
- h5badArgument(env, "H5Pget_alignment: alignment input array < 2");
- } /* end if */
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR alignment, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_alignment: input array not pinned");
- } /* end if */
- else {
- status = H5Pget_alignment((hid_t)plist, &t, &a);
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR alignment, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)t;
- theArray[1] = (jlong)a;
- ENVPTR->ReleaseLongArrayElements(ENVPAR alignment, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1alignment */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_external
- * Signature: (JLjava/lang/String;JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1external
- (JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, jlong size)
-{
- herr_t status = -1;
- const char *fileName;
- off_t off;
- hsize_t sz;
- hid_t plid;
-
- plid = (hid_t)plist;
- off = (off_t)offset;
- sz = (hsize_t)size;
-
- PIN_JAVA_STRING(name, fileName);
- if (fileName != NULL) {
- status = H5Pset_external(plid, fileName, off, sz);
-
- UNPIN_JAVA_STRING(name, fileName);
-
- if (status < 0)
- h5libraryError(env);
- }
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1external */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_external_count
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1external_1count
- (JNIEnv *env, jclass clss, jlong plist)
-{
- int retVal = -1;
-
- retVal = H5Pget_external_count((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1external_1count */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_external
- * Signature: (JIJ[Ljava/lang/String;[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1external
- (JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size,
- jobjectArray name, jlongArray size)
-{
- herr_t status = -1;
- jlong *theArray;
- jboolean isCopy;
- char *file = NULL;
- jstring str;
- off_t o;
- hsize_t s;
-
- if (name_size < 0) {
- h5badArgument(env, "H5Pget_external: name_size < 0");
- } /* end if */
- else if ((size != NULL) && (ENVPTR->GetArrayLength(ENVPAR size) < 2)) {
- h5badArgument(env, "H5Pget_external: size input array < 2");
- } /* end else if */
- else {
- if (name_size > 0) {
- file = (char *)HDmalloc(sizeof(char)*(size_t)name_size);
- } /* end else */
-
- status = H5Pget_external((hid_t) plist, (unsigned)idx, (size_t)name_size,
- file, (off_t *)&o, (hsize_t *)&s);
- if (status < 0) {
- HDfree(file);
- h5libraryError(env);
- } /* end if */
- else {
- if (size != NULL) {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError( env, "H5Pget_external: size array not pinned");
- } /* end if */
- else {
- theArray[0] = o;
- theArray[1] = (jlong)s;
- ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0);
- }
- } /* end if */
-
- if (file != NULL) {
- /* NewStringUTF may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR file);
- if (str == NULL) {
- HDfree(file);
- h5JNIFatalError(env, "H5Pget_external: return array not created");
- } /* end if */
- else {
- /* SetObjectArrayElement may raise exceptions */
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str);
- HDfree(file);
- } /* end else */
- } /* end if */
- } /* end else */
- }
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1external */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fill_value
- * Signature: (JJ[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
- (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value)
-{
- jint status = -1;
- jbyte *byteP = NULL;
- jboolean isCopy;
-
- if (value != NULL) {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Pget_fill_value: value array not pinned");
- } /* end if */
- else {
- status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
- }
- } /* end if */
- else {
- status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP);
- }
-
- if (status < 0)
- h5libraryError(env);
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1value */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fill_value
- * Signature: (JJ[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
- (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value)
-{
- jint status = -1;
- jbyte *byteP;
- jboolean isCopy;
-
- if (value == NULL) {
- h5badArgument(env, "H5Pget_fill_value: value is NULL");
- } /* end if */
- else {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Pget_fill_value: value array not pinned");
- } /* end if */
- else {
- status = H5Pget_fill_value((hid_t)plist_id, (hid_t)type_id, byteP);
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, 0);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1value */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_filter
- * Signature: (JIIJ[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1filter
- (JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags,
- jlong cd_nelmts, jintArray cd_values)
-{
- herr_t status = -1;
- jint *theArray;
- jboolean isCopy;
-
- if (cd_values == NULL) {
- status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter,
- (unsigned int)flags, (size_t)cd_nelmts, NULL);
- if (status < 0)
- h5libraryError(env);
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pset_filter: input array not pinned");
- }/* end if */
- else {
- status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter,
- (unsigned int)flags, (size_t)cd_nelmts, (const unsigned int *)theArray);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, theArray, JNI_ABORT);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1filter */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_nfilters
+ * Method: H5Pclose
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1nfilters
- (JNIEnv *env, jclass clss, jlong plist)
-{
- int retVal = -1;
-
- retVal = H5Pget_nfilters((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1nfilters */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter
- * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter
- (JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags,
- jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name)
-{
- herr_t status = -1;
- jint *flagsArray;
- jlong *cd_nelmtsArray;
- jint *cd_valuesArray;
- jint mode = JNI_ABORT;
- jboolean isCopy;
- jstring str;
- char *filter;
-
- if (namelen <= 0) {
- h5badArgument(env, "H5Pget_filter: namelen <= 0");
- } /* end if */
- else if (flags == NULL) {
- h5badArgument(env, "H5Pget_filter: flags is NULL");
- } /* end else if */
- else if (cd_nelmts == NULL) {
- h5badArgument(env, "H5Pget_filter: cd_nelmts is NULL");
- } /* end else if */
- else if (cd_values == NULL) {
- h5badArgument(env, "H5Pget_filter: cd_values is NULL");
- } /* end else if */
- else {
- filter = (char *)HDmalloc(sizeof(char)*(size_t)namelen);
- if (filter == NULL) {
- h5outOfMemory(env, "H5Pget_filter: namelen malloc failed");
- } /* end if */
- else {
- flagsArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy);
- if (flagsArray == NULL) {
- h5JNIFatalError(env, "H5Pget_filter: flags array not pinned");
- } /* end if */
- else {
- cd_nelmtsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy);
- if (cd_nelmtsArray == NULL) {
- h5JNIFatalError(env, "H5Pget_filter: nelmts array not pinned");
- } /* end if */
- else {
- cd_valuesArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- if (cd_valuesArray == NULL) {
- h5JNIFatalError(env, "H5Pget_filter: elmts array not pinned");
- } /* end if */
- else {
- /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = *(cd_nelmtsArray);
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
- unsigned int filter_config;
- status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
- (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
- (size_t)namelen, filter, &filter_config);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- /* end direct cast special */
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- mode = 0;
-
- /* NewStringUTF may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR filter);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Pget_filter: return string not pinned");
- } /* end if */
- else {
- /* SetObjectArrayElement may throw exceptiosn */
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str);
- } /* end else */
- } /* end else */
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, mode);
- }
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, mode);
- }
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, mode);
- }
- HDfree(filter);
- }
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_driver
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1driver
+Java_hdf_hdf5lib_H5__1H5Pclose
(JNIEnv *env, jclass clss, jlong plist)
{
- hid_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Pget_driver((hid_t) plist);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jlong)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1driver */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_cache
- * Signature: (JIJJD)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1cache
- (JNIEnv *env, jclass clss, jlong plist, jint mdc_nelmts, jlong rdcc_nelmts,
- jlong rdcc_nbytes, jdouble rdcc_w0)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_cache((hid_t)plist, (int)mdc_nelmts, (size_t)rdcc_nelmts,
- (size_t)rdcc_nbytes, (double) rdcc_w0);
- if (retVal < 0)
- h5libraryError(env);
+ if (plist >= 0)
+ if ((retVal = H5Pclose((hid_t) plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1cache */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_cache
- * Signature: (J[I[J[J[D)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1cache
- (JNIEnv *env, jclass clss, jlong plist, jintArray mdc_nelmts,
- jlongArray rdcc_nelmts, jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
-{
- herr_t status = -1;
- jint mode;
- jdouble *w0Array = (jdouble *)NULL;
- jlong *rdcc_nelmtsArray = (jlong *)NULL;
- jlong *nbytesArray = (jlong *)NULL;
- jboolean isCopy;
-
- if (rdcc_w0 != NULL) {
- w0Array = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR rdcc_w0, &isCopy);
- if (w0Array == NULL) {
- h5JNIFatalError(env, "H5Pget_cache: w0_array array not pinned");
- return -1;
- } /* end if */
- } /* end else */
-
- if (rdcc_nelmts != NULL) {
- rdcc_nelmtsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nelmts, &isCopy);
- if (rdcc_nelmtsArray == NULL) {
- /* exception -- out of memory */
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT);
- }
- h5JNIFatalError(env, "H5Pget_cache: rdcc_nelmts array not pinned");
- return -1;
- } /* end if */
- } /* end else */
-
- if (rdcc_nbytes != NULL) {
- nbytesArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nbytes, &isCopy);
- if (nbytesArray == NULL) {
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT);
- } /* end if */
- if (rdcc_nelmtsArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nelmts, rdcc_nelmtsArray, JNI_ABORT);
- } /* end if */
- h5JNIFatalError(env, "H5Pget_cache: nbytesArray array not pinned");
- return -1;
- } /* end if */
- } /* end else */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long rdcc_nelmts_temp = *(rdcc_nelmtsArray);
- size_t rdcc_nelmts_t = (size_t)rdcc_nelmts_temp;
- long long nbytes_temp = *(nbytesArray);
- size_t nbytes_t = (size_t)nbytes_temp;
-
- status = H5Pget_cache((hid_t)plist, (int *)NULL, &rdcc_nelmts_t,
- &nbytes_t, (double *)w0Array);
-
- *rdcc_nelmtsArray = (jlong)rdcc_nelmts_t;
- *nbytesArray = (jlong)nbytes_t;
- } /* end direct cast special */
-
-
- if (status < 0) {
- mode = JNI_ABORT;
- } /* end if */
- else {
- mode = 0; /* commit and free */
- } /* end else */
-
- if (rdcc_nelmtsArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nelmts, rdcc_nelmtsArray, mode);
- } /* end if */
-
- if (nbytesArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nbytes, nbytesArray, mode);
- } /* end if */
-
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, mode);
- } /* end if */
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1cache */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_buffer
- * Signature: (JJ[B[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1buffer
- (JNIEnv *env, jclass clss, jlong plist, jlong size, jbyteArray tconv, jbyteArray bkg)
-{
- h5unimplemented(env, "H5Pset_buffer: not implemented");
- return -1;
-#ifdef notdef
-
-/* DON'T IMPLEMENT THIS!!! */
- jint status = -1;
- jbyte *tconvP;
- jbyte *bkgP;
- jboolean isCopy;
-
- if (tconv == NULL)
- tconvP = (jbyte *)NULL;
- else {
- tconvP = ENVPTR->GetByteArrayElements(ENVPAR tconv, &isCopy);
- if (tconvP == NULL) {
- h5JNIFatalError(env, "H5Pset_buffer: tconv not pinned");
- return -1;
- }
- }
- if (bkg == NULL)
- bkgP = (jbyte *)NULL;
- else {
- bkgP = ENVPTR->GetByteArrayElements(ENVPAR bkg, &isCopy);
- if (bkgP == NULL) {
- h5JNIFatalError(env, "H5Pset_buffer: bkg not pinned");
- return -1;
- }
- }
-
- status = H5Pset_buffer((hid_t)plist, (size_t)size, tconvP, bkgP);
- if (status < 0) {
- if (tconv != NULL)
- ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, JNI_ABORT);
- if (bkg != NULL)
- ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, JNI_ABORT);
- h5libraryError(env);
- return -1;
- }
-
- if (tconv != NULL)
- ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, 0);
- if (bkg != NULL)
- ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, 0);
-
- return (jint)status;
-#endif
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer */
+} /* end Java_hdf_hdf5lib_H5__1H5Pclose */
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_buffer
- * Signature: (J[B[B)I
+ * TODO: H5Pencode
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1buffer
- (JNIEnv *env, jclass clss, jlong plist, jbyteArray tconv, jbyteArray bkg)
-{
- h5unimplemented(env, "H5Pget_buffer: not implemented");
- return -1;
-#ifdef notdef
-
-/* DON'T IMPLEMENT THIS!!! */
- jlong status = -1;
- jbyte *tconvP;
- jbyte *bkgP;
- jboolean isCopy;
-
- if (tconv == NULL) {
- h5nullArgument(env, "H5Pget_buffer: tconv input array is NULL");
- return -1;
- }
- tconvP = ENVPTR->GetByteArrayElements(ENVPAR tconv, &isCopy);
- if (tconvP == NULL) {
- h5JNIFatalError(env, "H5Pget_buffer: tconv not pinned");
- return -1;
- }
- if (bkg == NULL) {
- h5nullArgument(env, "H5Pget_buffer: bkg array is NULL");
- return -1;
- }
- bkgP = ENVPTR->GetByteArrayElements(ENVPAR bkg, &isCopy);
- if (bkgP == NULL) {
- h5JNIFatalError(env, "H5Pget_buffer: bkg not pinned");
- return -1;
- }
-
- status = H5Pget_buffer((hid_t)plist, tconvP, bkgP);
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, JNI_ABORT);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, JNI_ABORT);
- h5libraryError(env);
- return -1;
- }
- ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, 0);
-
- return (jint)status;
-#endif
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer */
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_buffer_size
- * Signature: (JJ)V
+ * TODO: H5Pdecode
*/
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- if (H5Pset_buffer((hid_t)plist, (size_t)size, NULL, NULL) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_buffer_size
- * Signature: (J)J
+ * Method: _H5Pcreate_class
+ * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- size_t size = 0;
-
- size = H5Pget_buffer((hid_t)plist, NULL, NULL);
- if (size == 0)
- h5libraryError(env);
-
- return (jlong)size;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_preserve
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1preserve
- (JNIEnv *env, jclass clss, jlong plist, jboolean status)
-{
- hbool_t st;
- herr_t retVal = -1;
-
- if (status == JNI_TRUE) {
- st = TRUE;
- } /* end if */
- else if (status == JNI_FALSE) {
- st = false;
- } /* end else if */
- else {
- h5badArgument(env, "H5Pset_preserve: status not TRUE or FALSE");
- return -1;
- } /* end else */
-
- retVal = H5Pset_preserve((hid_t)plist, st);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1preserve */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_preserve
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1preserve
- (JNIEnv *env, jclass clss, jlong plist)
-{
- herr_t retVal = -1;
-
- retVal = H5Pget_preserve((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1preserve */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_deflate
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1deflate
- (JNIEnv *env, jclass clss, jlong plist, jint level)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_deflate((hid_t)plist, (unsigned)level);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1deflate */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_gc_references
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
- (JNIEnv *env, jclass clss, jlong fapl_id, jboolean gc_ref)
-{
- herr_t retVal = -1;
- unsigned gc_ref_val;
-
- if (gc_ref == JNI_TRUE)
- gc_ref_val = 1;
- else
- gc_ref_val = 0;
-
- retVal = H5Pset_gc_references((hid_t)fapl_id, gc_ref_val);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1gc_1references */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_gc_references
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
- (JNIEnv *env, jclass clss, jlong fapl_id)
+Java_hdf_hdf5lib_H5__1H5Pcreate_1class
+ (JNIEnv *env, jclass clss, jlong parent_class, jstring name, jobject create_op,
+ jobject create_data, jobject copy_op, jobject copy_data, jobject close_op, jobject close_data)
{
- unsigned gc_ref_val = 0;
- jboolean bval = JNI_FALSE;
+ const char *cstr = NULL;
+ hid_t class_id = H5I_INVALID_HID;
- if (H5Pget_gc_references((hid_t)fapl_id, (unsigned *)&gc_ref_val) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- if (gc_ref_val == 1)
- bval = JNI_TRUE;
- } /* end else */
-
- return bval;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1gc_1references */
+ UNUSED(clss);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_btree_ratios
- * Signature: (JDDD)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
- (JNIEnv *env, jclass clss, jlong plist_id, jdouble left, jdouble middle, jdouble right)
-{
- herr_t status = -1;
-
- status = H5Pset_btree_ratios((hid_t)plist_id, (double)left,(double)middle, (double)right);
- if (status < 0)
- h5libraryError(env);
+ create_callback = create_op;
+ close_callback = close_op;
+ copy_callback = copy_op;
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "_H5Pcreate_class: class name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_btree_ratios
- * Signature: (J[D[D[D)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
- (JNIEnv *env, jclass clss, jlong plist_id, jdoubleArray left,
- jdoubleArray middle, jdoubleArray right)
-{
- herr_t status = -1;
- jdouble *leftP;
- jdouble *middleP;
- jdouble *rightP;
- jboolean isCopy;
-
- if (left == NULL) {
- h5nullArgument(env, "H5Pget_btree_ratios: left input array is NULL");
- } /* end if */
- else if (middle == NULL) {
- h5nullArgument(env, "H5Pget_btree_ratios: middle input array is NULL");
- } /* end else if */
- else if (right == NULL) {
- h5nullArgument(env, "H5Pget_btree_ratios: right input array is NULL");
- } /* end else if */
- else {
- leftP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR left, &isCopy);
- if (leftP == NULL) {
- h5JNIFatalError(env, "H5Pget_btree_ratios: left not pinned");
- } /* end if */
- else {
- middleP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR middle, &isCopy);
- if (middleP == NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_btree_ratios: middle not pinned");
- } /* end if */
- else {
- rightP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR right, &isCopy);
- if (rightP == NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_btree_ratios: middle not pinned");
- } /* end if */
- else {
- status = H5Pget_btree_ratios((hid_t)plist_id, (double *)leftP,
- (double *)middleP, (double *)rightP);
- if (status < 0) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, JNI_ABORT);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR right, rightP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, 0);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, 0);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR right, rightP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ if ((class_id = H5Pcreate_class((hid_t)parent_class, cstr, (H5P_cls_create_func_t)H5P_cls_create_cb, (void *) create_data,
+ (H5P_cls_copy_func_t)H5P_cls_copy_cb, (void *) copy_data, (H5P_cls_close_func_t)H5P_cls_close_cb, (void *) close_data)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios */
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_small_data_block_size
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- long sz = (long)size;
- herr_t retVal = -1;
-
- retVal = H5Pset_small_data_block_size((hid_t)plist, (hsize_t)sz);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size */
+ return (jlong)class_id;
+} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_small_data_block_size
- * Signature: (J)J
+ * Method: _H5Pcreate_class_nocb
+ * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- hsize_t s;
-
- if (H5Pget_small_data_block_size((hid_t)plist, &s) < 0)
- h5libraryError(env);
-
- return (jlong)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_alloc_time
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
- (JNIEnv *env, jclass clss, jlong plist, jint alloc_time)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_alloc_time((hid_t)plist, (H5D_alloc_time_t)alloc_time);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_alloc_time
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
- (JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time)
-{
- herr_t retVal = -1;
- jint *theArray;
- jboolean isCopy;
- H5D_alloc_time_t time;
-
- if (alloc_time == NULL) {
- /* exception ? */
- h5nullArgument(env, "H5Pget_alloc_time: alloc_time is NULL");
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR alloc_time, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_alloc_time: alloc_time not pinned");
- } /* end if */
- else {
- retVal = H5Pget_alloc_time((hid_t)plist, &time);
- if (retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR alloc_time, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = time;
- ENVPTR->ReleaseIntArrayElements(ENVPAR alloc_time, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fill_time
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
- (JNIEnv *env, jclass clss, jlong plist, jint fill_time)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_fill_time((hid_t)plist, (H5D_fill_time_t)fill_time);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1time */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fill_time
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
- (JNIEnv *env, jclass clss, jlong plist, jintArray fill_time)
-{
- herr_t retVal = -1;
- jint *theArray;
- jboolean isCopy;
- H5D_fill_time_t time;
-
- if (fill_time == NULL) {
- /* exception ? */
- h5nullArgument(env, "H5Pget_fill_time: fill_time is NULL");
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR fill_time, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fill_time: fill_time not pinned");
- } /* end if */
- else {
- retVal = H5Pget_fill_time((hid_t)plist, &time);
- if (retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR fill_time, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jint)time;
- ENVPTR->ReleaseIntArrayElements(ENVPAR fill_time, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1time */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pfill_value_defined
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
- (JNIEnv *env, jclass clss, jlong plist, jintArray status)
-{
- herr_t retVal = -1;
- jint *theArray;
- jboolean isCopy;
- H5D_fill_value_t value;
-
- if (status == NULL) {
- /* exception ? */
- h5nullArgument(env, "H5Pfill_value_defined: status is NULL");
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR status, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pfill_value_defined: status not pinned");
- } /* end if */
- else {
- retVal = H5Pfill_value_defined((hid_t)plist, &value);
- if (retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR status, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = value;
- ENVPTR->ReleaseIntArrayElements(ENVPAR status, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fletcher32
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
- (JNIEnv *env, jclass clss, jlong plist)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_fletcher32((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fletcher32 */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_edc_check
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
- (JNIEnv *env, jclass clss, jlong plist, jint check)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_edc_check((hid_t)plist, (H5Z_EDC_t)check);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1edc_1check */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_edc_check
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
- (JNIEnv *env, jclass clss, jlong plist)
-{
- H5Z_EDC_t retVal = -1;
-
- retVal = H5Pget_edc_check((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1edc_1check */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shuffle
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shuffle
- (JNIEnv *env, jclass clss, jlong plist)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_shuffle((hid_t)plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1shuffle */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_szip
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1szip
- (JNIEnv *env, jclass clss, jlong plist, jint options_mask, jint pixels_per_block)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_szip((hid_t)plist, (unsigned int)options_mask, (unsigned int)pixels_per_block);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1szip */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_hyper_vector_size
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong vector_size)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_hyper_vector_size((hid_t)plist, (size_t)vector_size);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_hyper_vector_size
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
- (JNIEnv *env, jclass clss, jlong plist, jlongArray vector_size)
-{
- herr_t retVal = -1;
- jlong *theArray;
- size_t size;
- jboolean isCopy;
-
- if (vector_size == NULL) {
- /* exception ? */
- h5nullArgument(env, "H5Pget_hyper_vector_size: vector_size is NULL");
- } /* end if */
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR vector_size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_hyper_vector_size: vector_size not pinned");
- } /* end if */
- else {
- retVal = H5Pget_hyper_vector_size((hid_t)plist, &size);
- if (retVal < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR vector_size, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)size;
- ENVPTR->ReleaseLongArrayElements(ENVPAR vector_size, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pall_filters_avail
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
- (JNIEnv *env, jclass clss, jlong dcpl_id)
-{
- htri_t bval = JNI_FALSE;
-
- bval = H5Pall_filters_avail((hid_t)dcpl_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
-
- return (jboolean)bval;
-} /* end Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pmodify_filter
- * Signature: (JIIJ[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pmodify_1filter
- (JNIEnv *env, jclass clss, jlong plist, jint filter,
- jint flags, jlong cd_nelmts, jintArray cd_values)
+Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb
+ (JNIEnv *env, jclass clss, jlong parent_class, jstring name)
{
- herr_t status = -1;
- jint *cd_valuesP;
- jboolean isCopy;
+ const char *cstr = NULL;
+ hid_t class_id = H5I_INVALID_HID;
- if (cd_values == NULL) {
- h5nullArgument(env, "H5Pmodify_filter: cd_values is NULL");
- } /* end if */
- else {
- cd_valuesP = ENVPTR->GetIntArrayElements(ENVPAR cd_values,&isCopy);
- if (cd_valuesP == NULL) {
- h5JNIFatalError(env, "H5Pmodify_filter: cd_values not pinned");
- } /* end if */
- else {
- status = H5Pmodify_filter((hid_t)plist, (H5Z_filter_t)filter,(const unsigned int)flags,
- (size_t)cd_nelmts, (unsigned int *)cd_valuesP);
+ UNUSED(clss);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesP, JNI_ABORT);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "_H5Pcreate_class_nocb: class name not pinned");
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ if ((class_id = H5Pcreate_class((hid_t)parent_class, cstr, NULL, NULL, NULL, NULL, NULL, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pmodify_1filter */
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter_by_id
- * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
- (JNIEnv *env, jclass clss, jlong plist, jint filter,
- jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name)
-{
- jboolean isCopy;
- herr_t status = -1;
- jint *cd_valuesArray;
- jint *flagsArray;
- jlong *cd_nelmtsArray;
- jstring str;
- char *aName;
- int i = 0;
- int rank;
- long bs;
-
- bs = (long)namelen;
- if (bs <= 0) {
- h5badArgument(env, "H5Pget_filter_by_id: namelen <= 0");
- } /* end if */
- else if (flags == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: flags is NULL");
- } /* end else if */
- else if (cd_nelmts == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: cd_nelms is NULL");
- } /* end else if */
- else if (cd_values == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: cd_values is NULL");
- } /* end else if */
- else if (name == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: name is NULL");
- } /* end else if */
- else {
- aName = (char*)HDmalloc(sizeof(char) * (size_t)bs);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Pget_filter_by_id: malloc failed");
- return -1;
- } /* end if */
-
- flagsArray = ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy);
- if (flagsArray == NULL) {
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned");
- return -1;
- } /* end if */
-
- cd_nelmtsArray = ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy);
- if (cd_nelmtsArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: cd_nelms not pinned");
- return -1;
- } /* end if */
-
- cd_valuesArray = ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- rank = ENVPTR->GetArrayLength(ENVPAR cd_values);
- if (cd_valuesArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: cd_values array not converted to unsigned int.");
- return -1;
- } /* end if */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = *(cd_nelmtsArray);
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
- unsigned int filter_config;
-
- status = H5Pget_filter_by_id2( (hid_t)plist, (H5Z_filter_t)filter,
- (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
- (size_t)namelen, (char *)aName, &filter_config);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- } /* end direct cast special */
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- HDfree(aName);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0);
-
- HDfree(aName);
- } /* end else */
- } /* end else */
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id */
+ return (jlong)class_id;
+} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fclose_degree
- * Signature: (JI)I
+ * Method: H5Pregister2
+ * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
- (JNIEnv *env, jclass clss, jlong plist, jint fc_degree)
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pregister2
+ (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size,
+ jbyteArray def_value, jobject prp_create, jobject prp_set, jobject prp_get, jobject prp_delete,
+ jobject prp_copy, jobject prp_cmp, jobject prp_close)
{
- herr_t retVal = -1;
-
- retVal = H5Pset_fclose_degree((hid_t)plist, (H5F_close_degree_t)fc_degree);
- if (retVal < 0)
- h5libraryError(env);
+ const char *cstr = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *propValBuf = NULL;
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree */
+ UNUSED(clss);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fclose_degree
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
- (JNIEnv *env, jclass clss, jlong plist)
-{
- H5F_close_degree_t degree;
+ copy_callback = prp_copy;
+ close_callback = prp_close;
+ create_callback = prp_create;
+ compare_callback = prp_cmp;
+ set_callback = prp_set;
+ get_callback = prp_get;
+ delete_callback = prp_delete;
- if (H5Pget_fclose_degree((hid_t)plist, &degree) < 0)
- h5libraryError(env);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pregister2: property name not pinned");
- return (jint)degree;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree */
+ PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pregister2: default property value buffer not pinned");
+ if ((status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, (H5P_prp_create_func_t)H5P_prp_create_cb,
+ (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb,
+ (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
-/**********************************************************************
- * *
- * File access properties *
- * *
- **********************************************************************/
+done:
+ if (propValBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, (status < 0) ? JNI_ABORT : 0);
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pregister2 */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_family
- * Signature: (JJJ)I
+ * Method: H5Pregister2_nocb
+ * Signature: (JLjava/lang/String;J[B)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
- (JNIEnv *env, jclass clss, jlong plist, jlong memb_size, jlong memb_plist)
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pregister2_1nocb
+ (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value)
{
- long ms = (long)memb_size;
- herr_t retVal = -1;
-
- retVal = H5Pset_fapl_family((hid_t)plist, (hsize_t)ms, (hid_t)memb_plist);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family */
+ const char *cstr = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *propValBuf = NULL;
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_family
- * Signature: (J[J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
- (JNIEnv *env, jclass clss, jlong tid, jlongArray memb_size, jlongArray memb_plist)
-{
- herr_t status = -1;
- jlong *sizeArray;
- jlong *plistArray;
- jint mode = JNI_ABORT;
- jboolean isCopy;
- hsize_t *sa;
- size_t i;
- size_t rank;
-
- if (memb_size == NULL) {
- h5nullArgument(env, "H5Pget_family: memb_size is NULL");
- } /* end if */
- else if (memb_plist == NULL) {
- h5nullArgument(env, "H5Pget_family: memb_plist is NULL");
- } /* end else if */
- else {
- sizeArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_size, &isCopy);
- if (sizeArray == NULL) {
- h5JNIFatalError(env, "H5Pget_family: sizeArray not pinned");
- } /* end if */
- else {
- rank = (size_t)ENVPTR->GetArrayLength(ENVPAR memb_size);
- sa = (hsize_t *)HDmalloc(rank * sizeof(hsize_t));
- if (sa == NULL) {
- h5JNIFatalError(env, "H5Screate-simple: dims not converted to hsize_t");
- } /* end if */
- else {
- plistArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_plist, &isCopy);
- if (plistArray == NULL) {
- h5JNIFatalError(env, "H5Pget_family: plistArray not pinned");
- } /* end if */
- else {
- status = H5Pget_fapl_family ((hid_t)tid, sa, (hid_t *)plistArray);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < rank; i++) {
- sizeArray[i] = (jlong)sa[i];
- } /* end for */
- mode = 0;
- } /* end else */
- ENVPTR->ReleaseLongArrayElements(ENVPAR memb_plist, plistArray, mode);
- }
- HDfree(sa);
- }
- ENVPTR->ReleaseLongArrayElements(ENVPAR memb_size, sizeArray, mode);
- }
- } /* end else */
+ UNUSED(clss);
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pregister2_nocb: property name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_core
- * Signature: (JJZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
- (JNIEnv *env, jclass clss, jlong fapl_id, jlong increment, jboolean backing_store)
-{
- herr_t retVal = -1;
+ PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pregister2_nocb: default property value buffer not pinned");
- retVal = H5Pset_fapl_core((hid_t)fapl_id, (size_t)increment, (hbool_t)backing_store);
- if (retVal < 0)
- h5libraryError(env);
+ if ((status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, NULL, NULL, NULL, NULL, NULL, NULL, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core */
+done:
+ if (propValBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, (status < 0) ? JNI_ABORT : 0);
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pregister2_1nocb */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_core
- * Signature: (J[J[Z)I
+ * Method: H5Pinsert2
+ * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
- (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray increment, jbooleanArray backing_store)
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pinsert2
+ (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size,
+ jbyteArray def_value, jobject prp_set, jobject prp_get, jobject prp_delete,
+ jobject prp_copy, jobject prp_cmp, jobject prp_close)
{
- herr_t status = -1;
- jint mode = JNI_ABORT;
- jlong *incArray;
- jboolean *backArray;
- jboolean isCopy;
-
- if (increment == NULL) {
- h5nullArgument(env, "H5Pget_fapl_core: increment is NULL");
- } /* end if */
- else if (backing_store == NULL) {
- h5nullArgument(env, "H5Pget_fapl_core: backing_store is NULL");
- } /* end else if */
- else {
- incArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR increment, &isCopy);
- if (incArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_core: incArray not pinned");
- } /* end if */
- else {
- backArray = (jboolean *)ENVPTR->GetBooleanArrayElements(ENVPAR backing_store, &isCopy);
- if (backArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_core: backArray not pinned");
- } /* end if */
- else {
- /* direct cast (size_t *)variable fails on 32-bit environment */
- long long inc_temp = *(incArray);
- size_t inc_t = (size_t)inc_temp;
-
- status = H5Pget_fapl_core((hid_t)fapl_id, &inc_t, (hbool_t *)backArray);
-
- *incArray = (jlong)inc_t;
- /* end direct cast special */
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- mode = 0;
- } /* end else */
- ENVPTR->ReleaseBooleanArrayElements(ENVPAR backing_store, backArray, mode);
- }
- ENVPTR->ReleaseLongArrayElements(ENVPAR increment, incArray, mode);
- }
- } /* end else */
+ const char *cstr = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *propValBuf = NULL;
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core */
+ UNUSED(clss);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_family_offset
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
- (JNIEnv *env, jclass clss, jlong fapl_id, jlong offset)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_family_offset ((hid_t)fapl_id, (hsize_t)offset);
- if (retVal < 0)
- h5libraryError(env);
+ copy_callback = prp_copy;
+ close_callback = prp_close;
+ compare_callback = prp_cmp;
+ set_callback = prp_set;
+ get_callback = prp_get;
+ delete_callback = prp_delete;
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1family_1offset */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pinsert2: property name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_family_offset
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
- (JNIEnv *env, jclass clss, jlong fapl_id)
-{
- hsize_t offset = 0;
- herr_t retVal = -1;
+ PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pinsert2: property value buffer not pinned");
- retVal = H5Pget_family_offset ((hid_t)fapl_id, &offset);
- if (retVal < 0)
- h5libraryError(env);
+ if ((status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf,
+ (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb,
+ (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jlong)offset;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1family_1offset */
+done:
+ if (propValBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, (status < 0) ? JNI_ABORT : 0);
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pinsert2 */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_log
- * Signature: (JLjava/lang/String;JJ)V
+ * Method: H5Pinsert2_nocb
+ * Signature: (JLjava/lang/String;J[B)V
*/
JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
- (JNIEnv *env, jclass clss, jlong fapl_id, jstring logfile, jlong flags, jlong buf_size)
+Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb
+ (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value)
{
- herr_t retVal = -1;
- const char *pLogfile;
+ const char *cstr = NULL;
+ jboolean isCopy;
+ herr_t status = FAIL;
+ jbyte *propValBuf = NULL;
- PIN_JAVA_STRING(logfile, pLogfile);
- if (pLogfile != NULL) {
- retVal = H5Pset_fapl_log( (hid_t)fapl_id, pLogfile, (unsigned long long)flags, (size_t)buf_size );
+ UNUSED(clss);
- UNPIN_JAVA_STRING(logfile, pLogfile);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pinsert2_nocb: property name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log */
+ PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pinsert2_nocb: property value buffer not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Premove_filter
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5P1remove_1filter
- (JNIEnv *env, jclass clss, jlong obj_id, jint filter)
-{
- herr_t status = -1;
-
- status = H5Premove_filter ((hid_t)obj_id, (H5Z_filter_t)filter);
- if (status < 0)
- h5libraryError(env);
-
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5P1remove_1filter */
+ if ((status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, NULL, NULL, NULL, NULL, NULL, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
+ if (propValBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, (status < 0) ? JNI_ABORT : 0);
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
+} /* end Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb */
/*
* Class: hdf_hdf5lib_H5
@@ -2154,18 +365,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pset
(JNIEnv *env, jclass clss, jlong plid, jstring name, jint val)
{
- hid_t retVal = -1;
- const char *cstr;
+ const char *cstr = NULL;
+ hid_t retVal = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Pset((hid_t)plid, cstr, &val);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, cstr);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pset: property name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Pset((hid_t)plid, cstr, &val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset */
@@ -2179,20 +391,21 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pexist
(JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- htri_t bval = JNI_FALSE;
- const char *cstr;
+ const char *cstr = NULL;
+ htri_t bval = JNI_FALSE;
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- bval = H5Pexist((hid_t)plid, cstr);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, cstr);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pexist: property name not pinned");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ if ((bval = H5Pexist((hid_t)plid, cstr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Pexist */
@@ -2206,19 +419,20 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1size
(JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- hid_t retVal = -1;
- const char *cstr;
+ const char *cstr = NULL;
size_t size = 0;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Pget_size((hid_t)plid, cstr, &size);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, cstr);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pget_size: property name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((status = H5Pget_size((hid_t)plid, cstr, &size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jlong) size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1size */
@@ -2232,11 +446,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1nprops
(JNIEnv *env, jclass clss, jlong plid)
{
- size_t nprops;
+ size_t nprops = 0;
+
+ UNUSED(clss);
if (H5Pget_nprops((hid_t)plid, &nprops) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)nprops;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1nprops */
@@ -2249,20 +466,23 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1class_1name
(JNIEnv *env, jclass clss, jlong plid)
{
- char *c_str;
- jstring j_str = NULL;
+ char *c_str = NULL;
+ jstring j_str = NULL;
- c_str = H5Pget_class_name((hid_t)plid);
- if (c_str == NULL) {
- h5libraryError(env);
- } /* end if */
- else {
- j_str = ENVPTR->NewStringUTF(ENVPAR c_str);
+ UNUSED(clss);
+
+ if (NULL == (c_str = H5Pget_class_name((hid_t)plid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, c_str))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_class_name: out of memory - unable to construct string from UTF characters");
+ }
+
+done:
+ if (c_str)
H5free_memory(c_str);
- if (j_str == NULL)
- h5JNIFatalError(env,"H5Pget_class_name: return string failed");
- } /* end else */
return j_str;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1class_1name */
@@ -2275,12 +495,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1class_1parent
(JNIEnv *env, jclass clss, jlong plid)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Pget_class_parent((hid_t)plid);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Pget_class_parent((hid_t)plid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1class_1parent */
@@ -2293,12 +515,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pisa_1class
(JNIEnv *env, jclass clss, jlong plid, jlong pcls)
{
- htri_t retVal = -1;
+ htri_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Pisa_class((hid_t)plid, (hid_t)pcls);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Pisa_class((hid_t)plid, (hid_t)pcls)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pisa_1class */
@@ -2311,19 +535,20 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget
(JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- herr_t retVal = -1;
- const char *cstr;
+ const char *cstr = NULL;
jint val;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Pget((hid_t)plid, cstr, &val);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, cstr);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pget: property name not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((status = H5Pget((hid_t)plid, cstr, &val)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jint)val;
} /* end Java_hdf_hdf5lib_H5_H5Pget */
@@ -2337,2653 +562,184 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pequal
(JNIEnv *env, jclass clss, jlong plid1, jlong plid2)
{
- htri_t retVal = -1;
+ htri_t retVal = FAIL;
- retVal = H5Pequal((hid_t)plid1, (hid_t)plid2);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pequal */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pcopy_prop
- * Signature: (JJLjava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pcopy_1prop
- (JNIEnv *env, jclass clss, jlong dst_plid, jlong src_plid, jstring name)
-{
- herr_t retVal = -1;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Pcopy_prop((hid_t)dst_plid, (hid_t)src_plid, cstr);
-
- UNPIN_JAVA_STRING(name, cstr);
-
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5Pequal((hid_t)plid1, (hid_t)plid2)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pcopy_1prop */
+} /* end Java_hdf_hdf5lib_H5_H5Pequal */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Premove
- * Signature: (JLjava/lang/String;)I
+ * Method: H5Piterate
+ * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Premove
- (JNIEnv *env, jclass clss, jlong plid, jstring name)
+Java_hdf_hdf5lib_H5_H5Piterate
+ (JNIEnv *env, jclass clss, jlong prop_id, jintArray idx, jobject callback_op, jobject op_data)
{
- herr_t retVal = -1;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Premove((hid_t)plid, cstr);
-
- UNPIN_JAVA_STRING(name, cstr);
-
- if (retVal < 0)
- h5libraryError(env);
- }
+ cb_wrapper wrapper = { callback_op, op_data };
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t status = FAIL;
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Premove */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Punregister
- * Signature: (JLjava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Punregister
- (JNIEnv *env, jclass clss, jlong plid, jstring name)
-{
- herr_t retVal = -1;
- const char *cstr;
+ UNUSED(clss);
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- retVal = H5Punregister((hid_t)plid, cstr);
+ ENVPTR->GetJavaVM(ENVONLY, &jvm);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, cstr);
+ if (NULL == op_data)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Piterate: op_data is NULL");
+ if (NULL == callback_op)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Piterate: callback_op is NULL");
- if (retVal < 0)
- h5libraryError(env);
+ if (NULL == idx) {
+ if ((status = H5Piterate((hid_t)prop_id, NULL, (H5P_iterate_t)H5P_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
}
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Punregister */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pclose_class
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5__1H5Pclose_1class
- (JNIEnv *env, jclass clss, jlong plid)
-{
- herr_t retVal = -1;
-
- retVal = H5Pclose_class((hid_t)plid);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5__1H5Pclose_1class */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter2
- * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter2
- (JNIEnv *env, jclass clss, jlong plist, jint filter_number,
- jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen,
- jobjectArray name, jintArray filter_config)
-{
- herr_t status = -1;
- jint *flagsArray;
- jlong *cd_nelmtsArray;
- jint *cd_valuesArray;
- jint *filter_configArray;
- jboolean isCopy;
- char *filter;
- jstring str;
-
- if (namelen <= 0) {
- h5badArgument(env, "H5Pget_filter: namelen <= 0");
- } /* end if */
- else if (flags == NULL) {
- h5badArgument(env, "H5Pget_filter: flags is NULL");
- } /* end else if */
- else if (cd_nelmts == NULL) {
- h5badArgument(env, "H5Pget_filter: cd_nelmts is NULL");
- } /* end else if */
- else if (filter_config == NULL) {
- h5badArgument(env, "H5Pget_filter: filter_config is NULL");
- } /* end else if */
else {
- filter = (char*)HDmalloc(sizeof(char)*(size_t)namelen);
- if (filter == NULL) {
- h5outOfMemory(env, "H5Pget_filter: namelent malloc failed");
- return -1;
- } /* end if */
- flagsArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy);
- if (flagsArray == NULL) {
- HDfree(filter);
- h5JNIFatalError(env, "H5Pget_filter: flags array not pinned");
- return -1;
- } /* end if */
-
- cd_nelmtsArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy);
- if (cd_nelmtsArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(filter);
- h5JNIFatalError(env, "H5Pget_filter: nelmts array not pinned");
- return -1;
- } /* end if */
- filter_configArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR filter_config, &isCopy);
- if (filter_configArray == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(filter);
- h5JNIFatalError(env, "H5Pget_filter: filter_config array not pinned");
- return -1;
- } /* end if */
-
- if (*cd_nelmtsArray == 0 && cd_values == NULL) {
- /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = 0;
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
-
- status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
- (unsigned int *)flagsArray, &cd_nelmts_t, NULL,
- (size_t)namelen, filter, (unsigned int *)filter_configArray);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- } /* end if */
- else {
- if (cd_values == NULL) {
- h5badArgument(env, "H5Pget_filter: cd_values is NULL");
- return -1;
- } /* end if */
- cd_valuesArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- if (cd_valuesArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(filter);
- h5JNIFatalError(env, "H5Pget_filter: elmts array not pinned");
- return -1;
- } /* end if */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = *(cd_nelmtsArray);
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
-
- status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number,
- (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
- (size_t)namelen, filter, (unsigned int *)filter_configArray);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- } /* end direct cast special */
- } /* end else */
-
- if (status < 0) {
- if (cd_values)
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(filter);
- h5libraryError(env);
- } /* end if */
- else {
- if (cd_values)
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0);
- /* NewStringUTF may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR filter);
- HDfree(filter);
- if (str == NULL)
- h5JNIFatalError(env, "H5Pget_filter: return string not pinned");
- else
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str);
- } /* end else */
- } /* end else */
+ PIN_INT_ARRAY(ENVONLY, idx, theArray, &isCopy, "H5Piterate: idx not pinned");
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter2 */
+ if ((status = H5Piterate((hid_t)prop_id, (int *)&theArray[0], (H5P_iterate_t)H5P_iterate_cb, (void *)&wrapper)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter_by_id2
- * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
- (JNIEnv *env, jclass clss, jlong plist, jint filter,
- jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name, jintArray filter_config)
-{
- herr_t status = -1;
- int i = 0;
- jint *cd_valuesArray;
- jint *flagsArray;
- jint *filter_configArray;
- jlong *cd_nelmtsArray;
- jboolean isCopy;
- long bs;
- char *aName;
- jstring str;
-
- bs = (long)namelen;
- if (bs <= 0) {
- h5badArgument(env, "H5Pget_filter_by_id: namelen <= 0");
- } /* end if */
- else if (flags == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: flags is NULL");
- } /* end else if */
- else if (cd_nelmts == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: cd_nelms is NULL");
- } /* end else if */
- else if (cd_values == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: cd_values is NULL");
- } /* end else if */
- else if (name == NULL) {
- h5nullArgument(env, "H5Pget_filter_by_id: name is NULL");
- } /* end else if */
- else if (filter_config == NULL) {
- h5badArgument(env, "H5Pget_filter_by_id: filter_config is NULL");
- } /* end else if */
- else {
- aName = (char*)HDmalloc(sizeof(char) * (size_t)bs);
- if (aName == NULL) {
- h5outOfMemory(env, "H5Pget_filter_by_id: malloc failed");
- return -1;
- } /* end if */
- flagsArray = ENVPTR->GetIntArrayElements(ENVPAR flags,&isCopy);
- if (flagsArray == NULL) {
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned");
- return -1;
- } /* end if */
- cd_nelmtsArray = ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy);
- if (cd_nelmtsArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: cd_nelms not pinned");
- return -1;
- } /* end if */
- cd_valuesArray = ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy);
- if (cd_valuesArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: cd_values array not converted to unsigned int.");
- return -1;
- } /* end if */
- filter_configArray = ENVPTR->GetIntArrayElements(ENVPAR filter_config, &isCopy);
- if (filter_configArray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- HDfree(aName);
- h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned");
- return -1;
- } /* end if */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long cd_nelmts_temp = *(cd_nelmtsArray);
- size_t cd_nelmts_t = (size_t)cd_nelmts_temp;
-
- status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter,
- (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray,
- (size_t)namelen, (char *)aName, (unsigned int *)filter_configArray);
-
- *cd_nelmtsArray = (jlong)cd_nelmts_t;
- } /* end direct cast special handling */
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT);
- HDfree(aName);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- HDfree(aName);
- ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, 0);
- } /* end else */
- } /* end else */
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, idx, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_nlinks
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1nlinks
- (JNIEnv *env, jclass clss, jlong lapl_id)
-{
- size_t nlinks;
- if (H5Pget_nlinks((hid_t)lapl_id, &nlinks) < 0)
- h5libraryError(env);
-
- return (jlong) nlinks;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1nlinks */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_nlinks
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1nlinks
- (JNIEnv *env, jclass clss, jlong lapl_id, jlong nlinks)
-{
- herr_t retVal = -1;
-
- if (nlinks <= 0) {
- h5badArgument(env, "H5Pset_1nlinks: nlinks_l <= 0");
- } /* end if */
- else {
- retVal = H5Pset_nlinks((hid_t)lapl_id, (size_t)nlinks);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1nlinks */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_libver_bounds
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
- (JNIEnv *env, jclass clss, jlong fapl_id, jintArray libver)
-{
- herr_t retVal = -1;
- H5F_libver_t *theArray = NULL;
- jboolean isCopy;
-
- if (libver == NULL) {
- h5nullArgument(env, "H5Pget_libver_bounds: libversion bounds is NULL");
- } /* end if */
- else {
- theArray = (H5F_libver_t*)ENVPTR->GetIntArrayElements(ENVPAR libver, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_libver_bounds: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_libver_bounds((hid_t)fapl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR libver, (jint*)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR libver, (jint*)theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_libver_bounds
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
- (JNIEnv *env, jclass clss, jlong fapl_id, jint low, jint high)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_libver_bounds((hid_t)fapl_id, (H5F_libver_t)low, (H5F_libver_t)high);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_link_creation_order
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
- (JNIEnv *env, jclass clss, jlong gcpl_id)
-{
- unsigned crt_order_flags;
-
- if(H5Pget_link_creation_order((hid_t)gcpl_id, &crt_order_flags) < 0)
- h5libraryError(env);
-
- return (jint)crt_order_flags;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_link_creation_order
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
- (JNIEnv *env, jclass clss, jlong gcpl_id, jint crt_order_flags)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_link_creation_order((hid_t)gcpl_id, (unsigned)crt_order_flags);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_attr_creation_order
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
- (JNIEnv *env, jclass clss, jlong ocpl_id)
-{
- unsigned crt_order_flags;
-
- if(H5Pget_attr_creation_order((hid_t)ocpl_id, &crt_order_flags) < 0)
- h5libraryError(env);
-
- return (jint)crt_order_flags;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_attr_creation_order
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
- (JNIEnv *env, jclass clss, jlong ocpl_id, jint crt_order_flags)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_attr_creation_order((hid_t)ocpl_id, (unsigned)crt_order_flags);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_copy_object
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
- (JNIEnv *env, jclass clss, jlong ocp_plist_id, jint copy_options)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_copy_object((hid_t)ocp_plist_id, (unsigned)copy_options);
- if(retVal < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1copy_1object */
+} /* end Java_hdf_hdf5lib_H5_H5Piterate */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_copy_object
- * Signature: (J)I
+ * Method: H5Pcopy_prop
+ * Signature: (JJLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
- (JNIEnv *env, jclass clss, jlong ocp_plist_id)
+Java_hdf_hdf5lib_H5_H5Pcopy_1prop
+ (JNIEnv *env, jclass clss, jlong dst_plid, jlong src_plid, jstring name)
{
- unsigned copy_options;
+ const char *cstr = NULL;
+ herr_t retVal = FAIL;
- if(H5Pget_copy_object((hid_t)ocp_plist_id, &copy_options) < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)copy_options;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1copy_1object */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pcopy_prop: property name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_create_intermediate_group
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
- (JNIEnv *env, jclass clss, jlong lcpl_id, jboolean crt_intermed_group)
-{
- herr_t retVal = -1;
+ if ((retVal = H5Pcopy_prop((hid_t)dst_plid, (hid_t)src_plid, cstr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Pset_create_intermediate_group((hid_t)lcpl_id, (unsigned)crt_intermed_group);
- if(retVal < 0)
- h5libraryError(env);
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_create_intermediate_group
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
- (JNIEnv *env, jclass clss, jlong lcpl_id)
-{
- unsigned crt_intermed_group;
-
- if(H5Pget_create_intermediate_group((hid_t)lcpl_id, &crt_intermed_group) < 0)
- h5libraryError(env);
-
- return (jboolean)crt_intermed_group;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group */
+} /* end Java_hdf_hdf5lib_H5_H5Pcopy_1prop */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_data_transform
+ * Method: H5Premove
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
- (JNIEnv *env, jclass clss, jlong plist_id, jstring expression)
-{
- herr_t retVal = -1;
- const char *express;
-
- PIN_JAVA_STRING(expression, express);
- if (express != NULL) {
- retVal = H5Pset_data_transform((hid_t)plist_id, express);
-
- UNPIN_JAVA_STRING(expression, express);
-
- if (retVal < 0)
- h5libraryError(env);
- }
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1data_1transform */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_data_transform
- * Signature: (J[Ljava/lang/String;J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
- (JNIEnv *env, jclass clss, jlong plist_id, jobjectArray expression, jlong size)
-{
- size_t buf_size;
- char *express;
- jlong express_size = -1;
- jstring str = NULL;
-
- if (size <= 0) {
- h5badArgument(env, "H5Pget_data_transform: size <= 0");
- } /* end if */
- else {
- express_size = (jlong)H5Pget_data_transform((hid_t)plist_id, (char*)NULL, (size_t)size);
- if(express_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- buf_size = (size_t)express_size + 1;/* add extra space for the null terminator */
- express = (char*)HDmalloc(sizeof(char) * buf_size);
- if (express == NULL) {
- h5outOfMemory(env, "H5Pget_data_transform: malloc failed ");
- } /* end if */
- else {
- express_size = (jlong)H5Pget_data_transform((hid_t)plist_id, express, (size_t)size);
- if (express_size < 0) {
- HDfree(express);
- h5libraryError(env);
- }
- else {
- str = ENVPTR->NewStringUTF(ENVPAR express);
- HDfree(express);
- if (str == NULL)
- h5JNIFatalError(env, "H5Pget_data_transform: return string not created");
- else
- ENVPTR->SetObjectArrayElement(ENVPAR expression, 0, str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- return express_size;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1data_1transform */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_acc_flags
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
- (JNIEnv *env, jclass clss, jlong lapl_id)
-{
- unsigned flags;
-
- if(H5Pget_elink_acc_flags((hid_t)lapl_id, &flags) < 0)
- h5libraryError(env);
-
- return (jint)flags;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_acc_flags
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
- (JNIEnv *env, jclass clss, jlong lapl_id, jint flags)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_elink_acc_flags((hid_t)lapl_id, (unsigned)flags);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint) retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_link_phase_change
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
- (JNIEnv *env, jclass clss, jlong gcpl_id, jint max_compact, jint min_dense)
-{
- herr_t retVal = -1;
-
- if(max_compact < min_dense) {
- h5badArgument(env, "H5Pset_link_phase_change: max compact value must be >= min dense value");
- } /* end if */
- else if(max_compact > 65535) {
- h5badArgument(env, "H5Pset_link_phase_change: max compact value must be < 65536");
- } /* end else if */
- else if(min_dense > 65535) {
- h5badArgument(env, "H5Pset_link_phase_change: min dense value must be < 65536");
- } /* end else if */
- else {
- retVal = H5Pset_link_phase_change((hid_t)gcpl_id, (unsigned)max_compact, (unsigned)min_dense);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_link_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
- (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray links)
-{
- herr_t retVal = -1;
- unsigned *theArray = NULL;
- jboolean isCopy;
-
- if (links == NULL) {
- h5nullArgument( env, "H5Pget_link_phase_change: links is NULL");
- } /* end if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR links, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError( env, "H5Pget_link_phase_change: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_link_phase_change((hid_t)gcpl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR links, (jint *)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR links, (jint *)theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_attr_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
- (JNIEnv *env, jclass clss, jlong ocpl_id, jintArray attributes)
-{
- herr_t retVal = -1;
- unsigned *theArray = NULL;
- jboolean isCopy;
-
- if (attributes == NULL) {
- h5nullArgument(env, "H5Pget_attr_phase_change: attributes is NULL");
- } /* end if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR attributes, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_attr_phase_change: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_attr_phase_change((hid_t)ocpl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR attributes, (jint *)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR attributes, (jint *)theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_attr_phase_change
- * Signature: (JII)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
- (JNIEnv *env, jclass clss, jlong ocpl_id, jint max_compact, jint min_dense)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_attr_phase_change((hid_t)ocpl_id, (unsigned)max_compact, (unsigned)min_dense);
- if(retVal < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
- (JNIEnv *env, jclass clss, jlong fcpl_id, jintArray size)
-{
- herr_t retVal = -1;
- unsigned *theArray = NULL;
- jboolean isCopy;
-
- if (size == NULL) {
- h5nullArgument(env, "H5Pget_shared_mesg_phase_change: size is NULL");
- } /* end if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR size, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_shared_mesg_phase_change: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR size, (jint *)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR size, (jint *)theArray, 0);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_phase_change
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
- (JNIEnv *env, jclass clss, jlong fcpl_id, jint max_list, jint min_btree)
-{
- herr_t retVal = -1;
-
- /* Check that values are sensible. The min_btree value must be no greater
- * than the max list plus one.
- *
- * Range check to make certain they will fit into encoded form.
- */
-
- if(max_list + 1 < min_btree) {
- h5badArgument(env, "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value");
- } /* end if */
- else if(max_list > H5O_SHMESG_MAX_LIST_SIZE) {
- h5badArgument(env, "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE");
- } /* end else if */
- else if(min_btree > H5O_SHMESG_MAX_LIST_SIZE) {
- h5badArgument(env, "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE");
- } /* end else if */
- else {
- retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_nindexes
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
- (JNIEnv *env, jclass clss, jlong fcpl_id)
-{
- unsigned nindexes;
-
- if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
- h5libraryError(env);
-
- return (jint)nindexes;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_nindexes
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
- (JNIEnv *env, jclass clss, jlong plist_id, jint nindexes)
-{
- herr_t retVal = -1;
-
- if (nindexes > H5O_SHMESG_MAX_NINDEXES) {
- h5badArgument(env, "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES");
- } /* end if */
- else {
- retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_index
- * Signature: (JIII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
- (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num,
- jint mesg_type_flags, jint min_mesg_size)
-{
- herr_t retVal = -1;
- unsigned nindexes;/* Number of SOHM indexes */
-
- /* Check arguments */
- if(mesg_type_flags > H5O_SHMESG_ALL_FLAG) {
- h5badArgument(env, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags");
- } /* end if */
- else if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0) { /* Read the current number of indexes */
- h5libraryError(env);
- } /* end else if */
- else {
- /* Range check */
- if((unsigned)index_num >= nindexes) {
- h5badArgument(env, "H5Pset_shared_mesg_index: index_num is too large; no such index");
- } /* end if */
- else {
- retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned) mesg_type_flags, (unsigned) min_mesg_size);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_index
- * Signature: (JI[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
- (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jintArray mesg_info)
-{
- herr_t retVal = -1;
- unsigned nindexes;/* Number of SOHM indexes */
- unsigned *theArray = NULL;
- jboolean isCopy;
-
- /* Read the current number of indexes */
- if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes)<0) {
- h5libraryError(env);
- } /* end if */
- else {
- /* Range check */
- if((unsigned)index_num >= nindexes) {
- h5badArgument(env, "H5Pget_shared_mesg_index: index_num is too large; no such index");
- } /* end if */
- else if (mesg_info == NULL) {
- h5nullArgument(env, "H5Pget_shared_mesg_index: mesg_info is NULL");
- } /* end else if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR mesg_info, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_shared_mesg_index: input not pinned");
- } /* end if */
- else {
- retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR mesg_info, (jint*)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR mesg_info, (jint*)theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_local_heap_size_hint
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
- (JNIEnv *env, jclass clss, jlong gcpl_id, jlong size_hint)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_local_heap_size_hint((hid_t)gcpl_id, (size_t)size_hint);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_local_heap_size_hint
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
- (JNIEnv *env, jclass clss, jlong gcpl_id)
-{
- size_t size_hint;
-
- if(H5Pget_local_heap_size_hint((hid_t)gcpl_id, &size_hint) < 0)
- h5libraryError(env);
-
- return (jlong)size_hint;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_nbit
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1nbit
- (JNIEnv *env, jclass clss, jlong plist_id)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_nbit((hid_t)plist_id);
- if(retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1nbit */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_scaleoffset
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
- (JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, jint scale_factor)
-{
- herr_t retVal = -1;
-
- /* Check arguments */
- if(scale_factor < 0) {
- h5badArgument(env, "H5Pset_scaleoffset: scale factor must be > 0");
- } /* end if */
- else {
- if(scale_type != H5Z_SO_FLOAT_DSCALE && scale_type != H5Z_SO_FLOAT_ESCALE && scale_type != H5Z_SO_INT){
- h5badArgument(env, "H5Pset_scaleoffset: invalid scale type");
- } /* end if */
- else {
- retVal = H5Pset_scaleoffset((hid_t)plist_id, (H5Z_SO_scale_type_t)scale_type, scale_factor);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_est_link_info
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
- (JNIEnv *env, jclass clss, jlong gcpl_id, jint est_num_entries, jint est_name_len)
-{
- herr_t retVal = -1;
-
- /* Range check values */
- if((est_num_entries > 65535) || (est_name_len > 65535)) {
- h5badArgument(env, "H5Pset_est_link_info: est. name length or number of entries must be < 65536");
- } /* end if */
- else {
- retVal = H5Pset_est_link_info((hid_t)gcpl_id, (unsigned)est_num_entries, (unsigned)est_name_len);
- if(retVal < 0)
- h5libraryError(env);
- } /* end else */
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_est_link_info
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
- (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray link_info)
+Java_hdf_hdf5lib_H5_H5Premove
+ (JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- herr_t retVal = -1;
- unsigned *theArray = NULL;
- jboolean isCopy;
+ const char *cstr = NULL;
+ herr_t retVal = FAIL;
- if (link_info == NULL) {
- h5nullArgument(env, "H5Pget_est_link_info: link_info is NULL");
- } /* end if */
- else {
- theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR link_info,&isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_est_link_info: input not pinned");
- } /* end if */
- else {
- retVal= H5Pget_est_link_info((hid_t)gcpl_id, &(theArray[0]), &(theArray[1]));
- if(retVal < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR link_info, (jint *)theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR link_info, (jint *)theArray, 0);
- } /* end else */
- } /* end else */
+ UNUSED(clss);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info */
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Premove: property name not pinned");
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_fapl
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
- (JNIEnv *env, jclass clss, jlong lapl_id, jlong fapl_id)
-{
- herr_t retVal = -1;
+ if ((retVal = H5Premove((hid_t)plid, cstr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Pset_elink_fapl((hid_t)lapl_id, (hid_t)fapl_id);
- if(retVal < 0)
- h5libraryError(env);
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pget_elink_fapl
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
- (JNIEnv *env, jclass clss, jlong lapl_id)
-{
- hid_t retVal = -1;
-
- retVal = H5Pget_elink_fapl((hid_t)lapl_id);
- if (retVal < 0)
- h5libraryError(env);
-
- return (jlong)retVal;
-} /* end Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl */
+} /* end Java_hdf_hdf5lib_H5_H5Premove */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_prefix
+ * Method: H5Punregister
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
- (JNIEnv *env, jclass clss, jlong lapl_id, jstring prefix)
-{
- herr_t retVal = -1;
- const char *aName;
-
- PIN_JAVA_STRING(prefix, aName);
- if (aName != NULL) {
- retVal = H5Pset_elink_prefix((hid_t)lapl_id, aName);
-
- UNPIN_JAVA_STRING(prefix, aName);
-
- if(retVal < 0)
- h5libraryError(env);
- }
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_prefix
- * Signature: (J[Ljava/lang/String;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
- (JNIEnv *env, jclass clss, jlong lapl_id, jobjectArray prefix)
+Java_hdf_hdf5lib_H5_H5Punregister
+ (JNIEnv *env, jclass clss, jlong plid, jstring name)
{
- size_t size = 0;
- char *pre;
- jlong prefix_size = -1;
- jstring str = NULL;
-
- if (prefix == NULL) {
- h5nullArgument(env, "H5Pget_elink_prefix: prefix is NULL");
- } /* end if */
- else {
- prefix_size = (jlong)H5Pget_elink_prefix((hid_t)lapl_id, (char*)NULL, size);
- if(prefix_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- size = (size_t)prefix_size + 1;/* add extra space for the null terminator */
- pre = (char*)HDmalloc(sizeof(char)*size);
- if (pre == NULL) {
- h5outOfMemory(env, "H5Pget_elink_prefix: malloc failed ");
- } /* end if */
- else {
- prefix_size = (jlong)H5Pget_elink_prefix((hid_t)lapl_id, (char*)pre, size);
-
- if (prefix_size < 0) {
- HDfree(pre);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR pre);
- HDfree(pre);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Pget_elink_prefix: return string not created");
- } /* end if */
- else
- ENVPTR->SetObjectArrayElement(ENVPAR prefix, 0, str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-
- return prefix_size;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix */
+ const char *cstr = NULL;
+ herr_t retVal = FAIL;
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_direct
- * Signature: (JJJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
- (JNIEnv *env, jclass clss, jlong fapl_id, jlong alignment,
- jlong block_size, jlong cbuf_size)
-{
- herr_t retVal = -1;
+ UNUSED(clss);
-#ifdef H5_HAVE_DIRECT
- retVal = H5Pset_fapl_direct((hid_t)fapl_id, (size_t)alignment, (size_t)block_size, (size_t)cbuf_size);
-#endif
- if(retVal < 0)
- h5libraryError(env);
+ PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Punregister: property name not pinned");
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct */
+ if ((retVal = H5Punregister((hid_t)plid, cstr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_direct
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
- (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray info)
-{
- herr_t retVal = -1;
-
-#ifdef H5_HAVE_DIRECT
- size_t alignment = 0;
- size_t block_size = 0;
- size_t cbuf_size = 0;
- jlong *theArray;
- jboolean isCopy;
- if (info == NULL) {
- h5nullArgument(env, "H5Pget_fapl_direct: info input array is NULL");
- } /* end if */
- else {
- if (ENVPTR->GetArrayLength(ENVPAR info) < 3) {
- h5badArgument( env, "H5Pget_fapl_direct: info input array < 4");
- } /* end if */
- else {
- theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR info, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_direct: info not pinned");
- } /* end if */
- else {
- retVal = H5Pget_fapl_direct((hid_t)fapl_id, &alignment, &block_size, &cbuf_size);
- if(retVal < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR info, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- theArray[0] = (jlong)alignment;
- theArray[1] = (jlong)block_size;
- theArray[2] = (jlong)cbuf_size;
- ENVPTR->ReleaseLongArrayElements(ENVPAR info, theArray, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
-#else
- if (retVal < 0)
- h5libraryError(env);
-#endif
+done:
+ if (cstr)
+ UNPIN_JAVA_STRING(ENVONLY, name, cstr);
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct */
+} /* end Java_hdf_hdf5lib_H5_H5Punregister */
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_sec2
+ * Method: _H5Pclose_class
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
- (JNIEnv *env, jclass clss, jlong fapl_id)
+Java_hdf_hdf5lib_H5__1H5Pclose_1class
+ (JNIEnv *env, jclass clss, jlong plid)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Pset_fapl_sec2((hid_t) fapl_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2 */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_stdio
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
- (JNIEnv *env, jclass clss, jlong fapl_id)
-{
- herr_t retVal = -1;
-
- retVal = H5Pset_fapl_stdio((hid_t) fapl_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Pclose_class((hid_t)plid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_windows
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
- (JNIEnv *env, jclass clss, jlong fapl_id)
-{
- herr_t retVal = -1;
-
-#ifdef H5_HAVE_WINDOWS
- retVal = H5Pset_fapl_windows((hid_t) fapl_id);
-#endif
- if (retVal < 0)
- h5libraryError(env);
-
- return (jint)retVal;
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_muti
- * Signature: (J[I[J[Ljava/lang/String;[J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
- (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map,
- jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr)
-{
- herr_t status = -1;
- int i;
- jint *themapArray = NULL;
- jlong *thefaplArray = NULL;
- jlong *theaddrArray = NULL;
- char **mName = NULL;
- jstring str;
- jboolean isCopy;
- int relax = 0;
-
- if (memb_map) {
- themapArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR memb_map, &isCopy);
- if (themapArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_map not pinned");
- return 0;
- } /* end if */
- } /* end if */
-
- if (memb_fapl) {
- thefaplArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR memb_fapl, &isCopy);
- if (thefaplArray == NULL) {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_fapl not pinned");
- return 0;
- } /* end if */
- } /* end if */
-
- if (memb_addr) {
- theaddrArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR memb_addr, &isCopy);
- if (theaddrArray == NULL) {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_addr not pinned");
- return 0;
- } /* end if */
- } /* end if */
-
- if (memb_name)
- mName = (char**)HDcalloc(H5FD_MEM_NTYPES, sizeof (*mName));
-
- status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t*)themapArray, (hid_t*)thefaplArray, mName, (haddr_t*)theaddrArray, (hbool_t*)&relax);
-
- if (status < 0) {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT);
- if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, JNI_ABORT);
- if (memb_name) h5str_array_free(mName, H5FD_MEM_NTYPES);
- h5libraryError(env);
- } /* end if */
- else {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, 0);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, 0);
- if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, 0);
-
- if (memb_name) {
- if (mName) {
- for (i = 0; i < H5FD_MEM_NTYPES; i++) {
- if (*(mName + i)) {
- str = ENVPTR->NewStringUTF(ENVPAR *(mName+i));
- ENVPTR->SetObjectArrayElement(ENVPAR memb_name, i, (jobject)str);
- } /* end if */
- } /* for (i=0; i<n; i++)*/
- } /* end if */
- h5str_array_free(mName, H5FD_MEM_NTYPES);
- } /* end if */
- } /* end else */
-
- return (relax!=0);
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_muti
- * Signature: (J[I[J[Ljava/lang/String;[JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
- (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map,
- jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr, jboolean relax)
-{
- herr_t status = -1;
- jint *themapArray = NULL;
- jlong *thefaplArray = NULL;
- jlong *theaddrArray = NULL;
- jboolean isCopy;
- jclass Sjc;
- jstring rstring;
- jobject o;
- jboolean bb;
- const char **mName = NULL;
- char *member_name[H5FD_MEM_NTYPES];
-
- if (memb_map) {
- themapArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR memb_map, &isCopy);
- if (themapArray == NULL) {
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_map not pinned");
- return;
- } /* end if */
- } /* end if */
-
- if (memb_fapl) {
- thefaplArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_fapl, &isCopy);
- if (thefaplArray == NULL) {
- if (memb_map)
- ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_fapl not pinned");
- return;
- } /* end if */
- } /* end if */
-
- if (memb_addr) {
- theaddrArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_addr, &isCopy);
- if (theaddrArray == NULL) {
- if (memb_map)
- ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- if (memb_fapl)
- ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_fapl_muti: memb_addr not pinned");
- return;
- } /* end if */
- } /* end if */
-
- HDmemset(member_name, 0, H5FD_MEM_NTYPES * sizeof(char*));
- if (memb_name) {
- int i;
- for (i = 0; i < H5FD_MEM_NTYPES; i++) {
- jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray) memb_name, i);
- if (obj != 0) {
- jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj);
- const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
-
- if (utf8) {
- member_name[i] = (char*)HDmalloc(HDstrlen(utf8) + 1);
- if (member_name[i]) {
- strcpy(member_name[i], utf8);
- } /* end if */
- } /* end if */
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
- ENVPTR->DeleteLocalRef(ENVPAR obj);
- } /* end if */
- } /* end for */
- mName = (const char **)member_name;
- } /* end if */
-
- status = H5Pset_fapl_multi((hid_t)tid, (const H5FD_mem_t *)themapArray, (const hid_t *)thefaplArray, mName, (const haddr_t *)theaddrArray, (hbool_t)relax);
-
- if (status < 0) {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT);
- if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, JNI_ABORT);
- if (memb_name) {
- int i;
- for (i = 0; i < H5FD_MEM_NTYPES; i++)
- HDfree(member_name[i]);
- } /* end if */
- h5libraryError(env);
- } /* end if */
- else {
- if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, 0);
- if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, 0);
- if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, 0);
- if (memb_name) {
- if (mName != NULL) {
- int i;
- Sjc = ENVPTR->FindClass(ENVPAR "java/lang/String");
- if (Sjc != NULL) {
- for (i = 0; i < H5FD_MEM_NTYPES; i++) {
- rstring = ENVPTR->NewStringUTF(ENVPAR member_name[i]);
- o = ENVPTR->GetObjectArrayElement(ENVPAR memb_name, i);
- if (o != NULL) {
- bb = ENVPTR->IsInstanceOf(ENVPAR o, Sjc);
- if (bb == JNI_TRUE) {
- ENVPTR->SetObjectArrayElement(ENVPAR memb_name, i, (jobject)rstring);
- } /* end if */
- ENVPTR->DeleteLocalRef(ENVPAR o);
- } /* end if */
- HDfree(member_name[i]);
- } /* end for */
- } /* end if */
- } /* end if */
- } /* end if */
- } /* end else */
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_split
- * Signature: (JLjava/lang/String;JLjava/lang/String;J)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
- (JNIEnv *env, jclass clss, jlong fapl_id, jstring metaext, jlong meta_pl_id, jstring rawext, jlong raw_pl_id)
-{
- herr_t retVal = -1;
- const char *mstr;
- const char *rstr;
-
- PIN_JAVA_STRING_TWO(metaext, mstr, rawext, rstr);
- if (mstr != NULL && rstr != NULL) {
- retVal = H5Pset_fapl_split((hid_t)fapl_id, mstr, (hid_t)meta_pl_id, rstr, (hid_t)raw_pl_id);
-
- UNPIN_JAVA_STRING_TWO(metaext, mstr, rawext, rstr);
-
- if (retVal < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_meta_block_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- long sz = (long)size;
-
- if (H5Pset_meta_block_size((hid_t)plist, (hsize_t)sz) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_meta_block_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- hsize_t s;
-
- if (H5Pget_meta_block_size((hid_t)plist, &s) < 0)
- h5libraryError(env);
-
- return (jlong)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sieve_buf_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
- (JNIEnv *env, jclass clss, jlong plist, jlong size)
-{
- size_t sz = (size_t)size;
-
- if (H5Pset_sieve_buf_size((hid_t)plist, (size_t)sz) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sieve_buf_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- size_t s;
-
- if (H5Pget_sieve_buf_size((hid_t)plist, &s) < 0)
- h5libraryError(env);
-
- return (jlong)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_file_cache_size
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
- (JNIEnv *env, jclass clss, jlong plist, jint size)
-{
- unsigned sz = (unsigned)size;
-
- if (H5Pset_elink_file_cache_size((hid_t)plist, (unsigned)sz) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_file_cache_size
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
- (JNIEnv *env, jclass clss, jlong plist)
-{
- unsigned s;
-
- if (H5Pget_elink_file_cache_size((hid_t)plist, &s) < 0)
- h5libraryError(env);
-
- return (jint)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size */
-
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_mdc_config
- * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
- */
-JNIEXPORT jobject JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
- (JNIEnv *env, jclass clss, jlong plist)
-{
- H5AC_cache_config_t cacheinfo;
- herr_t status = -1;
- jvalue args[30];
- jstring j_str = NULL;
- jobject ret_obj = NULL;
-
- HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t));
- cacheinfo.version = H5AC__CURR_CACHE_CONFIG_VERSION;
-
- status = H5Pget_mdc_config((hid_t)plist, &cacheinfo);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- args[0].i = cacheinfo.version;
- args[1].z = cacheinfo.rpt_fcn_enabled;
- args[2].z = cacheinfo.open_trace_file;
- args[3].z = cacheinfo.close_trace_file;
- if (cacheinfo.trace_file_name != NULL) {
- j_str = ENVPTR->NewStringUTF(ENVPAR cacheinfo.trace_file_name);
- } /* end if */
- args[4].l = j_str;
- args[5].z = cacheinfo.evictions_enabled;
- args[6].z = cacheinfo.set_initial_size;
- args[7].j = (jlong)cacheinfo.initial_size;
- args[8].d = cacheinfo.min_clean_fraction;
- args[9].j = (jlong)cacheinfo.max_size;
- args[10].j = (jlong)cacheinfo.min_size;
- args[11].j = cacheinfo.epoch_length;
- args[12].i = cacheinfo.incr_mode;
- args[13].d = cacheinfo.lower_hr_threshold;
- args[14].d = cacheinfo.increment;
- args[15].z = cacheinfo.apply_max_increment;
- args[16].j = (jlong)cacheinfo.max_increment;
- args[17].i = cacheinfo.flash_incr_mode;
- args[18].d = cacheinfo.flash_multiple;
- args[19].d = cacheinfo.flash_threshold;
- args[20].i = cacheinfo.decr_mode;
- args[21].d = cacheinfo.upper_hr_threshold;
- args[22].d = cacheinfo.decrement;
- args[23].z = cacheinfo.apply_max_decrement;
- args[24].j = (jlong)cacheinfo.max_decrement;
- args[25].i = cacheinfo.epochs_before_eviction;
- args[26].z = cacheinfo.apply_empty_reserve;
- args[27].d = cacheinfo.empty_reserve;
- args[28].j = (jlong)cacheinfo.dirty_bytes_threshold;
- args[29].i = cacheinfo.metadata_write_strategy;
- CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5AC_cache_config_t", "(IZZZLjava/lang/String;ZZJDJJJIDDZJIDDIDDZJIZDJI)V", args);
- } /* end else */
- return ret_obj;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_mdc_config
- * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
- (JNIEnv *env, jclass clss, jlong plist, jobject cache_config)
-{
- herr_t status = -1;
- jclass cls;
- jfieldID fid;
- jstring j_str;
- const char *str;
- H5AC_cache_config_t cacheinfo;
-
- cls = ENVPTR->GetObjectClass(ENVPAR cache_config);
- fid = ENVPTR->GetFieldID(ENVPAR cls, "version", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: version");
- return;
- } /* end if */
- cacheinfo.version = ENVPTR->GetIntField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading version failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "rpt_fcn_enabled", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: rpt_fcn_enabled");
- return;
- } /* end if */
- cacheinfo.rpt_fcn_enabled = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading rpt_fcn_enabled failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "open_trace_file", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: open_trace_file");
- return;
- } /* end if */
- cacheinfo.open_trace_file = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading open_trace_file failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "close_trace_file", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: close_trace_file");
- return;
- } /* end if */
- cacheinfo.close_trace_file = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading close_trace_file failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "trace_file_name", "Ljava/lang/String;");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: trace_file_name");
- return;
- } /* end if */
- j_str = (jstring)ENVPTR->GetObjectField(ENVPAR cache_config, fid);
- str = ENVPTR->GetStringUTFChars(ENVPAR j_str, NULL);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Pset_mdc_config: out of memory trace_file_name");
- return;
- } /* end if */
- HDstrncpy(cacheinfo.trace_file_name, str, 1025);
- ENVPTR->ReleaseStringUTFChars(ENVPAR j_str, str);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading trace_file_name failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "evictions_enabled", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: evictions_enabled");
- return;
- } /* end if */
- cacheinfo.evictions_enabled = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading evictions_enabled failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "set_initial_size", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: set_initial_size");
- return;
- } /* end if */
- cacheinfo.set_initial_size = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading set_initial_size failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "initial_size", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: initial_size");
- return;
- } /* end if */
- cacheinfo.initial_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading initial_size failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "min_clean_fraction", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: min_clean_fraction");
- return;
- } /* end if */
- cacheinfo.min_clean_fraction = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading min_clean_fraction failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "max_size", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: max_size");
- return;
- } /* end if */
- cacheinfo.max_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading max_size failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "min_size", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: min_size");
- return;
- } /* end if */
- cacheinfo.min_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading min_size failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "epoch_length", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: epoch_length");
- return;
- }
- cacheinfo.epoch_length = (long int)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading epoch_length failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "incr_mode", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: incr_mode");
- return;
- } /* end if */
- cacheinfo.incr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_incr_mode) */
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading incr_mode failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "lower_hr_threshold", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: lower_hr_threshold");
- return;
- } /* end if */
- cacheinfo.lower_hr_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading lower_hr_threshold failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "increment", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: increment");
- return;
- } /* end if */
- cacheinfo.increment = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading increment failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_max_increment", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: apply_max_increment");
- return;
- } /* end if */
- cacheinfo.apply_max_increment = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_max_increment failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "max_increment", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: max_increment");
- return;
- } /* end if */
- cacheinfo.max_increment = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading max_increment failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_incr_mode", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: flash_incr_mode");
- return;
- } /* end if */
- cacheinfo.flash_incr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_flash_incr_mode) */
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_incr_mode failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_multiple", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: flash_multiple");
- return;
- } /* end if */
- cacheinfo.flash_multiple = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_multiple failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_threshold", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: flash_threshold");
- return;
- } /* end if */
- cacheinfo.flash_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_threshold failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "decr_mode", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: decr_mode");
- return;
- } /* end if */
- cacheinfo.decr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_decr_mode) */
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading decr_mode failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "upper_hr_threshold", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: upper_hr_threshold");
- return;
- } /* end if */
- cacheinfo.upper_hr_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading upper_hr_threshold failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "decrement", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: decrement");
- return;
- } /* end if */
- cacheinfo.decrement = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading decrement failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_max_decrement", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: apply_max_decrement");
- return;
- } /* end if */
- cacheinfo.apply_max_decrement = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_max_decrement failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "max_decrement", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: max_decrement");
- return;
- } /* end if */
- cacheinfo.max_decrement = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading max_decrement failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "epochs_before_eviction", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: epochs_before_eviction");
- return;
- } /* end if */
- cacheinfo.epochs_before_eviction = ENVPTR->GetIntField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading epochs_before_eviction failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_empty_reserve", "Z");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: apply_empty_reserve");
- return;
- } /* end if */
- cacheinfo.apply_empty_reserve = ENVPTR->GetBooleanField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_empty_reserve failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "empty_reserve", "D");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: empty_reserve");
- return;
- } /* end if */
- cacheinfo.empty_reserve = ENVPTR->GetDoubleField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading empty_reserve failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "dirty_bytes_threshold", "J");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: dirty_bytes_threshold");
- return;
- } /* end if */
- cacheinfo.dirty_bytes_threshold = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading dirty_bytes_threshold failed");
- return;
- } /* end if */
-
- fid = ENVPTR->GetFieldID(ENVPAR cls, "metadata_write_strategy", "I");
- if(fid == 0) {
- h5badArgument(env, "H5Pset_mdc_config: metadata_write_strategy");
- return;
- } /* end if */
- cacheinfo.metadata_write_strategy = ENVPTR->GetIntField(ENVPAR cache_config, fid);
- if(ENVPTR->ExceptionOccurred(ENVONLY)) {
- h5JNIFatalError(env, "H5Pset_mdc_config: loading metadata_write_strategy failed");
- } /* end if */
- else {
- status = H5Pset_mdc_config((hid_t)plist, &cacheinfo);
-
- if (status < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk_cache
- * Signature: (JJJD)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
- (JNIEnv *env, jclass clss, jlong dapl, jlong rdcc_nslots,
- jlong rdcc_nbytes, jdouble rdcc_w0)
-{
- if (H5Pset_chunk_cache((hid_t)dapl, (size_t)rdcc_nslots, (size_t)rdcc_nbytes, (double) rdcc_w0) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk_cache
- * Signature: (J[J[J[D)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
- (JNIEnv *env, jclass clss, jlong dapl, jlongArray rdcc_nslots,
- jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
-{
- herr_t status = -1;
- jint mode;
- jdouble *w0Array = (jdouble *)NULL;
- jlong *rdcc_nslotsArray = (jlong *)NULL;
- jlong *nbytesArray = (jlong *)NULL;
- jboolean isCopy;
-
- if (rdcc_w0 != NULL) {
- w0Array = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR rdcc_w0, &isCopy);
- if (w0Array == NULL) {
- h5JNIFatalError(env, "H5Pget_chunk_cache: w0_array array not pinned");
- return;
- } /* end if */
- } /* end else */
-
- if (rdcc_nslots != NULL) {
- rdcc_nslotsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nslots, &isCopy);
- if (rdcc_nslotsArray == NULL) {
- /* exception -- out of memory */
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT);
- } /* end if */
- h5JNIFatalError(env, "H5Pget_chunk_cache: rdcc_nslots array not pinned");
- return;
- } /* end if */
- } /* end else */
-
- if (rdcc_nbytes != NULL) {
- nbytesArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nbytes, &isCopy);
- if (nbytesArray == NULL) {
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT);
- } /* end if */
- if (rdcc_nslotsArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nslots, rdcc_nslotsArray, JNI_ABORT);
- } /* end if */
- h5JNIFatalError(env, "H5Pget_chunk_cache: nbytesArray array not pinned");
- return;
- } /* end if */
- } /* end else */
-
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- long long rdcc_nslots_temp = *(rdcc_nslotsArray);
- size_t rdcc_nslots_t = (size_t)rdcc_nslots_temp;
- long long nbytes_temp = *(nbytesArray);
- size_t nbytes_t = (size_t)nbytes_temp;
-
- status = H5Pget_chunk_cache((hid_t)dapl, &rdcc_nslots_t, &nbytes_t, (double *)w0Array);
-
- *rdcc_nslotsArray = (jlong)rdcc_nslots_t;
- *nbytesArray = (jlong)nbytes_t;
- } /* end direct cast special handling */
-
- if (status < 0) {
- mode = JNI_ABORT;
- } /* end if */
- else {
- mode = 0; /* commit and free */
- } /* end else */
-
- if (rdcc_nslotsArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nslots, rdcc_nslotsArray, mode);
- }
- /* end if */
- if (nbytesArray != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nbytes, nbytesArray, mode);
- } /* end if */
-
- if (w0Array != NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, mode);
- } /* end if */
-
- if (status < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_obj_track_times
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
- (JNIEnv *env, jclass clss, jlong objplid)
-{
- hbool_t track_times;
-
- if (H5Pget_obj_track_times((hid_t)objplid, &track_times) < 0) {
- h5libraryError(env);
- return JNI_FALSE;
- } /* end if */
- if (track_times == 1) {
- return JNI_TRUE;
- } /* end if */
- return JNI_FALSE;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_obj_track_times
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
- (JNIEnv *env, jclass clss, jlong objplid, jboolean track_times)
-{
- hbool_t track;
-
- if (track_times == JNI_TRUE) {
- track = 1;
- } /* end if */
- else {
- track = 0;
- } /* end else */
-
- if (H5Pset_obj_track_times((hid_t)objplid, track) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_char_encoding
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
- (JNIEnv *env, jclass clss, jlong acpl)
-{
- H5T_cset_t encoding;
-
- if (H5Pget_char_encoding((hid_t)acpl, &encoding) < 0)
- h5libraryError(env);
-
- return encoding;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_char_encoding
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
- (JNIEnv *env, jclass clss, jlong acpl, jint encoding)
-{
- if (H5Pset_char_encoding((hid_t)acpl, (H5T_cset_t)encoding) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual
- * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id,
- jstring src_file_name, jstring src_dset_name, jlong src_space_id)
-{
- herr_t retVal = -1;
- const char *fstr;
- const char *dstr;
-
- PIN_JAVA_STRING_TWO(src_file_name, fstr, src_dset_name, dstr);
- if (fstr != NULL && dstr != NULL) {
- retVal = H5Pset_virtual((hid_t)dcpl_id, (hid_t)vspace_id, fstr, dstr, (hid_t)src_space_id);
-
- UNPIN_JAVA_STRING_TWO(src_file_name, fstr, src_dset_name, dstr);
-
- if (retVal < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_count
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
- (JNIEnv *env, jclass clss, jlong dcpl_id)
-{
- size_t s;
-
- if (H5Pget_virtual_count((hid_t)dcpl_id, &s) < 0)
- h5libraryError(env);
-
- return (jlong)s;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_vspace
- * Signature: (JJ)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
-{
- hid_t space_id = -1;
-
- space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t)index);
- if (space_id < 0)
- h5libraryError(env);
-
- return (jlong)space_id;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_srcspace
- * Signature: (JJ)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
-{
- hid_t space_id = -1;
-
- space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t)index);
- if (space_id < 0)
- h5libraryError(env);
-
- return (jlong)space_id;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_filename
- * Signature: (JJ)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
-{
- char *fname;
- ssize_t buf_size;
- ssize_t status;
- jstring str = NULL;
-
- /* get the length of the filename */
- buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, NULL, 0);
- if (buf_size < 0) {
- h5badArgument( env, "H5Pget_virtual_filename: buf_size < 0");
- } /* end if */
- else if (buf_size >= 0) {
- buf_size++; /* add extra space for the null terminator */
- fname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (fname == NULL) {
- h5outOfMemory( env, "H5Pget_virtual_filename: malloc failed");
- } /* end if */
- else {
- status = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, fname, (size_t)buf_size);
-
- if (status >= 0) {
- str = ENVPTR->NewStringUTF(ENVPAR fname);
- HDfree(fname);
- if (str == NULL)
- h5JNIFatalError( env, "H5Pget_virtual_filename: return string not allocated");
- } /* end if */
- else {
- HDfree(fname);
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else if */
-
- return (jstring)str;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_dsetname
- * Signature: (JJ)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
- (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index)
-{
- char *dname;
- ssize_t buf_size;
- ssize_t status;
- jstring str = NULL;
-
- /* get the length of the filename */
- buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, NULL, 0);
- if (buf_size < 0) {
- h5badArgument( env, "H5Pget_virtual_dsetname: buf_size < 0");
- } /* end if */
- else if (buf_size > 0) {
- buf_size++; /* add extra space for the null terminator */
- dname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (dname == NULL) {
- h5outOfMemory( env, "H5Pget_virtual_dsetname: malloc failed");
- } /* end if */
- else {
- status = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, dname, (size_t)buf_size);
-
- if (status >= 0) {
- str = ENVPTR->NewStringUTF(ENVPAR dname);
- HDfree(dname);
- if (str == NULL)
- h5JNIFatalError( env, "H5Pget_virtual_dsetname: return string not allocated");
- } /* end if */
- else {
- HDfree(dname);
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else if */
- return (jstring)str;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_view
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
- (JNIEnv *env, jclass clss, jlong dapl_id)
-{
- H5D_vds_view_t virtual_view;
-
- if (H5Pget_virtual_view((hid_t)dapl_id, &virtual_view) < 0)
- h5libraryError(env);
-
- return (jint)virtual_view;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_view
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
- (JNIEnv *env, jclass clss, jlong dapl_id, jint view)
-{
- if (H5Pset_virtual_view((hid_t)dapl_id, (H5D_vds_view_t)view) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_printf_gap
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
- (JNIEnv *env, jclass clss, jlong dapl_id)
-{
- hsize_t gap_size;
-
- if (H5Pget_virtual_printf_gap((hid_t)dapl_id, &gap_size) < 0)
- h5libraryError(env);
-
- return (jlong)gap_size;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap */
+} /* end Java_hdf_hdf5lib_H5__1H5Pclose_1class */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_printf_gap
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
- (JNIEnv *env, jclass clss, jlong dapl_id, jlong gap_size)
+static herr_t
+H5P_cls_create_cb
+ (hid_t prop_id, void *create_data)
{
- if (H5Pset_virtual_printf_gap((hid_t)dapl_id, (hsize_t)gap_size) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap */
+ jmethodID mid;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jint status = -1;
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy
- * Signature: (J[Z[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
- (JNIEnv *env, jclass clss, jlong fcpl_id, jbooleanArray persist, jlongArray threshold)
-{
- herr_t status = -1;
- H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */
- jlong *thethresholdArray = NULL;
- jboolean *thepersistArray = NULL;
- jboolean isCopy;
-
- if (persist) {
- thepersistArray = (jboolean*)ENVPTR->GetBooleanArrayElements(ENVPAR persist, &isCopy);
- if (thepersistArray == NULL) {
- h5JNIFatalError(env, "H5Pget_file_space: persist not pinned");
- return -1;
- }
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_cls_create_cb: failed to attach current thread to JVM");
}
- if (threshold) {
- thethresholdArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR threshold, &isCopy);
- if (thethresholdArray == NULL) {
- if (persist) ENVPTR->ReleaseBooleanArrayElements(ENVPAR persist, thepersistArray, JNI_ABORT);
- h5JNIFatalError(env, "H5Pget_file_space: threshold not pinned");
- return -1;
- } /* end if */
- } /* end if */
-
- status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t*)thepersistArray, (hsize_t*)thethresholdArray);
-
- if (status < 0) {
- if (persist) ENVPTR->ReleaseBooleanArrayElements(ENVPAR persist, thepersistArray, JNI_ABORT);
- if (threshold) ENVPTR->ReleaseLongArrayElements(ENVPAR threshold, thethresholdArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- if (persist) ENVPTR->ReleaseBooleanArrayElements(ENVPAR persist, thepersistArray, 0);
- if (threshold) ENVPTR->ReleaseLongArrayElements(ENVPAR threshold, thethresholdArray, 0);
- } /* end else */
- return (jint)thestrategy;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy_persist
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
- (JNIEnv *env, jclass clss, jlong fcpl_id)
-{
- herr_t status = -1;
- hbool_t thepersist = FALSE;
-
- status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, &thepersist, NULL);
-
- if (status < 0)
- h5libraryError(env);
-
- return (jboolean)thepersist;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy_threshold
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
- (JNIEnv *env, jclass clss, jlong fcpl_id)
-{
- herr_t status = -1;
- hsize_t thethreshold;
-
- status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, NULL, &thethreshold);
-
- if (status < 0)
- h5libraryError(env);
-
- return (jlong)thethreshold;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1threshold */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_file_space_strategy
- * Signature: (JIZJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
- (JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, jboolean persist, jlong threshold)
-{
- if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist, (hsize_t)threshold) < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_file_space_strategy */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, create_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_file_space_page_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
- (JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size)
-{
- if (H5Pset_file_space_page_size((hid_t)fcpl_id, (hsize_t)fsp_size) < 0)
- h5libraryError(env);
-}
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_create_func_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_page_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
- (JNIEnv *env, jclass clss, jlong fcpl_id)
-{
- hsize_t fsp_size = 0;
- if (H5Pget_file_space_page_size((hid_t)fcpl_id, &fsp_size) < 0)
- h5libraryError(env);
- return (jlong)fsp_size;
-}
+ status = CBENVPTR->CallIntMethod(CBENVONLY, create_callback, mid, prop_id, create_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-static herr_t
-H5P_cls_create_cb
- (hid_t prop_id, void *create_data)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR create_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_create_func_t;)I");
- if (mid != 0) {
- /* fprintf(stderr, "JNI H5P_cls_create_func_cb execute\n"); fflush(stderr); */
- status = CBENVPTR->CallIntMethod(CBENVPAR create_callback, mid, prop_id, create_data);
- /* fprintf(stderr, "\nJNI H5P_cls_create_func_cb status: %d\n", status); fflush(stderr); */
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
} /* end H5P_cls_create_cb */
@@ -4991,966 +747,332 @@ static herr_t
H5P_cls_copy_cb
(hid_t new_prop_id, hid_t old_prop_id, void *copy_data)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR copy_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JJLhdf/hdf5lib/callbacks/H5P_cls_copy_func_t;)I");
- if (mid != 0) {
- status = CBENVPTR->CallIntMethod(CBENVPAR copy_callback, mid, new_prop_id, old_prop_id, copy_data);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_cls_copy_cb */
-
-static herr_t
-H5P_cls_close_cb
- (hid_t prop_id, void *close_data)
-{
- JNIEnv *cbenv;
- jint status = -1;
+ JNIEnv *cbenv = NULL;
jclass cls;
- jmethodID mid;
-
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR close_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_close_func_t;)I");
- if (mid != 0) {
- status = CBENVPTR->CallIntMethod(CBENVPAR close_callback, mid, prop_id, close_data);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_cls_close_cb */
+ jint status = -1;
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_mdc_log_options
- * Signature: (JZLjava/lang/String;Z)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
- (JNIEnv *env, jclass clss, jlong fapl_id, jboolean is_enabled, jstring location, jboolean start_on_access)
-{
- herr_t retVal = -1;
- const char *lstr;
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_cls_copy_cb: failed to attach current thread to JVM");
+ }
- PIN_JAVA_STRING(location, lstr);
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, copy_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, lstr, (hbool_t)start_on_access);
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JJLhdf/hdf5lib/callbacks/H5P_cls_copy_func_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(location, lstr);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, copy_callback, mid, new_prop_id, old_prop_id, copy_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (retVal < 0) {
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options */
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_mdc_log_options
- * Signature: (J[Z)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
- (JNIEnv *env, jclass clss, jlong fapl_id, jbooleanArray mdc_log_options)
-{
- hbool_t is_enabled;
- hbool_t start_on_access;
- jboolean *mdc_log_options_ptr;
- char *lname;
- size_t location_size;
- ssize_t status;
- jstring str = NULL;
- jint size;
- jboolean isCopy;
-
- if (mdc_log_options == NULL) {
- h5nullArgument(env, "H5Fget_mdc_log_options: mdc_log_options is NULL");
- } /* end if */
- else {
- size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_log_options);
- if (size < 2) {
- h5badArgument(env, "H5Fget_mdc_log_options: length of mdc_log_options < 2.");
- } /* end if */
- else {
- /* get the length of the filename */
- H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, NULL, &location_size, &start_on_access);
- if (location_size == 0) {
- h5badArgument(env, "H5Pget_mdc_log_options: location_size is 0");
- }/* end if */
- else if (location_size > 0) {
- location_size++; /* add extra space for the null terminator */
- lname = (char *)HDmalloc(sizeof(char) * location_size);
- if (lname == NULL) {
- h5outOfMemory(env, "H5Pget_mdc_log_options: malloc failed");
- } /* end if */
- else {
- status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, &start_on_access);
-
- if (status < 0) {
- HDfree(lname);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR lname);
- HDfree(lname);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Pget_mdc_log_options: return string not allocated");
- } /* end if */
- else {
- mdc_log_options_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_log_options, &isCopy);
- mdc_log_options_ptr[0] = (jboolean)is_enabled;
- mdc_log_options_ptr[1] = (jboolean)start_on_access;
- ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_log_options, mdc_log_options_ptr, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else if*/
- } /* end else */
- } /* end else */
-
- return (jstring)str;
-} /* end if */
+ return (herr_t)status;
+} /* end H5P_cls_copy_cb */
static herr_t
-H5D_append_cb
- (hid_t dataset_id, hsize_t *cur_dims, void *cb_data)
+H5P_cls_close_cb
+ (hid_t prop_id, void *close_data)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
- jlongArray cur_dimsArray;
- cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
+ JNIEnv *cbenv = NULL;
+ jclass cls;
+ jint status = -1;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
- JVMPTR->DetachCurrentThread(JVMPAR);
- return -1;
- } /* end if */
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(J[JLhdf/hdf5lib/callbacks/H5D_append_t;)I");
- if (mid != 0) {
- if (cur_dims != NULL) {
- cur_dimsArray = CBENVPTR->NewLongArray(CBENVPAR 2);
- if (cur_dimsArray != NULL) {
- CBENVPTR->SetLongArrayRegion(CBENVPAR cur_dimsArray, 0, 2, (const jlong *)cur_dims);
-
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, dataset_id, cur_dims, op_data);
- }
- }
- }
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_cls_close_cb: failed to attach current thread to JVM");
+ }
- return (herr_t)status;
-} /* end H5D_append_cb */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, close_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_append_flush
- * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
- (JNIEnv *env, jclass clss, jlong plist_id, jint ndims, jlongArray boundary, jobject callback_op, jobject op_data)
-{
- herr_t status = -1;
- cb_wrapper wrapper = {callback_op, op_data};
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_close_func_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- ENVPTR->GetJavaVM(ENVPAR &jvm);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, close_callback, mid, prop_id, close_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (op_data == NULL) {
- h5nullArgument(env, "H5Pset_append_flush: op_data is NULL");
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Pset_append_flush: callback_op is NULL");
- } /* end if */
- else {
- status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t*)boundary, (H5D_append_cb_t)H5D_append_cb, (void*)&wrapper);
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if (status < 0)
- h5libraryError(env);
- } /* end else */
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1append_1flush */
+ return (herr_t)status;
+} /* end H5P_cls_close_cb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pcreate_class_nocb
- * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb
- (JNIEnv *env, jclass clss, jlong parent_class, jstring name)
+static herr_t
+H5P_prp_create_cb
+ (const char *name, size_t size, void *value)
{
- hid_t class_id = -1;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- class_id = H5Pcreate_class((hid_t)parent_class, cstr, NULL, NULL, NULL, NULL, NULL, NULL);
-
- UNPIN_JAVA_STRING(name, cstr);
+ jmethodID mid;
+ jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if (class_id < 0)
- h5libraryError(env);
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_create_cb: failed to attach current thread to JVM");
}
- return (jlong)class_id;
-} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pcreate_class
- * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pcreate_1class
- (JNIEnv *env, jclass clss, jlong parent_class, jstring name, jobject create_op,
- jobject create_data, jobject copy_op, jobject copy_data, jobject close_op, jobject close_data)
-{
- hid_t class_id = -1;
- const char *cstr;
- copy_callback = copy_op;
- close_callback = close_op;
- create_callback = create_op;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- class_id = H5Pcreate_class((hid_t)parent_class, cstr, (H5P_cls_create_func_t)H5P_cls_create_cb, (void*) create_data,
- (H5P_cls_copy_func_t)H5P_cls_copy_cb, (void*) copy_data, (H5P_cls_close_func_t)H5P_cls_close_cb, (void*) close_data);
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, create_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(name, cstr);
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(Ljava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (class_id < 0)
- h5libraryError(env);
- }
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return (jlong)class_id;
-} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class */
+ status = CBENVPTR->CallIntMethod(CBENVONLY, create_callback, mid, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-static herr_t
-H5P_prp_create_cb
- (const char *name, size_t size, void *value)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR create_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR create_callback, mid, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
} /* end H5P_prp_create_cb */
static herr_t
-H5P_prp_copy_cb
- (const char *name, size_t size, void *value)
+H5P_prp_set_cb
+ (hid_t prop_id, const char *name, size_t size, void *value)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR copy_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR copy_callback, mid, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_prp_copy_cb */
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_set_cb: failed to attach current thread to JVM");
+ }
-static herr_t
-H5P_prp_close_cb
- (const char *name, size_t size, void *value)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, set_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR close_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR close_callback, mid, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_prp_close_cb */
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-static int
-H5P_prp_compare_cb
- (void *value1, void *value2, size_t size)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, set_callback, mid, prop_id, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR compare_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "([B[BJ)I");
- if (mid != 0) {
- status = CBENVPTR->CallIntMethod(CBENVPAR compare_callback, mid, value1, value2, size);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
-} /* end H5P_prp_compare_cb */
+} /* end H5P_prp_set_cb */
static herr_t
H5P_prp_get_cb
(hid_t prop_id, const char *name, size_t size, void *value)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR get_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR get_callback, mid, prop_id, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_prp_get_cb */
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_get_cb: failed to attach current thread to JVM");
+ }
-static herr_t
-H5P_prp_set_cb
- (hid_t prop_id, const char *name, size_t size, void *value)
-{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
- jmethodID mid;
- jstring str;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, get_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+ status = CBENVPTR->CallIntMethod(CBENVONLY, get_callback, mid, prop_id, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR set_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR set_callback, mid, prop_id, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
-} /* end H5P_prp_set_cb */
+} /* end H5P_prp_get_cb */
static herr_t
H5P_prp_delete_cb
(hid_t prop_id, const char *name, size_t size, void *value)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
- cls = CBENVPTR->GetObjectClass(CBENVPAR delete_callback);
- if (cls != 0) {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I");
- if (mid != 0) {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
- status = CBENVPTR->CallIntMethod(CBENVPAR delete_callback, mid, prop_id, str, size, value);
- } /* end if */
- } /* end if */
- } /* end if */
- JVMPTR->DetachCurrentThread(JVMPAR);
- return (herr_t)status;
-} /* end H5P_prp_delete_cb */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pregister2_nocb
- * Signature: (JLjava/lang/String;J[B)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pregister2_1nocb
- (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value)
-{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy2;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Pregister2: buf not pinned");
- } /* end if */
- else {
- status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, NULL, NULL, NULL, NULL, NULL, NULL, NULL);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0);
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, cstr);
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_delete_cb: failed to attach current thread to JVM");
}
-} /* end Java_hdf_hdf5lib_H5_H5Pregister2_1nocb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pregister2
- * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pregister2
- (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size,
- jbyteArray def_value, jobject prp_create, jobject prp_set, jobject prp_get, jobject prp_delete,
- jobject prp_copy, jobject prp_cmp, jobject prp_close)
-{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy2;
- const char *cstr;
- copy_callback = prp_copy;
- close_callback = prp_close;
- create_callback = prp_create;
- compare_callback = prp_cmp;
- set_callback = prp_set;
- get_callback = prp_get;
- delete_callback = prp_delete;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, delete_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Pregister2: buf not pinned");
- } /* end if */
- else {
- status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, (H5P_prp_create_func_t)H5P_prp_create_cb,
- (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb,
- (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0);
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, cstr);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pregister2 */
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pinsert2_nocb
- * Signature: (JLjava/lang/String;J[B)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb
- (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value)
-{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy2;
- const char *cstr;
-
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2);
- if (buffP == NULL) {
- h5JNIFatalError(env, "H5Pinsert2: buf not pinned");
- } /* end if */
- else {
- status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, NULL, NULL, NULL, NULL, NULL, NULL);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0);
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, cstr);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pinsert2 */
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, delete_callback, mid, prop_id, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pinsert2
- * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pinsert2
- (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size,
- jbyteArray def_value, jobject prp_set, jobject prp_get, jobject prp_delete,
- jobject prp_copy, jobject prp_cmp, jobject prp_close)
-{
- herr_t status = -1;
- jbyte *buffP;
- jboolean isCopy2;
- const char *cstr;
- copy_callback = prp_copy;
- close_callback = prp_close;
- compare_callback = prp_cmp;
- set_callback = prp_set;
- get_callback = prp_get;
- delete_callback = prp_delete;
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- PIN_JAVA_STRING(name, cstr);
- if (cstr != NULL) {
- buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2);
- if (buffP == NULL) {
- UNPIN_JAVA_STRING(name, cstr);
- h5JNIFatalError(env, "H5Pinsert2: buf not pinned");
- } /* end if */
- else {
- status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP,
- (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb,
- (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0);
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, cstr);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pinsert2 */
+ return (herr_t)status;
+} /* end H5P_prp_delete_cb */
static herr_t
-H5P_iterate_cb
- (hid_t prop_id, const char *name, void *cb_data)
+H5P_prp_copy_cb
+ (const char *name, size_t size, void *value)
{
- JNIEnv *cbenv;
- jint status = -1;
- jclass cls;
jmethodID mid;
jstring str;
- cb_wrapper *wrapper = (cb_wrapper *)cb_data;
- void *op_data = (void *)wrapper->op_data;
- jobject visit_callback = wrapper->visit_callback;
-
- /* fprintf(stderr, "\nJNI H5P_iterate_cb entered\n"); fflush(stderr); */
- if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
- /* fprintf(stderr, "\nJNI H5P_iterate_cb error: AttachCurrentThread failed\n"); fflush(stderr); */
- JVMPTR->DetachCurrentThread(JVMPAR);
- } /* end if */
- else {
- cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
- if (cls == 0) {
- /* fprintf(stderr, "\nJNI H5P_iterate_cb error: GetObjectClass failed\n"); fflush(stderr); */
- JVMPTR->DetachCurrentThread(JVMPAR);
- } /* end if */
- else {
- mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/callbacks/H5P_iterate_t;)I");
- if (mid == 0) {
- /* fprintf(stderr, "\nJNI H5P_iterate_cb error: GetMethodID failed\n"); fflush(stderr); */
- JVMPTR->DetachCurrentThread(JVMPAR);
- } /* end if */
- else {
- str = CBENVPTR->NewStringUTF(CBENVPAR name);
-
- /* fprintf(stderr, "JNI H5P_iterate_cb execute\n"); fflush(stderr); */
- status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, prop_id, str, op_data);
- /* fprintf(stderr, "\nJNI H5P_iterate_cb status: %d\n", status); fflush(stderr); */
- } /* end else */
- } /* end else */
- } /* end else */
-
- JVMPTR->DetachCurrentThread(JVMPAR);
- /* fprintf(stderr, "\nJNI H5P_iterate_cb leave\n"); fflush(stderr); */
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- return status;
-} /* end H5P_iterate_cb */
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_copy_cb: failed to attach current thread to JVM");
+ }
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Piterate
- * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Piterate
- (JNIEnv *env, jclass clss, jlong prop_id, jintArray idx, jobject callback_op, jobject op_data)
-{
- herr_t status = -1;
- jint *theArray = NULL;
- jboolean isCopy;
- cb_wrapper wrapper = {callback_op, op_data};
-
- ENVPTR->GetJavaVM(ENVPAR &jvm);
-
- if (op_data == NULL) {
- h5nullArgument(env, "H5Piterate: op_data is NULL");
- } /* end if */
- else if (callback_op == NULL) {
- h5nullArgument(env, "H5Piterate: callback_op is NULL");
- } /* end else if */
- else {
- if (idx == NULL) {
- status = H5Piterate((hid_t)prop_id, NULL, (H5P_iterate_t)H5P_iterate_cb, (void*)&wrapper);
- } /* end if */
- else {
- theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR idx, &isCopy);
- if (theArray == NULL) {
- h5JNIFatalError(env, "H5Piterate: idx not pinned");
- } /* end if */
- else
- status = H5Piterate((hid_t)prop_id, (int*)&theArray[0], (H5P_iterate_t)H5P_iterate_cb, (void*)&wrapper);
- } /* end else */
-
- if (status < 0) {
- if(idx)
- ENVPTR->ReleaseIntArrayElements(ENVPAR idx, theArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else if (idx)
- ENVPTR->ReleaseIntArrayElements(ENVPAR idx, theArray, 0);
- } /* end else */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, copy_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return (jint)status;
-} /* end Java_hdf_hdf5lib_H5_H5Piterate */
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(Ljava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_metadata_read_attempts
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
- (JNIEnv *env, jclass clss, jlong plist_id)
-{
- unsigned attempts;
- if (H5Pget_metadata_read_attempts((hid_t)plist_id, &attempts) < 0)
- h5libraryError(env);
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return (jlong) attempts;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts */
+ status = CBENVPTR->CallIntMethod(CBENVONLY, copy_callback, mid, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_metadata_read_attempts
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
- (JNIEnv *env, jclass clss, jlong plist_id, jlong attempts)
-{
- if (attempts <= 0) {
- h5badArgument(env, "H5Pset_metadata_read_attempts: attempts <= 0");
- } /* end if */
- else {
- if(H5Pset_metadata_read_attempts((hid_t)plist_id, (unsigned)attempts) < 0)
- h5libraryError(env);
- } /* end else */
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts */
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
+ return (herr_t)status;
+} /* end H5P_prp_copy_cb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_prefix
- * Signature: (JLjava/lang/String;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
- (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
+static int
+H5P_prp_compare_cb
+ (void *value1, void *value2, size_t size)
{
- herr_t retVal = -1;
- const char *aName;
-
- PIN_JAVA_STRING(prefix, aName);
- if (aName != NULL) {
- retVal = H5Pset_virtual_prefix((hid_t)dapl_id, aName);
-
- UNPIN_JAVA_STRING(prefix, aName);
+ jmethodID mid;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if(retVal < 0)
- h5libraryError(env);
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_compare_cb: failed to attach current thread to JVM");
}
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_prefix
- * Signature: (J)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
- (JNIEnv *env, jclass clss, jlong dapl_id)
-{
- size_t size = 0;
- char *pre;
- jlong prefix_size = -1;
- jstring str = NULL;
-
- prefix_size = (jlong)H5Pget_virtual_prefix((hid_t)dapl_id, (char*)NULL, size);
- if(prefix_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- size = (size_t)prefix_size + 1;/* add extra space for the null terminator */
- pre = (char*)HDmalloc(sizeof(char)*size);
- if (pre == NULL) {
- h5outOfMemory(env, "H5Pget_virtual_prefix: malloc failed ");
- } /* end if */
- else {
- prefix_size = (jlong)H5Pget_virtual_prefix((hid_t)dapl_id, (char*)pre, size);
-
- if (prefix_size >= 0) {
- str = ENVPTR->NewStringUTF(ENVPAR pre);
- HDfree(pre);
- if (str == NULL)
- h5JNIFatalError( env, "H5Pget_virtual_prefix: return string not allocated");
- } /* end if */
- else {
- HDfree(pre);
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jstring)str;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix */
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_efile_prefix
- * Signature: (JLjava/lang/String;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
- (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
-{
- herr_t retVal = -1;
- const char *aName;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, compare_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- PIN_JAVA_STRING(prefix, aName);
- if (aName != NULL) {
- retVal = H5Pset_efile_prefix((hid_t)dapl_id, aName);
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "([B[BJ)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- UNPIN_JAVA_STRING(prefix, aName);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, compare_callback, mid, value1, value2, size);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if(retVal < 0)
- h5libraryError(env);
- }
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix */
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_efile_prefix
- * Signature: (J)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
- (JNIEnv *env, jclass clss, jlong dapl_id)
-{
- size_t size = 0;
- char *pre;
- jlong prefix_size = -1;
- jstring str = NULL;
-
- prefix_size = (jlong)H5Pget_efile_prefix((hid_t)dapl_id, (char*)NULL, size);
- if(prefix_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- size = (size_t)prefix_size + 1;/* add extra space for the null terminator */
- pre = (char*)HDmalloc(sizeof(char)*size);
- if (pre == NULL) {
- h5outOfMemory(env, "H5Pget_efile_prefix: malloc failed ");
- } /* end if */
- else {
- prefix_size = (jlong)H5Pget_efile_prefix((hid_t)dapl_id, (char*)pre, size);
-
- if (prefix_size >= 0) {
- str = ENVPTR->NewStringUTF(ENVPAR pre);
- HDfree(pre);
- if (str == NULL)
- h5JNIFatalError( env, "H5Pget_efile_prefix: return string not allocated");
- } /* end if */
- else {
- HDfree(pre);
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
-
- return (jstring)str;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix */
+ return (herr_t)status;
+} /* end H5P_prp_compare_cb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_evict_on_close
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
- (JNIEnv *env, jclass clss, jlong fapl_id, jboolean evict_on_close)
+static herr_t
+H5P_prp_close_cb
+ (const char *name, size_t size, void *value)
{
- herr_t retVal = -1;
- hbool_t evict_on_close_val;
+ jmethodID mid;
+ jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ jint status = -1;
- if (evict_on_close == JNI_TRUE)
- evict_on_close_val = TRUE;
- else
- evict_on_close_val = FALSE;
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_prp_close_cb: failed to attach current thread to JVM");
+ }
- retVal = H5Pset_evict_on_close((hid_t)fapl_id, (hbool_t)evict_on_close_val);
- if (retVal < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close */
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, close_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_evict_on_close
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
- (JNIEnv *env, jclass clss, jlong fapl_id)
-{
- hbool_t evict_on_close_val = FALSE;
- jboolean bval = JNI_FALSE;
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(Ljava/lang/String;J[B)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (H5Pget_evict_on_close((hid_t)fapl_id, (hbool_t *)&evict_on_close_val) < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- if (evict_on_close_val == TRUE)
- bval = JNI_TRUE;
- } /* end else */
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- return bval;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close */
+ status = CBENVPTR->CallIntMethod(CBENVONLY, close_callback, mid, str, size, value);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk_opts
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
- (JNIEnv *env, jclass clss, jlong dcpl_id, jint opts)
-{
- herr_t retVal = -1;
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- retVal = H5Pset_chunk_opts((hid_t)dcpl_id, (unsigned)opts);
- if (retVal < 0)
- h5libraryError(env);
-} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts */
+ return (herr_t)status;
+} /* end H5P_prp_close_cb */
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk_opts
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
- (JNIEnv *env, jclass clss, jlong dcpl_id)
+static herr_t
+H5P_iterate_cb
+ (hid_t prop_id, const char *name, void *cb_data)
{
- unsigned opts = 0;
-
- if (H5Pget_chunk_opts((hid_t)dcpl_id, opts) < 0)
- h5libraryError(env);
+ cb_wrapper *wrapper = (cb_wrapper *) cb_data;
+ jmethodID mid;
+ jobject visit_callback = wrapper->visit_callback;
+ jstring str;
+ jclass cls;
+ JNIEnv *cbenv = NULL;
+ void *op_data = (void *) wrapper->op_data;
+ jint status = -1;
- return (jint)opts;
-} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts */
+ if (JVMPTR->AttachCurrentThread(JVMPAR, (void**)&cbenv, NULL) < 0) {
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_iterate_cb: failed to attach current thread to JVM");
+ }
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_dset_no_attrs_hint
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
-(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize)
-{
- herr_t retVal = -1;
- hbool_t minimize_val;
+ if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (minimize == JNI_TRUE)
- minimize_val = TRUE;
- else
- minimize_val = FALSE;
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/callbacks/H5P_iterate_t;)I")))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- retVal = H5Pset_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t)minimize_val);
- if (retVal < 0)
- h5libraryError(env);
-}
+ if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name)))
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_dset_no_attrs_hint
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
-(JNIEnv *env, jclass clss, jlong dcpl_id)
-{
- hbool_t minimize = FALSE;
- jboolean bval = JNI_FALSE;
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, prop_id, str, op_data);
+ CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (H5Pget_dset_no_attrs_hint((hid_t)dcpl_id, (hbool_t *)&minimize) < 0) {
- h5libraryError(env);
- }
- else {
- if (minimize == TRUE)
- bval = JNI_TRUE;
- } /* end else */
+done:
+ if (cbenv)
+ JVMPTR->DetachCurrentThread(JVMPAR);
- return bval;
-}
+ return status;
+} /* end H5P_iterate_cb */
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/java/src/jni/h5pImp.h b/java/src/jni/h5pImp.h
index 056c569..8318be4 100644
--- a/java/src/jni/h5pImp.h
+++ b/java/src/jni/h5pImp.h
@@ -11,12 +11,13 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5_H5P */
#ifndef _Included_hdf_hdf5lib_H5_H5P
#define _Included_hdf_hdf5lib_H5_H5P
+#include <jni.h>
+
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
@@ -32,15 +33,6 @@ Java_hdf_hdf5lib_H5__1H5Pcreate
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pclose
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5__1H5Pclose
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
* Method: H5Pget_class
* Signature: (J)J
*/
@@ -59,570 +51,74 @@ Java_hdf_hdf5lib_H5__1H5Pcopy
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_userblock
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1userblock
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_userblock
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1userblock
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sizes
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sizes
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sizes
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sizes
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sym_k
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sym_k
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_istore_k
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_istore_k
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_layout
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1layout
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_layout
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1layout
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk
- * Signature: (JI[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk
-(JNIEnv *, jclass, jlong, jint, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk
- * Signature: (JI[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk
-(JNIEnv *, jclass, jlong, jint, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_alignment
- * Signature: (JJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1alignment
-(JNIEnv *, jclass, jlong, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_alignment
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1alignment
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_external
- * Signature: (JLjava/lang/String;JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1external
-(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_external_count
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1external_1count
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_external
- * Signature: (JIJ[Ljava/lang/String;[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1external
-(JNIEnv *, jclass, jlong, jint, jlong, jobjectArray, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fill_value
- * Signature: (JJ[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
-(JNIEnv *, jclass, jlong, jlong, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fill_value
- * Signature: (JJ[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
-(JNIEnv *, jclass, jlong, jlong, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_filter
- * Signature: (JIIJ[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1filter
-(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_nfilters
+ * Method: H5Pclose
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1nfilters
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter
- * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter
-(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_driver
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1driver
+Java_hdf_hdf5lib_H5__1H5Pclose
(JNIEnv *, jclass, jlong);
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_cache
- * Signature: (JIJJD)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1cache
-(JNIEnv *, jclass, jlong, jint, jlong, jlong, jdouble);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_cache
- * Signature: (J[I[J[J[D)I
+ * TODO: H5Pencode
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1cache
-(JNIEnv *, jclass, jlong, jintArray, jlongArray, jlongArray, jdoubleArray);
/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_buffer
- * Signature: (JJ[B[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1buffer
-(JNIEnv *, jclass, jlong, jlong, jbyteArray, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_buffer
- * Signature: (J[B[B)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1buffer
-(JNIEnv *, jclass, jlong, jbyteArray, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_buffer_size
- * Signature: (JJ)V
+ * TODO: H5Pdecode
*/
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
-(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_buffer_size
- * Signature: (J)J
+ * Method: _H5Pcreate_class
+ * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_preserve
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1preserve
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_preserve
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1preserve
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_deflate
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1deflate
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_gc_references
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_gc_references
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_btree_ratios
- * Signature: (JDDD)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
-(JNIEnv *, jclass, jlong, jdouble, jdouble, jdouble);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_btree_ratios
- * Signature: (J[D[D[D)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
-(JNIEnv *, jclass, jlong, jdoubleArray, jdoubleArray, jdoubleArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_small_data_block_size
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
-(JNIEnv *, jclass, jlong, jlong);
+Java_hdf_hdf5lib_H5__1H5Pcreate_1class
+ (JNIEnv*, jclass, jlong, jstring, jobject, jobject, jobject, jobject, jobject, jobject);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_small_data_block_size
- * Signature: (J)J
+ * Method: _H5Pcreate_class_nocb
+ * Signature: (JLjava/lang/String;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_alloc_time
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_alloc_time
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fill_time
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fill_time
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pfill_value_defined
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fletcher32
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_edc_check
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_edc_check
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shuffle
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shuffle
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_szip
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1szip
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_hyper_vector_size
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_hyper_vector_size
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pall_filters_avail
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pmodify_filter
- * Signature: (JIIJ[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pmodify_1filter
-(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter_by_id
- * Signature: (JI[I[J[IJ[Ljava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
-(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fclose_degree
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fclose_degree
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_family
- * Signature: (JJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
-(JNIEnv *, jclass, jlong, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_family
- * Signature: (J[J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
-(JNIEnv *, jclass, jlong, jlongArray, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_core
- * Signature: (JJZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
-(JNIEnv *, jclass, jlong, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_core
- * Signature: (J[J[Z)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
-(JNIEnv *, jclass, jlong, jlongArray, jbooleanArray);
+Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb
+ (JNIEnv*, jclass, jlong, jstring);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_family_offset
- * Signature: (JJ)I
+ * Method: H5Pregister2
+ * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
-(JNIEnv *, jclass, jlong, jlong);
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pregister2
+ (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject, jobject);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pget_family_offset
- * Signature: (J)J
+ * Method: H5Pregister2_nocb
+ * Signature: (JLjava/lang/String;J[B)V
*/
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
-(JNIEnv *, jclass, jlong);
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pregister2_1nocb
+ (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_log
- * Signature: (JLjava/lang/String;JJ)V
+ * Method: H5Pinsert2
+ * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
*/
JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
-(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
+Java_hdf_hdf5lib_H5_H5Pinsert2
+ (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject);
/*
* Class: hdf_hdf5lib_H5
- * Method: H5Premove_filter
- * Signature: (JI)I
+ * Method: H5Pinsert2_nocb
+ * Signature: (JLjava/lang/String;J[B)V
*/
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5P1remove_1filter
-(JNIEnv *, jclass, jlong, jint);
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb
+ (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
@@ -707,6 +203,15 @@ Java_hdf_hdf5lib_H5_H5Pequal
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Piterate
+ * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Piterate
+ (JNIEnv*, jclass, jlong, jintArray, jobject, jobject);
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: H5Pcopy_prop
* Signature: (JJLjava/lang/String;)I
*/
@@ -741,889 +246,6 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Pclose_1class
(JNIEnv *, jclass, jlong);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter2
- * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter2
-(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_filter_by_id2
- * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
-(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_nlinks
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1nlinks
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_nlinks
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1nlinks
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_libver_bounds
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_libver_bounds
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_link_creation_order
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_link_creation_order
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_attr_creation_order
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_attr_creation_order
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_copy_object
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_copy_object
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_create_intermediate_group
- * Signature: (JZ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_create_intermediate_group
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_data_transform
- * Signature: (JLjava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
-(JNIEnv *, jclass, jlong, jstring);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_data_transform
- * Signature: (J[Ljava/lang/String;J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
-(JNIEnv *, jclass, jlong, jobjectArray, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_acc_flags
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_acc_flags
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_link_phase_change
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_link_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_attr_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_attr_phase_change
- * Signature: (JII)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_phase_change
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_phase_change
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_nindexes
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_nindexes
- * Signature: (JI)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_shared_mesg_index
- * Signature: (JIII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
-(JNIEnv *, jclass, jlong, jint, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_shared_mesg_index
- * Signature: (JI[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
-(JNIEnv *, jclass, jlong, jint, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_local_heap_size_hint
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_local_heap_size_hint
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_nbit
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1nbit
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_scaleoffset
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_est_link_info
- * Signature: (JII)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
-(JNIEnv *, jclass, jlong, jint, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_est_link_info
- * Signature: (J[I)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
-(JNIEnv *, jclass, jlong, jintArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_fapl
- * Signature: (JJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pget_elink_fapl
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_prefix
- * Signature: (JLjava/lang/String;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
-(JNIEnv *, jclass, jlong, jstring);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_prefix
- * Signature: (J[Ljava/lang/String;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
-(JNIEnv *, jclass, jlong, jobjectArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_direct
- * Signature: (JJJJ)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
-(JNIEnv *, jclass, jlong, jlong, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_direct
- * Signature: (J[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
-(JNIEnv *, jclass, jlong, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_sec2
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_stdio
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_windows
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_fapl_muti
- * Signature: (J[I[J[Ljava/lang/String;[J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
-(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_muti
- * Signature: (J[I[J[Ljava/lang/String;[JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
-(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_fapl_split
- * Signature: (JLjava/lang/String;JLjava/lang/String;J)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
-(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_meta_block_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_meta_block_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_sieve_buf_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_sieve_buf_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_elink_file_cache_size
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_elink_file_cache_size
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
-(JNIEnv *, jclass, jlong);
-
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_mdc_config
- * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
- */
-JNIEXPORT jobject JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_mdc_config
- * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
-(JNIEnv *, jclass, jlong, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk_cache
- * Signature: (JJJD)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
-(JNIEnv *, jclass, jlong, jlong, jlong, jdouble);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk_cache
- * Signature: (J[J[J[D)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
-(JNIEnv *, jclass, jlong, jlongArray, jlongArray, jdoubleArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_obj_track_times
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_obj_track_times
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_char_encoding
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_char_encoding
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual
- * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual
-(JNIEnv *, jclass, jlong, jlong, jstring, jstring, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_count
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_vspace
- * Signature: (JJ)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_srcspace
- * Signature: (JJ)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_filename
- * Signature: (JJ)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_dsetname
- * Signature: (JJ)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_view
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_view
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_printf_gap
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_printf_gap
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy
- * Signature: (J[Z[J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
-(JNIEnv *, jclass, jlong, jbooleanArray, jlongArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy_persist
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_strategy_threshold
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_file_space_strategy
- * Signature: (JIZJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
-(JNIEnv *, jclass, jlong, jint, jboolean, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_file_space_page_size
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_file_space_page_size
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_mdc_log_options
- * Signature: (JZLjava/lang/String;Z)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
-(JNIEnv *, jclass, jlong, jboolean, jstring, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_mdc_log_options
- * Signature: (J[Z)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
-(JNIEnv *, jclass, jlong, jbooleanArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_append_flush
- * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
- (JNIEnv*, jclass, jlong, jint, jlongArray, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pcreate_class_nocb
- * Signature: (JLjava/lang/String;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb
- (JNIEnv*, jclass, jlong, jstring);
-/*
- * Class: hdf_hdf5lib_H5
- * Method: _H5Pcreate_class
- * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Pcreate_1class
- (JNIEnv*, jclass, jlong, jstring, jobject, jobject, jobject, jobject, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pregister2_nocb
- * Signature: (JLjava/lang/String;J[B)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pregister2_1nocb
- (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pregister2
- * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pregister2
- (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pinsert2_nocb
- * Signature: (JLjava/lang/String;J[B)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb
- (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pinsert2
- * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pinsert2
- (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Piterate
- * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Piterate
- (JNIEnv*, jclass, jlong, jintArray, jobject, jobject);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_metadata_read_attempts
- * Signature: (J)J
- */
-JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_metadata_read_attempts
- * Signature: (JJ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
-(JNIEnv *, jclass, jlong, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_virtual_prefix
- * Signature: (JLjava/lang/String;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
-(JNIEnv *, jclass, jlong, jstring);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_virtual_prefix
- * Signature: (J)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_efile_prefix
- * Signature: (JLjava/lang/String;)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
-(JNIEnv *, jclass, jlong, jstring);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_efile_prefix
- * Signature: (J)Ljava/lang/String;
- */
-JNIEXPORT jstring JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_evict_on_close
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
-(JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_evict_on_close
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_chunk_opts
- * Signature: (JI)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
-(JNIEnv *, jclass, jlong, jint);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_chunk_opts
- * Signature: (J)I
- */
-JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
-(JNIEnv *, jclass, jlong);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pset_dset_no_attrs_hint
- * Signature: (JZ)V
- */
-JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
- (JNIEnv *, jclass, jlong, jboolean);
-
-/*
- * Class: hdf_hdf5lib_H5
- * Method: H5Pget_dset_no_attrs_hint
- * Signature: (J)Z
- */
-JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
- (JNIEnv *, jclass, jlong);
-
-
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
diff --git a/java/src/jni/h5pLAPLImp.c b/java/src/jni/h5pLAPLImp.c
new file mode 100644
index 0000000..c4502d5
--- /dev/null
+++ b/java/src/jni/h5pLAPLImp.c
@@ -0,0 +1,237 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pLAPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_nlinks
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1nlinks
+ (JNIEnv *env, jclass clss, jlong lapl_id, jlong nlinks)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (nlinks <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_nlinks: nlinks <= 0");
+
+ if ((retVal = H5Pset_nlinks((hid_t)lapl_id, (size_t)nlinks)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1nlinks */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_nlinks
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1nlinks
+ (JNIEnv *env, jclass clss, jlong lapl_id)
+{
+ size_t nlinks = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_nlinks((hid_t)lapl_id, &nlinks) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong) nlinks;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1nlinks */
+
+/*
+ * TODO: H5Pset_elink_cb
+ */
+
+/*
+ * TODO: H5Pget_elink_cb
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_prefix
+ * Signature: (JLjava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
+ (JNIEnv *env, jclass clss, jlong lapl_id, jstring prefix)
+{
+ const char *linkPrefix = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ PIN_JAVA_STRING(ENVONLY, prefix, linkPrefix, NULL, "H5Pset_elink_prefix: link prefix not pinned");
+
+ if ((retVal = H5Pset_elink_prefix((hid_t)lapl_id, linkPrefix)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (linkPrefix)
+ UNPIN_JAVA_STRING(ENVONLY, prefix, linkPrefix);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_prefix
+ * Signature: (J[Ljava/lang/String;)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
+ (JNIEnv *env, jclass clss, jlong lapl_id, jobjectArray prefix)
+{
+ ssize_t prefix_size = -1;
+ size_t size = 0;
+ char *pre = NULL;
+ jstring str = NULL;
+
+ UNUSED(clss);
+
+ if (NULL == prefix)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_elink_prefix: prefix is NULL");
+
+ if ((prefix_size = H5Pget_elink_prefix((hid_t)lapl_id, (char *)NULL, size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: memory allocation failed");
+
+ if (H5Pget_elink_prefix((hid_t)lapl_id, (char *)pre, (size_t) prefix_size + 1) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ pre[prefix_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: out of memory - unable to construct string from UTF characters");
+ }
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, prefix, 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (pre)
+ HDfree(pre);
+
+ return (jlong)prefix_size;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_fapl
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
+ (JNIEnv *env, jclass clss, jlong lapl_id, jlong fapl_id)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_elink_fapl((hid_t)lapl_id, (hid_t)fapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: _H5Pget_elink_fapl
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
+ (JNIEnv *env, jclass clss, jlong lapl_id)
+{
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pget_elink_fapl((hid_t)lapl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jlong)retVal;
+} /* end Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_acc_flags
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
+ (JNIEnv *env, jclass clss, jlong lapl_id, jint flags)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_elink_acc_flags((hid_t)lapl_id, (unsigned)flags)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint) retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_acc_flags
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
+ (JNIEnv *env, jclass clss, jlong lapl_id)
+{
+ unsigned flags;
+
+ UNUSED(clss);
+
+ if (H5Pget_elink_acc_flags((hid_t)lapl_id, &flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)flags;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pLAPLImp.h b/java/src/jni/h5pLAPLImp.h
new file mode 100644
index 0000000..8efcfb5
--- /dev/null
+++ b/java/src/jni/h5pLAPLImp.h
@@ -0,0 +1,107 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PLAPL
+#define _Included_hdf_hdf5lib_H5_H5PLAPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_nlinks
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1nlinks
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_nlinks
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1nlinks
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Pset_elink_cb
+ */
+
+/*
+ * TODO: H5Pget_elink_cb
+ */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_prefix
+ * Signature: (JLjava/lang/String;)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
+(JNIEnv *, jclass, jlong, jstring);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_prefix
+ * Signature: (J[Ljava/lang/String;)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
+(JNIEnv *, jclass, jlong, jobjectArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_fapl
+ * Signature: (JJ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
+(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: _H5Pget_elink_fapl
+ * Signature: (J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_elink_acc_flags
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_elink_acc_flags
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PLAPL */
diff --git a/java/src/jni/h5pLCPLImp.c b/java/src/jni/h5pLCPLImp.c
new file mode 100644
index 0000000..7c79796
--- /dev/null
+++ b/java/src/jni/h5pLCPLImp.c
@@ -0,0 +1,36 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pLCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pLCPLImp.h b/java/src/jni/h5pLCPLImp.h
new file mode 100644
index 0000000..009d1b4
--- /dev/null
+++ b/java/src/jni/h5pLCPLImp.h
@@ -0,0 +1,27 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PLCPL
+#define _Included_hdf_hdf5lib_H5_H5PLCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PLCPL */
diff --git a/java/src/jni/h5pOCPLImp.c b/java/src/jni/h5pOCPLImp.c
new file mode 100644
index 0000000..241842e
--- /dev/null
+++ b/java/src/jni/h5pOCPLImp.c
@@ -0,0 +1,211 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pOCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_create_intermediate_group
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
+ (JNIEnv *env, jclass clss, jlong lcpl_id, jboolean crt_intermed_group)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_create_intermediate_group((hid_t)lcpl_id, (unsigned)crt_intermed_group)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_create_intermediate_group
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
+ (JNIEnv *env, jclass clss, jlong lcpl_id)
+{
+ unsigned crt_intermed_group = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_create_intermediate_group((hid_t)lcpl_id, &crt_intermed_group) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jboolean)crt_intermed_group;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_obj_track_times
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
+ (JNIEnv *env, jclass clss, jlong objplid, jboolean track_times)
+{
+ hbool_t track = FALSE;
+
+ UNUSED(clss);
+
+ track = (JNI_TRUE == track_times) ? 1 : 0;
+
+ if (H5Pset_obj_track_times((hid_t)objplid, track) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_obj_track_times
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
+ (JNIEnv *env, jclass clss, jlong objplid)
+{
+ hbool_t track_times = FALSE;
+ jboolean retVal = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if (H5Pget_obj_track_times((hid_t)objplid, &track_times) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ retVal = (track_times == TRUE) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_attr_phase_change
+ * Signature: (JII)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
+ (JNIEnv *env, jclass clss, jlong ocpl_id, jint max_compact, jint min_dense)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_attr_phase_change((hid_t)ocpl_id, (unsigned)max_compact, (unsigned)min_dense)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_attr_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
+ (JNIEnv *env, jclass clss, jlong ocpl_id, jintArray attributes)
+{
+ jboolean isCopy;
+ jint *theArray = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == attributes)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_attr_phase_change: attributes is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, attributes, theArray, &isCopy, "H5Pget_attr_phase_change: input not pinned");
+
+ if ((retVal = H5Pget_attr_phase_change((hid_t)ocpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (theArray)
+ UNPIN_INT_ARRAY(ENVONLY, attributes, theArray, (retVal < 0) ? JNI_ABORT : 0);
+
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_attr_creation_order
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
+ (JNIEnv *env, jclass clss, jlong ocpl_id, jint crt_order_flags)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_attr_creation_order((hid_t)ocpl_id, (unsigned)crt_order_flags)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_attr_creation_order
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
+ (JNIEnv *env, jclass clss, jlong ocpl_id)
+{
+ unsigned crt_order_flags = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_attr_creation_order((hid_t)ocpl_id, &crt_order_flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)crt_order_flags;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pOCPLImp.h b/java/src/jni/h5pOCPLImp.h
new file mode 100644
index 0000000..fe01f06
--- /dev/null
+++ b/java/src/jni/h5pOCPLImp.h
@@ -0,0 +1,99 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5POCPL
+#define _Included_hdf_hdf5lib_H5_H5POCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_create_intermediate_group
+ * Signature: (JZ)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_create_intermediate_group
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_obj_track_times
+ * Signature: (JZ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
+(JNIEnv *, jclass, jlong, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_obj_track_times
+ * Signature: (J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
+(JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_attr_phase_change
+ * Signature: (JII)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
+(JNIEnv *, jclass, jlong, jint, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_attr_phase_change
+ * Signature: (J[I)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
+(JNIEnv *, jclass, jlong, jintArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_attr_creation_order
+ * Signature: (JI)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_attr_creation_order
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5POCPL */
diff --git a/java/src/jni/h5pOCpyPLImp.c b/java/src/jni/h5pOCpyPLImp.c
new file mode 100644
index 0000000..9481f91
--- /dev/null
+++ b/java/src/jni/h5pOCpyPLImp.c
@@ -0,0 +1,92 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pOCpyPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_copy_object
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
+ (JNIEnv *env, jclass clss, jlong ocp_plist_id, jint copy_options)
+{
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if ((retVal = H5Pset_copy_object((hid_t)ocp_plist_id, (unsigned)copy_options)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1copy_1object */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_copy_object
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
+ (JNIEnv *env, jclass clss, jlong ocp_plist_id)
+{
+ unsigned copy_options = 0;
+
+ UNUSED(clss);
+
+ if (H5Pget_copy_object((hid_t)ocp_plist_id, &copy_options) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)copy_options;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1copy_1object */
+
+/*
+ * TODO: H5Padd_merge_committed_dtype_path
+ */
+
+/*
+ * TODO: H5Pfree_merge_committed_dtype_paths
+ */
+
+/*
+ * TODO: H5Pset_mcdt_search_cb
+ */
+
+/*
+ * TODO: H5Pget_mcdt_search_cb
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pOCpyPLImp.h b/java/src/jni/h5pOCpyPLImp.h
new file mode 100644
index 0000000..f1dca58
--- /dev/null
+++ b/java/src/jni/h5pOCpyPLImp.h
@@ -0,0 +1,61 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5POCpyPL
+#define _Included_hdf_hdf5lib_H5_H5POCpyPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_copy_object
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_copy_object
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
+(JNIEnv *, jclass, jlong);
+
+/*
+ * TODO: H5Padd_merge_committed_dtype_path
+ */
+
+/*
+ * TODO: H5Pfree_merge_committed_dtype_paths
+ */
+
+/*
+ * TODO: H5Pset_mcdt_search_cb
+ */
+
+/*
+ * TODO: H5Pget_mcdt_search_cb
+ */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5POCpyPL */
diff --git a/java/src/jni/h5pStrCPLImp.c b/java/src/jni/h5pStrCPLImp.c
new file mode 100644
index 0000000..e69847d
--- /dev/null
+++ b/java/src/jni/h5pStrCPLImp.c
@@ -0,0 +1,74 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * For details of the HDF libraries, see the HDF Documentation at:
+ * http://hdfgroup.org/HDF5/doc/
+ *
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+#include <stdlib.h>
+#include "hdf5.h"
+#include "h5jni.h"
+#include "h5pStrCPLImp.h"
+
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_char_encoding
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
+ (JNIEnv *env, jclass clss, jlong acpl, jint encoding)
+{
+ UNUSED(clss);
+
+ if (H5Pset_char_encoding((hid_t)acpl, (H5T_cset_t)encoding) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_char_encoding
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
+ (JNIEnv *env, jclass clss, jlong acpl)
+{
+ H5T_cset_t encoding = H5T_CSET_ERROR;
+
+ UNUSED(clss);
+
+ if (H5Pget_char_encoding((hid_t)acpl, &encoding) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return encoding;
+} /* end Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
diff --git a/java/src/jni/h5pStrCPLImp.h b/java/src/jni/h5pStrCPLImp.h
new file mode 100644
index 0000000..6e140d3
--- /dev/null
+++ b/java/src/jni/h5pStrCPLImp.h
@@ -0,0 +1,45 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _Included_hdf_hdf5lib_H5_H5PStrCPL
+#define _Included_hdf_hdf5lib_H5_H5PStrCPL
+
+#include <jni.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_char_encoding
+ * Signature: (JI)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
+(JNIEnv *, jclass, jlong, jint);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_char_encoding
+ * Signature: (J)I
+ */
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
+(JNIEnv *, jclass, jlong);
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* _Included_hdf_hdf5lib_H5_H5PStrCPL */
diff --git a/java/src/jni/h5plImp.c b/java/src/jni/h5plImp.c
index d551120..4e096f1 100644
--- a/java/src/jni/h5plImp.c
+++ b/java/src/jni/h5plImp.c
@@ -26,7 +26,10 @@ extern "C" {
#include "h5jni.h"
#include "h5plImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -37,9 +40,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLset_1loading_1state
(JNIEnv *env, jclass clss, jint plugin_flags)
{
- if (H5PLset_loading_state((unsigned int)plugin_flags) < 0) {
- h5libraryError(env);
- }
+ UNUSED(clss);
+
+ if (H5PLset_loading_state((unsigned int)plugin_flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5PLset_1loading_1state */
/*
@@ -52,9 +59,13 @@ Java_hdf_hdf5lib_H5_H5PLget_1loading_1state
(JNIEnv *env, jclass clss)
{
unsigned int plugin_type = 0;
- if (H5PLget_loading_state(&plugin_type) < 0) {
- h5libraryError(env);
- }
+
+ UNUSED(clss);
+
+ if (H5PLget_loading_state(&plugin_type) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)plugin_type;
} /* end Java_hdf_hdf5lib_H5_H5PLget_1loading_1state */
@@ -67,18 +78,19 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLappend
(JNIEnv *env, jclass clss, jobjectArray plugin_path)
{
- const char *aName;
- herr_t retVal = -1;
+ const char *newPath = NULL;
+ herr_t retVal = FAIL;
- PIN_JAVA_STRING(plugin_path, aName);
- if (aName != NULL) {
- retVal = H5PLappend(aName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(plugin_path, aName);
+ PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLappend: new path not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5PLappend(newPath)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newPath)
+ UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLappend */
/*
* Class: hdf_hdf5lib_H5
@@ -89,18 +101,19 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLprepend
(JNIEnv *env, jclass clss, jobjectArray plugin_path)
{
- const char *aName;
- herr_t retVal = -1;
+ const char *newPath = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- PIN_JAVA_STRING(plugin_path, aName);
- if (aName != NULL) {
- retVal = H5PLprepend(aName);
+ PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLprepend: new path not pinned");
- UNPIN_JAVA_STRING(plugin_path, aName);
+ if ((retVal = H5PLprepend(newPath)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retVal < 0)
- h5libraryError(env);
- }
+done:
+ if (newPath)
+ UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLprepend */
/*
@@ -112,18 +125,22 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLreplace
(JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index)
{
- const char *aName;
- herr_t retVal = -1;
+ const char *newPath = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- PIN_JAVA_STRING(plugin_path, aName);
- if (aName != NULL) {
- retVal = H5PLreplace(aName, index);
+ if (index < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLreplace: index < 0");
- UNPIN_JAVA_STRING(plugin_path, aName);
+ PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLreplace: new path not pinned");
- if (retVal < 0)
- h5libraryError(env);
- }
+ if ((retVal = H5PLreplace(newPath, (unsigned) index)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (newPath)
+ UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLreplace */
/*
@@ -135,18 +152,22 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLinsert
(JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index)
{
- const char *aName;
- herr_t retVal = -1;
+ const char *newPath = NULL;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
+
+ if (index < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLinsert: index < 0");
- PIN_JAVA_STRING(plugin_path, aName);
- if (aName != NULL) {
- retVal = H5PLinsert(aName, index);
+ PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLinsert: new path not pinned");
- UNPIN_JAVA_STRING(plugin_path, aName);
+ if ((retVal = H5PLinsert(newPath, (unsigned) index)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retVal < 0)
- h5libraryError(env);
- }
+done:
+ if (newPath)
+ UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLinsert */
/*
@@ -158,8 +179,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLremove
(JNIEnv *env, jclass clss, jint index)
{
- if (H5PLremove(index) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (index < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLremove: index < 0");
+
+ if (H5PLremove((unsigned) index) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5PLremove */
/*
@@ -171,33 +200,33 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5PLget
(JNIEnv *env, jclass clss, jint index)
{
- char *aName;
jstring str = NULL;
ssize_t buf_size;
+ char *aName = NULL;
+
+ UNUSED(clss);
+
+ if (index < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLget: index < 0");
+
+ /* Get the length of the name */
+ if ((buf_size = H5PLget((unsigned) index, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5PLget: failed to allocate plugin name buffer");
+
+ if ((H5PLget((unsigned) index, aName, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ aName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (aName)
+ HDfree(aName);
- /* get the length of the name */
- buf_size = H5PLget(index, NULL, 0);
-
- if (buf_size <= 0) {
- h5badArgument(env, "H5PLget: buf_size <= 0");
- } /* end if */
- else {
- buf_size++; /* add extra space for the null terminator */
- aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (aName == NULL) {
- h5outOfMemory(env, "H5PLget: malloc failed");
- } /* end if */
- else {
- buf_size = H5PLget(index, aName, (size_t)buf_size);
- if (buf_size < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- }
- HDfree(aName);
- }
- }
return str;
} /* end Java_hdf_hdf5lib_H5_H5PLget */
@@ -211,9 +240,13 @@ Java_hdf_hdf5lib_H5_H5PLsize
(JNIEnv *env, jclass clss)
{
unsigned int listsize = 0;
- if (H5PLsize(&listsize) < 0) {
- h5libraryError(env);
- }
+
+ UNUSED(clss);
+
+ if (H5PLsize(&listsize) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)listsize;
} /* end Java_hdf_hdf5lib_H5_H5PLsize */
diff --git a/java/src/jni/h5rImp.c b/java/src/jni/h5rImp.c
index 5f2b86d..9278113 100644
--- a/java/src/jni/h5rImp.c
+++ b/java/src/jni/h5rImp.c
@@ -26,8 +26,10 @@ extern "C" {
#include "h5jni.h"
#include "h5rImp.h"
-extern JavaVM *jvm;
-
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -38,47 +40,42 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rcreate
(JNIEnv *env, jclass clss, jbyteArray ref, jlong loc_id, jstring name, jint ref_type, jlong space_id)
{
- const char *rName;
- herr_t status = -1;
- jbyte *refP;
- jboolean isCopy2;
-
- PIN_JAVA_STRING(name, rName);
- if (rName != NULL) {
- if (ref == NULL) {
- h5nullArgument( env, "H5Rcreate: ref is NULL");
- } /* end if */
- else {
- if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rcreate: ref input array != H5R_OBJ_REF_BUF_SIZE");
- } /* end if */
- else if ((ref_type == H5R_DATASET_REGION) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rcreate: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
- } /* end else if */
- else if ((ref_type != H5R_OBJECT) && (ref_type != H5R_DATASET_REGION)) {
- h5badArgument( env, "H5Rcreate: ref_type unknown type ");
- } /* end else if */
- else {
- refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy2);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rcreate: ref not pinned");
- } /* end if */
- else {
- status = H5Rcreate(refP, (hid_t)loc_id, rName, (H5R_type_t)ref_type, (hid_t)space_id);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- UNPIN_JAVA_STRING(name, rName);
+ const char *refName = NULL;
+ jboolean isCopy;
+ jbyte *refBuf = NULL;
+ jsize refBufLen;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference is NULL");
+
+ if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: ref array length < 0");
}
+ if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference input array length != H5R_OBJ_REF_BUF_SIZE")
+ else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
+ else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: unknown reference type");
+
+ PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate: reference name not pinned");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rcreate: reference buffer not pinned");
+
+ if ((status = H5Rcreate(refBuf, (hid_t)loc_id, refName, (H5R_type_t)ref_type, (hid_t)space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (status < 0) ? JNI_ABORT : 0);
+ if (refName)
+ UNPIN_JAVA_STRING(ENVONLY, name, refName);
+
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate */
@@ -91,33 +88,36 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rdereference
(JNIEnv *env, jclass clss, jlong dataset, jlong access_list, jint ref_type, jbyteArray ref)
{
- jboolean isCopy;
- jbyte *refP;
- hid_t retVal = -1;
-
- if (ref == NULL) {
- h5nullArgument( env, "H5Rdereference: ref is NULL");
- } /* end if */
- else if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rdereference: obj ref input array != H5R_OBJ_REF_BUF_SIZE");
- } /* end else if */
- else if ((ref_type == H5R_DATASET_REGION) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rdereference: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
- } /* end else if */
- else {
- refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rderefernce: ref not pinned");
- } /* end if */
- else {
- retVal = H5Rdereference2((hid_t)dataset, (hid_t)access_list, (H5R_type_t)ref_type, refP);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
-
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jbyte *refBuf = NULL;
+ jsize refBufLen;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference buffer is NULL");
+
+ if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: ref array length < 0");
+ }
+
+ if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference input array length != H5R_OBJ_REF_BUF_SIZE")
+ else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
+ else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: unknown reference type");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rderefernce: reference buffer not pinned");
+
+ if ((retVal = H5Rdereference2((hid_t)dataset, (hid_t)access_list, (H5R_type_t)ref_type, refBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rdereference */
@@ -131,33 +131,34 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rget_1region
(JNIEnv *env, jclass clss, jlong dataset, jint ref_type, jbyteArray ref)
{
- hid_t retVal = -1;
- jboolean isCopy;
- jbyte *refP;
-
- if (ref_type != H5R_DATASET_REGION) {
- h5badArgument( env, "H5Rget_region: bad ref_type ");
- } /* end if */
- else if (ref == NULL) {
- h5nullArgument( env, "H5Rget_region: ref is NULL");
- } /* end if */
- else if ( ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
- h5badArgument( env, "H5Rget_region: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
- } /* end if */
- else {
- refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rget_region: ref not pinned");
- } /* end if */
- else {
- retVal = H5Rget_region((hid_t)dataset, (H5R_type_t)ref_type, refP);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
-
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jbyte *refBuf = NULL;
+ jsize refBufLen;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (H5R_DATASET_REGION != ref_type)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: bad reference type");
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: reference buffer is NULL");
+
+ if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: ref array length < 0");
+ }
+
+ if (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_region: reference buffer not pinned");
+
+ if ((retVal = H5Rget_region((hid_t)dataset, (H5R_type_t)ref_type, refBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rget_1region */
@@ -171,31 +172,27 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref)
{
- int retVal =-1;
- jboolean isCopy;
- jbyte *refP;
- H5O_type_t object_info;
-
-
- if (ref == NULL) {
- h5nullArgument( env, "H5Rget_object_type: ref is NULL");
- } /* end if */
- else {
- refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rget_object_type: ref not pinned");
- } /* end if */
- else {
- retVal = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refP, &object_info);
- if(retVal >= 0)
- retVal = object_info;
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
-
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ H5O_type_t object_info;
+ jboolean isCopy;
+ jbyte *refBuf = NULL;
+ int retVal = -1;
+
+ UNUSED(clss);
+
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type: reference buffer not pinned");
+
+ if ((retVal = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, &object_info)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (retVal >= 0)
+ retVal = object_info;
+
+done:
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type */
@@ -209,46 +206,33 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jintArray ref_obj)
{
+ jboolean isCopy, isCopy2;
+ jbyte *refBuf = NULL;
+ jint *ref_objP = NULL;
+ jint status;
+ int retVal = -1;
+
+ UNUSED(clss);
+
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference buffer is NULL");
+ if (NULL == ref_obj)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference object is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type: reference buffer not pinned");
- jint status;
- jboolean isCopy;
- jbyte *refP;
- jint *ref_objP;
- int retVal = -1;
-
-
- if (ref == NULL) {
- h5nullArgument( env, "H5Rget_object_type: ref is NULL");
- } /* end if */
- else if (ref_obj == NULL) {
- h5nullArgument( env, "H5Rget_object_type: ref_obj is NULL");
- } /* end else if */
- else {
- refP = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rget_object_type: ref not pinned");
- } /* end if */
- else {
- ref_objP = (jint *)ENVPTR->GetIntArrayElements(ENVPAR ref_obj, &isCopy);
- if (ref_objP == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref,refP,0);
- h5JNIFatalError(env, "H5Rget_object_type: ref_obj not pinned");
- } /* end if */
- else {
- status = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refP, (H5O_type_t*)ref_objP);
- retVal = ref_objP[0];
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR ref_obj,ref_objP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- ENVPTR->ReleaseIntArrayElements(ENVPAR ref_obj, ref_objP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ PIN_INT_ARRAY(ENVONLY, ref_obj, ref_objP, &isCopy2, "H5Rget_obj_type: reference object array not pinned");
+
+ if ((status = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, (H5O_type_t *)ref_objP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ retVal = ref_objP[0];
+
+done:
+ if (ref_objP)
+ UNPIN_INT_ARRAY(ENVONLY, ref_obj, ref_objP, (status < 0) ? JNI_ABORT : 0);
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2 */
@@ -262,57 +246,52 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1name
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jobjectArray name, jlong size)
{
- jlong ret_val = -1;
- jbyte *refP;
- jboolean isCopy;
- char *aName = NULL;
- jstring str;
- size_t bs;
-
- bs = (size_t)size;
- if (bs <= 0) {
- h5badArgument(env, "H5Rget_name: size <= 0");
- } /* end if */
- else if (ref == NULL) {
- h5nullArgument(env, "H5Rget_name: ref is NULL");
- } /* end else if */
- else {
- if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
- h5badArgument(env, "H5Rget_name: obj ref input array != H5R_OBJ_REF_BUF_SIZE");
- } /* end if */
- else if ((ref_type == H5R_DATASET_REGION)
- && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
- h5badArgument(env, "H5Rget_name: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
- } /* end else if */
- else {
- refP = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
- if (refP == NULL) {
- h5JNIFatalError(env, "H5Rget_name: ref not pinned");
- } /* end if */
- else {
- aName = (char*)HDmalloc(sizeof(char)*bs);
- if (aName == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
- h5outOfMemory(env, "H5Rget_name: malloc failed");
- } /* end if */
- else {
- ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refP, aName, bs) ;
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
- if (ret_val < 0) {
- HDfree(aName);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR aName);
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, str);
-
- HDfree(aName);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jstring str;
+ jsize refBufLen;
+ jbyte *refBuf = NULL;
+ char *aName = NULL;
+ jlong ret_val = -1;
+
+ UNUSED(clss);
+
+ if (size <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: size <= 0");
+ if (NULL == ref)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference buffer is NULL");
+
+ if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: ref array length < 0");
+ }
+
+ if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE")
+ else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
+ else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: unknown reference type");
+
+ PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_name: reference buffer not pinned");
+
+ if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer");
+
+ if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName, (size_t)size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ aName[(size_t)size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, (jsize) 0, str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (aName)
+ HDfree(aName);
+ if (refBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);
return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1name */
diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c
index 65cdd7b..67ea59d 100644
--- a/java/src/jni/h5sImp.c
+++ b/java/src/jni/h5sImp.c
@@ -26,7 +26,10 @@ extern "C" {
#include "h5jni.h"
#include "h5sImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -37,12 +40,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Screate
(JNIEnv *env, jclass clss, jint type)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Screate((H5S_class_t) type);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Screate((H5S_class_t) type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Screate */
@@ -55,98 +60,83 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Screate_1simple
(JNIEnv *env, jclass clss, jint rank, jlongArray dims, jlongArray maxdims)
{
- hid_t retVal = -1;
- jlong *dimsP, *maxdimsP;
- jboolean isCopy;
- hsize_t *sa = NULL;
- hsize_t *msa = NULL;
- int i;
- int drank, mrank;
- hsize_t *lp;
- jlong *jlp;
-
- if (rank < 0) {
- h5badArgument(env, "H5Screate_simple: rank is invalid");
- } /* end if */
- else if (dims == NULL) {
- h5nullArgument(env, "H5Screate_simple: dims is NULL");
- } /* end else if */
+ jboolean isCopy;
+ hsize_t *sa = NULL;
+ hsize_t *msa = NULL;
+ hsize_t *lp = NULL;
+ jlong *dimsP = NULL, *maxdimsP = NULL;
+ jlong *jlp = NULL;
+ jsize drank, mrank;
+ int i;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (rank < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: rank is invalid");
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims is NULL");
+
+ if ((drank = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims array length < 0");
+ }
+
+ if (drank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: dims rank is invalid");
+
+ if (NULL != maxdims) {
+ if ((mrank = ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: maxdims array length < 0");
+ }
+
+ if (mrank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Screate_simple: maxdims rank is invalid");
+ }
+
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Screate_simple: dims not pinned");
+
+ if (NULL == (sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Screate_simple: failed to allocate dims buffer")
+
+ jlp = (jlong *) dimsP;
+ for (i = 0; i < rank; i++) {
+ *lp = (hsize_t) *jlp;
+ lp++;
+ jlp++;
+ } /* end for */
+
+ if (NULL == maxdims) {
+ maxdimsP = NULL;
+ msa = (hsize_t *)maxdimsP;
+ }
else {
- drank = (int)ENVPTR->GetArrayLength(ENVPAR dims);
- if (drank != rank) {
- h5badArgument(env, "H5Screate_simple: dims rank is invalid");
- return -1;
- } /* end if */
- if (maxdims != NULL) {
- mrank = (int)ENVPTR->GetArrayLength(ENVPAR maxdims);
- if (mrank != rank) {
- h5badArgument(env, "H5Screate_simple: maxdims rank is invalid");
- return -1;
- } /* end if */
- } /* end if */
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Screate_simple: dims not pinned");
- return -1;
- } /* end if */
+ PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Screate_simple: maxdims not pinned");
- sa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Screate_simple: dims not converted to hsize_t");
- return -1;
- } /* end if */
+ if (NULL == (msa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Screate_simple: failed to allocate maxdims buffer")
- jlp = (jlong *) dimsP;
- for (i = 0; i < rank; i++) {
+ jlp = (jlong *) maxdimsP;
+ for (i = 0; i < mrank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
} /* end for */
+ }
- if (maxdims == NULL) {
- maxdimsP = NULL;
- msa = (hsize_t *)maxdimsP;
- } /* end if */
- else {
- maxdimsP = ENVPTR->GetLongArrayElements(ENVPAR maxdims, &isCopy);
- if (maxdimsP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- h5JNIFatalError(env, "H5Screate_simple: maxdims not pinned");
- return -1;
- } /* end if */
- msa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (msa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- HDfree(sa);
- h5JNIFatalError(env, "H5Screate_simple: dims not converted to hsize_t");
- return -1;
- } /* end if */
- jlp = (jlong *)maxdimsP;
- for (i = 0; i < mrank; i++) {
- *lp = (hsize_t)*jlp;
- lp++;
- jlp++;
- } /* end for */
- } /* end else */
-
- retVal = H5Screate_simple(rank, (const hsize_t *)sa, (const hsize_t *)msa);
-
- if (maxdimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- if (msa)
- HDfree(msa);
- } /* end if */
+ if ((retVal = H5Screate_simple(rank, (const hsize_t *)sa, (const hsize_t *)msa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- if (sa)
- HDfree(sa);
-
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
+done:
+ if (msa)
+ HDfree(msa);
+ if (maxdimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, JNI_ABORT);
+ if (sa)
+ HDfree(sa);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, JNI_ABORT);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Screate_1simple */
@@ -160,12 +150,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Scopy
(JNIEnv *env, jclass clss, jlong space_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Scopy(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Scopy(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Scopy */
@@ -185,41 +177,37 @@ Java_hdf_hdf5lib_H5__1H5Scopy
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1elements
- (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jlongArray coord)
+ (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jlongArray coords)
{
- herr_t status = -1;
- jint i;
- jlong *P;
- jboolean isCopy;
- hssize_t *sa;
- int rank;
-
- if (coord == NULL) {
- h5nullArgument( env, "H5Sselect_elements: coord is NULL");
- return -1;
- } /* end if */
+ jboolean isCopy;
+ hssize_t *sa = NULL;
+ jlong *P = NULL;
+ jint i;
+ int rank;
+ herr_t status = FAIL;
- P = ENVPTR->GetLongArrayElements(ENVPAR env,coord,&isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Sselect_elements: coord not pinned");
- return -1;
- } /* end if */
- sa = (hssize_t *)HDmalloc( (size_t)num_elems * 2 * sizeof(hssize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR env,coord,P,JNI_ABORT);
- h5JNIFatalError(env, "H5Sselect_elements: coord array not converted to hssize_t");
- return -1;
- } /* end if */
- for (i= 0; i < (num_elsms * 2); i++) {
+ UNUSED(clss);
+
+ if (NULL == coords)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned");
+
+ if (NULL == (sa = (hssize_t *) HDmalloc( (size_t)num_elemn * 2 * sizeof(hssize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer");
+
+ for (i = 0; i < (num_elemn * 2); i++) {
sa[i] = P[i];
} /* end for */
- status = H5Sselect_elements (space_id, (H5S_seloper_t)op, num_elemn, (const hssize_t **)&sa);
- ENVPTR->ReleaseLongArrayElements(ENVPAR env, coord, P, JNI_ABORT);
- HDfree(sa);
+ if ((status = H5Sselect_elements(space_id, (H5S_seloper_t)op, num_elemn, (const hssize_t **)&sa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
+done:
+ if (sa)
+ HDfree(sa);
+ if (P)
+ UNPIN_LONG_ARRAY(ENVONLY, coords, P, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1elements */
@@ -232,49 +220,51 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1elements
- (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jbyteArray coord)
+ (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jbyteArray coords)
{
- int ii;
- hsize_t *lp = NULL;
- hsize_t *llp;
- jlong *jlp;
- herr_t status = -1;
- jbyte *P;
- jboolean isCopy;
- jsize size;
- int nlongs;
-
- if (coord == NULL) {
- h5nullArgument(env, "H5Sselect_elements: coord is NULL");
- } /* end if */
- else {
- P = ENVPTR->GetByteArrayElements(ENVPAR coord, &isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Sselect_elements: coord not pinned");
- } /* end if */
- else {
- size = (int)ENVPTR->GetArrayLength(ENVPAR coord);
- nlongs = (int)((size_t)size / sizeof(jlong));
- lp = (hsize_t *)HDmalloc((size_t)nlongs * sizeof(hsize_t));
- jlp = (jlong *) P;
- llp = lp;
- for (ii = 0; ii < nlongs; ii++) {
- *lp = (hsize_t) *jlp;
- lp++;
- jlp++;
- } /* end for */
-
- status = H5Sselect_elements(space_id, (H5S_seloper_t)op, (size_t)num_elemn, (const hsize_t *)llp);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR coord, P, JNI_ABORT);
-
- if (llp)
- HDfree(llp);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *lp = NULL;
+ hsize_t *llp = NULL;
+ jlong *jlp = NULL;
+ jbyte *P = NULL;
+ jsize size;
+ int ii;
+ int nlongs;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == coords)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned");
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, coords)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_elements: coords array length < 0");
+ }
+
+ nlongs = (int)((size_t)size / sizeof(jlong));
+
+ if (NULL == (lp = (hsize_t *) HDmalloc((size_t)nlongs * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer");
+
+ jlp = (jlong *) P;
+ llp = lp;
+ for (ii = 0; ii < nlongs; ii++) {
+ *lp = (hsize_t) *jlp;
+ lp++;
+ jlp++;
+ } /* end for */
+
+ if ((status = H5Sselect_elements(space_id, (H5S_seloper_t)op, (size_t)num_elemn, (const hsize_t *)llp)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (llp)
+ HDfree(llp);
+ if (P)
+ UNPIN_BYTE_ARRAY(ENVONLY, coords, P, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1elements */
@@ -288,12 +278,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1all
(JNIEnv *env, jclass clss, jlong space_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Sselect_all(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Sselect_all(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1all */
@@ -306,12 +298,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1none
(JNIEnv *env, jclass clss, jlong space_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Sselect_none(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Sselect_none(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1none */
@@ -326,12 +320,14 @@ Java_hdf_hdf5lib_H5_H5Sselect_1valid
{
htri_t bval = JNI_FALSE;
- bval = H5Sselect_valid(space_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((bval = H5Sselect_valid(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1valid */
@@ -344,11 +340,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints
(JNIEnv *env, jclass clss, jlong space_id)
{
- hssize_t retVal = H5Sget_simple_extent_npoints(space_id);
+ hssize_t retVal = -1;
+
+ UNUSED(clss);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Sget_simple_extent_npoints(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints */
@@ -361,11 +360,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints
(JNIEnv *env, jclass clss, jlong space_id)
{
- hssize_t retVal = H5Sget_select_npoints(space_id);
+ hssize_t retVal = -1;
+
+ UNUSED(clss);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Sget_select_npoints(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints */
@@ -380,10 +382,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1type
{
int retVal = -1;
- retVal = H5Sget_select_type(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5S_SEL_ERROR == (retVal = H5Sget_select_type(space_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1type */
@@ -398,10 +402,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims
{
int retVal = -1;
- retVal = H5Sget_simple_extent_ndims(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((retVal = H5Sget_simple_extent_ndims(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims */
@@ -414,100 +420,78 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims
(JNIEnv *env, jclass clss, jlong space_id, jlongArray dims, jlongArray maxdims)
{
- int status = -1;
- jlong *dimsP, *maxdimsP;
- jboolean isCopy;
- hsize_t *sa;
- hsize_t *msa;
- int i;
- int rank = -1;
- int mrank;
-
- if (dims == NULL) {
+ jboolean isCopy;
+ hsize_t *sa = NULL;
+ hsize_t *msa = NULL;
+ jlong *dimsP = NULL, *maxdimsP = NULL;
+ int i;
+ int rank = -1;
+ int mrank;
+ int status = -1;
+
+ UNUSED(clss);
+
+ if (NULL == dims) {
dimsP = NULL;
sa = (hsize_t *) dimsP;
- } /* end if */
+ }
else {
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Pget_simple_extent_dims: dims not pinned");
- return -1;
- } /* end if */
- rank = (int)ENVPTR->GetArrayLength(ENVPAR dims);
- sa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_simple_extent_dims: dims not converted to hsize_t");
- return -1;
- } /* end if */
- } /* end else */
- if (maxdims == NULL) {
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sget_simple_extent_dims: dims not pinned");
+
+ if ((rank = (int)ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: dims array length < 0");
+ }
+
+ if (NULL == (sa = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate dimension buffer");
+ }
+
+ if (NULL == maxdims) {
maxdimsP = NULL;
msa = (hsize_t *) maxdimsP;
- } /* end if */
+ }
else {
- maxdimsP = ENVPTR->GetLongArrayElements(ENVPAR maxdims, &isCopy);
- if (maxdimsP == NULL) {
- if (dimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- } /* end if */
- h5JNIFatalError(env, "H5Pget_simple_extent_dims: maxdims not pinned");
- return -1;
- } /* end if */
- mrank = (int) ENVPTR->GetArrayLength(ENVPAR maxdims);
+ PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sget_simple_extent_dims: maxdims not pinned");
+
+ if ((mrank = (int) ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims array length < 0");
+ }
+
if (rank < 0)
rank = mrank;
- else if (mrank != rank) {
- if (dimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- } /* end if */
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_simple_extent_dims: maxdims rank not same as dims");
- return -1;
- } /* end else if */
- msa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (msa == NULL) {
- if (dimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- } /* end if */
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_simple_extent_dims: maxdims not converted to hsize_t");
- return -1;
- } /* end if */
- } /* end else */
+ else if (mrank != rank)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims rank not same as dims");
- status = H5Sget_simple_extent_dims(space_id, (hsize_t *)sa, (hsize_t *)msa);
+ if (NULL == (msa = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate maximum dimension buffer");
+ }
- if (status < 0) {
- if (dimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- } /* end if */
- if (maxdimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- HDfree(msa);
- } /* end if */
- h5libraryError(env);
- return -1;
- } /* end if */
+ if ((status = H5Sget_simple_extent_dims(space_id, (hsize_t *)sa, (hsize_t *)msa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (dimsP != NULL) {
+ if (NULL != dimsP) {
for (i = 0; i < rank; i++) {
dimsP[i] = (jlong)sa[i];
} /* end for */
- HDfree(sa);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, 0);
- } /* end if */
- if (maxdimsP != NULL) {
+ }
+
+ if (NULL != maxdimsP) {
for (i = 0; i < rank; i++) {
maxdimsP[i] = (jlong)msa[i];
} /* end for */
+ }
+
+done:
+ if (msa)
HDfree(msa);
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, 0);
- } /* end if */
+ if (maxdimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, (status < 0) ? JNI_ABORT : 0);
+ if (sa)
+ HDfree(sa);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims */
@@ -523,11 +507,15 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type
{
H5S_class_t retVal = H5S_NO_CLASS;
+ UNUSED(clss);
+
if (space_id < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Sget_simple_extent_type(space_id);
+ if (H5S_NO_CLASS == (retVal = H5Sget_simple_extent_type(space_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type */
@@ -540,87 +528,81 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple
(JNIEnv *env, jclass clss, jlong space_id, jint rank, jlongArray dims, jlongArray maxdims)
{
- herr_t status = -1;
- jlong *dimsP, *maxdimsP;
- jboolean isCopy;
- hsize_t *sa;
- hsize_t *msa;
- int i;
- int drank, mrank;
- hsize_t *lp;
- jlong *jlp;
-
- if (dims == NULL) {
- h5nullArgument(env, "H5Sset_simple_extent: dims is NULL");
- return -1;
- } /* end if */
- drank = (int) ENVPTR->GetArrayLength(ENVPAR dims);
- if (drank != rank) {
- h5badArgument(env, "H5Screate_simple: dims rank is invalid");
- return -1;
- } /* end if */
- if (maxdims != NULL) {
- mrank = (int) ENVPTR->GetArrayLength(ENVPAR maxdims);
- if (mrank != rank) {
- h5badArgument(env, "H5Screate_simple: maxdims rank is invalid");
- return -1;
- } /* end if */
- } /* end if */
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Pset_simple_extent: dims not pinned");
- return -1;
- } /* end if */
- sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sset_simple_extent: dims not converted to hsize_t");
- return -1;
- } /* end if */
+ jboolean isCopy;
+ hsize_t *sa = NULL;
+ hsize_t *msa = NULL;
+ hsize_t *lp = NULL;
+ jlong *dimsP = NULL, *maxdimsP = NULL;
+ jlong *jlp = NULL;
+ jsize drank, mrank;
+ int i;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims is NULL");
+
+ if ((drank = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims array length < 0");
+ }
+
+ if (drank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: dims rank is invalid");
+
+ if (NULL != maxdims) {
+ if ((mrank = ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: maxdims array length < 0");
+ }
+
+ if (mrank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sset_extent_simple: maxdims rank is invalid");
+ }
+
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sset_extent_simple: dims not pinned");
+
+ if (NULL == (sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate dimension buffer");
+
jlp = (jlong *) dimsP;
for (i = 0; i < rank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
} /* end for */
- if (maxdims == NULL) {
+
+ if (NULL == maxdims) {
maxdimsP = NULL;
msa = (hsize_t *) maxdimsP;
- } /* end if */
+ }
else {
- maxdimsP = ENVPTR->GetLongArrayElements(ENVPAR maxdims, &isCopy);
- if (maxdimsP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5JNIFatalError(env, "H5Pset_simple_extent: maxdims not pinned");
- return -1;
- } /* end if */
- msa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (msa == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
- HDfree(sa);
- h5JNIFatalError(env, "H5Sset_simple_extent: maxdims not converted to hsize_t");
- return -1;
- } /* end if */
+ PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sset_extent_simple: maxdims not pinned");
+
+ if (NULL == (msa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate maximum dimension buffer");
+
jlp = (jlong *) maxdimsP;
for (i = 0; i < rank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
} /* end for */
- } /* end else */
+ }
- status = H5Sset_extent_simple(space_id, rank, (hsize_t *) sa, (hsize_t *) msa);
+ if ((status = H5Sset_extent_simple(space_id, rank, (hsize_t *) sa, (hsize_t *) msa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- HDfree(sa);
- if (maxdimsP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR maxdims, maxdimsP, JNI_ABORT);
+done:
+ if (msa)
HDfree(msa);
- } /* end if */
-
- if (status < 0)
- h5libraryError(env);
+ if (maxdimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, JNI_ABORT);
+ if (sa)
+ HDfree(sa);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple */
@@ -636,12 +618,14 @@ Java_hdf_hdf5lib_H5_H5Sis_1simple
{
htri_t bval = JNI_FALSE;
- bval = H5Sis_simple(space_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Sis_simple(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Sis_1simple */
@@ -654,49 +638,50 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Soffset_1simple
(JNIEnv *env, jclass clss, jlong space_id, jbyteArray offset)
{
- herr_t status;
- jbyte *P = NULL;
jboolean isCopy;
- hssize_t *sa;
+ hssize_t *sa = NULL;
+ hssize_t *lp = NULL;
size_t rank;
- size_t i;
- hssize_t *lp;
- jlong *jlp;
-
- if (offset != NULL) {
- P = ENVPTR->GetByteArrayElements(ENVPAR offset, &isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Soffset_simple: offset not pinned");
- return -1;
- } /* end if */
- i = (size_t)ENVPTR->GetArrayLength(ENVPAR offset);
- rank = i / sizeof(jlong);
- sa = lp = (hssize_t *)HDmalloc((size_t)rank * sizeof(hssize_t));
- if (sa == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR offset, P, JNI_ABORT);
- h5JNIFatalError(env, "H5Soffset_simple: offset not converted to hssize_t");
- return -1;
- } /* end if */
+ jsize i;
+ jbyte *P = NULL;
+ jlong *jlp = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL != offset) {
+ PIN_BYTE_ARRAY(ENVONLY, offset, P, &isCopy, "H5Soffset_simple: offset not pinned");
+
+ if ((i = ENVPTR->GetArrayLength(ENVONLY, offset)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Soffset_simple: offset array length < 0");
+ }
+
+ rank = (size_t) i / sizeof(jlong);
+
+ if (NULL == (sa = lp = (hssize_t *) HDmalloc((size_t)rank * sizeof(hssize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Soffset_simple: failed to allocate offset buffer");
+
jlp = (jlong *) P;
- for (i = 0; i < rank; i++) {
+ for (i = 0; (size_t) i < rank; i++) {
*lp = (hssize_t) *jlp;
lp++;
jlp++;
} /* end for */
- } /* end if */
+ }
else {
P = NULL;
sa = (hssize_t *) P;
- } /* end else */
+ }
- status = H5Soffset_simple(space_id, sa);
- if (P != NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR offset, P, JNI_ABORT);
- HDfree(sa);
- } /* end if */
+ if ((status = H5Soffset_simple(space_id, sa)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (status < 0)
- h5libraryError(env);
+done:
+ if (sa)
+ HDfree(sa);
+ if (P)
+ UNPIN_BYTE_ARRAY(ENVONLY, offset, P, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Soffset_1simple */
@@ -710,12 +695,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sextent_1copy
(JNIEnv *env, jclass clss, jlong space_id, jlong src_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Sextent_copy(space_id, src_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Sextent_copy(space_id, src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sextent_1copy */
@@ -730,12 +717,14 @@ Java_hdf_hdf5lib_H5_H5Sextent_1equal
{
htri_t bval = JNI_FALSE;
- bval = H5Sextent_equal(space_id, src_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Sextent_equal(space_id, src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Sextent_1equal */
@@ -748,12 +737,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sset_1extent_1none
(JNIEnv *env, jclass clss, jlong space_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Sset_extent_none(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Sset_extent_none(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sset_1extent_1none */
@@ -766,162 +757,131 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab
(JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start, jlongArray stride, jlongArray count, jlongArray block)
{
- herr_t status = -1;
- jlong *startP, *strideP, *countP, *blockP;
- jboolean isCopy;
- hsize_t *strt;
- hsize_t *strd;
- hsize_t *cnt;
- hsize_t *blk;
- int rank;
- int i;
- hsize_t *lp;
- jlong *jlp;
-
- if (start == NULL) {
- h5nullArgument(env, "H5Sselect_hyperslab: start is NULL");
+ jboolean isCopy;
+ hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL;
+ hsize_t *lp = NULL;
+ jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL;
+ jlong *jlp = NULL;
+ jsize start_rank, stride_rank, count_rank, block_rank;
+ int i;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == start)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: start is NULL");
+ if (NULL == count)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count is NULL");
+
+ if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: start array length < 0");
+ }
+ if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count array length < 0");
+ }
+
+ if (start_rank != count_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: count and start have different rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_hyperslab: start not pinned");
+
+ if (NULL == (strt = lp = (hsize_t *) HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate start buffer");
+
+ jlp = (jlong *) startP;
+ for (i = 0; i < start_rank; i++) {
+ *lp = (hsize_t) *jlp;
+ lp++;
+ jlp++;
} /* end if */
- else if (count == NULL) {
- h5nullArgument(env, "H5Sselect_hyperslab: count is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sselect_hyperslab: count not pinned");
+
+ if (NULL == (cnt = lp = (hsize_t *) HDmalloc((size_t)count_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate count buffer");
+
+ jlp = (jlong *) countP;
+ for (i = 0; i < count_rank; i++) {
+ *lp = (hsize_t) *jlp;
+ lp++;
+ jlp++;
} /* end if */
+
+ if (NULL == stride) {
+ strideP = NULL;
+ strd = (hsize_t *) strideP;
+ }
else {
- rank = (int) ENVPTR->GetArrayLength(ENVPAR start);
- if (rank != ENVPTR->GetArrayLength(ENVPAR count)) {
- h5badArgument(env, "H5Sselect_hyperslab: count and start have different rank!");
- return -1;
- } /* end if */
+ if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: stride array length < 0");
+ }
- startP = ENVPTR->GetLongArrayElements(ENVPAR start, &isCopy);
- if (startP == NULL) {
- h5JNIFatalError(env, "H5Sselect_hyperslab: start not pinned");
- return -1;
- } /* end if */
- strt = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sselect_hyperslab: start not converted to hsize_t");
- return -1;
- } /* end if */
+ if (stride_rank != start_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: stride and start have different rank!");
- jlp = (jlong *) startP;
- for (i = 0; i < rank; i++) {
+ PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sselect_hyperslab: stride not pinned");
+
+ if (NULL == (strd = lp = (hsize_t *) HDmalloc((size_t)stride_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate stride buffer");
+
+ jlp = (jlong *) strideP;
+ for (i = 0; i < stride_rank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
} /* end if */
+ }
- countP = ENVPTR->GetLongArrayElements(ENVPAR count, &isCopy);
- if (countP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sselect_hyperslab: count not pinned");
- return -1;
- } /* end if */
- cnt = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (cnt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sselect_hyperslab: count not converted to hsize_t");
- return -1;
- } /* end if */
+ if (NULL == block) {
+ blockP = NULL;
+ blk = (hsize_t *) blockP;
+ }
+ else {
+ if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: block array length < 0");
+ }
- jlp = (jlong *) countP;
- for (i = 0; i < rank; i++) {
+ if (block_rank != start_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_hyperslab: block and start have different rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sselect_hyperslab: block not pinned");
+
+ if (NULL == (blk = lp = (hsize_t *) HDmalloc((size_t)block_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate block buffer");
+
+ jlp = (jlong *) blockP;
+ for (i = 0; i < block_rank; i++) {
*lp = (hsize_t) *jlp;
lp++;
jlp++;
- } /* end if */
- if (stride == NULL) {
- strideP = NULL;
- strd = (hsize_t *) strideP;
- } /* end if */
- else {
- strideP = ENVPTR->GetLongArrayElements(ENVPAR stride, &isCopy);
- if (strideP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- h5badArgument(env, "H5Sselect_hyperslab: stride not pinned");
- return -1;
- } /* end if */
- strd = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strd == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sselect_hyperslab: stride not converted to hsize_t");
- return -1;
- } /* end if */
- jlp = (jlong *) strideP;
- for (i = 0; i < rank; i++) {
- *lp = (hsize_t) *jlp;
- lp++;
- jlp++;
- } /* end if */
- } /* end if */
- if (block == NULL) {
- blockP = NULL;
- blk = (hsize_t *) blockP;
- } /* end if */
- else {
- blockP = ENVPTR->GetLongArrayElements(ENVPAR block, &isCopy);
- if (blockP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- if (strd != NULL)
- free(strd);
-
- h5JNIFatalError(env, "H5Sselect_hyperslab: block not pinned");
- return -1;
- } /* end if */
- blk = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (blk == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- if (strd != NULL)
- free(strd);
-
- h5JNIFatalError(env, "H5Sget_simple_extent: block not converted to hsize_t");
- return -1;
- } /* end if */
- jlp = (jlong *) blockP;
- for (i = 0; i < rank; i++) {
- *lp = (hsize_t) *jlp;
- lp++;
- jlp++;
- } /* end for */
- } /* end else */
-
- status = H5Sselect_hyperslab(space_id, (H5S_seloper_t) op, (const hsize_t *) strt, (const hsize_t *) strd,
- (const hsize_t *) cnt, (const hsize_t *) blk);
-
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- HDfree(strt);
+ } /* end for */
+ }
+
+ if ((status = H5Sselect_hyperslab(space_id, (H5S_seloper_t) op, (const hsize_t *) strt, (const hsize_t *) strd,
+ (const hsize_t *) cnt, (const hsize_t *) blk)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (blk)
+ HDfree(blk);
+ if (blockP)
+ UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT);
+ if (strd)
+ HDfree(strd);
+ if (strideP)
+ UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT);
+ if (cnt)
HDfree(cnt);
- if (strideP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- HDfree(strd);
- } /* end if */
- if (blockP != NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, JNI_ABORT);
- HDfree(blk);
- } /* end if */
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
+ if (countP)
+ UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT);
+ if (strt)
+ HDfree(strt);
+ if (startP)
+ UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab */
@@ -935,12 +895,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Sclose
(JNIEnv *env, jclass clss, jlong space_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Sclose(space_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Sclose(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Sclose */
@@ -955,10 +917,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks
{
hssize_t retVal = -1;
- retVal = H5Sget_select_hyper_nblocks((hid_t) spaceid);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((retVal = H5Sget_select_hyper_nblocks((hid_t) spaceid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks */
@@ -973,10 +937,12 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints
{
hssize_t retVal = -1;
- retVal = H5Sget_select_elem_npoints((hid_t) spaceid);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Sget_select_elem_npoints((hid_t) spaceid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints */
@@ -989,58 +955,53 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist
(JNIEnv *env, jclass clss, jlong spaceid, jlong startblock, jlong numblocks, jlongArray buf)
{
- herr_t status = -1;
- jlong *bufP;
- jboolean isCopy;
- hsize_t *ba;
- int i;
- int rank;
- hsize_t st;
- hsize_t nb;
-
- st = (hsize_t) startblock;
- nb = (hsize_t) numblocks;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Sget_select_hyper_blocklist: buf is NULL");
- } /* end if */
- else {
- rank = H5Sget_simple_extent_ndims(spaceid);
- if (rank <= 0)
- rank = 1;
- if (ENVPTR->GetArrayLength(ENVPAR buf) < (numblocks * rank)) {
- h5badArgument(env, "H5Sget_select_hyper_blocklist: buf input array too small");
- } /* end if */
- else {
- bufP = ENVPTR->GetLongArrayElements(ENVPAR buf, &isCopy);
- if (bufP == NULL) {
- h5JNIFatalError(env, "H5Sget_select_hyper_blocklist: buf not pinned");
- } /* end if */
- else {
- ba = (hsize_t *) HDmalloc((size_t)nb * 2 * (size_t)rank * sizeof(hsize_t));
- if (ba == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
- h5JNIFatalError(env, "H5Screate-simple: buffer not converted to hsize_t");
- } /* end if */
- else {
- status = H5Sget_select_hyper_blocklist((hid_t)spaceid, st, nb, (hsize_t *)ba);
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
- free(ba);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < (numblocks * 2 * rank); i++) {
- bufP[i] = (jlong)ba[i];
- } /* end for */
- free(ba);
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *ba = NULL;
+ size_t i, buf_size;
+ jlong *bufP = NULL;
+ jsize buflen;
+ int rank;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buf is NULL");
+ if (numblocks < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: numblocks < 0");
+
+ if ((rank = H5Sget_simple_extent_ndims(spaceid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (rank == 0)
+ rank = 1;
+
+ if ((buflen = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buf array length < 0");
+ }
+
+ if (buflen < (numblocks * rank))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: buffer input array too small");
+
+ PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_hyper_blocklist: buffer not pinned");
+
+ buf_size = (size_t) numblocks * (size_t) 2 * (size_t) rank * sizeof(hsize_t);
+ if (NULL == (ba = (hsize_t *) HDmalloc(buf_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: failed to allocate block list buffer");
+
+ if ((status = H5Sget_select_hyper_blocklist((hid_t)spaceid, (hsize_t) startblock, (hsize_t) numblocks, (hsize_t *)ba)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (buf_size / sizeof(hsize_t)); i++) {
+ bufP[i] = (jlong) ba[i];
+ } /* end for */
+
+done:
+ if (ba)
+ HDfree(ba);
+ if (bufP)
+ UNPIN_LONG_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist */
@@ -1054,53 +1015,49 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist
(JNIEnv *env, jclass clss, jlong spaceid, jlong startpoint, jlong numpoints, jlongArray buf)
{
- herr_t status = -1;
- jlong *bufP;
- jboolean isCopy;
- hsize_t *ba;
- int i;
- int rank;
-
- if (buf == NULL) {
- h5nullArgument(env, "H5Sget_select_elem_pointlist: buf is NULL");
- } /* end if */
- else {
- rank = H5Sget_simple_extent_ndims(spaceid);
- if (rank <= 0)
- rank = 1;
- if (ENVPTR->GetArrayLength(ENVPAR buf) < (numpoints * rank)) {
- h5badArgument(env, "H5Sget_select_elem_pointlist: buf input array too small");
- } /* end if */
- else {
- bufP = ENVPTR->GetLongArrayElements(ENVPAR buf, &isCopy);
- if (bufP == NULL) {
- h5JNIFatalError(env, "H5Sget_select_elem_pointlist: buf not pinned");
- } /* end if */
- else {
- ba = (hsize_t *)HDmalloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t));
- if (ba == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_select_elem_pointlist: buf not converted to hsize_t");
- } /* end if */
- else {
- status = H5Sget_select_elem_pointlist((hid_t) spaceid, (hsize_t)startpoint, (hsize_t)numpoints, (hsize_t *)ba);
-
- if (status < 0) {
- HDfree(ba);
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < (numpoints * rank); i++) {
- bufP[i] = (jlong)ba[i];
- } /* end for */
- HDfree(ba);
- ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, 0);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *ba = NULL;
+ jlong *bufP = NULL;
+ jsize buflen;
+ int i, rank;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buffer is NULL");
+
+ if ((rank = H5Sget_simple_extent_ndims(spaceid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (rank == 0)
+ rank = 1;
+
+ if ((buflen = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buf array length < 0");
+ }
+
+ if (buflen < (numpoints * rank))
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: buffer input array too small");
+
+ PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_elem_pointlist: buffer not pinned");
+
+ if (NULL == (ba = (hsize_t *) HDmalloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: failed to allocate point list buffer");
+
+ if ((status = H5Sget_select_elem_pointlist((hid_t)spaceid, (hsize_t)startpoint, (hsize_t)numpoints, (hsize_t *)ba)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (numpoints * rank); i++) {
+ bufP[i] = (jlong) ba[i];
+ } /* end for */
+
+done:
+ if (ba)
+ HDfree(ba);
+ if (bufP)
+ UNPIN_LONG_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end if */
@@ -1114,70 +1071,53 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds
(JNIEnv *env, jclass clss, jlong spaceid, jlongArray start, jlongArray end)
{
- herr_t status = -1;
- jlong *startP, *endP;
- jboolean isCopy;
- hsize_t *strt;
- hsize_t *en;
- int rank;
- int i;
-
- if (start == NULL) {
- h5nullArgument(env, "H5Sget_select_bounds: start is NULL");
- } /* end if */
- else if (end == NULL) {
- h5nullArgument(env, "H5Sget_select_bounds: end is NULL");
- } /* end else if */
- else {
- startP = ENVPTR->GetLongArrayElements(ENVPAR start, &isCopy);
- if (startP == NULL) {
- h5JNIFatalError(env, "H5Sget_select_bounds: start not pinned");
- return -1;
- } /* end if */
- rank = (int) ENVPTR->GetArrayLength(ENVPAR start);
- strt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_select_bounds: start not converted to hsize_t");
- return -1;
- } /* end if */
+ jboolean isCopy;
+ hsize_t *strt = NULL;
+ hsize_t *en = NULL;
+ size_t i;
+ jlong *startP = NULL, *endP = NULL;
+ jsize rank;
+ herr_t status = FAIL;
- endP = ENVPTR->GetLongArrayElements(ENVPAR end, &isCopy);
- if (endP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- free(strt);
- h5JNIFatalError(env, "H5Sget_select_bounds: end not pinned");
- return -1;
- } /* end if */
- en = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (en == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR end, endP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sget_simple_extent: dims not converted to hsize_t");
- return -1;
- } /* end if */
+ UNUSED(clss);
- status = H5Sget_select_bounds((hid_t) spaceid, (hsize_t *) strt, (hsize_t *) en);
+ if (NULL == start)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: start is NULL");
+ if (NULL == end)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: end is NULL");
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR end, endP, JNI_ABORT);
- HDfree(strt);
- HDfree(en);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < rank; i++) {
- startP[i] = (jlong)strt[i];
- endP[i] = (jlong)en[i];
- } /* end for */
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR end, endP, 0);
- HDfree(strt);
- HDfree(en);
- } /* end else */
- } /* end else */
+ PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_select_bounds: start not pinned");
+
+ if ((rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: start array length < 0");
+ }
+
+ if (NULL == (strt = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate start buffer");
+
+ PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sget_select_bounds: end not pinned");
+
+ if (NULL == (en = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate end buffer");
+
+ if ((status = H5Sget_select_bounds((hid_t) spaceid, (hsize_t *) strt, (hsize_t *) en)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t) rank; i++) {
+ startP[i] = (jlong) strt[i];
+ endP[i] = (jlong) en[i];
+ } /* end for */
+
+done:
+ if (en)
+ HDfree(en);
+ if (endP)
+ UNPIN_LONG_ARRAY(ENVONLY, end, endP, (status < 0) ? JNI_ABORT : 0);
+ if (strt)
+ HDfree(strt);
+ if (startP)
+ UNPIN_LONG_ARRAY(ENVONLY, start, startP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds */
@@ -1191,43 +1131,37 @@ JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_H5_H5Sencode
(JNIEnv *env, jclass cls, jlong obj_id)
{
- herr_t status = -1;
- unsigned char *bufPtr;
- size_t buf_size = 0;
- jbyteArray returnedArray = NULL;
-
- if (obj_id < 0) {
- h5badArgument(env, "H5Sencode: invalid argument");
- } /* end if */
- else {
- status = H5Sencode(obj_id, NULL, &buf_size);
+ unsigned char *bufPtr = NULL;
+ size_t buf_size = 0;
+ herr_t status = FAIL;
+ jbyteArray returnedArray = NULL;
- if (status < 0) {
- h5libraryError(env);
- } /* end else if */
- else if (buf_size == 0) {
- h5badArgument(env, "H5Sencode: buf_size = 0");
- } /* end if */
- else {
- bufPtr = (unsigned char*)HDcalloc((size_t) 1, buf_size);
- if (bufPtr == NULL) {
- h5outOfMemory(env, "H5Sencode: calloc failed");
- } /* end if */
- else {
- status = H5Sencode((hid_t) obj_id, bufPtr, &buf_size);
-
- if (status < 0) {
- HDfree(bufPtr);
- h5libraryError(env);
- } /* end if */
- else {
- returnedArray = ENVPTR->NewByteArray(ENVPAR (jsize)buf_size);
- ENVPTR->SetByteArrayRegion(ENVPAR returnedArray, 0, (jsize)buf_size, (jbyte*) bufPtr);
- HDfree(bufPtr);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ UNUSED(cls);
+
+ if (obj_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: invalid object ID");
+
+ if ((status = H5Sencode(obj_id, NULL, &buf_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (buf_size == 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: buf_size = 0");
+
+ if (NULL == (bufPtr = (unsigned char *) HDcalloc((size_t) 1, buf_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sencode: failed to allocate encoding buffer");
+
+ if ((status = H5Sencode((hid_t) obj_id, bufPtr, &buf_size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (returnedArray = ENVPTR->NewByteArray(ENVONLY, (jsize) buf_size)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetByteArrayRegion(ENVONLY, returnedArray, 0, (jsize) buf_size, (jbyte *) bufPtr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (bufPtr)
+ HDfree(bufPtr);
return returnedArray;
} /* end Java_hdf_hdf5lib_H5_H5Sencode */
@@ -1241,27 +1175,23 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Sdecode
(JNIEnv *env, jclass cls, jbyteArray buf)
{
- hid_t sid = -1;
- jbyte *bufP;
- jboolean isCopy;
+ jboolean isCopy;
+ jbyte *bufP = NULL;
+ hid_t sid = H5I_INVALID_HID;
- if (buf == NULL) {
- h5nullArgument(env, "H5Sdecode: buf is NULL");
- } /* end if */
- else {
- bufP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
- if (bufP == NULL) {
- h5JNIFatalError( env, "H5Sdecode: buf not pinned");
- } /* end if */
- else {
- sid = H5Sdecode(bufP);
+ UNUSED(cls);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Sdecode: buffer is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sdecode: buffer not pinned");
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, bufP, JNI_ABORT);
+ if ((sid = H5Sdecode(bufP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (sid < 0)
- h5libraryError(env);
- } /* end else if */
- } /* end else if */
+done:
+ if (bufP)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, bufP, JNI_ABORT);
return (jlong)sid;
} /* end Java_hdf_hdf5lib_H5_H5Sdecode */
@@ -1277,12 +1207,14 @@ Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab
{
htri_t bval = JNI_FALSE;
- bval = H5Sis_regular_hyperslab((hid_t)obj_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(cls);
+ if ((bval = H5Sis_regular_hyperslab((hid_t)obj_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab */
@@ -1295,131 +1227,126 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab
(JNIEnv *env, jclass clss, jlong space_id, jlongArray start, jlongArray stride, jlongArray count, jlongArray block)
{
- herr_t status;
- jlong *startP, *strideP, *countP, *blockP;
- jboolean isCopy;
- hsize_t *strt;
- hsize_t *strd;
- hsize_t *cnt;
- hsize_t *blk;
- int rank;
- int i;
-
- if (start == NULL) {
- h5nullArgument(env, "H5Sget_regular_hyperslab: start is NULL");
- } /* end if */
- else if (count == NULL) {
- h5nullArgument(env, "H5Sget_regular_hyperslab: count is NULL");
- } /* end else if */
+ jboolean isCopy;
+ hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL;
+ jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL;
+ jsize start_rank = -1, stride_rank = -1, count_rank = -1, block_rank = -1;
+ int i, rank = -1;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (space_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: invalid dataspace ID");
+
+ if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == start) {
+ startP = NULL;
+ strt = (hsize_t *) startP;
+ }
else {
- rank = (int) ENVPTR->GetArrayLength(ENVPAR start);
- if (rank != ENVPTR->GetArrayLength(ENVPAR count)) {
- h5badArgument(env, "H5Sget_regular_hyperslab: count and start have different rank!");
- return;
- } /* end if */
+ if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: start array length < 0");
+ }
- startP = ENVPTR->GetLongArrayElements(ENVPAR start, &isCopy);
- if (startP == NULL) {
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: start not pinned");
- return;
- } /* end if */
- strt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: start not converted to hsize_t");
- return;
- } /* end if */
+ if (start_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: start rank doesn't match dataspace rank!");
- countP = ENVPTR->GetLongArrayElements(ENVPAR count, &isCopy);
- if (countP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: count not pinned");
- return;
- } /* end if */
- cnt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (cnt == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: count not converted to hsize_t");
- return;
- } /* end if */
+ PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_regular_hyperslab: start not pinned");
- strideP = ENVPTR->GetLongArrayElements(ENVPAR stride, &isCopy);
- if (strideP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- h5badArgument(env, "H5Sget_regular_hyperslab: stride not pinned");
- return;
- } /* end if */
- strd = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (strd == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: stride not converted to hsize_t");
- return;
- } /* end if */
+ if (NULL == (strt = (hsize_t *) HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate start buffer");
+ }
- blockP = ENVPTR->GetLongArrayElements(ENVPAR block, &isCopy);
- if (blockP == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- HDfree(strd);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: block not pinned");
- return;
- } /* end if */
- blk = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
- if (blk == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, JNI_ABORT);
- HDfree(cnt);
- HDfree(strt);
- HDfree(strd);
- h5JNIFatalError(env, "H5Sget_regular_hyperslab: block not converted to hsize_t");
- return;
- } /* end if */
+ if (NULL == stride) {
+ strideP = NULL;
+ strd = (hsize_t *) strideP;
+ }
+ else {
+ if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: stride array length < 0");
+ }
- status = H5Sget_regular_hyperslab(space_id, (hsize_t *) strt, (hsize_t *) strd, (hsize_t *) cnt, (hsize_t *) blk);
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, JNI_ABORT);
- HDfree(strt);
- HDfree(cnt);
- HDfree(strd);
- HDfree(blk);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < (rank); i++) {
- startP[i] = (jlong)strt[i];
- countP[i] = (jlong)cnt[i];
- strideP[i] = (jlong)strd[i];
- blockP[i] = (jlong)blk[i];
- } /* end for */
- HDfree(strt);
- HDfree(cnt);
- HDfree(strd);
- HDfree(blk);
- ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR count, countP, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR stride, strideP, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR block, blockP, 0);
- } /* end else */
- } /* end else */
+ if (stride_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: stride rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sget_regular_hyperslab: stride not pinned");
+
+ if (NULL == (strd = (hsize_t *) HDmalloc((size_t)stride_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate stride buffer");
+ }
+
+ if (NULL == count) {
+ countP = NULL;
+ cnt = (hsize_t *) countP;
+ }
+ else {
+ if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: count array length < 0");
+ }
+
+ if (count_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: count rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sget_regular_hyperslab: count not pinned");
+
+ if (NULL == (cnt = (hsize_t *) HDmalloc((size_t)count_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate count buffer");
+ }
+
+ if (NULL == block) {
+ blockP = NULL;
+ blk = (hsize_t *) blockP;
+ }
+ else {
+ if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: block array length < 0");
+ }
+
+ if (block_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: block rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sget_regular_hyperslab: block not pinned");
+
+ if (NULL == (blk = (hsize_t *) HDmalloc((size_t)block_rank * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate block buffer");
+ }
+
+ if ((status = H5Sget_regular_hyperslab(space_id, (hsize_t *) strt, (hsize_t *) strd, (hsize_t *) cnt, (hsize_t *) blk)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < start_rank; i++) {
+ startP[i] = (jlong) strt[i];
+ countP[i] = (jlong) cnt[i];
+ strideP[i] = (jlong) strd[i];
+ blockP[i] = (jlong) blk[i];
+ } /* end for */
+
+done:
+ if (blk)
+ HDfree(blk);
+ if (blockP)
+ UNPIN_LONG_ARRAY(ENVONLY, block, blockP, (status < 0) ? JNI_ABORT : 0);
+ if (cnt)
+ HDfree(cnt);
+ if (countP)
+ UNPIN_LONG_ARRAY(ENVONLY, count, countP, (status < 0) ? JNI_ABORT : 0);
+ if (strd)
+ HDfree(strd);
+ if (strideP)
+ UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, (status < 0) ? JNI_ABORT : 0);
+ if (strt)
+ HDfree(strt);
+ if (startP)
+ UNPIN_LONG_ARRAY(ENVONLY, start, startP, (status < 0) ? JNI_ABORT : 0);
+
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab */
#ifdef __cplusplus
diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c
index 307f1a5..08ddf85 100644
--- a/java/src/jni/h5tImp.c
+++ b/java/src/jni/h5tImp.c
@@ -29,7 +29,10 @@ extern "C" {
#include "h5jni.h"
#include "h5tImp.h"
-extern JavaVM *jvm;
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
+/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@@ -40,18 +43,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Topen2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist)
{
- hid_t status = -1;
- const char *tName;
+ const char *datatypeName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(name, tName);
- if (tName != NULL) {
- status = H5Topen2((hid_t)loc_id, tName, (hid_t)access_plist);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, tName);
+ PIN_JAVA_STRING(ENVONLY, name, datatypeName, NULL, "H5Topen2: datatype name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Topen2((hid_t)loc_id, datatypeName, (hid_t)access_plist)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (datatypeName)
+ UNPIN_JAVA_STRING(ENVONLY, name, datatypeName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Topen2 */
@@ -67,12 +71,14 @@ Java_hdf_hdf5lib_H5_H5Tcommitted
{
htri_t bval = JNI_FALSE;
- bval = H5Tcommitted(type_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Tcommitted(type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Tcommitted */
@@ -85,12 +91,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tcreate
(JNIEnv *env, jclass clss, jint dclass, jlong size)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Tcreate((H5T_class_t )dclass, (size_t)size);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tcreate((H5T_class_t )dclass, (size_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tcreate */
@@ -103,12 +111,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tcopy
(JNIEnv *env, jclass clss, jlong type_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tcopy((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tcopy((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tcopy */
@@ -123,12 +133,14 @@ Java_hdf_hdf5lib_H5_H5Tequal
{
htri_t bval = JNI_FALSE;
- bval = H5Tequal((hid_t)type_id1, (hid_t)type_id2);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Tequal((hid_t)type_id1, (hid_t)type_id2)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Tequal */
@@ -141,12 +153,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tlock
(JNIEnv *env, jclass clss, jlong type_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tlock((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tlock((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tlock */
@@ -161,10 +175,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1class
{
H5T_class_t retVal = H5T_NO_CLASS;
- retVal = H5Tget_class((hid_t)type_id);
- if (retVal == H5T_NO_CLASS)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5T_NO_CLASS == (retVal = H5Tget_class((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1class */
@@ -179,10 +195,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1size
{
size_t retVal = 0;
- retVal = H5Tget_size((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (!(retVal = H5Tget_size((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1size*/
@@ -196,12 +214,14 @@ Java_hdf_hdf5lib_H5_H5Tset_1size
(JNIEnv *env, jclass clss, jlong type_id, jlong size)
{
size_t tsize = (size_t)size;
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_size((hid_t)type_id, tsize);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_size((hid_t)type_id, tsize)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end ifJava_hdf_hdf5lib_H5_H5Tset_1size */
@@ -216,10 +236,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1order
{
H5T_order_t retVal = H5T_ORDER_ERROR;
- retVal = H5Tget_order((hid_t)type_id);
- if (retVal == H5T_ORDER_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5T_ORDER_ERROR == (retVal = H5Tget_order((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1order */
@@ -232,12 +254,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1order
(JNIEnv *env, jclass clss, jlong type_id, jint order)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_order((hid_t)type_id, (H5T_order_t)order);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_order((hid_t)type_id, (H5T_order_t)order)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1order */
@@ -252,10 +276,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1precision
{
size_t retVal = 0;
- retVal = H5Tget_precision((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (!(retVal = H5Tget_precision((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1precision */
@@ -270,10 +296,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1precision_1long
{
size_t retVal = 0;
- retVal = H5Tget_precision((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if (!(retVal = H5Tget_precision((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1precision_1long */
@@ -286,12 +314,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1precision
(JNIEnv *env, jclass clss, jlong type_id, jlong precision)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_precision((hid_t)type_id, (size_t)precision);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_precision((hid_t)type_id, (size_t)precision)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1precision */
@@ -306,10 +336,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1offset
{
int retVal = -1;
- retVal = H5Tget_offset((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((retVal = H5Tget_offset((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1offset */
@@ -322,12 +354,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1offset
(JNIEnv *env, jclass clss, jlong type_id, jlong offset)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tset_offset((hid_t)type_id, (size_t)offset);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tset_offset((hid_t)type_id, (size_t)offset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1offset */
@@ -340,29 +374,23 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1pad
(JNIEnv *env, jclass clss, jlong type_id, jintArray pad)
{
- herr_t status = -1;
- jboolean isCopy;
- jint *P;
-
- if (pad == NULL) {
- h5nullArgument(env, "H5Tget_pad: pad is NULL");
- } /* end if */
- else {
- P = ENVPTR->GetIntArrayElements(ENVPAR pad, &isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Tget_pad: pad not pinned");
- } /* end if */
- else {
- status = H5Tget_pad((hid_t)type_id, (H5T_pad_t *)&(P[0]), (H5T_pad_t *)&(P[1]));
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR pad, P, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR pad, P, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jint *P = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == pad)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_pad: pad is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, pad, P, &isCopy, "H5Tget_pad: pad not pinned");
+
+ if ((status = H5Tget_pad((hid_t)type_id, (H5T_pad_t *)&(P[0]), (H5T_pad_t *)&(P[1]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (P)
+ UNPIN_INT_ARRAY(ENVONLY, pad, P, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1pad */
@@ -376,12 +404,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1pad
(JNIEnv *env, jclass clss, jlong type_id, jint lsb, jint msb)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_pad((hid_t)type_id, (H5T_pad_t)lsb, (H5T_pad_t)msb);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_pad((hid_t)type_id, (H5T_pad_t)lsb, (H5T_pad_t)msb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1pad */
@@ -396,10 +426,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1sign
{
H5T_sign_t retVal = H5T_SGN_ERROR;
- retVal = H5Tget_sign((hid_t)type_id);
- if (retVal == H5T_SGN_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5T_SGN_ERROR == (retVal = H5Tget_sign((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1sign */
@@ -412,12 +444,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1sign
(JNIEnv *env, jclass clss, jlong type_id, jint sign)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tset_sign((hid_t)type_id, (H5T_sign_t)sign);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tset_sign((hid_t)type_id, (H5T_sign_t)sign)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1sign */
@@ -430,32 +464,31 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1fields_1int
(JNIEnv *env, jclass clss, jlong type_id, jintArray fields)
{
- herr_t status;
- jboolean isCopy;
- jint *P;
-
- if (fields == NULL) {
- h5nullArgument(env, "H5Tget_fields: fields is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR fields) < 5) {
- h5badArgument(env, "H5Tget_fields: fields input array < order 5");
- } /* end else if */
- else {
- P = ENVPTR->GetIntArrayElements(ENVPAR fields, &isCopy);
- if (P == NULL) {
- h5JNIFatalError(env, "H5Tget_fields: fields not pinned");
- } /* end if */
- else {
- status = H5Tget_fields((hid_t)type_id, (size_t *)&(P[0]), (size_t *)&(P[1]), (size_t *)&(P[2]), (size_t *)&(P[3]), (size_t *)&(P[4]));
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR fields, P, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR fields, P, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jsize arrLen;
+ jint *P = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == fields)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields_int: fields is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, fields)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields_int: fields array length < 0");
+ }
+ if (arrLen < 5)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields_int: fields input array < order 5");
+
+ PIN_INT_ARRAY(ENVONLY, fields, P, &isCopy, "H5Tget_fields_int: fields not pinned");
+
+ if ((status = H5Tget_fields((hid_t)type_id, (size_t *)&(P[0]), (size_t *)&(P[1]), (size_t *)&(P[2]), (size_t *)&(P[3]), (size_t *)&(P[4]))) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (P)
+ UNPIN_INT_ARRAY(ENVONLY, fields, P, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1fields_1int */
@@ -469,56 +502,57 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1fields
(JNIEnv *env, jclass clss, jlong type_id, jlongArray fields)
{
- herr_t status;
- jboolean isCopy;
- jlong *fieldsArray;
-
- if (fields == NULL) {
- h5nullArgument(env, "H5Tget_fields: fields is NULL");
- } /* end if */
- else if (ENVPTR->GetArrayLength(ENVPAR fields) < 5) {
- h5badArgument(env, "H5Tget_fields: fields input array < order 5");
- } /* end else if */
- else {
- fieldsArray = ENVPTR->GetLongArrayElements(ENVPAR fields, &isCopy);
- if (fieldsArray == NULL) {
- h5JNIFatalError(env, "H5Tget_fields: fields not pinned");
- } /* end if */
- else {
- { /* direct cast (size_t *)variable fails on 32-bit environment */
- size_t spos_t = 0;
- size_t epos_t = 0;
- size_t esize_t = 0;
- size_t mpos_t = 0;
- size_t msize_t = 0;
- long long fields_temp = *(&fieldsArray[0]);
- spos_t = (size_t)fields_temp;
- fields_temp = *(&fieldsArray[1]);
- epos_t = (size_t)fields_temp;
- fields_temp = *(&fieldsArray[2]);
- esize_t = (size_t)fields_temp;
- fields_temp = *(&fieldsArray[3]);
- mpos_t = (size_t)fields_temp;
- fields_temp = *(&fieldsArray[4]);
- msize_t = (size_t)fields_temp;
-
- status = H5Tget_fields((hid_t)type_id, &spos_t, &epos_t, &esize_t, &mpos_t, &msize_t);
-
- *(&fieldsArray[0]) = (jlong)spos_t;
- *(&fieldsArray[1]) = (jlong)epos_t;
- *(&fieldsArray[2]) = (jlong)esize_t;
- *(&fieldsArray[3]) = (jlong)mpos_t;
- *(&fieldsArray[4]) = (jlong)msize_t;
- } /* end direct cast special handling */
-
- if (status < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR fields, fieldsArray, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseLongArrayElements(ENVPAR fields, fieldsArray, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jlong *fieldsArray = NULL;
+ jsize arrLen;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == fields)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields: fields is NULL");
+
+ if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, fields)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields: fields array length < 0");
+ }
+ if (arrLen < 5)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_fields: fields input array < order 5");
+
+ PIN_LONG_ARRAY(ENVONLY, fields, fieldsArray, &isCopy, "H5Tget_fields: fields not pinned");
+
+ { /* Direct cast (size_t *)variable fails on 32-bit environment */
+ size_t spos_t = 0;
+ size_t epos_t = 0;
+ size_t esize_t = 0;
+ size_t mpos_t = 0;
+ size_t msize_t = 0;
+ long long fields_temp = *(&fieldsArray[0]);
+ spos_t = (size_t)fields_temp;
+ fields_temp = *(&fieldsArray[1]);
+ epos_t = (size_t)fields_temp;
+ fields_temp = *(&fieldsArray[2]);
+ esize_t = (size_t)fields_temp;
+ fields_temp = *(&fieldsArray[3]);
+ mpos_t = (size_t)fields_temp;
+ fields_temp = *(&fieldsArray[4]);
+ msize_t = (size_t)fields_temp;
+
+ if ((status = H5Tget_fields((hid_t)type_id, &spos_t, &epos_t, &esize_t, &mpos_t, &msize_t)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ *(&fieldsArray[0]) = (jlong)spos_t;
+ *(&fieldsArray[1]) = (jlong)epos_t;
+ *(&fieldsArray[2]) = (jlong)esize_t;
+ *(&fieldsArray[3]) = (jlong)mpos_t;
+ *(&fieldsArray[4]) = (jlong)msize_t;
+ } /* end direct cast special handling */
+
+done:
+ if (fieldsArray)
+ UNPIN_LONG_ARRAY(ENVONLY, fields, fieldsArray, (status < 0) ? JNI_ABORT : 0);
+
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1fields */
/*
@@ -531,8 +565,13 @@ Java_hdf_hdf5lib_H5_H5Tset_1fields
(JNIEnv *env, jclass clss, jlong type_id, jlong spos, jlong epos,
jlong esize, jlong mpos, jlong msize)
{
+ UNUSED(clss);
+
if (H5Tset_fields((hid_t)type_id, (size_t)spos, (size_t)epos, (size_t)esize, (size_t)mpos, (size_t)msize) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1fields */
/*
@@ -546,10 +585,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1ebias
{
size_t retVal = 0;
- retVal = H5Tget_ebias((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (!(retVal = H5Tget_ebias((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1ebias */
@@ -564,10 +605,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1ebias_1long
{
size_t retVal = 0;
- retVal = H5Tget_ebias((hid_t)type_id);
- if (retVal == 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if (!(retVal = H5Tget_ebias((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1ebias_1long */
@@ -580,12 +623,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1ebias
(JNIEnv *env, jclass clss, jlong type_id, jlong ebias)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_ebias((hid_t)type_id, (size_t)ebias);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_ebias((hid_t)type_id, (size_t)ebias)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1ebias */
@@ -600,10 +645,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1norm
{
H5T_norm_t retVal = H5T_NORM_ERROR;
- retVal = H5Tget_norm((hid_t)type_id);
- if (retVal == H5T_NORM_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5T_NORM_ERROR == (retVal = H5Tget_norm((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1norm */
@@ -616,12 +663,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1norm
(JNIEnv *env, jclass clss, jlong type_id, jint norm)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tset_norm((hid_t)type_id, (H5T_norm_t )norm);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tset_norm((hid_t)type_id, (H5T_norm_t )norm)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1norm */
@@ -636,10 +685,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1inpad
{
H5T_pad_t retVal = H5T_PAD_ERROR;
- retVal = H5Tget_inpad((hid_t)type_id );
- if (retVal == H5T_PAD_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5T_PAD_ERROR == (retVal = H5Tget_inpad((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1inpad */
@@ -652,12 +703,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1inpad
(JNIEnv *env, jclass clss, jlong type_id, jint inpad)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_inpad((hid_t)type_id, (H5T_pad_t) inpad);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_inpad((hid_t)type_id, (H5T_pad_t) inpad)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1inpad */
@@ -672,10 +725,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1cset
{
H5T_cset_t retVal = H5T_CSET_ERROR;
- retVal = H5Tget_cset((hid_t)type_id);
- if (retVal == H5T_CSET_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+ if (H5T_CSET_ERROR == (retVal = H5Tget_cset((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1cset */
@@ -688,12 +743,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1cset
(JNIEnv *env, jclass clss, jlong type_id, jint cset)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tset_cset((hid_t)type_id, (H5T_cset_t)cset);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tset_cset((hid_t)type_id, (H5T_cset_t)cset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1cset */
@@ -708,10 +765,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1strpad
{
H5T_str_t retVal = H5T_STR_ERROR;
- retVal = H5Tget_strpad((hid_t)type_id);
- if (retVal == H5T_STR_ERROR)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5T_STR_ERROR == (retVal = H5Tget_strpad((hid_t)type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1strpad */
@@ -724,12 +783,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1strpad
(JNIEnv *env, jclass clss, jlong type_id, jint strpad)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
- retVal = H5Tset_strpad((hid_t)type_id, (H5T_str_t)strpad);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tset_strpad((hid_t)type_id, (H5T_str_t)strpad)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1strpad */
@@ -744,10 +805,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1nmembers
{
int retVal = -1;
- retVal = H5Tget_nmembers((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((retVal = H5Tget_nmembers((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1nmembers */
@@ -760,17 +823,20 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1name
(JNIEnv *env, jclass clss, jlong type_id, jint field_idx)
{
- char *name;
- jstring str = NULL;
+ char *member_name = NULL;
+ jstring str = NULL;
- name = H5Tget_member_name((hid_t)type_id, (unsigned)field_idx);
- if (name != NULL) {
- str = ENVPTR->NewStringUTF(ENVPAR name);
- H5free_memory(name);
+ UNUSED(clss);
- if (str == NULL)
- h5JNIFatalError(env, "H5Tget_member_name: returned string not created");
- } /* end if */
+ if (NULL == (member_name = H5Tget_member_name((hid_t)type_id, (unsigned)field_idx)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, member_name)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (member_name)
+ H5free_memory(member_name);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1name */
@@ -784,18 +850,19 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1index
(JNIEnv *env, jclass clss, jlong type_id, jstring field_name)
{
- const char *tName;
+ const char *datatypeName = NULL;
int index = -1;
- PIN_JAVA_STRING(field_name, tName);
- if (tName != NULL) {
- index = H5Tget_member_index((hid_t)type_id, tName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(field_name, tName);
+ PIN_JAVA_STRING(ENVONLY, field_name, datatypeName, NULL, "H5Tget_member_index: datatype name not pinned");
- if (index < 0)
- h5libraryError(env);
- }
+ if ((index = H5Tget_member_index((hid_t)type_id, datatypeName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (datatypeName)
+ UNPIN_JAVA_STRING(ENVONLY, field_name, datatypeName);
return (jint)index;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1index */
@@ -809,12 +876,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tget_1member_1type
(JNIEnv *env, jclass clss, jlong type_id, jint field_idx)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tget_member_type((hid_t)type_id, (unsigned)field_idx);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tget_member_type((hid_t)type_id, (unsigned)field_idx)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tget_1member_1type */
@@ -827,6 +896,9 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1offset
(JNIEnv *env, jclass clss, jlong type_id, jint memno)
{
+ UNUSED(env);
+ UNUSED(clss);
+
return (jlong)H5Tget_member_offset((hid_t)type_id, (unsigned)memno);
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1offset */
@@ -839,12 +911,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1class
(JNIEnv *env, jclass clss, jlong type_id, jint memno)
{
- int retVal = -1;
+ H5T_class_t retVal = H5T_NO_CLASS;
+
+ UNUSED(clss);
- retVal = H5Tget_member_class((hid_t)type_id, (unsigned)memno);
- if (retVal < 0)
- h5libraryError(env);
+ if (H5T_NO_CLASS == (retVal = H5Tget_member_class((hid_t)type_id, (unsigned)memno)))
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1class */
@@ -857,18 +931,20 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tinsert
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jlong offset, jlong field_id)
{
- herr_t status = -1;
- const char *tName;
+ const char *datatypeName = NULL;
long off = (long)offset;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, tName);
- if (tName != NULL) {
- status = H5Tinsert((hid_t)type_id, tName, (size_t)off, field_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name,tName);
- if (status < 0)
- h5libraryError(env);
- }
+ PIN_JAVA_STRING(ENVONLY, name, datatypeName, NULL, "H5Tinsert: datatype name not pinned");
+
+ if ((status = H5Tinsert((hid_t)type_id, datatypeName, (size_t)off, field_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (datatypeName)
+ UNPIN_JAVA_STRING(ENVONLY, name, datatypeName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tinsert */
@@ -882,12 +958,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tpack
(JNIEnv *env, jclass clss, jlong type_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tpack((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tpack((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Tpack */
@@ -900,12 +978,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Tclose
(JNIEnv *env, jclass clss, jlong type_id)
{
- herr_t retVal = -1;
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- retVal = H5Tclose((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tclose((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tclose */
@@ -918,12 +998,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tvlen_1create
(JNIEnv *env, jclass clss, jlong base_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Tvlen_create((hid_t)base_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tvlen_create((hid_t)base_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tvlen_1create */
@@ -936,18 +1018,19 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tset_1tag
(JNIEnv *env, jclass clss, jlong type, jstring tag)
{
- herr_t status = -1;
- const char *tagP;
+ const char *tagBuf = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(tag, tagP);
- if (tagP != NULL) {
- status = H5Tset_tag((hid_t)type, tagP);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(tag,tagP);
+ PIN_JAVA_STRING(ENVONLY, tag, tagBuf, NULL, "H5Tset_tag: tag buffer not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Tset_tag((hid_t)type, tagBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (tagBuf)
+ UNPIN_JAVA_STRING(ENVONLY, tag, tagBuf);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tset_1tag */
@@ -961,17 +1044,20 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1tag
(JNIEnv *env, jclass clss, jlong type)
{
- jstring str = NULL;
- char *tag;
+ jstring str = NULL;
+ char *tag = NULL;
- tag = H5Tget_tag((hid_t)type);
- if (tag != NULL) {
- str = ENVPTR->NewStringUTF(ENVPAR tag);
- H5free_memory(tag);
+ UNUSED(clss);
+
+ if (NULL == (tag = H5Tget_tag((hid_t)type)))
+ H5_LIBRARY_ERROR(ENVONLY);
- if (str == NULL)
- h5JNIFatalError(env, "H5Tget_tag: returned string not created");
- } /* end if */
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, tag)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (tag)
+ H5free_memory(tag);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1tag */
@@ -985,12 +1071,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tget_1super
(JNIEnv *env, jclass clss, jlong type_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
- retVal = H5Tget_super((hid_t)type_id);
- if (retVal < 0)
- h5libraryError(env);
+ if ((retVal = H5Tget_super((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tget_1super */
@@ -1003,12 +1091,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tenum_1create
(JNIEnv *env, jclass clss, jlong base_id)
{
- hid_t retVal = -1;
+ hid_t retVal = H5I_INVALID_HID;
- retVal = H5Tenum_create((hid_t)base_id);
- if (retVal < 0)
- h5libraryError(env);
+ UNUSED(clss);
+ if ((retVal = H5Tenum_create((hid_t)base_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tenum_1create */
@@ -1021,32 +1111,28 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1insert_1int
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jintArray value)
{
- herr_t status = -1;
- jint *intP;
- const char *nameP;
- jboolean isCopy2;
-
- if (value == NULL ) {
- h5nullArgument(env, "H5Tenum_insert: value is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, nameP);
- if (nameP != NULL) {
- intP = ENVPTR->GetIntArrayElements(ENVPAR value, &isCopy2);
- if (intP == NULL) {
- h5JNIFatalError(env, "H5Tenum_insert: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_insert((hid_t)type_id, nameP, intP);
-
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, JNI_ABORT);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- UNPIN_JAVA_STRING(name, nameP);
- }
- } /* end else */
+ const char *memberName = NULL;
+ jboolean isCopy;
+ jint *intBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_insert: value is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, memberName, NULL, "H5Tenum_insert: member name not pinned");
+
+ PIN_INT_ARRAY(ENVONLY, value, intBuf, &isCopy, "H5Tenum_insert: int buffer not pinned");
+
+ if ((status = H5Tenum_insert((hid_t)type_id, memberName, intBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (intBuf)
+ UNPIN_INT_ARRAY(ENVONLY, value, intBuf, (status < 0) ? JNI_ABORT : 0);
+ if (memberName)
+ UNPIN_JAVA_STRING(ENVONLY, name, memberName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1insert_1int */
@@ -1060,32 +1146,28 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1insert
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jbyteArray value)
{
- herr_t status = -1;
- jbyte *byteP;
- const char *nameP;
- jboolean isCopy2;
-
- if (value == NULL) {
- h5nullArgument(env, "H5Tenum_insert: value is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, nameP);
- if (nameP != NULL) {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy2);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Tenum_insert: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_insert((hid_t)type_id, nameP, byteP);
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- UNPIN_JAVA_STRING(name, nameP);
- }
- } /* end else */
+ const char *memberName = NULL;
+ jboolean isCopy;
+ jbyte *memberBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_insert: value is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, memberName, NULL, "H5Tenum_insert: member name not pinned");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, memberBuf, &isCopy, "H5Tenum_insert: member buffer not pinned");
+
+ if ((status = H5Tenum_insert((hid_t)type_id, memberName, memberBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (memberBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, memberBuf, (status < 0) ? JNI_ABORT : 0);
+ if (memberName)
+ UNPIN_JAVA_STRING(ENVONLY, name, memberName);
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1insert */
/*
@@ -1098,51 +1180,39 @@ Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int
(JNIEnv *env, jclass clss, jlong type_id, jintArray value, jobjectArray name,
jint size)
{
- herr_t status = -1;
- jint *intP;
- char *nameP;
- jboolean isCopy;
- jstring str;
-
- if (size <= 0) {
- h5badArgument(env, "H5Tenum_nameof: name size < 0");
- } /* end if */
- else if (value == NULL) {
- h5nullArgument(env, "H5Tenum_nameof: value is NULL");
- } /* end if */
- else {
- nameP = (char*)HDmalloc(sizeof(char) * (size_t)size);
- if (nameP == NULL) {
- /* exception -- out of memory */
- h5outOfMemory(env, "H5Tenum_nameof: malloc name size");
- } /* end if */
- else {
- intP = ENVPTR->GetIntArrayElements(ENVPAR value, &isCopy);
- if (intP == NULL) {
- HDfree(nameP);
- h5JNIFatalError(env, "H5Tenum_nameof: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_nameof((hid_t)type_id, intP, nameP, (size_t)size);
-
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, JNI_ABORT);
-
- if (status < 0) {
- HDfree(nameP);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR nameP);
- HDfree(nameP);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Tenum_nameof: return array not created");
- } /* end if */
- else
- ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jstring str;
+ jint *intP = NULL;
+ char *nameP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof_int: value is NULL");
+ if (size <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof_int: name size < 0");
+
+ if (NULL == (nameP = (char *) HDmalloc(sizeof(char) * (size_t)size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tenum_nameof_int: failed to allocate name buffer");
+
+ PIN_INT_ARRAY(ENVONLY, value, intP, &isCopy, "H5Tenum_nameof_int: value not pinned");
+
+ if ((status = H5Tenum_nameof((hid_t)type_id, intP, nameP, (size_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nameP[(size_t)size - 1] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, nameP)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (intP)
+ UNPIN_INT_ARRAY(ENVONLY, value, intP, JNI_ABORT);
+ if (nameP)
+ HDfree(nameP);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int */
@@ -1156,49 +1226,36 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1nameof
(JNIEnv *env, jclass clss, jlong type_id, jbyteArray value, jlong size)
{
- herr_t status = -1;
- jbyte *byteP;
- char *nameP;
- jboolean isCopy;
- jstring str = NULL;
-
- if (size <= 0) {
- h5badArgument(env, "H5Tenum_nameof: name size < 0");
- } /* end if */
- else if (value == NULL ) {
- h5nullArgument(env, "H5Tenum_nameof: value is NULL");
- } /* end if */
- else {
- nameP = (char*)HDmalloc(sizeof(char) * (size_t)size);
- if (nameP == NULL) {
- h5outOfMemory(env, "H5Tenum_nameof: malloc name size");
- } /* end if */
- else {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy);
- if (byteP == NULL) {
- HDfree(nameP);
- h5JNIFatalError(env, "H5Tenum_nameof: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_nameof((hid_t)type_id, byteP, nameP, (size_t)size);
-
- /* free the buffer without copying back */
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
-
- if (status < 0) {
- HDfree(nameP);
- h5libraryError(env);
- } /* end if */
- else {
- str = ENVPTR->NewStringUTF(ENVPAR nameP);
- HDfree(nameP);
- if (str == NULL) {
- h5JNIFatalError(env, "H5Tenum_nameof: return array not created");
- } /* end if */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jstring str = NULL;
+ jbyte *byteP = NULL;
+ char *nameP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof: value is NULL");
+ if (size <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof: name size < 0");
+
+ if (NULL == (nameP = (char *) HDmalloc(sizeof(char) * (size_t)size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tenum_nameof: failed to allocate name buffer");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Tenum_nameof: value not pinned");
+
+ if ((status = H5Tenum_nameof((hid_t)type_id, byteP, nameP, (size_t)size)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ nameP[(size_t)size - 1] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, nameP)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+done:
+ if (byteP)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, JNI_ABORT);
+ if (nameP)
+ HDfree(nameP);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1nameof */
@@ -1212,34 +1269,28 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1valueof_1int
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jintArray value)
{
- herr_t status = -1;
- jint *intP;
- const char *nameP;
- jboolean isCopy2;
-
- if (value == NULL) {
- h5nullArgument(env, "H5Tenum_valueof: value is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, nameP);
- if (nameP != NULL) {
- intP = ENVPTR->GetIntArrayElements(ENVPAR value, &isCopy2);
- if (intP == NULL) {
- h5JNIFatalError(env, "H5Tenum_valueof: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_valueof((hid_t)type_id, nameP, intP);
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, 0);
- } /* end else */
- UNPIN_JAVA_STRING(name, nameP);
- }
- } /* end else */
+ const char *enumValue = NULL;
+ jboolean isCopy;
+ jint *enumValueBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_valueof_int: value is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, enumValue, NULL, "H5Tenum_valueof_int: enum value not pinned");
+
+ PIN_INT_ARRAY(ENVONLY, value, enumValueBuf, &isCopy, "H5Tenum_valueof_int: enum value buffer not pinned");
+
+ if ((status = H5Tenum_valueof((hid_t)type_id, enumValue, enumValueBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (enumValueBuf)
+ UNPIN_INT_ARRAY(ENVONLY, value, enumValueBuf, (status < 0) ? JNI_ABORT : 0);
+ if (enumValue)
+ UNPIN_JAVA_STRING(ENVONLY, name, enumValue);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1valueof_1int */
@@ -1253,34 +1304,28 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tenum_1valueof
(JNIEnv *env, jclass clss, jlong type_id, jstring name, jbyteArray value)
{
- herr_t status = -1;
- jbyte *byteP;
- const char *nameP;
- jboolean isCopy2;
-
- if (value == NULL) {
- h5nullArgument(env, "H5Tenum_valueof: value is NULL");
- } /* end if */
- else {
- PIN_JAVA_STRING(name, nameP);
- if (nameP != NULL) {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy2);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Tenum_valueof: value not pinned");
- } /* end if */
- else {
- status = H5Tenum_valueof((hid_t)type_id, nameP, byteP);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, 0);
- } /* end else */
- UNPIN_JAVA_STRING(name, nameP);
- }
- } /* end else */
+ const char *enumValue = NULL;
+ jboolean isCopy;
+ jbyte *enumValueBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_valueof: value is NULL");
+
+ PIN_JAVA_STRING(ENVONLY, name, enumValue, NULL, "H5Tenum_valueof: enum value not pinned");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, enumValueBuf, &isCopy, "H5Tenum_valueof: enum value buffer not pinned");
+
+ if ((status = H5Tenum_valueof((hid_t)type_id, enumValue, enumValueBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (enumValueBuf)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, enumValueBuf, (status < 0) ? JNI_ABORT : 0);
+ if (enumValue)
+ UNPIN_JAVA_STRING(ENVONLY, name, enumValue);
} /* end Java_hdf_hdf5lib_H5_H5Tenum_1valueof */
/*
@@ -1292,30 +1337,23 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1value_1int
(JNIEnv *env, jclass clss, jlong type_id, jint membno, jintArray value)
{
- herr_t status = -1;
- jint *intP;
- jboolean isCopy;
-
- if (value == NULL) {
- h5nullArgument(env, "H5Tget_member_value: value is NULL");
- } /* end if */
- else {
- intP = ENVPTR->GetIntArrayElements(ENVPAR value, &isCopy);
- if (intP == NULL) {
- h5JNIFatalError(env, "H5Tget_member_value: value not pinned");
- } /* end if */
- else {
- status = H5Tget_member_value((hid_t)type_id, (unsigned)membno, intP);
-
-
- if (status < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseIntArrayElements(ENVPAR value, intP, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jint *intP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_member_value: value is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, value, intP, &isCopy, "H5Tget_member_value: value not pinned");
+
+ if ((status = H5Tget_member_value((hid_t)type_id, (unsigned)membno, intP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (intP)
+ UNPIN_INT_ARRAY(ENVONLY, value, intP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1value_1int */
@@ -1329,29 +1367,23 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1member_1value
(JNIEnv *env, jclass clss, jlong type_id, jint membno, jbyteArray value)
{
- herr_t status = -1;
- jbyte *byteP;
- jboolean isCopy;
-
- if (value == NULL) {
- h5nullArgument( env, "H5Tget_member_value: value is NULL");
- } /* end if */
- else {
- byteP = ENVPTR->GetByteArrayElements(ENVPAR value,&isCopy);
- if (byteP == NULL) {
- h5JNIFatalError(env, "H5Tget_member_value: value not pinned");
- } /* end if */
- else {
- status = H5Tget_member_value((hid_t)type_id, (unsigned)membno, byteP);
-
- if (status < 0) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else
- ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, 0);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jbyte *byteP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == value)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_member_value: value is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Tget_member_value: value not pinned");
+
+ if ((status = H5Tget_member_value((hid_t)type_id, (unsigned)membno, byteP)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (byteP)
+ UNPIN_BYTE_ARRAY(ENVONLY, value, byteP, (status < 0) ? JNI_ABORT : 0);
} /* end Java_hdf_hdf5lib_H5_H5Tget_1member_1value */
/*
@@ -1365,10 +1397,12 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1ndims
{
int ndims = -1;
- ndims = H5Tget_array_ndims((hid_t)type_id);
- if (ndims < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((ndims = H5Tget_array_ndims((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)ndims;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1array_1ndims */
@@ -1381,41 +1415,41 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1array_1dims
(JNIEnv *env, jclass clss, jlong type_id, jintArray dims, jintArray perms)
{
- int ndims = -1;
- int dlen;
- int i;
- jint *dimsP;
- hsize_t *cdims = NULL;
- jboolean isCopy;
-
- if (dims == NULL) {
- h5nullArgument( env, "H5Tget_array_dims: value is NULL");
- } /* end if */
- else {
- dimsP = ENVPTR->GetIntArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Tget_array_dims: dimsP not pinned");
- } /* end if */
- else {
- dlen = ENVPTR->GetArrayLength(ENVPAR dims);
- cdims = (hsize_t*)HDmalloc((size_t)dlen * sizeof(hsize_t));
-
- ndims = H5Tget_array_dims2((hid_t)type_id, cdims);
-
- if (ndims < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < dlen; i++) {
- dimsP[i] = (jint) cdims[i];
- } /* end for */
- ENVPTR->ReleaseIntArrayElements(ENVPAR dims, dimsP, 0);
-
- if (cdims) HDfree(cdims);
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *cdims = NULL;
+ size_t i;
+ jsize dlen;
+ jint *dimsP = NULL;
+ int ndims = -1;
+
+ UNUSED(clss);
+ UNUSED(perms);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tget_array_dims: dims array is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Tget_array_dims: dimsP not pinned");
+
+ if ((dlen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_array_dims: dims array length < 0");
+ }
+
+ if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tget_array_dims: failed to allocate dimension buffer");
+
+ if ((ndims = H5Tget_array_dims2((hid_t)type_id, cdims)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t) dlen; i++) {
+ dimsP[i] = (jint) cdims[i];
+ } /* end for */
+
+done:
+ if (cdims)
+ HDfree(cdims);
+ if (dimsP)
+ UNPIN_INT_ARRAY(ENVONLY, dims, dimsP, (ndims < 0) ? JNI_ABORT : 0);
return (jint)ndims;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1array_1dims */
@@ -1431,12 +1465,14 @@ Java_hdf_hdf5lib_H5_H5Tis_1variable_1str
{
htri_t bval = JNI_FALSE;
- bval = H5Tis_variable_str((hid_t)type_id);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Tis_variable_str((hid_t)type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Tis_1variable_1str */
@@ -1449,13 +1485,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tget_1native_1type
(JNIEnv *env, jclass clss, jlong type_id, jint direction)
{
- hid_t native_tid = -1;
+ hid_t native_tid = H5I_INVALID_HID;
- native_tid = H5Tget_native_type((hid_t)type_id, (H5T_direction_t)direction);
+ UNUSED(clss);
- if (native_tid < 0)
- h5libraryError(env);
+ if ((native_tid = H5Tget_native_type((hid_t)type_id, (H5T_direction_t)direction)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)native_tid;
} /* end Java_hdf_hdf5lib_H5__1H5Tget_1native_1type */
@@ -1470,12 +1507,14 @@ Java_hdf_hdf5lib_H5_H5Tdetect_1class
{
htri_t bval = JNI_FALSE;
- bval = H5Tdetect_class((hid_t)type_id, (H5T_class_t)dtype_class);
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if ((bval = H5Tdetect_class((hid_t)type_id, (H5T_class_t)dtype_class)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Tdetect_1class */
@@ -1489,18 +1528,19 @@ Java_hdf_hdf5lib_H5_H5Tcommit
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type,
jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
{
- herr_t status = -1;
- const char *tName;
+ const char *datatypeName = NULL;
+ herr_t status = FAIL;
- PIN_JAVA_STRING(name, tName);
- if (tName != NULL) {
- status = H5Tcommit2((hid_t)loc_id, tName, (hid_t)type, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(name, tName);
+ PIN_JAVA_STRING(ENVONLY, name, datatypeName, NULL, "H5Tcommit: datatype name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5Tcommit2((hid_t)loc_id, datatypeName, (hid_t)type, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (datatypeName)
+ UNPIN_JAVA_STRING(ENVONLY, name, datatypeName);
} /* end Java_hdf_hdf5lib_H5_H5Tcommit */
/*
@@ -1512,45 +1552,45 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Tarray_1create2
(JNIEnv *env, jclass clss, jlong base_id, jint rank, jlongArray dims)
{
- hid_t retVal = -1;
- jlong *dimsP;
- int dlen;
- hsize_t *cdims = NULL;
- jboolean isCopy;
- int i;
-
- if (rank <= 0) {
- h5badArgument(env, "H5Tarray_create: rank is < 1");
- } /* end if */
- else if (dims == NULL) {
- h5nullArgument(env, "H5Tarray_create: dims is NULL");
- } /* end else if */
- else {
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError( env, "H5Tarray_create: dimsP not pinned");
- } /* end if */
- else {
- dlen = ENVPTR->GetArrayLength(ENVPAR dims);
- if (dlen != rank) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- } /* end if */
- else {
- cdims = (hsize_t*)HDmalloc((size_t)dlen * sizeof(hsize_t));
- for (i = 0; i < dlen; i++) {
- cdims[i] = (hsize_t)dimsP[i];
- } /* end for */
-
- retVal = H5Tarray_create2((hid_t)base_id, (unsigned)rank, (const hsize_t*)cdims);
-
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, 0);
-
- HDfree(cdims);
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *cdims = NULL;
+ size_t i;
+ jlong *dimsP = NULL;
+ jsize dlen;
+ hid_t retVal = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: dims is NULL");
+ if (rank <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: rank is < 1");
+
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Tarray_create: dimsP not pinned");
+
+ if ((dlen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: dims array length < 0");
+ }
+
+ if (dlen != rank)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_create: dimension array length != array rank");
+
+ if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_create: failed to allocate dimension buffer");
+
+ for (i = 0; i < (size_t) dlen; i++) {
+ cdims[i] = (hsize_t)dimsP[i];
+ } /* end for */
+
+ if ((retVal = H5Tarray_create2((hid_t)base_id, (unsigned)rank, (const hsize_t *)cdims)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (cdims)
+ HDfree(cdims);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (retVal < 0) ? JNI_ABORT : 0);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Tarray_1create2 */
@@ -1564,44 +1604,40 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2
(JNIEnv *env, jclass clss, jlong type_id, jlongArray dims)
{
- int ndims = -1;
- int dlen;
- int i;
- jlong *dimsP;
- hsize_t *cdims=NULL;
- jboolean isCopy;
-
- if (dims == NULL) {
- h5nullArgument(env, "H5Tget_array_dims: value is NULL");
- } /* end if */
- else {
- dimsP = ENVPTR->GetLongArrayElements(ENVPAR dims,&isCopy);
- if (dimsP == NULL) {
- h5JNIFatalError(env, "H5Tget_array_dims: dimsP not pinned");
- } /* end if */
- else {
- dlen = ENVPTR->GetArrayLength(ENVPAR dims);
- cdims = (hsize_t*)HDmalloc((size_t)dlen * sizeof(hsize_t));
-
- ndims = H5Tget_array_dims2((hid_t)type_id, (hsize_t*)cdims);
-
- if (ndims < 0) {
- if (cdims)
- free(cdims);
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
- h5libraryError(env);
- } /* end if */
- else {
- for (i = 0; i < dlen; i++) {
- dimsP[i] = (jlong) cdims[i];
- } /* end for */
- ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, 0);
-
- if (cdims)
- HDfree(cdims);
- } /* end else */
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ hsize_t *cdims = NULL;
+ size_t i;
+ jlong *dimsP = NULL;
+ jsize dlen;
+ int ndims = -1;
+
+ UNUSED(clss);
+
+ if (NULL == dims)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tarray_get_dims2: value is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Tarray_get_dims2: dimsP not pinned");
+
+ if ((dlen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_get_dims2: dims array length < 0");
+ }
+
+ if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_get_dims2: failed to allocate dimension buffer");
+
+ if ((ndims = H5Tget_array_dims2((hid_t)type_id, (hsize_t*)cdims)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < (size_t) dlen; i++) {
+ dimsP[i] = (jlong) cdims[i];
+ } /* end for */
+
+done:
+ if (cdims)
+ HDfree(cdims);
+ if (dimsP)
+ UNPIN_LONG_ARRAY(ENVONLY, dims, dimsP, (ndims < 0) ? JNI_ABORT : 0);
return (jint)ndims;
} /* end Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2 */
@@ -1616,34 +1652,29 @@ Java_hdf_hdf5lib_H5_H5Tconvert
(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id, jlong nelmts,
jbyteArray buf, jbyteArray background, jlong plist_id)
{
- herr_t status;
- jbyte *bufP;
- jbyte *bgP = NULL;
- jboolean isCopy;
-
- if (nelmts <= 0) {
- h5badArgument(env, "H5Tconvert: name nelmts < 0");
- } /* end if */
- else {
- bufP = ENVPTR->GetByteArrayElements(ENVPAR buf, &isCopy);
- if (bufP == NULL) {
- h5JNIFatalError(env, "H5Tconvert: value not pinned");
- } /* end if */
- else {
- if (background)
- bgP = ENVPTR->GetByteArrayElements(ENVPAR background, &isCopy);
-
- status = H5Tconvert((hid_t)src_id, (hid_t)dst_id, (size_t)nelmts, (void *)bufP, (void *)bgP, (hid_t)plist_id) ;
-
- ENVPTR->ReleaseByteArrayElements(ENVPAR buf, bufP, 0);
-
- if (bgP)
- ENVPTR->ReleaseByteArrayElements(ENVPAR background, bgP, 0);
-
- if (status < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
+ jboolean isCopy;
+ jbyte *bufP = NULL;
+ jbyte *bgP = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (nelmts <= 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tconvert: nelmts < 0");
+
+ PIN_BYTE_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Tconvert: buffer not pinned");
+
+ if (background)
+ PIN_BYTE_ARRAY(ENVONLY, background, bgP, &isCopy, "H5Tconvert: background buffer not pinned");
+
+ if ((status = H5Tconvert((hid_t)src_id, (hid_t)dst_id, (size_t)nelmts, (void *)bufP, (void *)bgP, (hid_t)plist_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (bgP)
+ UNPIN_BYTE_ARRAY(ENVONLY, background, bgP, (status < 0) ? JNI_ABORT : 0);
+ if (bufP)
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, bufP, (status < 0) ? JNI_ABORT : 0);
} /* end Java_hdf_hdf5lib_H5_H5Tconvert */
/*
@@ -1654,8 +1685,13 @@ Java_hdf_hdf5lib_H5_H5Tconvert
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Tflush(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Tflush((hid_t)loc_id) < 0)
- h5libraryError(env);
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
}
/*
@@ -1666,10 +1702,14 @@ Java_hdf_hdf5lib_H5_H5Tflush(JNIEnv *env, jclass clss, jlong loc_id)
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Trefresh(JNIEnv *env, jclass clss, jlong loc_id)
{
+ UNUSED(clss);
+
if (H5Trefresh((hid_t)loc_id) < 0)
- h5libraryError(env);
-}
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
+ return;
+}
#ifdef __cplusplus
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index fd34ba1..4208ce1 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -32,7 +32,11 @@ extern "C" {
hsize_t H5TOOLS_BUFSIZE = (32 * 1024 * 1024); /* 32 MB */
int H5TOOLS_TEXT_BLOCK = 16; /* Number of elements on a line in a text export file */
+/*
+ * Pointer to the JNI's Virtual Machine; used for callback functions.
+ */
JavaVM *jvm;
+
jobject copy_callback;
jobject close_callback;
jobject create_callback;
@@ -41,22 +45,22 @@ jobject get_callback;
jobject set_callback;
jobject delete_callback;
-H5E_auto2_t efunc;
-void *edata;
+H5E_auto2_t efunc;
+void *edata;
/********************/
/* Local Prototypes */
/********************/
-static int h5str_dump_region_blocks(h5str_t *str, hid_t region, hid_t region_obj);
-static int h5str_dump_region_points(h5str_t *str, hid_t region, hid_t region_obj);
+static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
+static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
static int h5str_is_zero(const void *_mem, size_t size);
static hid_t h5str_get_native_type(hid_t type);
static hid_t h5str_get_little_endian_type(hid_t type);
static hid_t h5str_get_big_endian_type(hid_t type);
static htri_t h5str_detect_vlen(hid_t tid);
static htri_t h5str_detect_vlen_str(hid_t tid);
-static int h5tools_dump_simple_data(FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts);
+static int h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts);
static int h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts);
static int render_bin_output_region_data_blocks(FILE *stream, hid_t region_id,
hid_t container, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata);
@@ -78,9 +82,10 @@ h5str_array_free
return;
for (i = 0; i < len; i++) {
- if (*(strs + i))
- HDfree(*(strs + i));
+ if (strs[i])
+ HDfree(strs[i]);
} /* for (i=0; i<n; i++)*/
+
HDfree(strs);
} /* end h5str_array_free */
@@ -108,6 +113,9 @@ h5str_free
} /* end h5str_free */
/** reset the max size of the string */
+/*
+ * TODO: no error return. malloc can fail.
+ */
void
h5str_resize
(h5str_t *str, size_t new_len)
@@ -117,7 +125,9 @@ h5str_resize
if (!str || new_len <= 0 || str->max == new_len)
return;
- new_str = (char *)HDmalloc(new_len);
+ if (NULL == (new_str = (char *) HDmalloc(new_len)))
+ return;
+
if (new_len > str->max) /* increase memory */
HDstrcpy(new_str, str->s);
else
@@ -152,860 +162,1044 @@ h5str_append
return HDstrcat(str->s, cstr);
} /* end h5str_append */
-/** print value of a vlen data point into string.
- Return Value:
- On success, the total number of characters printed is returned.
- On error, a negative number is returned.
+/*
+ * Converts the given data point string into a real data point.
+ *
+ * Returns:
+ * SUCCESS: Length of string token processed
+ * FAILURE: 0
*/
size_t
-h5str_vlconvert
- (char *str, hid_t container, hid_t tid, hvl_t *ptr, int expand_data)
+h5str_convert
+ (JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset)
{
- unsigned char tmp_uchar = 0;
- char tmp_char = 0;
- unsigned short tmp_ushort = 0;
- short tmp_short = 0;
- unsigned int tmp_uint = 0;
- int tmp_int = 0;
- unsigned long tmp_ulong = 0;
- long tmp_long = 0;
- unsigned long long tmp_ullong = 0;
- long long tmp_llong = 0;
- float tmp_float = 0.0;
- double tmp_double = 0.0;
- long double tmp_ldouble = 0.0;
- static char fmt_llong[8], fmt_ullong[8];
-
- hid_t mtid = -1;
- size_t offset;
- size_t nll;
- char *this_str;
- size_t this_strlen;
- int n;
- H5T_class_t tclass = H5Tget_class(tid);
- size_t size = H5Tget_size(tid);
- H5T_sign_t nsign = H5Tget_sign(tid);
- int bdata_print = 0;
-
- if (!str || !ptr)
- return 0;
-
- this_str = NULL;
- this_strlen = 0;
+ unsigned char *ucptr = NULL;
+ static char fmt_llong[8], fmt_ullong[8];
+ H5T_class_t tclass = H5T_NO_CLASS;
+ const char delimiter[] = " ," H5_COMPOUND_BEGIN_INDICATOR H5_COMPOUND_END_INDICATOR \
+ H5_ARRAY_BEGIN_INDICATOR H5_ARRAY_END_INDICATOR \
+ H5_VLEN_BEGIN_INDICATOR H5_VLEN_END_INDICATOR;
+ size_t typeSize = 0;
+ hid_t mtid = H5I_INVALID_HID;
+ char *this_str = NULL;
+ char *token;
+ char *cptr = NULL;
+ int n;
+ size_t retVal = 0;
+
+ if (!in_str)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: in_str is NULL");
+ if (!out_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: out_buf is NULL");
+
+ this_str = *in_str;
+ cptr = &(((char *) out_buf)[out_buf_offset]);
+ ucptr = &(((unsigned char *) out_buf)[out_buf_offset]);
+
+ if (H5T_NO_CLASS == (tclass = H5Tget_class(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Build default formats for long long types */
+ if (!fmt_llong[0]) {
+ if (HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsprintf failure");
+ if (HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsprintf failure");
+ } /* end if */
switch (tclass) {
- case H5T_COMPOUND:
+ case H5T_FLOAT:
{
- unsigned i;
- n = H5Tget_nmembers(tid);
+ token = HDstrtok(this_str, delimiter);
+
+ switch (typeSize) {
+ case sizeof(float):
+ {
+ float tmp_float = 0.0;
- /* remove compound indicators */
- if (str[0] == ' ')
- str++;
- if (str[0] == '{')
- str++;
+ sscanf(token, "%f", &tmp_float);
+ HDmemcpy(cptr, &tmp_float, sizeof(float));
+ break;
+ }
- ptr->p = HDcalloc((size_t)1, size);
- ptr->len = size;
- for (i = 0; i < n; i++) {
- offset = H5Tget_member_offset(tid, i);
- mtid = H5Tget_member_type(tid, i);
- str += offset;
- h5str_convert(&str, container, mtid, ptr, 0, expand_data);
- /* remove compound indicators */
- if (str[0] == ',')
- str++;
- if (str[0] == ' ')
- str++;
- H5Tclose(mtid);
+ case sizeof(double):
+ {
+ double tmp_double = 0.0;
+
+ sscanf(token, "%lf", &tmp_double);
+ HDmemcpy(cptr, &tmp_double, sizeof(double));
+ break;
+ }
+#if H5_SIZEOF_LONG_DOUBLE != 0
+ case sizeof(long double):
+ {
+ long double tmp_ldouble = 0.0;
+
+ sscanf(token, "%Lf", &tmp_ldouble);
+ HDmemcpy(cptr, &tmp_ldouble, sizeof(long double));
+ break;
+ }
+#endif
+
+ default:
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: floating-point datatype size didn't match any of expected sizes");
+ break;
}
- /* remove compound indicators */
- if (str[0] == '}')
- str++;
- if (str[0] == ' ')
- str++;
+
+ retVal = typeSize;
+
+ break;
}
- break;
- case H5T_ARRAY:
+
+ case H5T_STRING:
{
- int rank = 0;
- hsize_t i, dims[H5S_MAX_RANK], total_elmts;
+ size_t len = HDstrlen(this_str);
- /* remove array indicators */
- if (str[0] == '[')
- str++;
- if (str[0] == ' ')
- str++;
+ if (len > 0) {
+ HDstrncpy(cptr, this_str, typeSize);
+ retVal = typeSize;
+ }
+ else {
+ cptr = NULL;
+ }
- mtid = H5Tget_super(tid);
- size = H5Tget_size(mtid);
- rank = H5Tget_array_ndims(tid);
+ break;
+ }
- H5Tget_array_dims2(tid, dims);
+ case H5T_INTEGER:
+ {
+ H5T_sign_t nsign = H5T_SGN_ERROR;
- total_elmts = 1;
- for (i = 0; i < rank; i++)
- total_elmts *= dims[i];
+ if (H5T_SGN_ERROR == (nsign = H5Tget_sign(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
- ptr->p = HDcalloc((size_t)total_elmts, size);
- ptr->len = total_elmts;
- h5str_convert(&str, container, mtid, ptr, 0, expand_data);
- H5Tclose(mtid);
- /* remove array indicators */
- if (str[0] == ' ')
- str++;
- if (str[0] == ']')
- str++;
- if (str[0] == ' ')
- str++;
- }
- break;
- default:
- ptr->len = size;
- ptr->p = HDcalloc(1, size);
- this_strlen = h5str_convert(&str, container, tid, ptr, 0, expand_data);
- break;
- } /* end switch */
+ token = HDstrtok(this_str, delimiter);
- return this_strlen;
-} /* end h5str_vlconvert */
+ switch (typeSize) {
+ case sizeof(char):
+ {
+ unsigned char tmp_uchar = 0;
+ signed char tmp_char = 0;
-/** print value of a data point into string.
- Return Value:
- On success, the total number of characters printed is returned.
- On error, a negative number is returned.
- */
-size_t
-h5str_convert
- (char **str, hid_t container, hid_t tid, hvl_t *ptr, int ptroffset, int expand_data)
-{
- unsigned char tmp_uchar = 0;
- char tmp_char = 0;
- unsigned short tmp_ushort = 0;
- short tmp_short = 0;
- unsigned int tmp_uint = 0;
- int tmp_int = 0;
- unsigned long tmp_ulong = 0;
- long tmp_long = 0;
- unsigned long long tmp_ullong = 0;
- long long tmp_llong = 0;
- float tmp_float = 0.0;
- double tmp_double = 0.0;
- long double tmp_ldouble = 0.0;
- static char fmt_llong[8], fmt_ullong[8];
- const char delimiter[] = " ,}]";
-
- char *token;
- hid_t mtid = -1;
- size_t offset;
- size_t nll;
- char *this_str = *str;
- size_t this_strlen;
- int n;
- char *cptr = ((char*) ((hvl_t *) ptr)->p) + ptroffset;
- unsigned char *ucptr = ((unsigned char*) ((hvl_t *) ptr)->p) + ptroffset;
- H5T_class_t tclass = H5Tget_class(tid);
- size_t size = H5Tget_size(tid);
- H5T_sign_t nsign = H5Tget_sign(tid);
- int bdata_print = 0;
-
- if (!str || !ptr)
- return 0;
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, "%hhu", &tmp_uchar);
+ HDmemcpy(cptr, &tmp_uchar, sizeof(unsigned char));
+ }
+ else {
+ sscanf(token, "%hhd", &tmp_char);
+ HDmemcpy(cptr, &tmp_char, sizeof(char));
+ }
- /* Build default formats for long long types */
- if (!fmt_llong[0]) {
- sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH);
- sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH);
- } /* end if */
+ break;
+ }
- this_strlen = HDstrlen(this_str);
+ case sizeof(short):
+ {
+ unsigned short tmp_ushort = 0;
+ short tmp_short = 0;
- switch (tclass) {
- case H5T_FLOAT:
- token = HDstrtok (this_str, delimiter);
- if (sizeof(float) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_FLOAT)) */
- tmp_float = 0;
- sscanf(token, "%f", &tmp_float);
- HDmemcpy(cptr, &tmp_float, sizeof(float));
- }
- else if (sizeof(double) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_DOUBLE)) */
- tmp_double = 0;
- sscanf(token, "%%lf", &tmp_double);
- HDmemcpy(cptr, &tmp_double, sizeof(double));
- }
-#if H5_SIZEOF_LONG_DOUBLE !=0
- else if (sizeof(long double) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_LDOUBLE)) */
- tmp_ldouble = 0;
- sscanf(token, "%Lf", &tmp_ldouble);
- HDmemcpy(cptr, &tmp_ldouble, sizeof(long double));
- }
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, "%hu", &tmp_ushort);
+ HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
+ }
+ else {
+ sscanf(token, "%hd", &tmp_short);
+ HDmemcpy(&tmp_short, cptr, sizeof(short));
+ }
+
+ break;
+ }
+
+ case sizeof(int):
+ {
+ unsigned int tmp_uint = 0;
+ int tmp_int = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, "%u", &tmp_uint);
+ HDmemcpy(cptr, &tmp_uint, sizeof(unsigned int));
+ }
+ else {
+ sscanf(token, "%d", &tmp_int);
+ HDmemcpy(cptr, &tmp_int, sizeof(int));
+ }
+
+ break;
+ }
+
+ case sizeof(long):
+ {
+ unsigned long tmp_ulong = 0;
+ long tmp_long = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, "%lu", &tmp_ulong);
+ HDmemcpy(cptr, &tmp_ulong, sizeof(unsigned long));
+ }
+ else {
+ sscanf(token, "%ld", &tmp_long);
+ HDmemcpy(cptr, &tmp_long, sizeof(long));
+ }
+
+ break;
+ }
+
+#if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG
+ case sizeof(long long):
+ {
+ unsigned long long tmp_ullong = 0;
+ long long tmp_llong = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ sscanf(token, fmt_ullong, &tmp_ullong);
+ HDmemcpy(cptr, &tmp_ullong, sizeof(unsigned long long));
+ }
+ else {
+ sscanf(token, fmt_llong, &tmp_llong);
+ HDmemcpy(cptr, &tmp_llong, sizeof(long long));
+ }
+
+ break;
+ }
#endif
- break;
- case H5T_STRING:
- {
- if (this_strlen > 0) {
- HDstrncpy(cptr, this_str, size);
- }
- else {
- cptr = NULL;
- }
- }
- break;
- case H5T_INTEGER:
- token = HDstrtok (this_str, delimiter);
- if (sizeof(char) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_UCHAR)) */
- tmp_uchar = 0;
- sscanf(token, "%hu", &tmp_uchar);
- HDmemcpy(cptr, &tmp_uchar, sizeof(unsigned char));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_SCHAR)) */
- tmp_char = 0;
- sscanf(token, "%hd", &tmp_char);
- HDmemcpy(cptr, &tmp_char, sizeof(char));
- }
- }
- else if (sizeof(int) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_UINT)) */
- tmp_uint = 0;
- sscanf(token, "%u", &tmp_uint);
- HDmemcpy(cptr, &tmp_uint, sizeof(unsigned int));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_INT)) */
- tmp_int = 0;
- sscanf(token, "%d", &tmp_int);
- HDmemcpy(cptr, &tmp_int, sizeof(int));
- }
- }
- else if (sizeof(short) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_USHORT)) */
- tmp_ushort = 0;
- sscanf(token, "%u", &tmp_ushort);
- HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_SHORT)) */
- tmp_short = 0;
- sscanf(token, "%d", &tmp_short);
- HDmemcpy(&tmp_short, cptr, sizeof(short));
- }
- }
- else if (sizeof(long) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_ULONG)) */
- tmp_ulong = 0;
- sscanf(token, "%lu", &tmp_ulong);
- HDmemcpy(cptr, &tmp_ulong, sizeof(unsigned long));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_LONG)) */
- tmp_long = 0;
- sscanf(token, "%ld", &tmp_long);
- HDmemcpy(cptr, &tmp_long, sizeof(long));
+
+ default:
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: integer datatype size didn't match any of expected sizes");
+ break;
}
+
+ retVal = typeSize;
+
+ break;
}
- else if (sizeof(long long) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_ULLONG)) */
- tmp_ullong = 0;
- sscanf(token, fmt_ullong, &tmp_ullong);
- HDmemcpy(cptr, &tmp_ullong, sizeof(unsigned long long));
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_LLONG)) */
- tmp_llong = 0;
- sscanf(token, fmt_llong, &tmp_llong);
- HDmemcpy(cptr, &tmp_llong, sizeof(long long));
+
+ case H5T_COMPOUND:
+ {
+ unsigned i;
+ size_t member_offset;
+
+ if ((n = H5Tget_nmembers(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Skip whitespace and compound indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == '{') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ for (i = 0; i < (unsigned) n; i++) {
+ member_offset = H5Tget_member_offset(tid, i);
+
+ if ((mtid = H5Tget_member_type(tid, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_convert(ENVONLY, &this_str, container, mtid, out_buf, member_offset)) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ goto done;
+ }
+
+ /* Skip whitespace and commas */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ',') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
}
+
+ /* Skip whitespace and compound indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == '}') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ retVal = typeSize * (size_t) n;
+
+ break;
}
- break;
- case H5T_COMPOUND:
- {
- unsigned i;
- n = H5Tget_nmembers(tid);
- /* remove compound indicators */
- if ((*str)[0] == ' ')
- (*str)++;
- if ((*str)[0] == '{')
- (*str)++;
-
- for (i = 0; i < n; i++) {
- offset = H5Tget_member_offset(tid, i);
- mtid = H5Tget_member_type(tid, i);
- h5str_convert(str, container, mtid, ptr, offset, expand_data);
- /* remove compound indicators */
- if ((*str)[0] == ',')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- H5Tclose(mtid);
- }
- /* remove compound indicators */
- if ((*str)[0] == '}')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- }
- break;
- case H5T_ENUM:
- {
- char enum_name[1024];
- void *value;
- if (sizeof(char) == size) {
- tmp_uchar = 0;
- value = &tmp_uchar;
- }
- else if (sizeof(short) == size) {
- tmp_ushort = 0;
- value = &tmp_ushort;
- }
- else if (sizeof(long) == size) {
- tmp_ulong = 0;
- value = &tmp_ulong;
- }
- else if (sizeof(long long) == size) {
- tmp_ullong = 0;
- value = &tmp_ullong;
- }
- else {
- tmp_uint = 0;
- value = &tmp_uint;
- }
- token = HDstrtok (this_str, delimiter);
- H5Tenum_valueof(tid, token, value);
- HDmemcpy(ucptr, value, size);
- }
- break;
- case H5T_REFERENCE:
+
/* TODO handle reference writing */
- cptr = NULL;
- break;
- case H5T_ARRAY:
- {
- int rank = 0;
- hsize_t i, dims[H5S_MAX_RANK], total_elmts;
- /* remove array indicators */
- if ((*str)[0] == '[')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
-
- mtid = H5Tget_super(tid);
- offset = H5Tget_size(mtid);
- rank = H5Tget_array_ndims(tid);
-
- H5Tget_array_dims2(tid, dims);
-
- total_elmts = 1;
- for (i = 0; i < rank; i++)
- total_elmts *= dims[i];
-
- cptr = HDcalloc((size_t)total_elmts, offset);
- for (i = 0; i < total_elmts; i++) {
- h5str_convert(str, container, mtid, cptr + (i*offset), offset, expand_data);
- /* remove array indicators */
- if ((*str)[0] == ',')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- }
- H5Tclose(mtid);
- /* remove array indicators */
- if ((*str)[0] == ' ')
- (*str)++;
- if ((*str)[0] == ']')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- }
- break;
- case H5T_VLEN:
+ case H5T_REFERENCE:
+ cptr = NULL;
+ break;
+
+ case H5T_ENUM:
{
- unsigned int i;
- mtid = H5Tget_super(tid);
- offset = H5Tget_size(mtid);
-
- /* remove vlen indicators */
- if ((*str)[0] == '{')
- (*str)++;
- cptr = HDcalloc(offset, sizeof(hvl_t));
- for (i = 0; (i*offset) < (int)size; i++) {
- h5str_convert(str, container, mtid, cptr + (i*offset), offset, expand_data);
- /* remove vlen indicators */
- if ((*str)[0] == ',')
- (*str)++;
- if ((*str)[0] == ' ')
- (*str)++;
- if ((*str)[0] == '}')
+ void *value;
+
+ token = HDstrtok(this_str, delimiter);
+
+ switch (typeSize) {
+ case sizeof(char):
+ {
+ unsigned char tmp_uchar = 0;
+ value = &tmp_uchar;
+ break;
+ }
+
+ case sizeof(short):
+ {
+ unsigned short tmp_ushort = 0;
+ value = &tmp_ushort;
+ break;
+ }
+
+ case sizeof(long):
+ {
+ unsigned long tmp_ulong = 0;
+ value = &tmp_ulong;
break;
+ }
+
+#if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG
+ case sizeof(long long):
+ {
+ unsigned long long tmp_ullong = 0;
+ value = &tmp_ullong;
+ break;
+ }
+#endif
+
+ default:
+ {
+ unsigned int tmp_uint = 0;
+ value = &tmp_uint;
+ break;
+ }
}
- H5Tclose(mtid);
- /* remove vlen indicators */
- if ((*str)[0] == '}')
- (*str)++;
+
+ if (H5Tenum_valueof(tid, token, value) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ HDmemcpy(ucptr, value, typeSize);
+
+ retVal = typeSize;
+
+ break;
}
- break;
- default:
- {
- /* All other types get copied raw */
- HDmemcpy(ucptr, this_str, size);
- }
- break;
- } /* end switch */
+ case H5T_ARRAY:
+ {
+ hsize_t i, dims[H5S_MAX_RANK], total_elmts;
+ size_t baseTypeSize;
+ int rank = 0;
- return this_strlen;
-} /* end h5str_convert */
+ /* Skip whitespace and array indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == '[') this_str++;
+ while (*this_str == ' ') this_str++;
-/** print value of a vlen data point into string.
- Return Value:
- On success, the total number of characters printed is returned.
- On error, a negative number is returned.
- */
-size_t
-h5str_vlsprintf
- (h5str_t *str, hid_t container, hid_t tid, hvl_t *ptr, int expand_data)
-{
- unsigned char tmp_uchar = 0;
- char tmp_char = 0;
- unsigned short tmp_ushort = 0;
- short tmp_short = 0;
- unsigned int tmp_uint = 0;
- int tmp_int = 0;
- unsigned long tmp_ulong = 0;
- long tmp_long = 0;
- unsigned long long tmp_ullong = 0;
- long long tmp_llong = 0;
- float tmp_float = 0.0;
- double tmp_double = 0.0;
- long double tmp_ldouble = 0.0;
- static char fmt_llong[8], fmt_ullong[8];
-
- hid_t mtid = -1;
- size_t offset;
- size_t nll;
- char *this_str;
- size_t this_strlen;
- int n;
- H5T_class_t tclass = H5Tget_class(tid);
- size_t size = H5Tget_size(tid);
- H5T_sign_t nsign = H5Tget_sign(tid);
- int bdata_print = 0;
-
- if (!str || !ptr)
- return 0;
+ if ((mtid = H5Tget_super(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- /* Build default formats for long long types */
- if (!fmt_llong[0]) {
- sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH);
- sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH);
- } /* end if */
+ if (!(baseTypeSize = H5Tget_size(mtid)))
+ H5_LIBRARY_ERROR(ENVONLY);
- this_str = NULL;
- this_strlen = 0;
+ if ((rank = H5Tget_array_ndims(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- switch (tclass) {
- case H5T_COMPOUND:
- {
- unsigned i;
- n = H5Tget_nmembers(tid);
- h5str_append(str, " {");
+ if (H5Tget_array_dims2(tid, dims) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- for (i = 0; i < n; i++) {
- offset = H5Tget_member_offset(tid, i);
- mtid = H5Tget_member_type(tid, i);
- h5str_sprintf(str, container, mtid, ((char *) (ptr->p)) + offset, ptr->len, expand_data);
- if ((i + 1) < n)
- h5str_append(str, ", ");
- H5Tclose(mtid);
+ for (i = 0, total_elmts = 1; i < (hsize_t) rank; i++)
+ total_elmts *= dims[i];
+
+ if (NULL == (cptr = (char *) HDcalloc((size_t)total_elmts, baseTypeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to allocate array buffer");
+
+ for (i = 0; i < total_elmts; i++) {
+ if (!(h5str_convert(ENVONLY, &this_str, container, mtid, out_buf, i * baseTypeSize))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ goto done;
+ }
+
+ /* Skip whitespace and commas */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ',') this_str++;
+ while (*this_str == ' ') this_str++;
}
- h5str_append(str, "} ");
+
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
+
+ /* Skip whitespace and array indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ']') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ retVal = typeSize * total_elmts;
+
+ break;
}
- break;
- case H5T_ARRAY:
+
+ case H5T_VLEN:
{
- int rank = 0;
- hsize_t i, dims[H5S_MAX_RANK], total_elmts;
- h5str_append(str, "[ ");
+ size_t i, baseTypeSize;
+ hvl_t *vl_buf = (hvl_t *) out_buf;
+ char cur_char;
+
+ if ((mtid = H5Tget_super(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(baseTypeSize = H5Tget_size(mtid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (vl_buf->p = HDmalloc(baseTypeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to allocate vlen buffer");
+ vl_buf->len = 1;
+
+ /* Skip whitespace and vlen indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == '(') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ cur_char = *this_str;
+ for (i = 0; cur_char != ')' && cur_char != '\0'; i++) {
+ if (i >= vl_buf->len) {
+ char *tmp_realloc;
+
+ if (NULL == (tmp_realloc = (char *) HDrealloc(vl_buf->p, vl_buf->len * 2 * baseTypeSize)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to reallocate vlen buffer");
+ vl_buf->len *= 2;
+ vl_buf->p = tmp_realloc;
+ }
- mtid = H5Tget_super(tid);
- size = H5Tget_size(mtid);
- rank = H5Tget_array_ndims(tid);
+ if (!(h5str_convert(ENVONLY, &this_str, container, mtid, vl_buf->p, i * baseTypeSize))) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ vl_buf->len = i;
+ goto done;
+ }
- H5Tget_array_dims2(tid, dims);
+ /* Skip whitespace and commas */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ',') this_str++;
+ while (*this_str == ' ') this_str++;
+ }
- total_elmts = 1;
- for (i = 0; i < rank; i++)
- total_elmts *= dims[i];
+ vl_buf->len = i;
- h5str_sprintf(str, container, mtid, ((char *) (ptr->p)), ptr->len, expand_data);
- H5Tclose(mtid);
- h5str_append(str, " ] ");
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
+
+ /* Skip whitespace and vlen indicators */
+ while (*this_str == ' ') this_str++;
+ if (*this_str == ')') this_str++;
+ while (*this_str == ' ') this_str++;
+
+ retVal = typeSize;
+
+ break;
+ }
+
+ case H5T_NCLASSES:
+ case H5T_NO_CLASS:
+ {
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: invalid datatype class");
+ break;
+ }
+
+ case H5T_TIME:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ default:
+ {
+ /* All other types get copied raw */
+ HDmemcpy(ucptr, this_str, typeSize);
+
+ retVal = typeSize;
+
+ break;
}
- break;
- default:
- this_strlen = h5str_sprintf(str, container, tid, ((char *) (ptr->p)), ptr->len, expand_data);
- break;
} /* end switch */
- return this_strlen;
-} /* end h5str_vlsprintf */
+done:
+ if (mtid >= 0)
+ H5Tclose(mtid);
-/** print value of a data point into string.
- Return Value:
- On success, the total number of characters printed is returned.
- On error, a negative number is returned.
+ return retVal;
+} /* end h5str_convert */
+
+/*
+ * Prints the value of a data point into a string.
+ *
+ * Returns:
+ * SUCCESS: Total number of characters printed
+ * FAILURE: 0
*/
size_t
h5str_sprintf
- (h5str_t *str, hid_t container, hid_t tid, void *ptr, int ptr_len, int expand_data)
+ (JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, int expand_data)
{
- unsigned char tmp_uchar = 0;
- char tmp_char = 0;
- unsigned short tmp_ushort = 0;
- short tmp_short = 0;
- unsigned int tmp_uint = 0;
- int tmp_int = 0;
- unsigned long tmp_ulong = 0;
- long tmp_long = 0;
- unsigned long long tmp_ullong = 0;
- long long tmp_llong = 0;
- float tmp_float = 0.0;
- double tmp_double = 0.0;
- long double tmp_ldouble = 0.0;
- static char fmt_llong[8], fmt_ullong[8];
-
- hid_t mtid = -1;
- size_t offset;
- size_t nll;
- char *this_str;
- size_t this_strlen;
- int n;
- char *cptr = (char*) (ptr);
- unsigned char *ucptr = (unsigned char*) (ptr);
- H5T_class_t tclass = H5Tget_class(tid);
- size_t size = H5Tget_size(tid);
- H5T_sign_t nsign = H5Tget_sign(tid);
- int bdata_print = 0;
-
- if (!str || !ptr)
- return 0;
+ unsigned char *ucptr = (unsigned char *) in_buf;
+ static char fmt_llong[8], fmt_ullong[8];
+ H5T_class_t tclass = H5T_NO_CLASS;
+ size_t typeSize = 0;
+ hid_t mtid = H5I_INVALID_HID;
+ char *cptr = (char *) in_buf;
+ char *this_str = NULL;
+ int n;
+ size_t retVal = 0;
+
+ if (!out_str)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: out_str is NULL");
+ if (!in_buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: in_buf is NULL");
+
+ if (H5T_NO_CLASS == (tclass = H5Tget_class(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(typeSize = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
/* Build default formats for long long types */
if (!fmt_llong[0]) {
- sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH);
- sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH);
+ if (HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
+ if (HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure");
} /* end if */
- this_str = NULL;
- this_strlen = 0;
-
switch (tclass) {
- case H5T_FLOAT:
- if (sizeof(float) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_FLOAT)) */
- HDmemcpy(&tmp_float, cptr, sizeof(float));
- this_str = (char*)HDmalloc(25);
- sprintf(this_str, "%g", tmp_float);
- }
- else if (sizeof(double) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_DOUBLE)) */
- HDmemcpy(&tmp_double, cptr, sizeof(double));
- this_str = (char*)HDmalloc(25);
- sprintf(this_str, "%g", tmp_double);
- }
-#if H5_SIZEOF_LONG_DOUBLE !=0
- else if (sizeof(long double) == size) {
- /* if (H5Tequal(tid, H5T_NATIVE_LDOUBLE)) */
- HDmemcpy(&tmp_ldouble, cptr, sizeof(long double));
- this_str = (char*)HDmalloc(27);
- sprintf(this_str, "%Lf", tmp_ldouble);
- }
-#endif
- break;
- case H5T_STRING:
- {
- char *tmp_str;
- size = 0;
+ case H5T_FLOAT:
+ {
+ switch (typeSize) {
+ case sizeof(float):
+ {
+ float tmp_float = 0.0;
- if (H5Tis_variable_str(tid)) {
- tmp_str = *(char**) ptr;
- if (tmp_str != NULL)
- size = HDstrlen(tmp_str);
- }
- else {
- tmp_str = cptr;
- }
+ HDmemcpy(&tmp_float, cptr, sizeof(float));
- /* Check for NULL pointer for string */
- if (tmp_str == NULL) {
- this_str = (char *)HDmalloc(5);
- HDstrncpy(this_str, "NULL", 4);
- }
- else {
- if (size > 0) {
- this_str = (char *)HDmalloc(size+1);
- HDstrncpy(this_str, tmp_str, size);
+ if (NULL == (this_str = (char *) HDmalloc(25)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%g", tmp_float) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+
+ break;
+ }
+
+ case sizeof(double):
+ {
+ double tmp_double = 0.0;
+
+ HDmemcpy(&tmp_double, cptr, sizeof(double));
+
+ if (NULL == (this_str = (char *) HDmalloc(25)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%g", tmp_double) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+
+ break;
+ }
+#if H5_SIZEOF_LONG_DOUBLE != 0
+ case sizeof(long double):
+ {
+ long double tmp_ldouble = 0.0;
+
+ HDmemcpy(&tmp_ldouble, cptr, sizeof(long double));
+
+ if (NULL == (this_str = (char *) HDmalloc(27)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%Lf", tmp_ldouble) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+
+ break;
+ }
+#endif
+
+ default:
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: floating-point datatype size didn't match any of expected sizes");
+ break;
}
+
+ break;
}
- }
- break;
- case H5T_INTEGER:
- if (sizeof(char) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_UCHAR)) */
- HDmemcpy(&tmp_uchar, cptr, sizeof(unsigned char));
- this_str = (char*)HDmalloc(7);
- sprintf(this_str, "%u", tmp_uchar);
+
+ case H5T_STRING:
+ {
+ htri_t is_variable;
+ char *tmp_str;
+
+ typeSize = 0;
+
+ if ((is_variable = H5Tis_variable_str(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (is_variable) {
+ if (NULL != (tmp_str = *(char **) in_buf))
+ typeSize = HDstrlen(tmp_str);
}
else {
- /* if (H5Tequal(tid, H5T_NATIVE_SCHAR)) */
- HDmemcpy(&tmp_char, cptr, sizeof(char));
- this_str = (char*)HDmalloc(7);
- sprintf(this_str, "%hhd", tmp_char);
+ tmp_str = cptr;
}
- }
- else if (sizeof(int) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_UINT)) */
- HDmemcpy(&tmp_uint, cptr, sizeof(unsigned int));
- this_str = (char*)HDmalloc(14);
- sprintf(this_str, "%u", tmp_uint);
+
+ /* Check for NULL pointer for string */
+ if (!tmp_str) {
+ if (NULL == (this_str = (char *) HDmalloc(5)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ HDstrncpy(this_str, "NULL", 5);
}
else {
- /* if (H5Tequal(tid, H5T_NATIVE_INT)) */
- HDmemcpy(&tmp_int, cptr, sizeof(int));
- this_str = (char*)HDmalloc(14);
- sprintf(this_str, "%d", tmp_int);
+ if (typeSize > 0) {
+ if (NULL == (this_str = (char *) HDmalloc(typeSize + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ HDstrncpy(this_str, tmp_str, typeSize);
+ }
}
+
+ break;
}
- else if (sizeof(short) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_USHORT)) */
- HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
- this_str = (char*)HDmalloc(9);
- sprintf(this_str, "%u", tmp_ushort);
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_SHORT)) */
- HDmemcpy(&tmp_short, cptr, sizeof(short));
- this_str = (char*)HDmalloc(9);
- sprintf(this_str, "%d", tmp_short);
+
+ case H5T_INTEGER:
+ {
+ H5T_sign_t nsign = H5T_SGN_ERROR;
+
+ if (H5T_SGN_ERROR == (nsign = H5Tget_sign(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ switch (typeSize) {
+ case sizeof(char):
+ {
+ unsigned char tmp_uchar = 0;
+ char tmp_char = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_uchar, cptr, sizeof(unsigned char));
+
+ if (NULL == (this_str = (char *) HDmalloc(7)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%u", tmp_uchar) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_char, cptr, sizeof(char));
+
+ if (NULL == (this_str = (char *) HDmalloc(7)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%hhd", tmp_char) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+
+ case sizeof(short):
+ {
+ unsigned short tmp_ushort = 0;
+ short tmp_short = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short));
+
+ if (NULL == (this_str = (char *) HDmalloc(9)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%u", tmp_ushort) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_short, cptr, sizeof(short));
+
+ if (NULL == (this_str = (char *) HDmalloc(9)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%d", tmp_short) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+
+ case sizeof(int):
+ {
+ unsigned int tmp_uint = 0;
+ int tmp_int = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_uint, cptr, sizeof(unsigned int));
+
+ if (NULL == (this_str = (char *) HDmalloc(14)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%u", tmp_uint) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_int, cptr, sizeof(int));
+
+ if (NULL == (this_str = (char *) HDmalloc(14)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%d", tmp_int) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+
+ case sizeof(long):
+ {
+ unsigned long tmp_ulong = 0;
+ long tmp_long = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_ulong, cptr, sizeof(unsigned long));
+
+ if (NULL == (this_str = (char *) HDmalloc(23)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%lu", tmp_ulong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_long, cptr, sizeof(long));
+
+ if (NULL == (this_str = (char *) HDmalloc(23)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, "%ld", tmp_long) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+
+#if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG
+ case sizeof(long long):
+ {
+ unsigned long long tmp_ullong = 0;
+ long long tmp_llong = 0;
+
+ if (H5T_SGN_NONE == nsign) {
+ HDmemcpy(&tmp_ullong, cptr, sizeof(unsigned long long));
+
+ if (NULL == (this_str = (char *) HDmalloc(25)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, fmt_ullong, tmp_ullong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ HDmemcpy(&tmp_llong, cptr, sizeof(long long));
+
+ if (NULL == (this_str = (char *) HDmalloc(25)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (HDsprintf(this_str, fmt_llong, tmp_llong) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
+ }
+#endif
+
+ default:
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: integer datatype size didn't match any of expected sizes");
+ break;
}
+
+ break;
}
- else if (sizeof(long) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_ULONG)) */
- HDmemcpy(&tmp_ulong, cptr, sizeof(unsigned long));
- this_str = (char*)HDmalloc(23);
- sprintf(this_str, "%lu", tmp_ulong);
- }
- else {
- /* if (H5Tequal(tid, H5T_NATIVE_LONG)) */
- HDmemcpy(&tmp_long, cptr, sizeof(long));
- this_str = (char*)HDmalloc(23);
- sprintf(this_str, "%ld", tmp_long);
+
+ case H5T_COMPOUND:
+ {
+ unsigned i;
+ size_t offset;
+
+ if ((n = H5Tget_nmembers(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_append(out_str, H5_COMPOUND_BEGIN_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ for (i = 0; i < (unsigned) n; i++) {
+ offset = H5Tget_member_offset(tid, i);
+
+ if ((mtid = H5Tget_member_type(tid, i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], in_buf_len, expand_data))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((i + 1) < (unsigned) n)
+ if (!h5str_append(out_str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
}
+
+ if (!h5str_append(out_str, H5_COMPOUND_END_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
}
- else if (sizeof(long long) == size) {
- if(H5T_SGN_NONE == nsign) {
- /* if (H5Tequal(tid, H5T_NATIVE_ULLONG)) */
- HDmemcpy(&tmp_ullong, cptr, sizeof(unsigned long long));
- this_str = (char*)HDmalloc(25);
- sprintf(this_str, fmt_ullong, tmp_ullong);
+
+ case H5T_ENUM:
+ {
+ char enum_name[1024];
+
+ if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) {
+ if (!h5str_append(out_str, enum_name))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
else {
- /* if (H5Tequal(tid, H5T_NATIVE_LLONG)) */
- HDmemcpy(&tmp_llong, cptr, sizeof(long long));
- this_str = (char*)HDmalloc(25);
- sprintf(this_str, fmt_llong, tmp_llong);
+ size_t i;
+
+ if (NULL == (this_str = (char *) HDmalloc(4 * (typeSize + 1))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (1 == typeSize) {
+ if (HDsprintf(this_str, "%#02x", ucptr[0]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ for (i = 0; i < typeSize; i++)
+ if (HDsprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
}
+
+ break;
}
- break;
- case H5T_COMPOUND:
- {
- unsigned i;
- n = H5Tget_nmembers(tid);
- h5str_append(str, " {");
-
- for (i = 0; i < n; i++) {
- offset = H5Tget_member_offset(tid, i);
- mtid = H5Tget_member_type(tid, i);
- h5str_sprintf(str, container, mtid, cptr + offset, ptr_len, expand_data);
- if ((i + 1) < n)
- h5str_append(str, ", ");
- H5Tclose(mtid);
- }
- h5str_append(str, "} ");
- }
- break;
- case H5T_ENUM:
- {
- char enum_name[1024];
- if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) {
- h5str_append(str, enum_name);
- }
- else {
- size_t i;
- nll = H5Tget_size(tid);
- this_str = (char*)HDmalloc(4 * (nll + 1));
- if (1 == nll) {
- sprintf(this_str, "%#02x", ucptr[0]);
- }
- else {
- for (i = 0; i < (int)nll; i++)
- sprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]);
+ case H5T_REFERENCE:
+ {
+ if (h5str_is_zero(cptr, 99)) {
+ if (!h5str_append(out_str, "NULL"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ break;
}
- }
- }
- break;
- case H5T_REFERENCE:
- if (h5str_is_zero(cptr, size)) {
- h5str_append(str, "NULL");
- }
- else {
- if (H5R_DSET_REG_REF_BUF_SIZE == size) {
- /* if (H5Tequal(tid, H5T_STD_REF_DSETREG)) */
+
+ if (H5R_DSET_REG_REF_BUF_SIZE == typeSize) {
+ H5S_sel_type region_type = H5S_SEL_ERROR;
+ hid_t region_obj = H5I_INVALID_HID;
+ hid_t region = H5I_INVALID_HID;
+ char ref_name[1024];
+
/*
* Dataset region reference --
* show the type and the referenced object
*/
- char ref_name[1024];
- hid_t region_obj;
- hid_t region;
- H5S_sel_type region_type;
- /* get name of the dataset the region reference points to using H5Rget_name */
- region_obj = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, cptr);
- if (region_obj >= 0) {
- region = H5Rget_region(container, H5R_DATASET_REGION, cptr);
- if (region >= 0) {
- if(expand_data) {
- region_type = H5Sget_select_type(region);
- if(region_type==H5S_SEL_POINTS) {
- h5str_dump_region_points_data(str, region, region_obj);
- }
- else {
- h5str_dump_region_blocks_data(str, region, region_obj);
- }
- }
- else {
- if(H5Rget_name(region_obj, H5R_DATASET_REGION, cptr, (char*)ref_name, 1024) >= 0) {
- h5str_append(str, ref_name);
- }
-
- region_type = H5Sget_select_type(region);
-
- if(region_type==H5S_SEL_POINTS) {
- h5str_append(str, " REGION_TYPE POINT");
- h5str_dump_region_points(str, region, region_obj);
- }
- else {
- h5str_append(str, " REGION_TYPE BLOCK");
- h5str_dump_region_blocks(str, region, region_obj);
- }
- }
+ /* Get name of the dataset the region reference points to using H5Rget_name */
+ if ((region_obj = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, cptr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- H5Sclose(region);
+ if ((region = H5Rget_region(container, H5R_DATASET_REGION, cptr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (expand_data) {
+ if (H5S_SEL_ERROR == (region_type = H5Sget_select_type(region)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5S_SEL_POINTS == region_type) {
+ if (h5str_dump_region_points_data(ENVONLY, out_str, region, region_obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else {
+ if (h5str_dump_region_blocks_data(ENVONLY, out_str, region, region_obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
- H5Dclose(region_obj);
}
+ else {
+ if (H5Rget_name(region_obj, H5R_DATASET_REGION, cptr, (char *)ref_name, 1024) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_append(out_str, ref_name))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (H5S_SEL_ERROR == (region_type = H5Sget_select_type(region)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5S_SEL_POINTS == region_type) {
+ if (!h5str_append(out_str, " REGION_TYPE POINT"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (h5str_dump_region_points(ENVONLY, out_str, region, region_obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else {
+ if (!h5str_append(out_str, " REGION_TYPE BLOCK"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (h5str_dump_region_blocks(ENVONLY, out_str, region, region_obj) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ }
+
+ if (H5Sclose(region) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ region = H5I_INVALID_HID;
+
+ if (H5Dclose(region_obj) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ region_obj = H5I_INVALID_HID;
}
- else if (H5R_OBJ_REF_BUF_SIZE == size) {
- /* if (H5Tequal(tid, H5T_STD_REF_OBJ)) */
+ else if (H5R_OBJ_REF_BUF_SIZE == typeSize) {
+ H5O_info_t oi;
+ hid_t obj = H5I_INVALID_HID;
+
/*
* Object references -- show the type and OID of the referenced
* object.
*/
- H5O_info_t oi;
- hid_t obj;
- this_str = (char*)HDmalloc(64);
- obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, cptr);
- H5Oget_info2(obj, &oi, H5O_INFO_ALL);
+ if (NULL == (this_str = (char *) HDmalloc(64)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if ((obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, cptr)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Oget_info2(obj, &oi, H5O_INFO_ALL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
/* Print object data and close object */
- sprintf(this_str, "%u-%lu", (unsigned) oi.type, oi.addr);
- H5Oclose(obj);
+ if (HDsprintf(this_str, "%u-%lu", (unsigned) oi.type, oi.addr) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+
+ if (H5Oclose(obj) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ obj = H5I_INVALID_HID;
}
+
+ break;
}
- break;
- case H5T_ARRAY:
- {
- int rank = 0;
- hsize_t i, dims[H5S_MAX_RANK], total_elmts;
- h5str_append(str, "[ ");
- mtid = H5Tget_super(tid);
- size = H5Tget_size(mtid);
- rank = H5Tget_array_ndims(tid);
+ case H5T_ARRAY:
+ {
+ hsize_t dims[H5S_MAX_RANK], i, total_elmts;
+ size_t baseSize;
+ int rank = 0;
+
+ if (!h5str_append(out_str, H5_ARRAY_BEGIN_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((mtid = H5Tget_super(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(baseSize = H5Tget_size(mtid)))
+ H5_LIBRARY_ERROR(ENVONLY);
- H5Tget_array_dims2(tid, dims);
+ if ((rank = H5Tget_array_ndims(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- total_elmts = 1;
- for (i = 0; i < rank; i++)
- total_elmts *= dims[i];
+ if (H5Tget_array_dims2(tid, dims) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- for (i = 0; i < total_elmts; i++) {
- h5str_sprintf(str, container, mtid, cptr + i * size, ptr_len, expand_data);
- if ((i + 1) < total_elmts)
- h5str_append(str, ", ");
+ for (i = 0, total_elmts = 1; i < (hsize_t) rank; i++)
+ total_elmts *= dims[i];
+
+ for (i = 0; i < total_elmts; i++) {
+ if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), in_buf_len, expand_data))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((i + 1) < total_elmts)
+ if (!h5str_append(out_str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+ if (!h5str_append(out_str, H5_ARRAY_END_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
+
+ break;
}
- H5Tclose(mtid);
- h5str_append(str, " ] ");
- }
- break;
- case H5T_VLEN:
+
+ case H5T_VLEN:
{
- unsigned int i;
- mtid = H5Tget_super(tid);
- size = H5Tget_size(mtid);
-
- h5str_append(str, "{");
- for (i = 0; i < (int)ptr_len; i++) {
- h5str_sprintf(str, container, mtid, cptr + i * size, ptr_len, expand_data);
- if ((i + 1) < (int)ptr_len)
- h5str_append(str, ", ");
+ unsigned int i;
+ size_t baseSize;
+ hvl_t *vl_buf = (hvl_t *) in_buf;
+
+ if ((mtid = H5Tget_super(tid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(baseSize = H5Tget_size(mtid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_append(out_str, H5_VLEN_BEGIN_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ for (i = 0; i < (unsigned) vl_buf->len; i++) {
+ if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(((char *) vl_buf->p)[i * baseSize]), vl_buf->len, expand_data))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if ((i + 1) < (unsigned) vl_buf->len)
+ if (!h5str_append(out_str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
- H5Tclose(mtid);
- h5str_append(str, "}");
- }
- break;
- default:
- {
- /* All other types get printed as hexadecimal */
- size_t i;
- nll = H5Tget_size(tid);
- this_str = (char*)HDmalloc(4 * (nll + 1));
+ if (!h5str_append(out_str, H5_VLEN_END_INDICATOR))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (1 == nll) {
- sprintf(this_str, "%#02x", ucptr[0]);
+ if (H5Tclose(mtid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ mtid = H5I_INVALID_HID;
+
+ break;
}
- else {
- for (i = 0; i < (int)nll; i++)
- sprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]);
+
+ case H5T_NO_CLASS:
+ case H5T_NCLASSES:
+ {
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: invalid datatype class");
+ break;
+ }
+
+ case H5T_TIME:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ default:
+ {
+ size_t i;
+
+ /* All other types get printed as hexadecimal */
+
+ if (NULL == (this_str = (char *) HDmalloc(4 * (typeSize + 1))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer");
+
+ if (1 == typeSize) {
+ if (HDsprintf(this_str, "%#02x", ucptr[0]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+ else {
+ for (i = 0; i < typeSize; i++)
+ if (HDsprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
+ }
+
+ break;
}
}
- break;
- } /* end switch */
if (this_str) {
- h5str_append(str, this_str);
- this_strlen = HDstrlen(str->s);
+ if (!h5str_append(out_str, this_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
HDfree(this_str);
+ this_str = NULL;
} /* end if */
- return this_strlen;
+ retVal = HDstrlen(out_str->s);
+
+done:
+ if (mtid >= 0)
+ H5Tclose(mtid);
+
+ return retVal;
} /* end h5str_sprintf */
/*-------------------------------------------------------------------------
@@ -1020,113 +1214,115 @@ h5str_sprintf
*/
static int
h5str_print_region_data_blocks
- (hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata)
+ (JNIEnv *env, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata)
{
- hsize_t *dims1 = NULL;
- hsize_t *start = NULL;
- hsize_t *count = NULL;
- hsize_t blkndx;
- hsize_t total_size[H5S_MAX_RANK];
- hsize_t numelem;
- hsize_t numindex;
- size_t jndx;
- unsigned indx;
- size_t type_size;
- int ret_value = SUCCEED;
- hid_t mem_space = -1;
- hid_t sid1 = -1;
- void *region_buf = NULL;
+ unsigned indx;
+ hsize_t *dims1 = NULL;
+ hsize_t *start = NULL;
+ hsize_t *count = NULL;
+ hsize_t blkndx;
+ hsize_t total_size[H5S_MAX_RANK];
+ hsize_t numelem;
+ hsize_t numindex;
+ size_t jndx;
+ size_t type_size;
+ hid_t mem_space = H5I_INVALID_HID;
+ hid_t sid1 = H5I_INVALID_HID;
+ void *region_buf = NULL;
+ int ret_value = FAIL;
+
+ if (ndims < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_blocks: ndims < 0");
+ if (nblocks < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_blocks: nblocks < 0");
/* Get the dataspace of the dataset */
- if((sid1 = H5Dget_space(region_id)) >= 0) {
+ if ((sid1 = H5Dget_space(region_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- /* Allocate space for the dimension array */
- if((dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
-
- /* find the dimensions of each data space from the block coordinates */
- numelem = 1;
- for (jndx = 0; jndx < ndims; jndx++) {
- dims1[jndx] = ptdata[jndx + (size_t)ndims] - ptdata[jndx] + 1;
- numelem = dims1[jndx] * numelem;
- } /* end for */
-
- /* Create dataspace for reading buffer */
- if((mem_space = H5Screate_simple(ndims, dims1, NULL)) >= 0) {
- if((type_size = H5Tget_size(type_id)) > 0) {
- if((region_buf = HDmalloc(type_size * (size_t)numelem)) != NULL) {
- /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
- /* 1 2 n 1 2 n */
- if((start = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- if((count = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- for (blkndx = 0; blkndx < nblocks; blkndx++) {
- for (indx = 0; indx < ndims; indx++) {
- start[indx] = ptdata[indx + blkndx * (hsize_t)ndims * 2];
- count[indx] = dims1[indx];
- } /* end for */
-
- if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) {
- if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) {
- if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) {
- for (numindex = 0; numindex < numelem; numindex++) {
- h5str_sprintf(str, region_id, type_id, ((char*)region_buf + numindex * type_size), 0, 1);
-
- if (numindex + 1 < numelem)
- h5str_append(str, ", ");
- } /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */
- } /* end if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) */
- } /* end if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) */
- } /* end if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) */
- } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
-
- HDfree(count);
- } /* end if((count = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
-
- HDfree(start);
- } /* end if((start = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
+ /* Allocate space for the dimension array */
+ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate dimension array buffer");
- HDfree(region_buf);
- } /* end if((region_buf = HDmalloc(type_size * (size_t)numelem)) != NULL) */
- else
- ret_value = -1;
- } /* end if((type_size = H5Tget_size(type_id)) > 0) */
- else
- ret_value = -1;
-
- if(H5Sclose(mem_space) < 0)
- ret_value = -1;
- } /* end if((mem_space = H5Screate_simple(ndims, dims1, NULL)) >= 0) */
- else
- ret_value = -1;
-
- HDfree(dims1);
- } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
-
- if(H5Sclose(sid1) < 0)
- ret_value = -1;
- } /* end if((sid1 = H5Dget_space(region_id)) >= 0) */
- else
- ret_value = -1;
+ /* Find the dimensions of each data space from the block coordinates */
+ for (jndx = 0, numelem = 1; jndx < (size_t) ndims; jndx++) {
+ dims1[jndx] = ptdata[jndx + (size_t)ndims] - ptdata[jndx] + 1;
+ numelem = dims1[jndx] * numelem;
+ } /* end for */
+
+ /* Create dataspace for reading buffer */
+ if ((mem_space = H5Screate_simple(ndims, dims1, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!(type_size = H5Tget_size(type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (region_buf = HDmalloc(type_size * (size_t)numelem)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate region buffer");
+
+ /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
+ /* 1 2 n 1 2 n */
+ if (NULL == (start = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab start buffer");
+
+ if (NULL == (count = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab count buffer");
+
+ for (blkndx = 0; blkndx < (hsize_t) nblocks; blkndx++) {
+ for (indx = 0; indx < (unsigned) ndims; indx++) {
+ start[indx] = ptdata[indx + blkndx * (hsize_t)ndims * 2];
+ count[indx] = dims1[indx];
+ } /* end for */
+
+ if (H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (numindex = 0; numindex < numelem; numindex++) {
+ if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + numindex * type_size), 0, 1))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (numindex + 1 < numelem)
+ if (!h5str_append(str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ } /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */
+ } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
+
+ ret_value = SUCCEED;
+
+done:
+ if (count)
+ HDfree(count);
+ if (start)
+ HDfree(start);
+ if (region_buf)
+ HDfree(region_buf);
+ if (mem_space >= 0)
+ H5Sclose(mem_space);
+ if (dims1)
+ HDfree(dims1);
+ if (sid1 >= 0)
+ H5Sclose(sid1);
return ret_value;
} /* end h5str_print_region_data_blocks */
int
h5str_dump_region_blocks_data
- (h5str_t *str, hid_t region, hid_t region_id)
+ (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
- int ret_value = 0;
- hssize_t nblocks;
- hsize_t alloc_size;
- hsize_t *ptdata;
- hid_t dtype = -1;
- hid_t type_id = -1;
- int ndims = H5Sget_simple_extent_ndims(region);
+ hssize_t nblocks;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ hid_t dtype = H5I_INVALID_HID;
+ hid_t type_id = H5I_INVALID_HID;
+ int ndims = -1;
+ int ret_value = FAIL;
/*
* This function fails if the region does not have blocks.
@@ -1135,50 +1331,56 @@ h5str_dump_region_blocks_data
nblocks = H5Sget_select_hyper_nblocks(region);
} H5E_END_TRY;
+ if (nblocks < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
/* Print block information */
- if (nblocks > 0) {
- alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
- if (alloc_size == (hsize_t)((size_t) alloc_size)) {
- ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
- H5Sget_select_hyper_blocklist(region, (hsize_t) 0,
- (hsize_t) nblocks, ptdata);
+ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
+ if (alloc_size == (hsize_t)((size_t) alloc_size)) {
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks_data: failed to allocate region block buffer");
+ if (H5Sget_select_hyper_blocklist(region, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if((dtype = H5Dget_type(region_id)) >= 0) {
- if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) {
+ if ((dtype = H5Dget_type(region_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- h5str_print_region_data_blocks(region_id, str, ndims, type_id, nblocks, ptdata);
+ if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if(H5Tclose(type_id) < 0)
- ret_value = -1;
- } /* end if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) */
- else
- ret_value = -1;
+ if (h5str_print_region_data_blocks(ENVONLY, region_id, str, ndims, type_id, nblocks, ptdata) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
- if(H5Tclose(dtype) < 0)
- ret_value = -1;
- } /* end if((dtype = H5Dget_type(region_id)) >= 0) */
- else
- ret_value = -1;
- HDfree(ptdata);
- } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
- } /* if (nblocks > 0) */
+ ret_value = SUCCEED;
+
+done:
+ if (type_id >= 0)
+ H5Tclose(type_id);
+ if (dtype >= 0)
+ H5Tclose(dtype);
+ if (ptdata)
+ HDfree(ptdata);
return ret_value;
} /* end h5str_dump_region_blocks_data */
static int
h5str_dump_region_blocks
- (h5str_t *str, hid_t region, hid_t region_id)
+ (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
- int ret_value = 0;
- hssize_t nblocks;
- hsize_t alloc_size;
- hsize_t *ptdata;
- hid_t dtype = -1;
- hid_t type_id = -1;
- char tmp_str[256];
- int ndims = H5Sget_simple_extent_ndims(region);
+ hssize_t nblocks;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ char tmp_str[256];
+ int ndims = -1;
+ int ret_value = FAIL;
+
+ UNUSED(region_id);
/*
* This function fails if the region does not have blocks.
@@ -1187,44 +1389,70 @@ h5str_dump_region_blocks
nblocks = H5Sget_select_hyper_nblocks(region);
} H5E_END_TRY;
+ if (nblocks < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
/* Print block information */
- if (nblocks > 0) {
+ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
+ if (alloc_size == (hsize_t)((size_t) alloc_size)) {
int i;
- alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
- if (alloc_size == (hsize_t)((size_t) alloc_size)) {
- ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
- H5Sget_select_hyper_blocklist(region, (hsize_t) 0,
- (hsize_t) nblocks, ptdata);
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer");
- h5str_append(str, " {");
- for (i = 0; i < nblocks; i++) {
- int j;
+ if (H5Sget_select_hyper_blocklist(region, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- h5str_append(str, " ");
+ if (!h5str_append(str, " {"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- /* Start coordinates and opposite corner */
- for (j = 0; j < ndims; j++) {
- tmp_str[0] = '\0';
- sprintf(tmp_str, "%s%lu", j ? "," : "(",
- (unsigned long) ptdata[i * 2 * ndims + j]);
- h5str_append(str, tmp_str);
- }
+ for (i = 0; i < nblocks; i++) {
+ int j;
- for (j = 0; j < ndims; j++) {
- tmp_str[0] = '\0';
- sprintf(tmp_str, "%s%lu", j ? "," : ")-(",
- (unsigned long) ptdata[i * 2 * ndims + j + ndims]);
- h5str_append(str, tmp_str);
- }
- h5str_append(str, ") ");
+ if (!h5str_append(str, " "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /* Start coordinates and opposite corner */
+ for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
+
+ if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(",
+ (unsigned long) ptdata[i * 2 * ndims + j]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure");
+
+ if (!h5str_append(str, tmp_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+ for (j = 0; j < ndims; j++) {
+ tmp_str[0] = '\0';
+
+ if (HDsprintf(tmp_str, "%s%lu", j ? "," : ")-(",
+ (unsigned long) ptdata[i * 2 * ndims + j + ndims]) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure");
+
+ if (!h5str_append(str, tmp_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
- h5str_append(str, " }");
- HDfree(ptdata);
- } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
- } /* if (nblocks > 0) */
+ if (!h5str_append(str, ") "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ tmp_str[0] = '\0';
+ }
+
+ if (!h5str_append(str, " }"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
+
+ ret_value = SUCCEED;
+
+done:
+ if (ptdata)
+ HDfree(ptdata);
return ret_value;
} /* end h5str_dump_region_blocks */
@@ -1241,76 +1469,76 @@ h5str_dump_region_blocks
*/
static int
h5str_print_region_data_points
- (hid_t region_space, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata)
+ (JNIEnv *env, hid_t region_space, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata)
{
- hsize_t *dims1 = NULL;
- hsize_t total_size[H5S_MAX_RANK];
- size_t jndx;
- size_t type_size;
- int ret_value = SUCCEED;
- hid_t mem_space = -1;
- void *region_buf = NULL;
+ hsize_t *dims1 = NULL;
+ hsize_t total_size[H5S_MAX_RANK];
+ size_t jndx;
+ size_t type_size;
+ hid_t mem_space = H5I_INVALID_HID;
+ void *region_buf = NULL;
+ int ret_value = FAIL;
+
+ UNUSED(ptdata);
+
+ if (npoints < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_points: npoints < 0");
/* Allocate space for the dimension array */
- if((dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
+ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate dimension array buffer");
- dims1[0] = (hsize_t)npoints;
+ dims1[0] = (hsize_t)npoints;
- /* Create dataspace for reading buffer */
- if((mem_space = H5Screate_simple(1, dims1, NULL)) >= 0) {
+ /* Create dataspace for reading buffer */
+ if ((mem_space = H5Screate_simple(1, dims1, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if((type_size = H5Tget_size(type_id)) > 0) {
+ if (!(type_size = H5Tget_size(type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
- if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) {
+ if (NULL == (region_buf = HDmalloc(type_size * (size_t)npoints)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate region buffer");
- if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) >= 0) {
+ if (H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- for (jndx = 0; jndx < npoints; jndx++) {
- if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) {
+ for (jndx = 0; jndx < (size_t) npoints; jndx++) {
+ if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- h5str_sprintf(str, region_id, type_id, ((char*)region_buf + jndx * type_size), 0, 1);
+ if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 0, 1))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (jndx + 1 < npoints)
- h5str_append(str, ", ");
+ if (jndx + 1 < (size_t) npoints)
+ if (!h5str_append(str, ", "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ } /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */
- } /* end if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) */
- } /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */
- } /* end if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) >= 0) */
- else
- ret_value = -1;
+ ret_value = SUCCEED;
- HDfree(region_buf);
- } /* end if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) */
- else
- ret_value = -1;
- } /* end if((type_size = H5Tget_size(type_id)) > 0) */
- else
- ret_value = -1;
-
- if(H5Sclose(mem_space) < 0)
- ret_value = -1;
- } /* end if((mem_space = H5Screate_simple(1, dims1, NULL)) >= 0) */
- else
- ret_value = -1;
+done:
+ if (region_buf)
+ HDfree(region_buf);
+ if (mem_space >= 0)
+ H5Sclose(mem_space);
+ if (dims1)
HDfree(dims1);
- } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
return ret_value;
} /* end h5str_print_region_data_points */
int
h5str_dump_region_points_data
- (h5str_t *str, hid_t region, hid_t region_id)
+ (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
- int ret_value = 0;
- hssize_t npoints;
- hsize_t alloc_size;
- hsize_t *ptdata;
- hid_t dtype = -1;
- hid_t type_id = -1;
- int ndims = H5Sget_simple_extent_ndims(region);
+ hssize_t npoints;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ hid_t dtype = H5I_INVALID_HID;
+ hid_t type_id = H5I_INVALID_HID;
+ int ndims = -1;
+ int ret_value = FAIL;
/*
* This function fails if the region does not have points.
@@ -1319,50 +1547,59 @@ h5str_dump_region_points_data
npoints = H5Sget_select_elem_npoints(region);
} H5E_END_TRY;
+ if (npoints < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
/* Print point information */
if (npoints > 0) {
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
if (alloc_size == (hsize_t)((size_t) alloc_size)) {
- ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
- H5Sget_select_elem_pointlist(region, (hsize_t) 0,
- (hsize_t) npoints, ptdata);
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points_data: failed to allocate region point data buffer");
- if((dtype = H5Dget_type(region_id)) >= 0) {
- if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) {
+ if (H5Sget_select_elem_pointlist(region, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- h5str_print_region_data_points(region, region_id,
- str, ndims, type_id, npoints, ptdata);
+ if ((dtype = H5Dget_type(region_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if(H5Tclose(type_id) < 0)
- ret_value = -1;
- } /* end if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) */
- else
- ret_value = -1;
-
- if(H5Tclose(dtype) < 0)
- ret_value = -1;
- } /* end if((dtype = H5Dget_type(region_id)) >= 0) */
- else
- ret_value = -1;
- HDfree(ptdata);
+ if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (h5str_print_region_data_points(ENVONLY, region, region_id,
+ str, ndims, type_id, npoints, ptdata) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
}
+ ret_value = SUCCEED;
+
+done:
+ if (type_id >= 0)
+ H5Tclose(type_id);
+ if (dtype >= 0)
+ H5Tclose(dtype);
+ if (ptdata)
+ HDfree(ptdata);
+
return ret_value;
} /* end h5str_dump_region_points_data */
static int
h5str_dump_region_points
- (h5str_t *str, hid_t region, hid_t region_id)
+ (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
- int ret_value = 0;
- hssize_t npoints;
- hsize_t alloc_size;
- hsize_t *ptdata;
- char tmp_str[256];
- hid_t dtype = -1;
- hid_t type_id = -1;
- int ndims = H5Sget_simple_extent_ndims(region);
+ hssize_t npoints;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ char tmp_str[256];
+ int ndims = -1;
+ int ret_value = FAIL;
+
+ UNUSED(region_id);
/*
* This function fails if the region does not have points.
@@ -1371,37 +1608,59 @@ h5str_dump_region_points
npoints = H5Sget_select_elem_npoints(region);
} H5E_END_TRY;
+ if (npoints < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
/* Print point information */
if (npoints > 0) {
int i;
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
if (alloc_size == (hsize_t)((size_t) alloc_size)) {
- ptdata = (hsize_t *)HDmalloc((size_t) alloc_size);
- H5Sget_select_elem_pointlist(region, (hsize_t) 0,
- (hsize_t) npoints, ptdata);
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: failed to allocate region point buffer");
+
+ if (H5Sget_select_elem_pointlist(region, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (!h5str_append(str, " {"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- h5str_append(str, " {");
for (i = 0; i < npoints; i++) {
int j;
- h5str_append(str, " ");
+ if (!h5str_append(str, " "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
- sprintf(tmp_str, "%s%lu", j ? "," : "(",
- (unsigned long) (ptdata[i * ndims + j]));
- h5str_append(str, tmp_str);
+
+ if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(",
+ (unsigned long) (ptdata[i * ndims + j])) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure");
+
+ if (!h5str_append(str, tmp_str))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end for (j = 0; j < ndims; j++) */
- h5str_append(str, ") ");
+ if (!h5str_append(str, ") "))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end for (i = 0; i < npoints; i++) */
- h5str_append(str, " }");
- HDfree(ptdata);
+ if (!h5str_append(str, " }"))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end if (alloc_size == (hsize_t)((size_t) alloc_size)) */
} /* end if (npoints > 0) */
+ ret_value = SUCCEED;
+
+done:
+ if (ptdata)
+ HDfree(ptdata);
+
return ret_value;
} /* end h5str_dump_region_points */
@@ -1419,6 +1678,37 @@ h5str_is_zero
} /* end h5str_is_zero */
/*-------------------------------------------------------------------------
+ * Function: h5str_detect_vlen
+ *
+ * Purpose: Recursive check for any variable length data in given type.
+ *
+ * Return:
+ * 1 : type contains any variable length data
+ * 0 : type doesn't contain any variable length data
+ * Negative value: error occurred
+ *-------------------------------------------------------------------------
+ */
+static htri_t
+h5str_detect_vlen
+ (hid_t tid)
+{
+ htri_t ret = FAIL;
+
+ /* Recursively detect any vlen data values in type (compound, array ...) */
+ ret = H5Tdetect_class(tid, H5T_VLEN);
+ if ((ret == 1) || (ret < 0))
+ goto done;
+
+ /* Recursively detect any vlen string in type (compound, array ...) */
+ ret = h5str_detect_vlen_str(tid);
+ if ((ret == 1) || (ret < 0))
+ goto done;
+
+done:
+ return ret;
+} /* end h5str_detect_vlen */
+
+/*-------------------------------------------------------------------------
* Function: h5str_detect_vlen_str
*
* Purpose: Recursive check for variable length string of a datatype.
@@ -1459,12 +1749,10 @@ h5str_detect_vlen_str
unsigned i = 0;
int n = H5Tget_nmembers(tid);
- if(n < 0) {
- n = ret;
+ if (n < 0)
goto done;
- } /* end if */
- for(i = 0; i < n; i++) {
+ for(i = 0; i < (unsigned) n; i++) {
hid_t mtid = H5Tget_member_type(tid, i);
ret = h5str_detect_vlen_str(mtid);
@@ -1494,15 +1782,18 @@ static hid_t
h5str_get_native_type
(hid_t type)
{
- hid_t p_type;
H5T_class_t type_class;
+ hid_t p_type = H5I_INVALID_HID;
- type_class = H5Tget_class(type);
- if(type_class==H5T_BITFIELD)
- p_type=H5Tcopy(type);
+ if ((type_class = H5Tget_class(type)) < 0)
+ goto done;
+
+ if (type_class == H5T_BITFIELD)
+ p_type = H5Tcopy(type);
else
- p_type = H5Tget_native_type(type,H5T_DIR_DEFAULT);
+ p_type = H5Tget_native_type(type, H5T_DIR_DEFAULT);
+done:
return(p_type);
} /* end h5str_get_native_type */
@@ -1520,73 +1811,89 @@ static hid_t
h5str_get_little_endian_type
(hid_t tid)
{
- hid_t p_type=-1;
H5T_class_t type_class;
- size_t size;
H5T_sign_t sign;
+ size_t size;
+ hid_t p_type = H5I_INVALID_HID;
- type_class = H5Tget_class(tid);
- size = H5Tget_size(tid);
- sign = H5Tget_sign(tid);
+ if ((type_class = H5Tget_class(tid)) < 0)
+ goto done;
- switch( type_class )
- {
- case H5T_INTEGER:
- {
- if ( size == 1 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I8LE);
- else if ( size == 2 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I16LE);
- else if ( size == 4 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I32LE);
- else if ( size == 8 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I64LE);
- else if ( size == 1 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U8LE);
- else if ( size == 2 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U16LE);
- else if ( size == 4 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U32LE);
- else if ( size == 8 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U64LE);
- }
- break;
+ if (!(size = H5Tget_size(tid)))
+ goto done;
- case H5T_FLOAT:
- if ( size == 4)
- p_type=H5Tcopy(H5T_IEEE_F32LE);
- else if ( size == 8)
- p_type=H5Tcopy(H5T_IEEE_F64LE);
- break;
+ if ((sign = H5Tget_sign(tid)) < 0)
+ goto done;
- case H5T_BITFIELD:
- {
- if ( size == 1)
- p_type=H5Tcopy(H5T_STD_B8LE);
- else if ( size == 2)
- p_type=H5Tcopy(H5T_STD_B16LE);
- else if ( size == 4)
- p_type=H5Tcopy(H5T_STD_B32LE);
- else if ( size == 8)
- p_type=H5Tcopy(H5T_STD_B64LE);
- }
- break;
+ switch ( type_class ) {
+ case H5T_INTEGER:
+ {
+ if ( size == 1 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I8LE);
+ else if ( size == 2 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I16LE);
+ else if ( size == 4 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I32LE);
+ else if ( size == 8 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I64LE);
+ else if ( size == 1 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U8LE);
+ else if ( size == 2 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U16LE);
+ else if ( size == 4 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U32LE);
+ else if ( size == 8 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U64LE);
+
+ break;
+ }
- case H5T_TIME:
- case H5T_OPAQUE:
- case H5T_STRING:
- case H5T_COMPOUND:
- case H5T_REFERENCE:
- case H5T_ENUM:
- case H5T_VLEN:
- case H5T_ARRAY:
- break;
+ case H5T_FLOAT:
+ {
+ if ( size == 4 )
+ p_type = H5Tcopy(H5T_IEEE_F32LE);
+ else if ( size == 8 )
+ p_type = H5Tcopy(H5T_IEEE_F64LE);
- default:
- break;
+ break;
+ }
+ case H5T_BITFIELD:
+ {
+ if ( size == 1 )
+ p_type = H5Tcopy(H5T_STD_B8LE);
+ else if ( size == 2 )
+ p_type = H5Tcopy(H5T_STD_B16LE);
+ else if ( size == 4 )
+ p_type = H5Tcopy(H5T_STD_B32LE);
+ else if ( size == 8 )
+ p_type = H5Tcopy(H5T_STD_B64LE);
+
+ break;
+ }
+
+ case H5T_NO_CLASS:
+ case H5T_NCLASSES:
+ {
+ goto done;
+ break;
+ }
+
+ case H5T_TIME:
+ case H5T_OPAQUE:
+ case H5T_STRING:
+ case H5T_COMPOUND:
+ case H5T_REFERENCE:
+ case H5T_ENUM:
+ case H5T_VLEN:
+ case H5T_ARRAY:
+ break;
+
+ default:
+ break;
}
+done:
return(p_type);
} /* end h5str_get_little_endian_type */
@@ -1603,106 +1910,91 @@ static hid_t
h5str_get_big_endian_type
(hid_t tid)
{
- hid_t p_type=-1;
H5T_class_t type_class;
- size_t size;
H5T_sign_t sign;
+ size_t size;
+ hid_t p_type = H5I_INVALID_HID;
- type_class = H5Tget_class(tid);
- size = H5Tget_size(tid);
- sign = H5Tget_sign(tid);
-
- switch( type_class )
- {
- case H5T_INTEGER:
- {
- if ( size == 1 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I8BE);
- else if ( size == 2 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I16BE);
- else if ( size == 4 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I32BE);
- else if ( size == 8 && sign == H5T_SGN_2)
- p_type=H5Tcopy(H5T_STD_I64BE);
- else if ( size == 1 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U8BE);
- else if ( size == 2 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U16BE);
- else if ( size == 4 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U32BE);
- else if ( size == 8 && sign == H5T_SGN_NONE)
- p_type=H5Tcopy(H5T_STD_U64BE);
- }
- break;
-
- case H5T_FLOAT:
- if ( size == 4)
- p_type=H5Tcopy(H5T_IEEE_F32BE);
- else if ( size == 8)
- p_type=H5Tcopy(H5T_IEEE_F64BE);
- break;
+ if ((type_class = H5Tget_class(tid)) < 0)
+ goto done;
- case H5T_BITFIELD:
- {
- if ( size == 1)
- p_type=H5Tcopy(H5T_STD_B8BE);
- else if ( size == 2)
- p_type=H5Tcopy(H5T_STD_B16BE);
- else if ( size == 4)
- p_type=H5Tcopy(H5T_STD_B32BE);
- else if ( size == 8)
- p_type=H5Tcopy(H5T_STD_B64BE);
- }
- break;
+ if (!(size = H5Tget_size(tid)))
+ goto done;
- case H5T_TIME:
- case H5T_OPAQUE:
- case H5T_STRING:
- case H5T_COMPOUND:
- case H5T_REFERENCE:
- case H5T_ENUM:
- case H5T_VLEN:
- case H5T_ARRAY:
- break;
+ if ((sign = H5Tget_sign(tid)) < 0)
+ goto done;
- default:
- break;
+ switch ( type_class ) {
+ case H5T_INTEGER:
+ {
+ if ( size == 1 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I8BE);
+ else if ( size == 2 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I16BE);
+ else if ( size == 4 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I32BE);
+ else if ( size == 8 && sign == H5T_SGN_2 )
+ p_type = H5Tcopy(H5T_STD_I64BE);
+ else if ( size == 1 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U8BE);
+ else if ( size == 2 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U16BE);
+ else if ( size == 4 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U32BE);
+ else if ( size == 8 && sign == H5T_SGN_NONE )
+ p_type = H5Tcopy(H5T_STD_U64BE);
+
+ break;
+ }
- }
+ case H5T_FLOAT:
+ {
+ if ( size == 4 )
+ p_type = H5Tcopy(H5T_IEEE_F32BE);
+ else if ( size == 8 )
+ p_type = H5Tcopy(H5T_IEEE_F64BE);
- return(p_type);
-} /* end h5str_get_big_endian_type */
+ break;
+ }
-/*-------------------------------------------------------------------------
- * Function: h5str_detect_vlen
- *
- * Purpose: Recursive check for any variable length data in given type.
- *
- * Return:
- * 1 : type conatains any variable length data
- * 0 : type doesn't contain any variable length data
- * Negative value: error occur
- *-------------------------------------------------------------------------
- */
-static htri_t
-h5str_detect_vlen
- (hid_t tid)
-{
- htri_t ret;
+ case H5T_BITFIELD:
+ {
+ if ( size == 1 )
+ p_type = H5Tcopy(H5T_STD_B8BE);
+ else if ( size == 2 )
+ p_type = H5Tcopy(H5T_STD_B16BE);
+ else if ( size == 4 )
+ p_type = H5Tcopy(H5T_STD_B32BE);
+ else if ( size == 8 )
+ p_type = H5Tcopy(H5T_STD_B64BE);
+
+ break;
+ }
- /* recursive detect any vlen data values in type (compound, array ...) */
- ret = H5Tdetect_class(tid, H5T_VLEN);
- if((ret == 1) || (ret < 0))
- goto done;
+ case H5T_NO_CLASS:
+ case H5T_NCLASSES:
+ {
+ goto done;
+ break;
+ }
- /* recursive detect any vlen string in type (compound, array ...) */
- ret = h5str_detect_vlen_str(tid);
- if((ret == 1) || (ret < 0))
- goto done;
+ case H5T_TIME:
+ case H5T_OPAQUE:
+ case H5T_STRING:
+ case H5T_COMPOUND:
+ case H5T_REFERENCE:
+ case H5T_ENUM:
+ case H5T_VLEN:
+ case H5T_ARRAY:
+ break;
+
+ default:
+ break;
+ }
done:
- return ret;
-} /* end h5str_detect_vlen */
+ return(p_type);
+} /* end h5str_get_big_endian_type */
/*-------------------------------------------------------------------------
* Function: render_bin_output
@@ -1717,201 +2009,261 @@ static int
h5str_render_bin_output
(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts)
{
- int ret_value = 0;
- unsigned char *mem = (unsigned char*)_mem;
- size_t size; /* datum size */
- hsize_t block_index;
- H5T_class_t type_class;
-
- if((size = H5Tget_size(tid)) > 0) {
-
- if((type_class = H5Tget_class(tid)) >= 0) {
-
- switch (type_class) {
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_ENUM:
- block_index = block_nelmts * size;
- while(block_index > 0) {
- size_t bytes_in = 0; /* # of bytes to write */
- size_t bytes_wrote = 0; /* # of bytes written */
- size_t item_size = size; /* size of items in bytes */
-
- if(block_index > sizeof(size_t))
- bytes_in = sizeof(size_t);
- else
- bytes_in = (size_t)block_index;
+ unsigned char *mem = (unsigned char*)_mem;
+ H5T_class_t type_class;
+ hsize_t block_index;
+ size_t size; /* datum size */
+ int ret_value = 0;
+
+ if (!(size = H5Tget_size(tid))) {
+ ret_value = FAIL;
+ goto done;
+ }
- bytes_wrote = fwrite(mem, 1, bytes_in, stream);
+ if ((type_class = H5Tget_class(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
- if(bytes_wrote != bytes_in || (0 == bytes_wrote && ferror(stream))) {
- ret_value = -1;
- break;
- }
+ switch (type_class) {
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_ENUM:
+ {
+ block_index = block_nelmts * size;
+ while (block_index > 0) {
+ size_t bytes_in = 0; /* # of bytes to write */
+ size_t bytes_wrote = 0; /* # of bytes written */
- block_index -= (hsize_t)bytes_wrote;
- mem = mem + bytes_wrote;
- }
+ if (block_index > sizeof(size_t))
+ bytes_in = sizeof(size_t);
+ else
+ bytes_in = (size_t)block_index;
+
+ bytes_wrote = fwrite(mem, 1, bytes_in, stream);
+
+ if (bytes_wrote != bytes_in || (0 == bytes_wrote && ferror(stream))) {
+ ret_value = FAIL;
break;
- case H5T_STRING:
- {
- unsigned int i;
- H5T_str_t pad;
- char *s;
- unsigned char tempuchar;
+ }
- pad = H5Tget_strpad(tid);
+ block_index -= (hsize_t)bytes_wrote;
+ mem = mem + bytes_wrote;
+ }
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
+ break;
+ }
- if (H5Tis_variable_str(tid)) {
- s = *(char**) mem;
- if (s != NULL)
- size = HDstrlen(s);
- }
- else {
- s = (char *) mem;
- }
- for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) {
- HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char));
- if (1 != fwrite(&tempuchar, sizeof(unsigned char), 1, stream)) {
- ret_value = -1;
- break;
- }
- } /* i */
- if(ret_value < 0)
- break;
- } /* for (block_index = 0; block_index < block_nelmts; block_index++) */
+ case H5T_STRING:
+ {
+ unsigned char tempuchar;
+ unsigned int i;
+ H5T_str_t pad;
+ char *s;
+
+ if ((pad = H5Tget_strpad(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char *)_mem) + block_index * size;
+
+ if (H5Tis_variable_str(tid)) {
+ s = *(char**) mem;
+ if (s != NULL)
+ size = HDstrlen(s);
}
- break;
- case H5T_COMPOUND:
- {
- unsigned j;
- hid_t memb;
- unsigned nmembs;
- size_t offset;
-
- nmembs = (unsigned)H5Tget_nmembers(tid);
-
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- for (j = 0; j < nmembs; j++) {
- offset = H5Tget_member_offset(tid, j);
- memb = H5Tget_member_type(tid, j);
-
- if (h5str_render_bin_output(stream, container, memb, mem + offset, 1) < 0) {
- H5Tclose(memb);
- ret_value = -1;
- break;
- }
-
- H5Tclose(memb);
- }
- if(ret_value < 0)
- break;
- }
+ else {
+ s = (char *) mem;
}
- break;
- case H5T_ARRAY:
- {
- int k, ndims;
- hsize_t dims[H5S_MAX_RANK], temp_nelmts, nelmts;
- hid_t memb;
-
- /* get the array's base datatype for each element */
- memb = H5Tget_super(tid);
- ndims = H5Tget_array_ndims(tid);
- H5Tget_array_dims2(tid, dims);
-
- /* calculate the number of array elements */
- for (k = 0, nelmts = 1; k < ndims; k++) {
- temp_nelmts = nelmts;
- temp_nelmts *= dims[k];
- nelmts = (size_t) temp_nelmts;
+ for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) {
+ HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char));
+ if (1 != fwrite(&tempuchar, sizeof(unsigned char), 1, stream)) {
+ ret_value = FAIL;
+ break;
}
+ } /* i */
+ if (ret_value < 0)
+ break;
+ } /* for (block_index = 0; block_index < block_nelmts; block_index++) */
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- /* dump the array element */
- if (h5str_render_bin_output(stream, container, memb, mem, nelmts) < 0) {
- ret_value = -1;
- break;
- }
+ break;
+ }
+
+ case H5T_COMPOUND:
+ {
+ unsigned j;
+ size_t offset;
+ hid_t memb = H5I_INVALID_HID;
+ int nmembs;
+
+ if ((nmembs = H5Tget_nmembers(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+ for (j = 0; j < (unsigned) nmembs; j++) {
+ offset = H5Tget_member_offset(tid, j);
+ memb = H5Tget_member_type(tid, j);
+
+ if (h5str_render_bin_output(stream, container, memb, mem + offset, 1) < 0) {
+ H5Tclose(memb);
+ ret_value = FAIL;
+ break;
}
+
H5Tclose(memb);
}
- break;
- case H5T_VLEN:
- {
- hsize_t nelmts;
- hid_t memb;
- /* get the VL sequences's base datatype for each element */
- memb = H5Tget_super(tid);
+ if (ret_value < 0)
+ break;
+ }
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- /* Get the number of sequence elements */
- nelmts = ((hvl_t *) mem)->len;
+ break;
+ }
- /* dump the array element */
- if (h5str_render_bin_output(stream, container, memb, ((char *) (((hvl_t *) mem)->p)), nelmts) < 0) {
- ret_value = -1;
- break;
- }
- }
- H5Tclose(memb);
+ case H5T_ARRAY:
+ {
+ hsize_t dims[H5S_MAX_RANK], temp_nelmts, nelmts;
+ hid_t memb;
+ int k, ndims;
+
+ /* Get the array's base datatype for each element */
+ if ((memb = H5Tget_super(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((ndims = H5Tget_array_ndims(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Tget_array_dims2(tid, dims) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Calculate the number of array elements */
+ for (k = 0, nelmts = 1; k < ndims; k++) {
+ temp_nelmts = nelmts;
+ temp_nelmts *= dims[k];
+ nelmts = (size_t) temp_nelmts;
+ }
+
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+
+ /* dump the array element */
+ if (h5str_render_bin_output(stream, container, memb, mem, nelmts) < 0) {
+ ret_value = FAIL;
+ break;
}
- break;
- case H5T_REFERENCE:
- {
- if (H5Tequal(tid, H5T_STD_REF_DSETREG)) {
- /* region data */
- hid_t region_id, region_space;
- H5S_sel_type region_type;
-
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, mem);
- if (region_id >= 0) {
- region_space = H5Rget_region(container, H5R_DATASET_REGION, mem);
- if (region_space >= 0) {
- region_type = H5Sget_select_type(region_space);
- if(region_type == H5S_SEL_POINTS)
- ret_value = render_bin_output_region_points(stream, region_space, region_id, container);
- else
- ret_value = render_bin_output_region_blocks(stream, region_space, region_id, container);
- H5Sclose(region_space);
- } /* end if (region_space >= 0) */
- H5Dclose(region_id);
- } /* end if (region_id >= 0) */
- if(ret_value < 0)
- break;
- }
+ }
+
+ H5Tclose(memb);
+
+ break;
+ }
+
+ case H5T_VLEN:
+ {
+ hsize_t nelmts;
+ hid_t memb;
+
+ /* Get the VL sequences's base datatype for each element */
+ if ((memb = H5Tget_super(tid)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+
+ /* Get the number of sequence elements */
+ nelmts = ((hvl_t *) mem)->len;
+
+ /* dump the array element */
+ if (h5str_render_bin_output(stream, container, memb, ((char *) (((hvl_t *) mem)->p)), nelmts) < 0) {
+ ret_value = FAIL;
+ break;
+ }
+ }
+
+ H5Tclose(memb);
+
+ break;
+ }
+
+ case H5T_REFERENCE:
+ {
+ if (H5Tequal(tid, H5T_STD_REF_DSETREG)) {
+ H5S_sel_type region_type;
+ hid_t region_id, region_space;
+
+ /* Region data */
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+
+ if ((region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, mem)) < 0)
+ continue;
+
+ if ((region_space = H5Rget_region(container, H5R_DATASET_REGION, mem)) < 0) {
+ H5Dclose(region_id);
+ continue;
}
- else if (H5Tequal(tid, H5T_STD_REF_OBJ)) {
- ;
+
+ if ((region_type = H5Sget_select_type(region_space)) < 0) {
+ H5Sclose(region_space);
+ H5Dclose(region_id);
+ continue;
}
+
+ if (region_type == H5S_SEL_POINTS)
+ ret_value = render_bin_output_region_points(stream, region_space, region_id, container);
+ else
+ ret_value = render_bin_output_region_blocks(stream, region_space, region_id, container);
+
+ H5Sclose(region_space);
+ H5Dclose(region_id);
+
+ if (ret_value < 0)
+ break;
}
- break;
- default:
- for (block_index = 0; block_index < block_nelmts; block_index++) {
- mem = ((unsigned char*)_mem) + block_index * size;
- if (size != fwrite(mem, sizeof(char), size, stream)) {
- ret_value = -1;
- break;
- }
- }
+ }
+ else if (H5Tequal(tid, H5T_STD_REF_OBJ)) {
+ ;
+ }
+
+ break;
+ }
+
+ case H5T_NO_CLASS:
+ case H5T_NCLASSES:
+ {
+ ret_value = FAIL;
+ goto done;
+ break;
+ }
+
+ case H5T_TIME:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ default:
+ for (block_index = 0; block_index < block_nelmts; block_index++) {
+ mem = ((unsigned char*)_mem) + block_index * size;
+ if (size != fwrite(mem, sizeof(char), size, stream)) {
+ ret_value = FAIL;
break;
+ }
}
- } /* end if((type_class = H5Tget_class(tid)) >= 0) */
- else
- ret_value = -1;
- } /* end if((size = H5Tget_size(tid)) > 0) */
- else
- ret_value = -1;
+ break;
+ }
+done:
return ret_value;
} /* end h5str_render_bin_output */
@@ -1930,96 +2282,107 @@ static int
render_bin_output_region_data_blocks
(FILE *stream, hid_t region_id, hid_t container, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata)
{
- hsize_t *dims1 = NULL;
- hsize_t *start = NULL;
- hsize_t *count = NULL;
- hsize_t numelem;
- hsize_t total_size[H5S_MAX_RANK];
- int jndx;
- size_t type_size;
- hid_t mem_space = -1;
- void *region_buf = NULL;
- int blkndx;
- hid_t sid1 = -1;
- int ret_value = SUCCEED;
+ hsize_t *dims1 = NULL;
+ hsize_t *start = NULL;
+ hsize_t *count = NULL;
+ hsize_t numelem;
+ hsize_t total_size[H5S_MAX_RANK];
+ size_t type_size;
+ hid_t sid1 = H5I_INVALID_HID;
+ hid_t mem_space = H5I_INVALID_HID;
+ void *region_buf = NULL;
+ int blkndx;
+ int jndx;
+ int ret_value = SUCCEED;
/* Get the dataspace of the dataset */
- if((sid1 = H5Dget_space(region_id)) >= 0) {
- /* Allocate space for the dimension array */
- if((dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- /* find the dimensions of each data space from the block coordinates */
- numelem = 1;
- for (jndx = 0; jndx < ndims; jndx++) {
- dims1[jndx] = ptdata[jndx + ndims] - ptdata[jndx] + 1;
- numelem = dims1[jndx] * numelem;
- }
+ if ((sid1 = H5Dget_space(region_id)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
- /* Create dataspace for reading buffer */
- if((mem_space = H5Screate_simple(ndims, dims1, NULL)) >= 0) {
- if((type_size = H5Tget_size(type_id)) > 0) {
- if((region_buf = HDmalloc(type_size * (size_t)numelem)) != NULL) {
- /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
- /* 1 2 n 1 2 n */
- if((start = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- if((count = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- for (blkndx = 0; blkndx < nblocks; blkndx++) {
- for (jndx = 0; jndx < ndims; jndx++) {
- start[jndx] = ptdata[jndx + blkndx * ndims * 2];
- count[jndx] = dims1[jndx];
- }
-
- if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) {
- if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) {
- if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) {
- ret_value = h5str_render_bin_output(stream, container, type_id, (char*)region_buf, numelem);
- } /* end if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) */
- else {
- ret_value = -1;
- break;
- }
- } /* end if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) >= 0) */
- else {
- ret_value = -1;
- break;
- }
- } /* end if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) >= 0) */
- else {
- ret_value = -1;
- break;
- }
- /* Render the region data element end */
- } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
-
- HDfree(count);
- } /* end if((count = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
- HDfree(start);
- } /* end if((start = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
- HDfree(region_buf);
- } /* end if((region_buf = HDmalloc(type_size * (size_t)numelem)) != NULL) */
- else
- ret_value = -1;
- } /* end if((type_size = H5Tget_size(type_id)) > 0) */
- else
- ret_value = -1;
-
- if(H5Sclose(mem_space) < 0)
- ret_value = -1;
- } /* end if((mem_space = H5Screate_simple(ndims, dims1, NULL)) >= 0) */
- else
- ret_value = -1;
- HDfree(dims1);
- } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
- if(H5Sclose(sid1) < 0)
- ret_value = -1;
- } /* end if((sid1 = H5Dget_space(region_id)) >= 0) */
- else
- ret_value = -1;
+ /* Allocate space for the dimension array */
+ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Find the dimensions of each data space from the block coordinates */
+ for (jndx = 0, numelem = 1; jndx < ndims; jndx++) {
+ dims1[jndx] = ptdata[jndx + ndims] - ptdata[jndx] + 1;
+ numelem = dims1[jndx] * numelem;
+ }
+
+ /* Create dataspace for reading buffer */
+ if ((mem_space = H5Screate_simple(ndims, dims1, NULL)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (!(type_size = H5Tget_size(type_id))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (NULL == (region_buf = HDmalloc(type_size * (size_t)numelem))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
+ /* 1 2 n 1 2 n */
+ if (NULL == (start = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (NULL == (count = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ for (blkndx = 0; blkndx < nblocks; blkndx++) {
+ for (jndx = 0; jndx < ndims; jndx++) {
+ start[jndx] = ptdata[jndx + blkndx * ndims * 2];
+ count[jndx] = dims1[jndx];
+ }
+
+ if (H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (h5str_render_bin_output(stream, container, type_id, (char *)region_buf, numelem) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Render the region data element end */
+ } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
+
+done:
+ if (count)
+ HDfree(count);
+ if (start)
+ HDfree(start);
+ if (region_buf)
+ HDfree(region_buf);
+ if (mem_space >= 0)
+ H5Sclose(mem_space);
+ if (dims1)
+ HDfree(dims1);
+ if (sid1 >= 0)
+ H5Sclose(sid1);
return ret_value;
} /* end render_bin_output_region_data_blocks */
@@ -2039,50 +2402,62 @@ static int
render_bin_output_region_blocks
(FILE *stream, hid_t region_space, hid_t region_id, hid_t container)
{
- int ret_value = SUCCEED;
- hssize_t nblocks;
- hsize_t alloc_size;
- hsize_t *ptdata = NULL;
- int ndims;
- hid_t dtype;
- hid_t type_id;
-
- if((nblocks = H5Sget_select_hyper_nblocks(region_space)) > 0) {
+ hssize_t nblocks;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ hid_t dtype = H5I_INVALID_HID;
+ hid_t type_id = H5I_INVALID_HID;
+ int ndims;
+ int ret_value = SUCCEED;
+
+ if ((nblocks = H5Sget_select_hyper_nblocks(region_space)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (nblocks > 0) {
/* Print block information */
- if((ndims = H5Sget_simple_extent_ndims(region_space)) >= 0) {
- alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
- if((ptdata = (hsize_t*)HDmalloc((size_t)alloc_size)) != NULL) {
- if(H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) >= 0) {
- if((dtype = H5Dget_type(region_id)) >= 0) {
- if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) {
- ret_value = render_bin_output_region_data_blocks(stream, region_id, container, ndims,
- type_id, nblocks, ptdata);
-
- if(H5Tclose(type_id) < 0)
- ret_value = -1;
- } /* end if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) */
- else
- ret_value = -1;
+ if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
- if(H5Tclose(dtype) < 0)
- ret_value = -1;
- } /* end if((dtype = H5Dget_type(region_id)) >= 0) */
- else
- ret_value = -1;
- } /* end if(H5Sget_select_hyper_blocklist(region_space, (hsize_t) 0, (hsize_t) nblocks, ptdata) >= 0) */
- else
- ret_value = -1;
-
- HDfree(ptdata);
- } /* end if((ptdata = (hsize_t*) HDmalloc((size_t) alloc_size)) != NULL) */
- else
- ret_value = -1;
- } /* end if((ndims = H5Sget_simple_extent_ndims(region_space)) >= 0) */
- else
- ret_value = -1;
- } /* end if((nblocks = H5Sget_select_hyper_nblocks(region_space)) > 0) */
- else
- ret_value = -1;
+ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
+
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t)alloc_size))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((dtype = H5Dget_type(region_id)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (render_bin_output_region_data_blocks(stream, region_id, container,
+ ndims, type_id, nblocks, ptdata) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+ }
+
+done:
+ if (type_id >= 0)
+ H5Tclose(type_id);
+ if (dtype >= 0)
+ H5Tclose(dtype);
+ if (ptdata)
+ HDfree(ptdata);
return ret_value;
} /* end render_bin_output_region_blocks */
@@ -2105,43 +2480,57 @@ render_bin_output_region_data_points
{
hsize_t *dims1 = NULL;
size_t type_size;
- hid_t mem_space = -1;
+ hid_t mem_space = H5I_INVALID_HID;
void *region_buf = NULL;
int ret_value = SUCCEED;
- if((type_size = H5Tget_size(type_id)) > 0) {
- if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) {
- /* Allocate space for the dimension array */
- if((dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims)) != NULL) {
- dims1[0] = (hsize_t)npoints;
- if((mem_space = H5Screate_simple(1, dims1, NULL)) >= 0) {
- if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) >= 0) {
- if(H5Sget_simple_extent_dims(region_space, dims1, NULL) >= 0) {
- ret_value = h5str_render_bin_output(stream, container, type_id, (char*)region_buf, (hsize_t)npoints);
- } /* end if(H5Sget_simple_extent_dims(region_space, dims1, NULL) >= 0) */
- else
- ret_value = -1;
- } /* end if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) >= 0) */
- else
- ret_value = -1;
- } /* end if((mem_space = H5Screate_simple(1, dims1, NULL)) >= 0) */
- else
- ret_value = -1;
-
- HDfree(dims1);
- } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
- else
- ret_value = -1;
- HDfree(region_buf);
- } /* end if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) */
- else
- ret_value = -1;
-
- if(H5Sclose(mem_space) < 0)
- ret_value = -1;
- } /* end if((type_size = H5Tget_size(type_id)) > 0) */
- else
- ret_value = -1;
+ UNUSED(ptdata);
+
+ if (!(type_size = H5Tget_size(type_id))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (NULL == (region_buf = HDmalloc(type_size * (size_t)npoints))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ /* Allocate space for the dimension array */
+ if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ dims1[0] = (hsize_t)npoints;
+
+ if ((mem_space = H5Screate_simple(1, dims1, NULL)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (H5Sget_simple_extent_dims(region_space, dims1, NULL) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (h5str_render_bin_output(stream, container, type_id, (char *)region_buf, (hsize_t)npoints) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+done:
+ if (dims1)
+ HDfree(dims1);
+ if (mem_space >= 0)
+ H5Sclose(mem_space);
+ if (region_buf)
+ HDfree(region_buf);
return ret_value;
} /* end render_bin_output_region_data_points */
@@ -2161,248 +2550,343 @@ static int
render_bin_output_region_points
(FILE *stream, hid_t region_space, hid_t region_id, hid_t container)
{
- int ret_value = SUCCEED;
- hssize_t npoints;
- hsize_t alloc_size;
- hsize_t *ptdata;
- int ndims;
- hid_t dtype;
- hid_t type_id;
-
- if((npoints = H5Sget_select_elem_npoints(region_space)) > 0) {
+ hssize_t npoints;
+ hsize_t alloc_size;
+ hsize_t *ptdata = NULL;
+ hid_t dtype = H5I_INVALID_HID;
+ hid_t type_id = H5I_INVALID_HID;
+ int ndims;
+ int ret_value = SUCCEED;
+
+ if ((npoints = H5Sget_select_elem_npoints(region_space)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (npoints > 0) {
/* Allocate space for the dimension array */
- if((ndims = H5Sget_simple_extent_ndims(region_space)) >= 0) {
- alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
- if(NULL != (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) {
- if(H5Sget_select_elem_pointlist(region_space, (hsize_t)0, (hsize_t)npoints, ptdata) >= 0) {
- if((dtype = H5Dget_type(region_id)) >= 0) {
- if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) {
- ret_value = render_bin_output_region_data_points(stream, region_space, region_id,
- container, ndims, type_id, npoints, ptdata);
-
- if(H5Tclose(type_id) < 0)
- ret_value = -1;
- } /* end if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) >= 0) */
- else
- ret_value = -1;
+ if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
- if(H5Tclose(dtype) < 0)
- ret_value = -1;
- } /* end if((dtype = H5Dget_type(region_id)) >= 0) */
- else
- ret_value = -1;
- } /* end if(H5Sget_select_elem_pointlist(region_space, (hsize_t) 0, (hsize_t) npoints, ptdata) >= 0) */
- else
- ret_value = -1;
+ alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
- HDfree(ptdata);
- } /* end if(NULL != (ptdata = (hsize_t *)HDmalloc((size_t) alloc_size))) */
- else
- ret_value = -1;
- } /* end if((ndims = H5Sget_simple_extent_ndims(region_space)) >= 0) */
- else
- ret_value = -1;
+ if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t)alloc_size))) {
+ ret_value = FAIL;
+ goto done;
+ }
- } /* end if((npoints = H5Sget_select_elem_npoints(region_space)) > 0) */
- else
- ret_value = -1;
+ if (H5Sget_select_elem_pointlist(region_space, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((dtype = H5Dget_type(region_id)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+
+ if (render_bin_output_region_data_points(stream, region_space, region_id,
+ container, ndims, type_id, npoints, ptdata) < 0) {
+ ret_value = FAIL;
+ goto done;
+ }
+ }
+
+done:
+ if (type_id >= 0)
+ H5Tclose(type_id);
+ if (dtype >= 0)
+ H5Tclose(dtype);
+ if (ptdata)
+ HDfree(ptdata);
return ret_value;
} /* end render_bin_output_region_points */
int
h5str_dump_simple_dset
- (FILE *stream, hid_t dset, int binary_order)
+ (JNIEnv *env, FILE *stream, hid_t dset, int binary_order)
{
- int ret_value = SUCCEED;
- hid_t f_space = -1; /* file data space */
- hsize_t elmtno; /* counter */
- size_t i; /* counter */
- int ndims;
- int carry; /* counter carry value */
- hsize_t zero[8]; /* vector of zeros */
- hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
+ hsize_t elmtno; /* counter */
+ hsize_t zero[8]; /* vector of zeros */
+ hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
+ size_t i; /* counter */
+ hid_t f_space = H5I_INVALID_HID; /* file data space */
+ int ndims;
+ int carry; /* counter carry value */
/* Print info */
- size_t p_type_nbytes; /* size of memory type */
- hsize_t p_nelmts; /* total selected elmts */
+ hsize_t p_nelmts; /* total selected elmts */
+ size_t p_type_nbytes; /* size of memory type */
/* Stripmine info */
- hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
- hsize_t sm_nbytes; /* bytes per stripmine */
- hsize_t sm_nelmts; /* elements per stripmine*/
- unsigned char *sm_buf = NULL; /* buffer for raw data */
- hid_t sm_space = -1; /* stripmine data space */
+ unsigned char *sm_buf = NULL; /* buffer for raw data */
+ hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
+ hsize_t sm_nbytes; /* bytes per stripmine */
+ hsize_t sm_nelmts; /* elements per stripmine */
+ hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */
/* Hyperslab info */
- hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
- hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
- hsize_t hs_nelmts; /* elements in request */
+ hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
+ hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
+ hsize_t hs_nelmts; /* elements in request */
/* VL data special information */
- unsigned int vl_data = 0; /* contains VL datatypes */
- hid_t p_type = -1;
- hid_t f_type = -1;
-
- if(dset < 0) return -1;
- f_type = H5Dget_type(dset);
- if (binary_order == 1)
- p_type = h5str_get_native_type(f_type);
- else if (binary_order == 2)
- p_type = h5str_get_little_endian_type(f_type);
- else if (binary_order == 3)
- p_type = h5str_get_big_endian_type(f_type);
- else
- p_type = H5Tcopy(f_type);
+ unsigned int vl_data = 0; /* contains VL datatypes */
+ hid_t p_type = H5I_INVALID_HID;
+ hid_t f_type = H5I_INVALID_HID;
- H5Tclose(f_type);
+ int ret_value = FAIL;
- if (p_type >= 0) {
- if((f_space = H5Dget_space(dset)) >= 0) {
- ndims = H5Sget_simple_extent_ndims(f_space);
+ if (dset < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_dump_simple_dset: dset ID < 0");
- if ((size_t)ndims <= (sizeof(sm_size)/sizeof(sm_size[0]))) {
- H5Sget_simple_extent_dims(f_space, total_size, NULL);
+ if ((f_type = H5Dget_type(dset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- /* calculate the number of elements we're going to print */
- p_nelmts = 1;
+ switch (binary_order) {
+ case 1:
+ {
+ if ((p_type = h5str_get_native_type(f_type)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (ndims > 0) {
- for (i = 0; i < ndims; i++)
- p_nelmts *= total_size[i];
- } /* end if */
+ break;
+ }
+
+ case 2:
+ {
+ if ((p_type = h5str_get_little_endian_type(f_type)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (p_nelmts > 0) {
- /* Check if we have VL data in the dataset's datatype */
- if (h5str_detect_vlen(p_type) != 0)
- vl_data = 1;
+ break;
+ }
- /*
- * Determine the strip mine size and allocate a buffer. The strip mine is
- * a hyperslab whose size is manageable.
- */
- sm_nbytes = p_type_nbytes = H5Tget_size(p_type);
+ case 3:
+ {
+ if ((p_type = h5str_get_big_endian_type(f_type)) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ break;
+ }
+
+ default:
+ {
+ if ((p_type = H5Tcopy(f_type)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ break;
+ }
+ }
+ if ((f_space = H5Dget_space(dset)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) {
+ if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Calculate the number of elements we're going to print */
+ p_nelmts = 1;
+
+ if (ndims > 0) {
+ for (i = 0; i < (size_t) ndims; i++)
+ p_nelmts *= total_size[i];
+ } /* end if */
+
+ if (p_nelmts > 0) {
+ /* Check if we have VL data in the dataset's datatype */
+ if (h5str_detect_vlen(p_type) != 0)
+ vl_data = 1;
+
+ /*
+ * Determine the strip mine size and allocate a buffer. The strip mine is
+ * a hyperslab whose size is manageable.
+ */
+ if (!(sm_nbytes = p_type_nbytes = H5Tget_size(p_type)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (ndims > 0) {
+ for (i = (size_t)ndims; i > 0; --i) {
+ hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes;
+ if ( size == 0 ) /* datum size > H5TOOLS_BUFSIZE */
+ size = 1;
+ sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size));
+ sm_nbytes *= sm_size[i - 1];
+ }
+ }
+
+ if (sm_nbytes > 0) {
+ if (NULL == (sm_buf = (unsigned char *) HDmalloc((size_t)sm_nbytes)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf");
+
+ sm_nelmts = sm_nbytes / p_type_nbytes;
+
+ if ((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* The stripmine loop */
+ HDmemset(hs_offset, 0, sizeof hs_offset);
+ HDmemset(zero, 0, sizeof zero);
+
+ for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) {
+ /* Calculate the hyperslab size */
if (ndims > 0) {
- for (i = (size_t)ndims; i > 0; --i) {
- hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes;
- if ( size == 0) /* datum size > H5TOOLS_BUFSIZE */
- size = 1;
- sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size));
- sm_nbytes *= sm_size[i - 1];
+ for (i = 0, hs_nelmts = 1; i < (size_t) ndims; i++) {
+ hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) ? (total_size[i] - hs_offset[i]) : (sm_size[i]));
+ hs_nelmts *= hs_size[i];
}
+
+ if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
}
+ else {
+ if (H5Sselect_all(f_space) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if(sm_nbytes > 0) {
- sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes);
-
- sm_nelmts = sm_nbytes / p_type_nbytes;
- sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
-
- /* The stripmine loop */
- HDmemset(hs_offset, 0, sizeof hs_offset);
- HDmemset(zero, 0, sizeof zero);
-
- for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) {
- /* Calculate the hyperslab size */
- if (ndims > 0) {
- for (i = 0, hs_nelmts = 1; i < ndims; i++) {
- hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) ? (total_size[i] - hs_offset[i]) : (sm_size[i]));
- hs_nelmts *= hs_size[i];
- }
-
- H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL);
- H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL);
- }
- else {
- H5Sselect_all(f_space);
- H5Sselect_all(sm_space);
- hs_nelmts = 1;
- }
-
- /* Read the data */
- if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) >= 0) {
-
- if (binary_order == 99)
- ret_value = h5tools_dump_simple_data(stream, dset, p_type, sm_buf, hs_nelmts);
- else
- ret_value = h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts);
-
- /* Reclaim any VL memory, if necessary */
- if (vl_data)
- H5Dvlen_reclaim(p_type, sm_space, H5P_DEFAULT, sm_buf);
- }
- else {
- ret_value = -1;
- break;
- }
-
- if(ret_value < 0) break;
-
- /* Calculate the next hyperslab offset */
- for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) {
- hs_offset[i - 1] += hs_size[i - 1];
-
- if (hs_offset[i - 1] == total_size[i - 1])
- hs_offset[i - 1] = 0;
- else
- carry = 0;
- }
- }
+ if (H5Sselect_all(sm_space) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if(sm_buf)
- HDfree(sm_buf);
+ hs_nelmts = 1;
+ }
+
+ /* Read the data */
+ if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (binary_order == 99) {
+ if (h5tools_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+ else {
+ if (h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts) < 0)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+ /* Reclaim any VL memory, if necessary */
+ if (vl_data) {
+ if (H5Dvlen_reclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ }
+
+ /* Calculate the next hyperslab offset */
+ for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) {
+ hs_offset[i - 1] += hs_size[i - 1];
+
+ if (hs_offset[i - 1] == total_size[i - 1])
+ hs_offset[i - 1] = 0;
+ else
+ carry = 0;
}
- if(sm_space >= 0 && H5Sclose(sm_space) < 0)
- ret_value = -1;
}
}
- if(f_space >= 0 && H5Sclose(f_space) < 0)
- ret_value = -1;
- } /* end if((f_space = H5Dget_space(dset)) >= 0) */
- else
- ret_value = -1;
-
- if (p_type >= 0)
- H5Tclose(p_type);
+ }
}
+
+ ret_value = SUCCEED;
+
+done:
+ if (sm_space >= 0)
+ H5Sclose(sm_space);
+ if (sm_buf)
+ HDfree(sm_buf);
+ if (f_space >= 0)
+ H5Sclose(f_space);
+ if (p_type >= 0)
+ H5Tclose(p_type);
+ if (f_type >= 0)
+ H5Tclose(f_type);
+
return ret_value;
} /* end h5str_dump_simple_dset */
+htri_t
+H5Tdetect_variable_str(hid_t tid) {
+ htri_t ret_val = 0;
+
+ if (H5Tget_class(tid) == H5T_COMPOUND) {
+ unsigned i;
+ unsigned nm = (unsigned)H5Tget_nmembers(tid);
+ for(i = 0; i < nm; i++) {
+ htri_t status = 0;
+ hid_t mtid = 0;
+ if((mtid = H5Tget_member_type(tid, i)) < 0)
+ return FAIL; /* exit immediately on error */
+ if((status = H5Tdetect_variable_str(mtid)) < 0)
+ return status; /* exit immediately on error */
+ ret_val |= status;
+ H5Tclose (mtid);
+ } /* end for */
+ } /* end if */
+ else
+ ret_val = H5Tis_variable_str(tid);
+
+ return ret_val;
+} /* end H5Tdetect_variable_str */
+
static int
h5tools_dump_simple_data
- (FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts)
+ (JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts)
{
- int ret_value = 0;
- int line_count;
- unsigned char *mem = (unsigned char*)_mem;
- size_t size; /* datum size */
- hsize_t i; /*element counter */
- h5str_t buffer; /*string into which to render */
-
- if((size = H5Tget_size(type)) > 0) {
- for (i = 0, line_count = 0; i < nelmts; i++, line_count++) {
- size_t bytes_in = 0; /* # of bytes to write */
- size_t bytes_wrote = 0; /* # of bytes written */
- void* memref = mem + i * size;
-
- /* Render the data element*/
- h5str_new(&buffer, 32 * size);
- bytes_in = h5str_sprintf(&buffer, container, type, memref, 0, 1);
- if(i > 0) {
- HDfprintf(stream, ", ");
- if (line_count >= H5TOOLS_TEXT_BLOCK) {
- line_count = 0;
- HDfprintf(stream, "\n");
- }
+ unsigned char *mem = (unsigned char *)_mem;
+ h5str_t buffer; /* string into which to render */
+ hsize_t i; /* element counter */
+ size_t size; /* datum size */
+ int line_count;
+ int ret_value = 0;
+
+ if (!(size = H5Tget_size(type)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0, line_count = 0; i < nelmts; i++, line_count++) {
+ size_t bytes_in = 0; /* # of bytes to write */
+ void *memref = mem + i * size;
+
+ /* Render the data element*/
+ h5str_new(&buffer, 32 * size);
+
+ if (!buffer.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: failed to allocate buffer");
+
+ if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 0, 1)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (i > 0) {
+ if (HDfprintf(stream, ", ") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
+
+ if (line_count >= H5TOOLS_TEXT_BLOCK) {
+ line_count = 0;
+
+ if (HDfprintf(stream, "\n") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
}
- HDfprintf(stream, "%s", buffer.s);
- h5str_free(&buffer);
- } /* end for (i = 0; i < nelmts... */
- HDfprintf(stream, "\n");
- } /* end if((size = H5Tget_size(tid)) > 0) */
- else
- ret_value = -1;
+ }
+
+ if (HDfprintf(stream, "%s", buffer.s) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
+
+ h5str_free(&buffer);
+ } /* end for (i = 0; i < nelmts... */
+
+ if (HDfprintf(stream, "\n") < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
+
+done:
+ if (buffer.s)
+ h5str_free(&buffer);
return ret_value;
} /* end h5tools_dump_simple_data */
@@ -2421,53 +2905,68 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AreadComplex
(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = -1;
- int i;
- int n;
- char *rdata;
- size_t max_len = 0;
- size_t size;
- h5str_t h5str;
- hid_t p_type = -1;
- jstring jstr;
+ h5str_t h5str;
+ jstring jstr;
+ size_t size;
+ size_t i;
+ hid_t p_type = H5I_INVALID_HID;
+ jsize n;
+ char *readBuf = NULL;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ HDmemset(&h5str, 0, sizeof(h5str_t));
+
+ if ((p_type = H5Tget_native_type(mem_type_id, H5T_DIR_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- p_type = H5Tget_native_type(mem_type_id, H5T_DIR_DEFAULT);
size = (((H5Tget_size(mem_type_id))>(H5Tget_size(p_type))) ? (H5Tget_size(mem_type_id)) : (H5Tget_size(p_type)));
- H5Tclose(p_type);
- n = ENVPTR->GetArrayLength(ENVPAR buf);
- rdata = (char *)HDmalloc((size_t)n * size);
- if (rdata == NULL) {
- h5JNIFatalError(env, "H5AreadComplex: failed to allocate buff for read");
- } /* end if */
- else {
- status = H5Aread(attr_id, mem_type_id, rdata);
- if (status < 0) {
- h5JNIFatalError(env, "H5AreadComplex: failed to read data");
- } /* end if */
- else {
- HDmemset(&h5str, 0, sizeof(h5str_t));
- h5str_new(&h5str, 4 * size);
- if (h5str.s == NULL) {
- h5JNIFatalError(env, "H5AreadComplex: failed to allocate string buf");
- } /* end if */
- else {
- for (i = 0; i < n; i++) {
- h5str.s[0] = '\0';
- h5str_sprintf(&h5str, attr_id, mem_type_id, rdata + ((size_t)i * size), 0, 0);
- jstr = ENVPTR->NewStringUTF(ENVPAR h5str.s);
- ENVPTR->SetObjectArrayElement(ENVPAR buf, i, jstr);
- } /* end for */
- } /* end else */
- h5str_free(&h5str);
- } /* end else */
- HDfree(rdata);
- } /* end else */
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) <= 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadComplex: read buffer length <= 0");
+ }
+
+ if (NULL == (readBuf = (char *) HDmalloc((size_t)n * size)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadComplex: failed to allocate read buffer");
+
+ if ((status = H5Aread(attr_id, mem_type_id, readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ h5str_new(&h5str, 4 * size);
+
+ if (!h5str.s)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadComplex: failed to allocate string buffer");
+
+ for (i = 0; i < (size_t) n; i++) {
+ h5str.s[0] = '\0';
+
+ if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0, 0))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jstr);
+ } /* end for */
+
+done:
+ if (h5str.s)
+ h5str_free(&h5str);
+ if (readBuf)
+ HDfree(readBuf);
+ if (p_type >= 0)
+ H5Tclose(p_type);
+
return status;
}
/*
- * Copies the content of one dataset to another dataset
+ * Copies the content of one attribute to another attribute
* Class: hdf_hdf5lib_H5
* Method: H5Acopy
* Signature: (JJ)I
@@ -2476,62 +2975,51 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Acopy
(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id)
{
- jbyte *buf;
- herr_t retVal = -1;
- hid_t src_did = (hid_t)src_id;
- hid_t dst_did = (hid_t)dst_id;
- hid_t tid = -1;
- hid_t sid = -1;
- hsize_t total_size = 0;
-
-
- sid = H5Aget_space(src_did);
- if (sid < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- tid = H5Aget_type(src_did);
- if (tid < 0) {
- H5Sclose(sid);
- h5libraryError(env);
- } /* end if */
- else {
- total_size = (hsize_t)H5Sget_simple_extent_npoints(sid) * (hsize_t)H5Tget_size(tid);
+ hssize_t npoints;
+ hsize_t total_size = 0;
+ size_t type_size;
+ jbyte *buf = NULL;
+ hid_t tid = H5I_INVALID_HID;
+ hid_t sid = H5I_INVALID_HID;
+ herr_t retVal = FAIL;
- H5Sclose(sid);
+ UNUSED(clss);
- buf = (jbyte *)HDmalloc( (size_t)total_size * sizeof(jbyte));
- if (buf == NULL) {
- H5Tclose(tid);
- h5outOfMemory( env, "H5Acopy: malloc failed");
- } /* end if */
- else {
- retVal = H5Aread(src_did, tid, buf);
- H5Tclose(tid);
+ if ((sid = H5Aget_space((hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retVal < 0) {
- HDfree(buf);
- h5libraryError(env);
- } /* end if */
- else {
- tid = H5Aget_type(dst_did);
- if (tid < 0) {
- HDfree(buf);
- h5libraryError(env);
- } /* end if */
- else {
- retVal = H5Awrite(dst_did, tid, buf);
+ if ((tid = H5Aget_type((hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- H5Tclose(tid);
- HDfree(buf);
+ if ((npoints = H5Sget_simple_extent_npoints(sid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(type_size = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ total_size = (hsize_t)npoints * (hsize_t)type_size;
- if (retVal < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
- } /* end else */
+ if (NULL == (buf = (jbyte *) HDmalloc((size_t)total_size * sizeof(jbyte))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Acopy: failed to allocate buffer");
+
+ if ((retVal = H5Aread((hid_t)src_id, tid, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (H5Tclose(tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ tid = H5I_INVALID_HID;
+
+ if ((tid = H5Aget_type((hid_t)dst_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((retVal = H5Awrite((hid_t)dst_id, tid, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (buf)
+ HDfree(buf);
+ if (tid >= 0)
+ H5Tclose(tid);
+ if (sid >= 0)
+ H5Sclose(sid);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Acopy */
@@ -2546,64 +3034,54 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Dcopy
(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id)
{
- jbyte *buf;
- herr_t retVal = -1;
- hid_t src_did = (hid_t)src_id;
- hid_t dst_did = (hid_t)dst_id;
- hid_t tid = -1;
- hid_t sid = -1;
- hsize_t total_size = 0, total_allocated_size;
-
- total_allocated_size = H5Dget_storage_size(src_did);
- if (total_allocated_size <=0)
- return 0; // nothing to write;
-
- sid = H5Dget_space(src_did);
- if (sid < 0) {
- h5libraryError(env);
- return -1;
- } /* end if */
+ hssize_t npoints;
+ hsize_t total_size = 0, total_allocated_size;
+ size_t type_size;
+ jbyte *buf = NULL;
+ hid_t tid = H5I_INVALID_HID;
+ hid_t sid = H5I_INVALID_HID;
+ herr_t retVal = FAIL;
- tid = H5Dget_type(src_did);
- if (tid < 0) {
- H5Sclose(sid);
- h5libraryError(env);
- return -1;
- } /* end if */
+ UNUSED(clss);
- total_size = (hsize_t)H5Sget_simple_extent_npoints(sid) * (hsize_t)H5Tget_size(tid);
+ if (!(total_allocated_size = H5Dget_storage_size((hid_t)src_id)))
+ return 0; // nothing to write
- H5Sclose(sid);
+ if ((sid = H5Dget_space((hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- buf = (jbyte*)HDmalloc((size_t)total_size * sizeof(jbyte));
- if (buf == NULL) {
- H5Tclose(tid);
- h5outOfMemory(env, "H5Dcopy: malloc failed");
- return -1;
- } /* end if */
+ if ((tid = H5Dget_type((hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- retVal = H5Dread(src_did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
- H5Tclose(tid);
+ if ((npoints = H5Sget_simple_extent_npoints(sid)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(type_size = H5Tget_size(tid)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ total_size = (hsize_t)npoints * (hsize_t)type_size;
- if (retVal < 0) {
- HDfree(buf);
- h5libraryError(env);
- return (jint)retVal;
- } /* end if */
+ if (NULL == (buf = (jbyte *) HDmalloc((size_t)total_size * sizeof(jbyte))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Dcopy: failed to allocate buffer");
- tid = H5Dget_type(dst_did);
- if (tid < 0) {
- HDfree(buf);
- h5libraryError(env);
- return -1;
- } /* end if */
- retVal = H5Dwrite(dst_did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
- H5Tclose(tid);
- HDfree(buf);
+ if ((retVal = H5Dread((hid_t)src_id, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retVal < 0) {
- h5libraryError(env);
- } /* end if */
+ if (H5Tclose(tid) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ tid = H5I_INVALID_HID;
+
+ if ((tid = H5Dget_type((hid_t)dst_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if ((retVal = H5Dwrite((hid_t)dst_id, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (buf)
+ HDfree(buf);
+ if (tid >= 0)
+ H5Tclose(tid);
+ if (sid >= 0)
+ H5Sclose(sid);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Dcopy */
@@ -2613,7 +3091,7 @@ Java_hdf_hdf5lib_H5_H5Dcopy
//
//
// Add these methods so that we don't need to call H5Gget_objtype_by_idx
-// in a loop to get information for all the object in a group, which takes
+// in a loop to get information for all the objects in a group, which takes
// a lot of time to finish if the number of objects is more than 10,000
//
/////////////////////////////////////////////////////////////////////////////////
@@ -2648,152 +3126,103 @@ typedef struct info_all
* Method: H5Gget_obj_info_full
* Signature: (JLjava/lang/String;[Ljava/lang/String;[I[I[J[JIII)I
*/
+/*
+ * NOTE: This is a dangerous call! The caller can supply any value they'd like
+ * for 'n' and if it exceeds the number of links in the group, we will most likely
+ * end up overwriting memory heap-tracking info.
+ */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full
(JNIEnv *env, jclass clss, jlong loc_id, jstring group_name,
jobjectArray objName, jintArray oType, jintArray lType, jlongArray fNo,
jlongArray oRef, jint n, jint indx_type, jint indx_order)
{
- herr_t ret_val = -1;
- const char *gName = NULL;
- char **oName = NULL;
- jboolean isCopy;
- jstring str;
- jint *otarr;
- jint *ltarr;
- jlong *refP;
- jlong *fnoP;
- unsigned long *refs=NULL;
- unsigned long *fnos=NULL;
- hid_t gid = (hid_t)loc_id;
- int i;
- int indexType = indx_type;
- int indexOrder = indx_order;
-
- if (oType == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_full: oType is NULL");
- }
- else if (lType == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_full: lType is NULL");
- }
- else if (oRef == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_full: oRef is NULL");
+ unsigned long *refs = NULL;
+ unsigned long *fnos = NULL;
+ const char *gName = NULL;
+ char **oName = NULL;
+ jboolean isCopy;
+ jstring str;
+ jint *otarr = NULL;
+ jint *ltarr = NULL;
+ jlong *refP = NULL;
+ jlong *fnoP = NULL;
+ hid_t gid = (hid_t)loc_id;
+ int i;
+ int indexType = indx_type;
+ int indexOrder = indx_order;
+ herr_t ret_val = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == oType)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oType is NULL");
+ if (NULL == lType)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: lType is NULL");
+ if (NULL == oRef)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oRef is NULL");
+ if (NULL == fNo)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: fNo is NULL");
+
+ PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_full: oType not pinned");
+ PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_full: lType not pinned");
+ PIN_LONG_ARRAY(ENVONLY, oRef, refP, &isCopy, "H5Gget_obj_info_full: oRef not pinned");
+ PIN_LONG_ARRAY(ENVONLY, fNo, fnoP, &isCopy, "H5Gget_obj_info_full: fNo not pinned");
+
+ if (NULL == (oName = (char **) HDcalloc((size_t)n, sizeof(*oName))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object name");
+
+ if (NULL == (refs = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for ref. info");
+
+ if (NULL == (fnos = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for file number info");
+
+ if (group_name) {
+ PIN_JAVA_STRING(ENVONLY, group_name, gName, &isCopy, "H5Gget_obj_info_full: group_name not pinned");
+
+ if ((gid = H5Gopen2((hid_t)loc_id, gName, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
}
- else if (fNo == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_full: fNo is NULL");
- }
- else {
- otarr = ENVPTR->GetIntArrayElements(ENVPAR oType, &isCopy);
- if (otarr == NULL) {
- h5JNIFatalError(env, "H5Gget_obj_info_full: otype not pinned");
- return -1;
- } /* end if */
- ltarr = ENVPTR->GetIntArrayElements(ENVPAR lType, &isCopy);
- if (ltarr == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_full: ltype not pinned");
- return -1;
- } /* end if */
- refP = ENVPTR->GetLongArrayElements(ENVPAR oRef, &isCopy);
- if (refP == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_full: oRef not pinned");
- return -1;
- } /* end if */
- fnoP = ENVPTR->GetLongArrayElements(ENVPAR fNo, &isCopy);
- if (fnoP == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_full: fNo not pinned");
- return -1;
- } /* end if */
- oName = (char **)HDcalloc((size_t)n, sizeof(*oName));
- if (!oName) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_full: oName not allocated");
- return -1;
- } /* end if */
- refs = (unsigned long *)HDcalloc((size_t)n, sizeof(unsigned long));
- fnos = (unsigned long *)HDcalloc((size_t)n, sizeof(unsigned long));
- if (!refs || !fnos) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- if (refs)
- HDfree(refs);
- if (fnos)
- HDfree(fnos);
- h5JNIFatalError(env, "H5Gget_obj_info_full: result arrays not allocated");
- return -1;
- } /* end if */
-
- if (group_name != NULL) {
- gid = -1;
- gName = ENVPTR->GetStringUTFChars(ENVPAR group_name, &isCopy);
- if (gName != NULL) {
- gid = H5Gopen2((hid_t)loc_id, gName, H5P_DEFAULT);
-
- ENVPTR->ReleaseStringUTFChars(ENVPAR group_name, gName);
- } /* end if */
- if(gid < 0) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- HDfree(refs);
- HDfree(fnos);
- h5JNIFatalError(env, "H5Gget_obj_info_full: could not get group identifier");
- return -1;
- } /* end if */
- } /* end if */
+ if ((ret_val = H5Gget_obj_info_full(gid, oName, (int *)otarr, (int *)ltarr, fnos, refs, indexType, indexOrder)) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: retrieval of object info failed");
- ret_val = H5Gget_obj_info_full(gid, oName, (int *)otarr, (int *)ltarr, fnos, refs, indexType, indexOrder);
+ for (i = 0; i < n; i++) {
+ refP[i] = (jlong)refs[i];
+ fnoP[i] = (jlong)fnos[i];
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, 0);
+ if (oName[i]) {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, oName[i])))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (group_name != NULL)
- H5Gclose(gid);
+ ENVPTR->SetObjectArrayElement(ENVONLY, objName, i, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (ret_val < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- HDfree(refs);
- HDfree(fnos);
- h5libraryError(env);
+ ENVPTR->DeleteLocalRef(ENVONLY, str);
} /* end if */
- else {
- for (i=0; i<n; i++) {
- refP[i] = (jlong)refs[i];
- } /* end for */
- HDfree(refs);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, 0);
-
- for (i=0; i<n; i++) {
- fnoP[i] = (jlong)fnos[i];
- } /* end for */
- HDfree(fnos);
- ENVPTR->ReleaseLongArrayElements(ENVPAR fNo, fnoP, 0);
-
- for (i=0; i<n; i++) {
- if (*(oName+i)) {
- str = ENVPTR->NewStringUTF(ENVPAR *(oName+i));
- ENVPTR->SetObjectArrayElement(ENVPAR objName, i, (jobject)str);
- } /* end if */
- } /* for (i=0; i<n; i++)*/
- h5str_array_free(oName, (size_t)n);
- } /* end else */
- } /* end else */
+ }
+
+done:
+ if (gName) {
+ H5Gclose(gid);
+ UNPIN_JAVA_STRING(ENVONLY, group_name, gName);
+ }
+ if (fnos)
+ HDfree(fnos);
+ if (refs)
+ HDfree(refs);
+ if (oName)
+ h5str_array_free(oName, (size_t)n);
+ if (fnoP)
+ UNPIN_LONG_ARRAY(ENVONLY, fNo, fnoP, (ret_val < 0) ? JNI_ABORT : 0);
+ if (refP)
+ UNPIN_LONG_ARRAY(ENVONLY, oRef, refP, (ret_val < 0) ? JNI_ABORT : 0);
+ if (ltarr)
+ UNPIN_INT_ARRAY(ENVONLY, lType, ltarr, (ret_val < 0) ? JNI_ABORT : 0);
+ if (otarr)
+ UNPIN_INT_ARRAY(ENVONLY, oType, otarr, (ret_val < 0) ? JNI_ABORT : 0);
+
return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full */
@@ -2802,97 +3231,73 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full
* Method: H5Gget_obj_info_max
* Signature: (J[Ljava/lang/String;[I[I[JJI)I
*/
+/*
+ * NOTE: This is a dangerous call! The caller can supply any value they'd like
+ * for 'n' and if it exceeds the number of links reachable from the group, we
+ * will most likely end up overwriting memory heap-tracking info.
+ */
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max
(JNIEnv *env, jclass clss, jlong loc_id, jobjectArray objName,
jintArray oType, jintArray lType, jlongArray oRef, jlong maxnum, jint n)
{
- herr_t ret_val = -1;
- char **oName=NULL;
- jboolean isCopy;
- jstring str;
- jint *otarr;
- jint *ltarr;
- jlong *refP;
- unsigned long *refs;
- int i;
-
- if (oType == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_max: oType is NULL");
- } /* end if */
- else if (lType == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_max: lType is NULL");
- } /* end else if */
- else if (oRef == NULL) {
- h5nullArgument(env, "H5Gget_obj_info_max: oRef is NULL");
- } /* end else if */
- else {
- otarr = ENVPTR->GetIntArrayElements(ENVPAR oType, &isCopy);
- if (otarr == NULL) {
- h5JNIFatalError(env, "H5Gget_obj_info_max: otype not pinned");
- return -1;
- } /* end if */
+ unsigned long *refs = NULL;
+ jboolean isCopy;
+ jstring str;
+ jlong *refP = NULL;
+ char **oName = NULL;
+ jint *otarr = NULL;
+ jint *ltarr = NULL;
+ int i;
+ herr_t ret_val = FAIL;
- ltarr = ENVPTR->GetIntArrayElements(ENVPAR lType, &isCopy);
- if (ltarr == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_max: ltype not pinned");
- return -1;
- } /* end if */
+ UNUSED(clss);
- refP = ENVPTR->GetLongArrayElements(ENVPAR oRef, &isCopy);
- if (refP == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_max: oRef not pinned");
- return -1;
- } /* end if */
+ if (NULL == oType)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oType is NULL");
+ if (NULL == lType)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: lType is NULL");
+ if (NULL == oRef)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oRef is NULL");
- oName = (char **)HDcalloc((size_t)n, sizeof(*oName));
- if (!oName) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- h5JNIFatalError(env, "H5Gget_obj_info_max: oName not allocated");
- return -1;
- } /* end if */
- refs = (unsigned long *)HDcalloc((size_t)n, sizeof(unsigned long));
- if (!refs) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, JNI_ABORT);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, JNI_ABORT);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- h5JNIFatalError(env, "H5Gget_obj_info_max: result array not allocated");
- return -1;
- } /* end if */
+ PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_max: oType not pinned");
+ PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_max: lType not pinned");
+ PIN_LONG_ARRAY(ENVONLY, oRef, refP, &isCopy, "H5Gget_obj_info_max: oRef not pinned");
- ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int*)otarr, (int*)ltarr, refs, maxnum );
- ENVPTR->ReleaseIntArrayElements(ENVPAR lType, ltarr, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR oType, otarr, 0);
+ if (NULL == (oName = (char **) HDcalloc((size_t)n, sizeof(*oName))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object name");
- if (ret_val < 0) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, JNI_ABORT);
- h5str_array_free(oName, (size_t)n);
- HDfree(refs);
- h5libraryError(env);
- } /* end if */
- else {
- for (i=0; i<n; i++) {
- refP[i] = (jlong) refs[i];
- } /* end for */
- HDfree(refs);
- ENVPTR->ReleaseLongArrayElements(ENVPAR oRef, refP, 0);
-
- for (i=0; i<n; i++) {
- if (*(oName+i)) {
- str = ENVPTR->NewStringUTF(ENVPAR *(oName+i));
- ENVPTR->SetObjectArrayElement(ENVPAR objName, i, (jobject)str);
- }
- } /* for (i=0; i<n; i++)*/
+ if (NULL == (refs = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long))))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for ref. info");
- h5str_array_free(oName, (size_t)n);
- } /* end else */
- } /* end else */
+ if ((ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int *)otarr, (int *)ltarr, refs, maxnum)) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: retrieval of object info failed");
+
+ for (i = 0; i < n; i++) {
+ refP[i] = (jlong) refs[i];
+
+ if (oName[i]) {
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, oName[i])))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->SetObjectArrayElement(ENVONLY, objName, i, (jobject)str);
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, str);
+ }
+ } /* end for */
+
+done:
+ if (refs)
+ HDfree(refs);
+ if (oName)
+ h5str_array_free(oName, (size_t)n);
+ if (refP)
+ UNPIN_LONG_ARRAY(ENVONLY, oRef, refP, (ret_val < 0) ? JNI_ABORT : 0);
+ if (ltarr)
+ UNPIN_INT_ARRAY(ENVONLY, lType, ltarr, (ret_val < 0) ? JNI_ABORT : 0);
+ if (otarr)
+ UNPIN_INT_ARRAY(ENVONLY, oType, otarr, (ret_val < 0) ? JNI_ABORT : 0);
return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max */
@@ -2902,6 +3307,7 @@ H5Gget_obj_info_full
(hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, unsigned long *objno, int indexType, int indexOrder)
{
info_all_t info;
+
info.objname = objname;
info.otype = otype;
info.ltype = ltype;
@@ -2910,11 +3316,22 @@ H5Gget_obj_info_full
info.objno = objno;
info.count = 0;
- if(H5Literate(loc_id, (H5_index_t)indexType, (H5_iter_order_t)indexOrder, NULL, obj_info_all, (void *)&info) < 0) {
- /* iterate failed, try normal alphabetical order */
- if(H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, obj_info_all, (void *)&info) < 0)
+ if (H5Literate(loc_id, (H5_index_t)indexType, (H5_iter_order_t)indexOrder, NULL, obj_info_all, (void *)&info) < 0) {
+ /*
+ * Reset info stats; most importantly, reset the count.
+ */
+ info.objname = objname;
+ info.otype = otype;
+ info.ltype = ltype;
+ info.idxnum = 0;
+ info.fno = fno;
+ info.objno = objno;
+ info.count = 0;
+
+ /* Iteration failed, try normal alphabetical order */
+ if (H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, obj_info_all, (void *)&info) < 0)
return -1;
- } /* end if */
+ }
return info.count;
} /* end H5Gget_obj_info_full */
@@ -2924,6 +3341,7 @@ H5Gget_obj_info_max
(hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *objno, long maxnum)
{
info_all_t info;
+
info.objname = objname;
info.otype = otype;
info.ltype = ltype;
@@ -2931,7 +3349,7 @@ H5Gget_obj_info_max
info.objno = objno;
info.count = 0;
- if(H5Lvisit(loc_id, H5_INDEX_NAME, H5_ITER_NATIVE, obj_info_max, (void *)&info) < 0)
+ if (H5Lvisit(loc_id, H5_INDEX_NAME, H5_ITER_NATIVE, obj_info_max, (void *)&info) < 0)
return -1;
return info.count;
@@ -2941,75 +3359,87 @@ herr_t
obj_info_all
(hid_t loc_id, const char *name, const H5L_info_t *info, void *op_data)
{
- int type = -1;
- hid_t oid = -1;
- herr_t retVal = -1;
- info_all_t *datainfo = (info_all_t*)op_data;
+ info_all_t *datainfo = (info_all_t *)op_data;
H5O_info_t object_info;
+ htri_t object_exists;
+ size_t str_len;
- retVal = H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT);
+ datainfo->otype[datainfo->count] = -1;
+ datainfo->ltype[datainfo->count] = -1;
+ datainfo->objno[datainfo->count] = (unsigned long)-1;
- if (retVal < 0) {
- *(datainfo->otype+datainfo->count) = -1;
- *(datainfo->ltype+datainfo->count) = -1;
- *(datainfo->objname+datainfo->count) = (char *)HDmalloc(HDstrlen(name)+1);
- HDstrcpy(*(datainfo->objname+datainfo->count), name);
- *(datainfo->objno+datainfo->count) = (unsigned long)-1;
- } /* end if */
- else {
- *(datainfo->otype+datainfo->count) = object_info.type;
- *(datainfo->ltype+datainfo->count) = info->type;
- *(datainfo->objname+datainfo->count) = (char *)HDmalloc(HDstrlen(name)+1);
- HDstrcpy(*(datainfo->objname+datainfo->count), name);
-
- *(datainfo->fno+datainfo->count) = object_info.fileno;
- *(datainfo->objno+datainfo->count) = (unsigned long)object_info.addr;
- /*
- if(info->type==H5L_TYPE_HARD)
- *(datainfo->objno+datainfo->count) = (unsigned long)info->u.address;
- else
- *(datainfo->objno+datainfo->count) = info->u.val_size;
- */
- } /* end else */
+ str_len = HDstrlen(name);
+ if (NULL == (datainfo->objname[datainfo->count] = (char *) HDmalloc(str_len + 1)))
+ goto done;
+
+ HDstrncpy(datainfo->objname[datainfo->count], name, str_len);
+ (datainfo->objname[datainfo->count])[str_len] = '\0';
+
+ if ((object_exists = H5Oexists_by_name(loc_id, name, H5P_DEFAULT)) < 0)
+ goto done;
+
+ if (object_exists) {
+ if (H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT) < 0)
+ goto done;
+ datainfo->otype[datainfo->count] = object_info.type;
+ datainfo->ltype[datainfo->count] = info->type;
+ datainfo->fno[datainfo->count] = object_info.fileno;
+ datainfo->objno[datainfo->count] = (unsigned long)object_info.addr;
+ }
+
+ /*
+ if (info->type == H5L_TYPE_HARD)
+ datainfo->objno[datainfo->count] = (unsigned long)info->u.address;
+ else
+ datainfo->objno[datainfo->count] = info->u.val_size;
+ */
+
+done:
datainfo->count++;
- return 0;
+ return SUCCEED;
} /* end obj_info_all */
herr_t
obj_info_max
(hid_t loc_id, const char *name, const H5L_info_t *info, void *op_data)
{
- int type = -1;
- herr_t retVal = 0;
- info_all_t *datainfo = (info_all_t*)op_data;
+ info_all_t *datainfo = (info_all_t *)op_data;
H5O_info_t object_info;
+ size_t str_len;
- retVal = H5Oget_info2(loc_id, &object_info, H5O_INFO_ALL);
- if (retVal < 0) {
- *(datainfo->otype+datainfo->count) = -1;
- *(datainfo->ltype+datainfo->count) = -1;
- *(datainfo->objname+datainfo->count) = NULL;
- *(datainfo->objno+datainfo->count) = (unsigned long)-1;
- return 1;
- } /* end if */
- else {
- *(datainfo->otype+datainfo->count) = object_info.type;
- *(datainfo->ltype+datainfo->count) = info->type;
- /* this will be freed by h5str_array_free(oName, n)*/
- *(datainfo->objname+datainfo->count) = (char *)HDmalloc(HDstrlen(name)+1);
- strcpy(*(datainfo->objname+datainfo->count), name);
- if(info->type==H5L_TYPE_HARD)
- *(datainfo->objno+datainfo->count) = (unsigned long)info->u.address;
- else
- *(datainfo->objno+datainfo->count) = info->u.val_size;
- } /* end else */
- datainfo->count++;
- if(datainfo->count < (int)datainfo->idxnum)
- return 0;
+ datainfo->otype[datainfo->count] = -1;
+ datainfo->ltype[datainfo->count] = -1;
+ datainfo->objname[datainfo->count] = NULL;
+ datainfo->objno[datainfo->count] = (unsigned long)-1;
+
+ /* This will be freed by h5str_array_free(oName, n) */
+ str_len = HDstrlen(name);
+ if (NULL == (datainfo->objname[datainfo->count] = (char *) HDmalloc(str_len + 1)))
+ goto done;
+
+ HDstrncpy(datainfo->objname[datainfo->count], name, str_len);
+ (datainfo->objname[datainfo->count])[str_len] = '\0';
+
+ if (H5Oget_info2(loc_id, &object_info, H5O_INFO_ALL) < 0)
+ goto done;
+
+ datainfo->otype[datainfo->count] = object_info.type;
+ datainfo->ltype[datainfo->count] = info->type;
+
+ if (info->type == H5L_TYPE_HARD)
+ datainfo->objno[datainfo->count] = (unsigned long)info->u.address;
else
+ datainfo->objno[datainfo->count] = info->u.val_size;
+
+done:
+ datainfo->count++;
+
+ if (datainfo->count >= (int)datainfo->idxnum)
return 1;
+ else
+ return SUCCEED;
} /* end obj_info_max */
/*
@@ -3021,68 +3451,62 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5export_1dataset
(JNIEnv *env, jclass cls, jstring file_export_name, jstring file_name, jstring object_path, jint binary_order)
{
- herr_t status = -1;
- herr_t ret_val = -1;
- hid_t file_id = -1;
- hid_t dataset_id = -1;
+ const char *file_export = NULL;
+ const char *object_name = NULL;
+ const char *fileName = NULL;
+ jboolean isCopy;
+ herr_t ret_val = FAIL;
+ hid_t file_id = H5I_INVALID_HID;
+ hid_t dataset_id = H5I_INVALID_HID;
FILE *stream;
- const char *file_export;
- const char *object_name;
- const char *fileName;
- jboolean isCopy2;
- if (file_export_name == NULL) {
- h5nullArgument(env, "HDF5Library_export_data: file_export_name is NULL");
- } /* end if */
- else if (object_path == NULL) {
- h5nullArgument(env, "HDF5Library_export_data: object_path is NULL");
- } /* end else if */
- else {
- PIN_JAVA_STRING(file_name, fileName);
- if (fileName != NULL) {
- file_id = H5Fopen(fileName, (unsigned)H5F_ACC_RDWR, (hid_t)H5P_DEFAULT);
-
- UNPIN_JAVA_STRING(file_name, fileName);
-
- if (file_id < 0) {
- /* throw exception */
- h5libraryError(env);
- } /* end if */
- else {
- object_name = ENVPTR->GetStringUTFChars(ENVPAR object_path, &isCopy2);
- if (object_name == NULL) {
- h5JNIFatalError( env, "H5Dopen: object name not pinned");
- } /* end if */
- else {
- dataset_id = H5Dopen2(file_id, object_name, H5P_DEFAULT);
+ UNUSED(cls);
- ENVPTR->ReleaseStringUTFChars(ENVPAR object_path, object_name);
+ if (NULL == file_export_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_export_name is NULL");
- if (dataset_id < 0) {
- H5Fclose(file_id);
- h5libraryError(env);
- } /* end if */
- else {
- file_export = ENVPTR->GetStringUTFChars(ENVPAR file_export_name, 0);
- stream = HDfopen(file_export, "w+");
- ENVPTR->ReleaseStringUTFChars(ENVPAR file_export_name, file_export);
+ if (NULL == file_name)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_name is NULL");
- ret_val = h5str_dump_simple_dset(stream, dataset_id, binary_order);
+ if (NULL == object_path)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: object_path is NULL");
- if (stream)
- HDfclose(stream);
+ PIN_JAVA_STRING(ENVONLY, file_name, fileName, NULL, "H5export_dataset: file name not pinned");
- H5Dclose(dataset_id);
+ if ((file_id = H5Fopen(fileName, (unsigned)H5F_ACC_RDWR, (hid_t)H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- H5Fclose(file_id);
+ PIN_JAVA_STRING(ENVONLY, object_path, object_name, &isCopy, "H5export_dataset: object_path not pinned");
- if (ret_val < 0)
- h5libraryError(env);
- } /* end else */
- } /* end else */
- } /* end else */
- }
- } /* end else */
+ if ((dataset_id = H5Dopen2(file_id, object_name, H5P_DEFAULT)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ PIN_JAVA_STRING(ENVONLY, file_export_name, file_export, NULL, "H5export_dataset: file_export name not pinned");
+
+ if (NULL == (stream = HDfopen(file_export, "w+")))
+ H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed");
+
+ if ((ret_val = h5str_dump_simple_dset(ENVONLY, stream, dataset_id, binary_order)) < 0)
+ H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset failed");
+
+ if (stream) {
+ HDfclose(stream);
+ stream = NULL;
+ }
+
+done:
+ if (stream)
+ HDfclose(stream);
+ if (file_export)
+ UNPIN_JAVA_STRING(ENVONLY, file_export_name, file_export);
+ if (object_name)
+ UNPIN_JAVA_STRING(ENVONLY, object_path, object_name);
+ if (fileName)
+ UNPIN_JAVA_STRING(ENVONLY, file_name, fileName);
+ if (dataset_id >= 0)
+ H5Dclose(dataset_id);
+ if (file_id >= 0)
+ H5Fclose(file_id);
} /* end Java_hdf_hdf5lib_H5_H5export_1dataset */
#ifdef __cplusplus
diff --git a/java/src/jni/h5util.h b/java/src/jni/h5util.h
index 23bc424..e5f0d0b 100644
--- a/java/src/jni/h5util.h
+++ b/java/src/jni/h5util.h
@@ -35,18 +35,29 @@ typedef struct h5str_t {
size_t max; /* the allocated size of the string */
} h5str_t;
-extern void h5str_new (h5str_t *str, size_t len);
-extern void h5str_free (h5str_t *str);
-extern void h5str_resize (h5str_t *str, size_t new_len);
-extern char* h5str_append (h5str_t *str, const char* cstr);
-extern size_t h5str_vlsprintf(h5str_t *str, hid_t container, hid_t tid, hvl_t *buf, int expand_data);
-extern size_t h5str_sprintf(h5str_t *str, hid_t container, hid_t tid, void *buf, int ptrlen, int expand_data);
-extern size_t h5str_vlsconvert(char *str, hid_t container, hid_t tid, hvl_t *buf, int expand_data);
-extern size_t h5str_convert(char **str, hid_t container, hid_t tid, hvl_t *buf, int ptroffset, int expand_data);
+extern void h5str_new(h5str_t *str, size_t len);
+extern void h5str_free(h5str_t *str);
+extern void h5str_resize(h5str_t *str, size_t new_len);
+extern char* h5str_append(h5str_t *str, const char* cstr);
+extern size_t h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset);
+extern size_t h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, int expand_data);
extern void h5str_array_free(char **strs, size_t len);
-extern int h5str_dump_simple_dset(FILE *stream, hid_t dset, int binary_order);
-extern int h5str_dump_region_blocks_data(h5str_t *str, hid_t region, hid_t region_obj);
-extern int h5str_dump_region_points_data(h5str_t *str, hid_t region, hid_t region_obj);
+extern int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order);
+extern int h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
+extern int h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
+
+extern htri_t H5Tdetect_variable_str(hid_t tid);
+
+/*
+ * Symbols used to format the output of h5str_sprintf and
+ * to interpret the input to h5str_convert.
+ */
+#define H5_COMPOUND_BEGIN_INDICATOR "{"
+#define H5_COMPOUND_END_INDICATOR "}"
+#define H5_ARRAY_BEGIN_INDICATOR "["
+#define H5_ARRAY_END_INDICATOR "]"
+#define H5_VLEN_BEGIN_INDICATOR "("
+#define H5_VLEN_END_INDICATOR ")"
/*
* Class: hdf_hdf5lib_H5
diff --git a/java/src/jni/h5vlImp.c b/java/src/jni/h5vlImp.c
index 89ea703..c816abf 100644
--- a/java/src/jni/h5vlImp.c
+++ b/java/src/jni/h5vlImp.c
@@ -21,9 +21,9 @@
extern "C" {
#endif /* __cplusplus */
-#include "hdf5.h"
#include <jni.h>
#include <stdlib.h>
+#include "hdf5.h"
#include "h5jni.h"
#include "h5vlImp.h"
@@ -36,18 +36,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name
(JNIEnv *env, jclass clss, jobject connector_name, jlong vipl_id)
{
- hid_t status = -1;
- const char *vlName;
+ const char *volName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(connector_name, vlName);
- if (vlName != NULL) {
- status = H5VLregister_connector_by_name(vlName, (hid_t)vipl_id);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(connector_name, vlName);
+ PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLregister_connector_by_name: VOL connector name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5VLregister_connector_by_name(volName, (hid_t)vipl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (volName)
+ UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name */
@@ -61,11 +62,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value
(JNIEnv *env, jclass clss, jint connector_value, jlong vipl_id)
{
- hid_t status = H5VLregister_connector_by_value((H5VL_class_value_t)connector_value, (hid_t)vipl_id);
+ hid_t status = H5I_INVALID_HID;
+
+ UNUSED(clss);
- if (status < 0)
- h5libraryError(env);
+ if ((status = H5VLregister_connector_by_value((H5VL_class_value_t)connector_value, (hid_t)vipl_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value */
@@ -78,20 +82,21 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered
(JNIEnv *env, jclass clss, jobject connector_name)
{
+ const char *volName = NULL;
htri_t bval = JNI_FALSE;
- const char *vlName;
- PIN_JAVA_STRING(connector_name, vlName);
- if (vlName != NULL) {
- bval = H5VLis_connector_registered(vlName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(connector_name, vlName);
+ PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLis_connector_registered: VOL connector name not pinned");
- if (bval > 0)
- bval = JNI_TRUE;
- else if (bval < 0)
- h5libraryError(env);
- }
+ if ((bval = H5VLis_connector_registered(volName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ if (volName)
+ UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered */
@@ -105,18 +110,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLget_1connector_1id
(JNIEnv *env, jclass clss, jobject connector_name)
{
- hid_t status = -1;
- const char *vlName;
+ const char *volName = NULL;
+ hid_t status = H5I_INVALID_HID;
- PIN_JAVA_STRING(connector_name, vlName);
- if (vlName != NULL) {
- status = H5VLget_connector_id(vlName);
+ UNUSED(clss);
- UNPIN_JAVA_STRING(connector_name, vlName);
+ PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLget_connector_id: VOL connector name not pinned");
- if (status < 0)
- h5libraryError(env);
- }
+ if ((status = H5VLget_connector_id(volName)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (volName)
+ UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id */
@@ -131,41 +137,31 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5VLget_1connector_1name
(JNIEnv *env, jclass clss, jlong object_id)
{
- char *vlName;
- ssize_t buf_size;
- ssize_t status;
+ ssize_t buf_size, status;
+ char *volName = NULL;
jstring str = NULL;
- /* get the length of the comment */
- buf_size = H5VLget_connector_name((hid_t)object_id, NULL, 0);
- if (buf_size < 0) {
- H5Eprint2(H5E_DEFAULT, NULL);
-
- h5badArgument(env, "H5VLget_connector_name: buf_size < 0");
- } /* end if */
- else if (buf_size > 0) {
- buf_size++; /* add extra space for the null terminator */
- vlName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
- if (vlName == NULL) {
- /* exception -- out of memory */
- h5outOfMemory(env, "H5VLget_connector_name: malloc failed");
- } /* end if */
- else {
- status = H5VLget_connector_name((hid_t)object_id, vlName, (size_t)buf_size);
-
- if (status < 0) {
- h5libraryError(env);
- } /* end if */
- else {
- /* may throw OutOfMemoryError */
- str = ENVPTR->NewStringUTF(ENVPAR vlName);
- if (str == NULL) {
- h5JNIFatalError(env, "H5VLget_connector_name: return string not allocated");
- } /* end if */
- } /* end else */
- HDfree(vlName);
- }
- } /* end else if */
+ UNUSED(clss);
+
+ /* Get the length of the comment */
+ if ((buf_size = H5VLget_connector_name((hid_t)object_id, NULL, 0)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (buf_size > 0) {
+ if (NULL == (volName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
+ H5_JNI_FATAL_ERROR(ENVONLY, "H5VLget_connector_name: failed to allocated VOL connector name buffer");
+
+ if ((status = H5VLget_connector_name((hid_t)object_id, volName, (size_t)buf_size + 1)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ volName[buf_size] = '\0';
+
+ if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, volName)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ }
+
+done:
+ if (volName)
+ HDfree(volName);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1name */
@@ -179,10 +175,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5VLclose
(JNIEnv *env, jclass clss, jlong connector_id)
{
- herr_t retValue = H5VLclose((hid_t)connector_id);
+ herr_t retValue = FAIL;
+
+ UNUSED(clss);
+
+ if ((retValue = H5VLclose((hid_t)connector_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retValue < 0)
- h5libraryError(env);
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5VLclose */
/*
@@ -194,10 +195,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5VLunregister_1connector
(JNIEnv *env, jclass clss, jlong connector_id)
{
- herr_t retValue = H5VLunregister_connector((hid_t)connector_id);
+ herr_t retValue = FAIL;
+
+ UNUSED(clss);
+
+ if ((retValue = H5VLunregister_connector((hid_t)connector_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- if (retValue < 0)
- h5libraryError(env);
+done:
+ return;
} /* end Java_hdf_hdf5lib_H5_H5VLunregister_1connector */
diff --git a/java/src/jni/h5vlImp.h b/java/src/jni/h5vlImp.h
index af824a9..207efa5 100644
--- a/java/src/jni/h5vlImp.h
+++ b/java/src/jni/h5vlImp.h
@@ -44,7 +44,7 @@ Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value
* Signature: (Ljava/lang/String;)Z
*/
JNIEXPORT jboolean JNICALL
-Java_hdf_hdf5lib_H5_H5VLis_connector_registered
+Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered
(JNIEnv *, jclass, jobject);
/*
diff --git a/java/src/jni/h5zImp.c b/java/src/jni/h5zImp.c
index a5e6cd8..a1c8517 100644
--- a/java/src/jni/h5zImp.c
+++ b/java/src/jni/h5zImp.c
@@ -36,12 +36,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Zunregister
(JNIEnv *env, jclass clss, jint filter)
{
- herr_t retValue = H5Zunregister((H5Z_filter_t)filter);
+ herr_t retVal = FAIL;
- if (retValue < 0)
- h5libraryError(env);
+ UNUSED(clss);
- return (jint)retValue;
+ if ((retVal = H5Zunregister((H5Z_filter_t)filter)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Zunregister */
/*
@@ -53,12 +56,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Zfilter_1avail
(JNIEnv *env, jclass clss, jint filter)
{
- herr_t retValue = H5Zfilter_avail((H5Z_filter_t)filter);
+ herr_t retVal = FAIL;
+
+ UNUSED(clss);
- if (retValue < 0)
- h5libraryError(env);
+ if ((retVal = H5Zfilter_avail((H5Z_filter_t)filter)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
- return (jint)retValue;
+done:
+ return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Zfilter_1avail */
/*
@@ -73,9 +79,12 @@ Java_hdf_hdf5lib_H5_H5Zget_1filter_1info
{
unsigned int flags = 0;
- if (H5Zget_filter_info ((H5Z_filter_t) filter, (unsigned *) &flags) < 0)
- h5libraryError(env);
+ UNUSED(clss);
+
+ if (H5Zget_filter_info((H5Z_filter_t) filter, (unsigned *) &flags) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+done:
return (jint)flags;
} /* end Java_hdf_hdf5lib_H5_H5Zget_1filter_1info */
diff --git a/java/src/jni/nativeData.c b/java/src/jni/nativeData.c
index 33f4953..947f843 100644
--- a/java/src/jni/nativeData.c
+++ b/java/src/jni/nativeData.c
@@ -50,54 +50,49 @@ JNIEXPORT jintArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jintArray rarray = NULL;
- int blen;
- jint *iarray;
- jboolean bb;
- char *bp;
- jint *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToInt: bdata is NULL?");
- } /* end if */
- else {
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToInt: pin failed");
- } /* end if */
- else {
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jint);
- rarray = ENVPTR->NewIntArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToInt" );
- return NULL;
- } /* end if */
-
- iarray = ENVPTR->GetIntArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToInt: pin iarray failed");
- return NULL;
- } /* end if */
-
- bp = (char *)barr;
- iap = iarray;
- for (ii = 0; ii < len; ii++) {
- *iap = *(jint *)bp;
- iap++;
- bp += sizeof(jint);
- } /* end for */
-
- ENVPTR->ReleaseIntArrayElements(ENVPAR rarray,iarray, 0);
- } /* end else */
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- } /* end else */
+ jintArray rarray = NULL;
+ jboolean bb;
+ jbyte *barr = NULL;
+ jint *iarray = NULL;
+ jint *iap = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToInt: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToInt: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToInt: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jint);
+
+ if (NULL == (rarray = ENVPTR->NewIntArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_INT_ARRAY(ENVONLY, rarray, iarray, &bb, "byteToInt: int array not pinned");
+
+ bp = (char *)barr;
+ iap = iarray;
+ for (ii = 0; ii < len; ii++) {
+ *iap = *(jint *)bp;
+ iap++;
+ bp += sizeof(jint);
+ } /* end for */
+
+done:
+ if (iarray)
+ UNPIN_INT_ARRAY(ENVONLY, rarray, iarray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
+
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B */
@@ -106,40 +101,34 @@ JNIEXPORT jfloatArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jfloatArray rarray;
- int blen;
- jfloat *farray;
- jboolean bb;
- char *bp;
- jfloat *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToFloat: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToFloat: pin failed");
- return NULL;
- } /* end if */
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jfloat);
- rarray = ENVPTR->NewFloatArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToFloat" );
- return NULL;
- } /* end if */
- farray = ENVPTR->GetFloatArrayElements(ENVPAR rarray,&bb);
- if (farray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToFloat: pin farray failed");
- return NULL;
- } /* end if */
+ jfloatArray rarray;
+ jboolean bb;
+ jfloat *farray = NULL;
+ jfloat *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToFloat: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToFloat: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToFloat: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jfloat);
+
+ if (NULL == (rarray = ENVPTR->NewFloatArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_FLOAT_ARRAY(ENVONLY, rarray, farray, &bb, "byteToFloat: float array not pinned");
bp = (char *)barr;
iap = farray;
@@ -149,8 +138,11 @@ Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B
bp += sizeof(jfloat);
} /* end for */
- ENVPTR->ReleaseFloatArrayElements(ENVPAR rarray,farray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (farray)
+ UNPIN_FLOAT_ARRAY(ENVONLY, rarray, farray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B */
@@ -160,42 +152,34 @@ JNIEXPORT jshortArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jshortArray rarray;
- int blen;
- jshort *sarray;
- jboolean bb;
- char *bp;
- jshort *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToShort: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToShort: pin failed");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jshort);
- rarray = ENVPTR->NewShortArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToShort" );
- return NULL;
- } /* end if */
-
- sarray = ENVPTR->GetShortArrayElements(ENVPAR rarray,&bb);
- if (sarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToShort: pin sarray failed");
- return NULL;
- } /* end if */
+ jshortArray rarray;
+ jboolean bb;
+ jshort *sarray = NULL;
+ jshort *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToShort: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToShort: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToShort: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jshort);
+
+ if (NULL == (rarray = ENVPTR->NewShortArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_SHORT_ARRAY(ENVONLY, rarray, sarray, &bb, "byteToShort: short array not pinned");
bp = (char *)barr;
iap = sarray;
@@ -205,53 +189,48 @@ Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B
bp += sizeof(jshort);
} /* end for */
- ENVPTR->ReleaseShortArrayElements(ENVPAR rarray,sarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (sarray)
+ UNPIN_SHORT_ARRAY(ENVONLY, rarray, sarray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B */
-
/* returns long [] */
JNIEXPORT jlongArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jlongArray rarray;
- int blen;
- jlong *larray;
- jboolean bb;
- char *bp;
- jlong *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToLong: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToLong: pin failed");
- return NULL;
- } /* end if */
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jlong);
- rarray = ENVPTR->NewLongArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToLong" );
- return NULL;
- } /* end if */
-
- larray = ENVPTR->GetLongArrayElements(ENVPAR rarray,&bb);
- if (larray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToLong: pin larray failed");
- return NULL;
- } /* end if */
+ jlongArray rarray;
+ jboolean bb;
+ jlong *larray = NULL;
+ jlong *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToLong: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToLong: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToLong: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jlong);
+
+ if (NULL == (rarray = ENVPTR->NewLongArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_LONG_ARRAY(ENVONLY, rarray, larray, &bb, "byteToLong: long array not pinned");
bp = (char *)barr;
iap = larray;
@@ -260,53 +239,49 @@ Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B
iap++;
bp += sizeof(jlong);
} /* end for */
- ENVPTR->ReleaseLongArrayElements(ENVPAR rarray,larray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+
+done:
+ if (larray)
+ UNPIN_LONG_ARRAY(ENVONLY, rarray, larray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B */
-
/* returns double [] */
JNIEXPORT jdoubleArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B
(JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */
{
- jbyte *barr;
- jdoubleArray rarray;
- int blen;
- jdouble *darray;
- jboolean bb;
- char *bp;
- jdouble *iap;
- int ii;
- int len;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToDouble: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToDouble: pin failed");
- return NULL;
- } /* end if */
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
-
- len = blen/(int)sizeof(jdouble);
- rarray = ENVPTR->NewDoubleArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToDouble" );
- return NULL;
- } /* end if */
-
- darray = ENVPTR->GetDoubleArrayElements(ENVPAR rarray,&bb);
- if (darray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToDouble: pin darray failed");
- return NULL;
- } /* end if */
+ jdoubleArray rarray;
+ jboolean bb;
+ jdouble *darray = NULL;
+ jdouble *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+ int len;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToDouble: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToDouble: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToDouble: bdata length < 0");
+ }
+
+ len = blen / (int)sizeof(jdouble);
+
+ if (NULL == (rarray = ENVPTR->NewDoubleArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, &bb, "byteToDouble: double array not pinned");
bp = (char *)barr;
iap = darray;
@@ -316,59 +291,50 @@ Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B
bp += sizeof(jdouble);
} /* end for */
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rarray,darray,0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (darray)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B */
-
/* returns int [] */
JNIEXPORT jintArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jintArray rarray;
- int blen;
- jint *iarray;
- jint *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToInt: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError(env, "byteToInt: pin failed");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jint))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToInt: getLen failed");
- return NULL;
- } /* end if */
+ jintArray rarray;
+ jboolean bb;
+ jint *iarray = NULL;
+ jint *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToInt: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToInt: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToInt: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jint))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToInt: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewIntArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToInt" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewIntArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetIntArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError(env, "byteToInt: pin iarray failed");
- return NULL;
- } /* end if */
+ PIN_INT_ARRAY(ENVONLY, rarray, iarray, &bb, "byteToInt: int array not pinned");
iap = iarray;
for (ii = 0; ii < len; ii++) {
@@ -377,8 +343,11 @@ Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B
bp += sizeof(jint);
} /* end for */
- ENVPTR->ReleaseIntArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (iarray)
+ UNPIN_INT_ARRAY(ENVONLY, rarray, iarray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B */
@@ -388,57 +357,49 @@ JNIEXPORT jshortArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jshortArray rarray;
- int blen;
- jshort *iarray;
- jshort *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToShort: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError( env, "byteToShort: getByte failed?");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jshort))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5badArgument( env, "byteToShort: start or len is out of bounds");
- return NULL;
- } /* end if */
+ jshortArray rarray;
+ jboolean bb;
+ jshort *sarray = NULL;
+ jshort *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToShort: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToShort: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToShort: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jshort))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToShort: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewShortArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToShort" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewShortArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetShortArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError( env, "byteToShort: getShort failed?");
- return NULL;
- } /* end if */
+ PIN_SHORT_ARRAY(ENVONLY, rarray, sarray, &bb, "byteToShort: short array not pinned");
- iap = iarray;
+ iap = sarray;
for (ii = 0; ii < len; ii++) {
*iap = *(jshort *)bp;
iap++;
bp += sizeof(jshort);
} /* end for */
- ENVPTR->ReleaseShortArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (sarray)
+ UNPIN_SHORT_ARRAY(ENVONLY, rarray, sarray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B */
@@ -448,57 +409,49 @@ JNIEXPORT jfloatArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jfloatArray rarray;
- int blen;
- jfloat *iarray;
- jfloat *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToFloat: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError( env, "byteToFloat: getByte failed?");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jfloat))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5badArgument( env, "byteToFloat: start or len is out of bounds");
- return NULL;
- } /* end if */
+ jfloatArray rarray;
+ jboolean bb;
+ jfloat *farray = NULL;
+ jfloat *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToFloat: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToFloat: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToFloat: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jfloat))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToFloat: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewFloatArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToFloat" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewFloatArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetFloatArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError( env, "byteToFloat: getFloat failed?");
- return NULL;
- } /* end if */
+ PIN_FLOAT_ARRAY(ENVONLY, rarray, farray, &bb, "byteToFloat: float array not pinned");
- iap = iarray;
+ iap = farray;
for (ii = 0; ii < len; ii++) {
*iap = *(jfloat *)bp;
iap++;
bp += sizeof(jfloat);
} /* end for */
- ENVPTR->ReleaseFloatArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (farray)
+ UNPIN_FLOAT_ARRAY(ENVONLY, rarray, farray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B */
@@ -508,58 +461,49 @@ JNIEXPORT jlongArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jlongArray rarray;
- int blen;
- jlong *iarray;
- jlong *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToLong: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError( env, "byteToLong: getByte failed?");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jlong))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5badArgument( env, "byteToLong: start or len is out of bounds");
- return NULL;
- } /* end if */
+ jlongArray rarray;
+ jboolean bb;
+ jlong *larray = NULL;
+ jlong *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToLong: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToLong: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToLong: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jlong))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToLong: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewLongArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToLong" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewLongArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetLongArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError( env, "byteToLong: getLong failed?");
- return NULL;
- } /* end if */
+ PIN_LONG_ARRAY(ENVONLY, rarray, larray, &bb, "byteToLong: long array not pinned");
- iap = iarray;
+ iap = larray;
for (ii = 0; ii < len; ii++) {
-
*iap = *(jlong *)bp;
iap++;
bp += sizeof(jlong);
} /* end for */
- ENVPTR->ReleaseLongArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (larray)
+ UNPIN_LONG_ARRAY(ENVONLY, rarray, larray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B */
@@ -569,57 +513,49 @@ JNIEXPORT jdoubleArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B
(JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */
{
- char *bp;
- jbyte *barr;
- jdoubleArray rarray;
- int blen;
- jdouble *iarray;
- jdouble *iap;
- int ii;
- jboolean bb;
-
- if (bdata == NULL) {
- h5nullArgument( env, "byteToDouble: bdata is NULL?");
- return NULL;
- } /* end if */
- barr = ENVPTR->GetByteArrayElements(ENVPAR bdata,&bb);
- if (barr == NULL) {
- h5JNIFatalError( env, "byteToDouble: getByte failed?");
- return NULL;
- } /* end if */
-
- blen = ENVPTR->GetArrayLength(ENVPAR bdata);
- if ((start < 0) || ((int)(start + (len*(int)sizeof(jdouble))) > blen)) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5badArgument( env, "byteToDouble: start or len is out of bounds");
- return NULL;
- } /* end if */
+ jdoubleArray rarray;
+ jboolean bb;
+ jdouble *darray = NULL;
+ jdouble *iap = NULL;
+ jbyte *barr = NULL;
+ char *bp = NULL;
+ int blen;
+ int ii;
+
+ UNUSED(clss);
+
+ if (NULL == bdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "byteToDouble: byte array is NULL");
+
+ PIN_BYTE_ARRAY(ENVONLY, bdata, barr, &bb, "byteToDouble: byte array not pinned");
+
+ if ((blen = ENVPTR->GetArrayLength(ENVONLY, bdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToDouble: bdata length < 0");
+ }
+
+ if ((start < 0) || ((int)(start + (len * (int)sizeof(jdouble))) > blen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "byteToDouble: start < 0 or len exceeded buffer length");
bp = (char *)barr + start;
- rarray = ENVPTR->NewDoubleArray(ENVPAR len);
- if (rarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5outOfMemory( env, "byteToDouble" );
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewDoubleArray(ENVONLY, len)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- iarray = ENVPTR->GetDoubleArrayElements(ENVPAR rarray,&bb);
- if (iarray == NULL) {
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
- h5JNIFatalError( env, "byteToDouble: getDouble failed?");
- return NULL;
- } /* end if */
+ PIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, &bb, "byteToDouble: double array not pinned");
- iap = iarray;
+ iap = darray;
for (ii = 0; ii < len; ii++) {
*iap = *(jdouble *)bp;
iap++;
bp += sizeof(jdouble);
} /* end for */
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR rarray,iarray, 0);
- ENVPTR->ReleaseByteArrayElements(ENVPAR bdata,barr,JNI_ABORT);
+done:
+ if (darray)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, rarray ? 0 : JNI_ABORT);
+ if (barr)
+ UNPIN_BYTE_ARRAY(ENVONLY, bdata, barr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B */
@@ -629,67 +565,59 @@ JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I
(JNIEnv *env, jclass clss, jint start, jint len, jintArray idata) /* IN: array of int */
{
- jint *ip;
- jint *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ jint *ip = NULL;
+ jint *iarr = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
int ival;
char bytes[4];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "intToByte: idata is NULL?");
- return NULL;
- } /* end if */
+ UNUSED(clss);
+
+ if (NULL == idata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "intToByte: int array is NULL");
- iarr = ENVPTR->GetIntArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "intToByte: getInt failed?");
- return NULL;
- } /* end if */
+ PIN_INT_ARRAY(ENVONLY, idata, iarr, &bb, "intToByte: int array not pinned");
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "intToByte: start or len is out of bounds");
- return NULL;
- } /* end if */
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, idata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "intToByte: idata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "intToByte: start < 0 or len exceeded buffer length");
ip = iarr + start;
blen = ilen * (int)sizeof(jint);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "intToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseIntArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "intToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "intToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jint); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jint); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseIntArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (iarr)
+ UNPIN_INT_ARRAY(ENVONLY, idata, iarr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I */
@@ -697,68 +625,61 @@ Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S
- (JNIEnv *env, jclass clss, jint start, jint len, jshortArray idata) /* IN: array of short */
+ (JNIEnv *env, jclass clss, jint start, jint len, jshortArray sdata) /* IN: array of short */
{
- jshort *ip;
- jshort *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jshort *ip = NULL;
+ jshort *sarr = NULL;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
short ival;
char bytes[4];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "shortToByte: idata is NULL?");
- return NULL;
- } /* end if */
- iarr = ENVPTR->GetShortArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "shortToByte: getShort failed?");
- return NULL;
- } /* end if */
-
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseShortArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "shortToByte: start or len is out of bounds");
- return NULL;
- } /* end if */
+ UNUSED(clss);
- ip = iarr + start;
+ if (NULL == sdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "shortToByte: short array is NULL");
+
+ PIN_SHORT_ARRAY(ENVONLY, sdata, sarr, &bb, "shortToByte: short array not pinned");
+
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, sdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "shortToByte: sdata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "shortToByte: start < 0 or len exceeded buffer length");
+
+ ip = sarr + start;
blen = ilen * (int)sizeof(jshort);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseShortArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "shortToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseShortArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "shortToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "shortToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jshort); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jshort); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseShortArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (sarr)
+ UNPIN_SHORT_ARRAY(ENVONLY, sdata, sarr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S */
@@ -766,68 +687,61 @@ Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F
- (JNIEnv *env, jclass clss, jint start, jint len, jfloatArray idata) /* IN: array of float */
+ (JNIEnv *env, jclass clss, jint start, jint len, jfloatArray fdata) /* IN: array of float */
{
- jfloat *ip;
- jfloat *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jfloat *ip = NULL;
+ jfloat *farr = NULL;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
float ival;
char bytes[4];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "floatToByte: idata is NULL?");
- return NULL;
- } /* end if */
- iarr = ENVPTR->GetFloatArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "floatToByte: getFloat failed?");
- return NULL;
- } /* end if */
-
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseFloatArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "floatToByte: start or len is out of bounds");
- return NULL;
- } /* end if */
+ UNUSED(clss);
- ip = iarr + start;
+ if (NULL == fdata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "floatToByte: float array is NULL");
+
+ PIN_FLOAT_ARRAY(ENVONLY, fdata, farr, &bb, "floatToByte: float array not pinned");
+
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, fdata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "floatToByte: fdata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "floatToByte: start < 0 or len exceeded buffer length");
+
+ ip = farr + start;
blen = ilen * (int)sizeof(jfloat);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseFloatArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "floatToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseFloatArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "floatToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "floatToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jfloat); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jfloat); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseFloatArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (farr)
+ UNPIN_FLOAT_ARRAY(ENVONLY, fdata, farr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F */
@@ -835,178 +749,159 @@ Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D
- (JNIEnv *env, jclass clss, jint start, jint len, jdoubleArray idata) /* IN: array of double */
+ (JNIEnv *env, jclass clss, jint start, jint len, jdoubleArray ddata) /* IN: array of double */
{
- jdouble *ip;
- jdouble *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jdouble *ip = NULL;
+ jdouble *darr = NULL;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
double ival;
char bytes[8];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "doubleToByte: idata is NULL?");
- return NULL;
- } /* end if */
- iarr = ENVPTR->GetDoubleArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "doubleToByte: getDouble failed?");
- return NULL;
- } /* end if */
-
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "doubleToByte: start or len is out of bounds");
- return NULL;
- } /* end if */
+ UNUSED(clss);
- ip = iarr + start;
+ if (NULL == ddata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "doubleToByte: double array is NULL");
+
+ PIN_DOUBLE_ARRAY(ENVONLY, ddata, darr, &bb, "doubleToByte: double array not pinned");
+
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, ddata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "doubleToByte: ddata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "doubleToByte: start < 0 or len exceeded buffer length");
+
+ ip = darr + start;
blen = ilen * (int)sizeof(jdouble);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "doubleToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "doubleToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "doubleToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jdouble); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jdouble); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseDoubleArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (darr)
+ UNPIN_DOUBLE_ARRAY(ENVONLY, ddata, darr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D */
-
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J
- (JNIEnv *env, jclass clss, jint start, jint len, jlongArray idata) /* IN: array of long */
+ (JNIEnv *env, jclass clss, jint start, jint len, jlongArray ldata) /* IN: array of long */
{
- jlong *ip;
- jlong *iarr;
- int ilen;
- jbyteArray rarray;
- int blen;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ii;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jlong *ip = NULL;
+ jlong *larr = NULL;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ilen;
+ int blen;
+ int ii;
+ int ij;
union things {
jlong ival;
char bytes[8];
} u;
- if (idata == NULL) {
- h5nullArgument( env, "longToByte: idata is NULL?");
- return NULL;
- } /* end if */
- iarr = ENVPTR->GetLongArrayElements(ENVPAR idata,&bb);
- if (iarr == NULL) {
- h5JNIFatalError( env, "longToByte: getLong failed?");
- return NULL;
- } /* end if */
-
- ilen = ENVPTR->GetArrayLength(ENVPAR idata);
- if ((start < 0) || (((start + len)) > ilen)) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5badArgument( env, "longToByte: start or len is out of bounds?\n");
- return NULL;
- } /* end if */
+ UNUSED(clss);
- ip = iarr + start;
+ if (NULL == ldata)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "longToByte: long array is NULL");
+
+ PIN_LONG_ARRAY(ENVONLY, ldata, larr, &bb, "longToByte: long array not pinned");
+
+ if ((ilen = ENVPTR->GetArrayLength(ENVONLY, ldata)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "longToByte: ldata length < 0");
+ }
+
+ if ((start < 0) || (((start + len)) > ilen))
+ H5_JNI_FATAL_ERROR(ENVONLY, "longToByte: start < 0 or len exceeded buffer length");
+
+ ip = larr + start;
blen = ilen * (int)sizeof(jlong);
- rarray = ENVPTR->NewByteArray(ENVPAR blen);
- if (rarray == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5outOfMemory( env, "longToByte" );
- return NULL;
- } /* end if */
-
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- ENVPTR->ReleaseLongArrayElements(ENVPAR idata,iarr,JNI_ABORT);
- h5JNIFatalError( env, "longToByte: getByte failed?");
- return NULL;
- } /* end if */
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, blen)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "longToByte: byte array not pinned");
bap = barray;
for (ii = 0; ii < len; ii++) {
u.ival = *ip++;
- for (ij = 0; ij < sizeof(jlong); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jlong); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
- ENVPTR->ReleaseLongArrayElements(ENVPAR idata,iarr,JNI_ABORT);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, rarray ? 0 : JNI_ABORT);
+ if (larr)
+ UNPIN_LONG_ARRAY(ENVONLY, ldata, larr, JNI_ABORT);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J */
-
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_intToByte__I
(JNIEnv *env, jclass clss, jint idata) /* IN: int */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- int ij;
- jboolean bb;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
int ival;
char bytes[sizeof(int)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jint));
- if (rarray == NULL) {
- h5outOfMemory( env, "intToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jint))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "intToByte: getByte failed?");
- return NULL;
- } /* end if */
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "intToByte: byte array not pinned");
bap = barray;
u.ival = idata;
- for (ij = 0; ij < sizeof(jint); ij++) {
+ for (ij = 0; (size_t) ij < sizeof(jint); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_intToByte__I */
@@ -1014,38 +909,35 @@ Java_hdf_hdf5lib_HDFNativeData_intToByte__I
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_floatToByte__F
- (JNIEnv *env, jclass clss, jfloat idata) /* IN: int */
+ (JNIEnv *env, jclass clss, jfloat fdata) /* IN: float */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
float ival;
char bytes[sizeof(float)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jfloat));
- if (rarray == NULL) {
- h5outOfMemory( env, "floatToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "floatToByte: getByte failed?");
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jfloat))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "floatToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jfloat); ij++) {
+ u.ival = fdata;
+ for (ij = 0; (size_t) ij < sizeof(jfloat); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_floatToByte__F */
@@ -1053,118 +945,107 @@ Java_hdf_hdf5lib_HDFNativeData_floatToByte__F
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_shortToByte__S
- (JNIEnv *env, jclass clss, jshort idata) /* IN: short */
+ (JNIEnv *env, jclass clss, jshort sdata) /* IN: short */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
short ival;
char bytes[sizeof(short)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jshort));
- if (rarray == NULL) {
- h5outOfMemory( env, "shortToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "shortToByte: getShort failed?");
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jshort))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "shortToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jshort); ij++) {
+ u.ival = sdata;
+ for (ij = 0; (size_t) ij < sizeof(jshort); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_shortToByte__S */
-
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D
- (JNIEnv *env, jclass clss, jdouble idata) /* IN: double */
+ (JNIEnv *env, jclass clss, jdouble ddata) /* IN: double */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
double ival;
char bytes[sizeof(double)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jdouble));
- if (rarray == NULL) {
- h5outOfMemory( env, "doubleToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
+
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jdouble))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "doubleToByte: getDouble failed?");
- return NULL;
- } /* end if */
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "doubleToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jdouble); ij++) {
+ u.ival = ddata;
+ for (ij = 0; (size_t) ij < sizeof(jdouble); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D */
-
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_longToByte__J
- (JNIEnv *env, jclass clss, jlong idata) /* IN: array of long */
+ (JNIEnv *env, jclass clss, jlong ldata) /* IN: long */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
jlong ival;
char bytes[sizeof(jlong)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jlong));
- if (rarray == NULL) {
- h5outOfMemory( env, "longToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "longToByte: getLong failed?");
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jlong))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "longToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jlong); ij++) {
+ u.ival = ldata;
+ for (ij = 0; (size_t) ij < sizeof(jlong); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_longToByte__J */
@@ -1172,38 +1053,35 @@ Java_hdf_hdf5lib_HDFNativeData_longToByte__J
/* returns byte [] */
JNIEXPORT jbyteArray JNICALL
Java_hdf_hdf5lib_HDFNativeData_byteToByte__B
- (JNIEnv *env, jclass clss, jbyte idata) /* IN: array of long */
+ (JNIEnv *env, jclass clss, jbyte bdata) /* IN: byte */
{
- jbyteArray rarray;
- jbyte *barray;
- jbyte *bap;
- jboolean bb;
- int ij;
+ jbyteArray rarray;
+ jboolean bb;
+ jbyte *barray = NULL;
+ jbyte *bap = NULL;
+ int ij;
union things {
jbyte ival;
char bytes[sizeof(jbyte)];
} u;
- rarray = ENVPTR->NewByteArray(ENVPAR sizeof(jbyte));
- if (rarray == NULL) {
- h5outOfMemory( env, "byteToByte" );
- return NULL;
- } /* end if */
+ UNUSED(clss);
- barray = ENVPTR->GetByteArrayElements(ENVPAR rarray,&bb);
- if (barray == NULL) {
- h5JNIFatalError( env, "byteToByte: getByte failed?");
- return NULL;
- } /* end if */
+ if (NULL == (rarray = ENVPTR->NewByteArray(ENVONLY, sizeof(jbyte))))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "byteToByte: byte array not pinned");
bap = barray;
- u.ival = idata;
- for (ij = 0; ij < sizeof(jbyte); ij++) {
+ u.ival = bdata;
+ for (ij = 0; (size_t) ij < sizeof(jbyte); ij++) {
*bap = u.bytes[ij];
bap++;
} /* end for */
- ENVPTR->ReleaseByteArrayElements(ENVPAR rarray,(jbyte *)barray, 0);
+done:
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, rarray, barray, 0);
return rarray;
} /* end Java_hdf_hdf5lib_HDFNativeData_byteToByte__B */