diff options
| author | Dana Robinson <derobins@hdfgroup.org> | 2021-05-06 21:07:08 (GMT) |
|---|---|---|
| committer | Dana Robinson <derobins@hdfgroup.org> | 2021-05-06 21:07:08 (GMT) |
| commit | f2cb86499efa2fe6f44ca2f4e93ea62e952d0fb0 (patch) | |
| tree | 8c26de9faca9450513bf771d36ded0593b66419a /java/src/jni | |
| parent | 457b199a383865febbd52045b343b902ef383512 (diff) | |
| download | hdf5-f2cb86499efa2fe6f44ca2f4e93ea62e952d0fb0.zip hdf5-f2cb86499efa2fe6f44ca2f4e93ea62e952d0fb0.tar.gz hdf5-f2cb86499efa2fe6f44ca2f4e93ea62e952d0fb0.tar.bz2 | |
Brings java wrapper updates from develop
The wrappers compile but fail tests due to some missing develop
functionality
Diffstat (limited to 'java/src/jni')
58 files changed, 1798 insertions, 699 deletions
diff --git a/java/src/jni/CMakeLists.txt b/java/src/jni/CMakeLists.txt index d137747..ab306ef 100644 --- a/java/src/jni/CMakeLists.txt +++ b/java/src/jni/CMakeLists.txt @@ -45,6 +45,7 @@ set (HDF5_JAVA_JNI_CHDRS ${HDF5_JAVA_JNI_SOURCE_DIR}/h5fImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5gImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5iImp.h + ${HDF5_JAVA_JNI_SOURCE_DIR}/h5Imp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5jni.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.h diff --git a/java/src/jni/exceptionImp.c b/java/src/jni/exceptionImp.c index 6e08023..3ccb6ef 100644 --- a/java/src/jni/exceptionImp.c +++ b/java/src/jni/exceptionImp.c @@ -262,12 +262,25 @@ done: * exception. */ jboolean -h5outOfMemory(JNIEnv *env, const char *functName) +h5outOfMemory(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/OutOfMemoryError"); + return H5JNIErrorClass(env, message, "java/lang/OutOfMemoryError"); } /* end h5outOfMemory() */ /* + * Create and throw an 'AssertionError' + * + * Note: This routine never returns from the 'throw', + * and the Java native method immediately raises the + * exception. + */ +jboolean +h5assertion(JNIEnv *env, const char *message) +{ + return H5JNIErrorClass(env, message, "java/lang/AssertionError"); +} /* end h5assertion() */ + +/* * A fatal error in a JNI call * Create and throw an 'InternalError' * @@ -276,9 +289,9 @@ h5outOfMemory(JNIEnv *env, const char *functName) * exception. */ jboolean -h5JNIFatalError(JNIEnv *env, const char *functName) +h5JNIFatalError(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/InternalError"); + return H5JNIErrorClass(env, message, "java/lang/InternalError"); } /* end h5JNIFatalError() */ /* @@ -290,9 +303,9 @@ h5JNIFatalError(JNIEnv *env, const char *functName) * exception. */ jboolean -h5nullArgument(JNIEnv *env, const char *functName) +h5nullArgument(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/NullPointerException"); + return H5JNIErrorClass(env, message, "java/lang/NullPointerException"); } /* end h5nullArgument() */ /* @@ -304,9 +317,9 @@ h5nullArgument(JNIEnv *env, const char *functName) * exception. */ jboolean -h5badArgument(JNIEnv *env, const char *functName) +h5badArgument(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/IllegalArgumentException"); + return H5JNIErrorClass(env, message, "java/lang/IllegalArgumentException"); } /* end h5badArgument() */ /* @@ -318,9 +331,9 @@ h5badArgument(JNIEnv *env, const char *functName) * exception. */ jboolean -h5unimplemented(JNIEnv *env, const char *functName) +h5unimplemented(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/UnsupportedOperationException"); + return H5JNIErrorClass(env, message, "java/lang/UnsupportedOperationException"); } /* end h5unimplemented() */ /* h5raiseException(). This routine is called to generate diff --git a/java/src/jni/exceptionImp.h b/java/src/jni/exceptionImp.h index 4b81605..38469df 100644 --- a/java/src/jni/exceptionImp.h +++ b/java/src/jni/exceptionImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_exception */ -#ifndef _Included_hdf_hdf5lib_H5_exception -#define _Included_hdf_hdf5lib_H5_exception +#ifndef Included_hdf_hdf5lib_H5_exception +#define Included_hdf_hdf5lib_H5_exception #ifdef __cplusplus extern "C" { @@ -68,4 +67,4 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMi } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_exception */ +#endif /* Included_hdf_hdf5lib_H5_exception */ diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index 4b9a276..7354e95 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -355,6 +355,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1BADGROUP(JNIEnv *env, jclass cls) return H5E_BADGROUP; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADITER(JNIEnv *env, jclass cls) +{ + return H5E_BADITER; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1BADMESG(JNIEnv *env, jclass cls) { return H5E_BADMESG; @@ -404,8 +409,26 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANAPPLY(JNIEnv *env, jclass cls) { return H5E_CANAPPLY; } -/*JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTALLOC(JNIEnv *env, jclass cls) { return H5E_CANTALLOC; }*/ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTALLOC(JNIEnv *env, jclass cls) +{ + return H5E_CANTALLOC; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTAPPEND(JNIEnv *env, jclass cls) +{ + return H5E_CANTAPPEND; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTATTACH(JNIEnv *env, jclass cls) +{ + return H5E_CANTATTACH; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLEAN(JNIEnv *env, jclass cls) +{ + return H5E_CANTCLEAN; +} JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLIP(JNIEnv *env, jclass cls) { @@ -417,6 +440,21 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLOSEFILE(JNIEnv *env, jclass cls) return H5E_CANTCLOSEFILE; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLOSEOBJ(JNIEnv *env, jclass cls) +{ + return H5E_CANTCLOSEOBJ; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOMPARE(JNIEnv *env, jclass cls) +{ + return H5E_CANTCOMPARE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOMPUTE(JNIEnv *env, jclass cls) +{ + return H5E_CANTCOMPUTE; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCONVERT(JNIEnv *env, jclass cls) { return H5E_CANTCONVERT; @@ -427,6 +465,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOPY(JNIEnv *env, jclass cls) return H5E_CANTCOPY; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCORK(JNIEnv *env, jclass cls) +{ + return H5E_CANTCORK; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOUNT(JNIEnv *env, jclass cls) { return H5E_CANTCOUNT; @@ -457,11 +500,36 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDELETEFILE(JNIEnv *env, jclass cls) return H5E_CANTDELETEFILE; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDEPEND(JNIEnv *env, jclass cls) +{ + return H5E_CANTDEPEND; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDIRTY(JNIEnv *env, jclass cls) +{ + return H5E_CANTDIRTY; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFILTER(JNIEnv *env, jclass cls) +{ + return H5E_CANTFILTER; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTENCODE(JNIEnv *env, jclass cls) { return H5E_CANTENCODE; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTEXPUNGE(JNIEnv *env, jclass cls) +{ + return H5E_CANTEXPUNGE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTEXTEND(JNIEnv *env, jclass cls) +{ + return H5E_CANTEXTEND; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFLUSH(JNIEnv *env, jclass cls) { return H5E_CANTFLUSH; @@ -472,11 +540,26 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFREE(JNIEnv *env, jclass cls) return H5E_CANTFREE; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGATHER(JNIEnv *env, jclass cls) +{ + return H5E_CANTGATHER; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGC(JNIEnv *env, jclass cls) +{ + return H5E_CANTGC; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGET(JNIEnv *env, jclass cls) { return H5E_CANTGET; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGETSIZE(JNIEnv *env, jclass cls) +{ + return H5E_CANTGETSIZE; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINC(JNIEnv *env, jclass cls) { return H5E_CANTINC; @@ -487,6 +570,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINIT(JNIEnv *env, jclass cls) return H5E_CANTINIT; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINS(JNIEnv *env, jclass cls) +{ + return H5E_CANTINS; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINSERT(JNIEnv *env, jclass cls) { return H5E_CANTINSERT; @@ -507,11 +595,56 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOCK(JNIEnv *env, jclass cls) return H5E_CANTLOCK; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOCKFILE(JNIEnv *env, jclass cls) +{ + return H5E_CANTLOCKFILE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKCLEAN(JNIEnv *env, jclass cls) +{ + return H5E_CANTMARKCLEAN; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKDIRTY(JNIEnv *env, jclass cls) +{ + return H5E_CANTMARKDIRTY; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKSERIALIZED(JNIEnv *env, jclass cls) +{ + return H5E_CANTMARKSERIALIZED; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKUNSERIALIZED(JNIEnv *env, jclass cls) +{ + return H5E_CANTMARKUNSERIALIZED; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMERGE(JNIEnv *env, jclass cls) +{ + return H5E_CANTMERGE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMODIFY(JNIEnv *env, jclass cls) +{ + return H5E_CANTMODIFY; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMOVE(JNIEnv *env, jclass cls) +{ + return H5E_CANTMOVE; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTNEXT(JNIEnv *env, jclass cls) { return H5E_CANTNEXT; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTNOTIFY(JNIEnv *env, jclass cls) +{ + return H5E_CANTNOTIFY; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPENFILE(JNIEnv *env, jclass cls) { return H5E_CANTOPENFILE; @@ -521,8 +654,36 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPENOBJ(JNIEnv *env, jclass cls) { return H5E_CANTOPENOBJ; } -/*JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRECV(JNIEnv *env, jclass cls) { return H5E_CANTRECV; }*/ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPERATE(JNIEnv *env, jclass cls) +{ + return H5E_CANTOPERATE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPACK(JNIEnv *env, jclass cls) +{ + return H5E_CANTPACK; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPIN(JNIEnv *env, jclass cls) +{ + return H5E_CANTPIN; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPROTECT(JNIEnv *env, jclass cls) +{ + return H5E_CANTPROTECT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRECV(JNIEnv *env, jclass cls) +{ + return H5E_CANTRECV; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREDISTRIBUTE(JNIEnv *env, jclass cls) +{ + return H5E_CANTREDISTRIBUTE; +} JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREGISTER(JNIEnv *env, jclass cls) { @@ -534,6 +695,41 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRELEASE(JNIEnv *env, jclass cls) return H5E_CANTRELEASE; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREMOVE(JNIEnv *env, jclass cls) +{ + return H5E_CANTREMOVE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRENAME(JNIEnv *env, jclass cls) +{ + return H5E_CANTRENAME; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESET(JNIEnv *env, jclass cls) +{ + return H5E_CANTRESET; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESIZE(JNIEnv *env, jclass cls) +{ + return H5E_CANTRESIZE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESTORE(JNIEnv *env, jclass cls) +{ + return H5E_CANTRESTORE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREVIVE(JNIEnv *env, jclass cls) +{ + return H5E_CANTREVIVE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSHRINK(JNIEnv *env, jclass cls) +{ + return H5E_CANTSHRINK; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSELECT(JNIEnv *env, jclass cls) { return H5E_CANTSELECT; @@ -544,16 +740,71 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSET(JNIEnv *env, jclass cls) return H5E_CANTSET; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSERIALIZE(JNIEnv *env, jclass cls) +{ + return H5E_CANTSERIALIZE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSORT(JNIEnv *env, jclass cls) +{ + return H5E_CANTSORT; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSPLIT(JNIEnv *env, jclass cls) { return H5E_CANTSPLIT; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSWAP(JNIEnv *env, jclass cls) +{ + return H5E_CANTSWAP; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTTAG(JNIEnv *env, jclass cls) +{ + return H5E_CANTTAG; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNCORK(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNCORK; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNDEPEND(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNDEPEND; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNLOCK(JNIEnv *env, jclass cls) { return H5E_CANTUNLOCK; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNLOCKFILE(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNLOCKFILE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNPIN(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNPIN; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNPROTECT(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNPROTECT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNSERIALIZE(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNSERIALIZE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUPDATE(JNIEnv *env, jclass cls) +{ + return H5E_CANTUPDATE; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1CLOSEERROR(JNIEnv *env, jclass cls) { return H5E_CLOSEERROR; @@ -564,6 +815,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1COMPLEN(JNIEnv *env, jclass cls) return H5E_COMPLEN; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CONTEXT(JNIEnv *env, jclass cls) +{ + return H5E_CONTEXT; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1DATASET(JNIEnv *env, jclass cls) { return H5E_DATASET; @@ -589,16 +845,31 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1DUPCLASS(JNIEnv *env, jclass cls) return H5E_DUPCLASS; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1EARRAY(JNIEnv *env, jclass cls) +{ + return H5E_EARRAY; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1EFL(JNIEnv *env, jclass cls) { return H5E_EFL; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1ERROR(JNIEnv *env, jclass cls) +{ + return H5E_ERROR; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1EXISTS(JNIEnv *env, jclass cls) { return H5E_EXISTS; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FARRAY(JNIEnv *env, jclass cls) +{ + return H5E_FARRAY; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1FCNTL(JNIEnv *env, jclass cls) { return H5E_FCNTL; @@ -619,6 +890,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1FILEOPEN(JNIEnv *env, jclass cls) return H5E_FILEOPEN; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FSPACE(JNIEnv *env, jclass cls) +{ + return H5E_FSPACE; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1FUNC(JNIEnv *env, jclass cls) { return H5E_FUNC; @@ -629,6 +905,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1HEAP(JNIEnv *env, jclass cls) return H5E_HEAP; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1INCONSISTENTSTATE(JNIEnv *env, jclass cls) +{ + return H5E_INCONSISTENTSTATE; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1INTERNAL(JNIEnv *env, jclass cls) { return H5E_INTERNAL; @@ -648,11 +929,21 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1LINKCOUNT(JNIEnv *env, jclass cls) { return H5E_LINKCOUNT; } +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1LOGGING(JNIEnv *env, jclass cls) +{ + return H5E_LOGGING; +} JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1MAJOR(JNIEnv *env, jclass cls) { return H5E_MAJOR; } +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1MAP(JNIEnv *env, jclass cls) +{ + return H5E_MAP; +} JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1MINOR(JNIEnv *env, jclass cls) { @@ -674,6 +965,21 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1MPIERRSTR(JNIEnv *env, jclass cls) return H5E_MPIERRSTR; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1NLINKS(JNIEnv *env, jclass cls) +{ + return H5E_NLINKS; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1NO_1INDEPENDENT(JNIEnv *env, jclass cls) +{ + return H5E_NO_INDEPENDENT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOENCODER(JNIEnv *env, jclass cls) +{ + return H5E_NOENCODER; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1NOFILTER(JNIEnv *env, jclass cls) { return H5E_NOFILTER; @@ -714,16 +1020,41 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTHDF5(JNIEnv *env, jclass cls) return H5E_NOTHDF5; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTREGISTERED(JNIEnv *env, jclass cls) +{ + return H5E_NOTREGISTERED; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1OBJOPEN(JNIEnv *env, jclass cls) +{ + return H5E_OBJOPEN; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1OHDR(JNIEnv *env, jclass cls) { return H5E_OHDR; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1OPENERROR(JNIEnv *env, jclass cls) +{ + return H5E_OPENERROR; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1OVERFLOW(JNIEnv *env, jclass cls) { return H5E_OVERFLOW; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1PAGEBUF(JNIEnv *env, jclass cls) +{ + return H5E_PAGEBUF; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1PATH(JNIEnv *env, jclass cls) +{ + return H5E_PATH; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1PLINE(JNIEnv *env, jclass cls) { return H5E_PLINE; @@ -734,6 +1065,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1PLIST(JNIEnv *env, jclass cls) return H5E_PLIST; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1PLUGIN(JNIEnv *env, jclass cls) +{ + return H5E_PLUGIN; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1PROTECT(JNIEnv *env, jclass cls) { return H5E_PROTECT; @@ -764,11 +1100,26 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1SEEKERROR(JNIEnv *env, jclass cls) return H5E_SEEKERROR; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1SETDISALLOWED(JNIEnv *env, jclass cls) +{ + return H5E_SETDISALLOWED; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1SETLOCAL(JNIEnv *env, jclass cls) { return H5E_SETLOCAL; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1SLIST(JNIEnv *env, jclass cls) +{ + return H5E_SLIST; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1SOHM(JNIEnv *env, jclass cls) +{ + return H5E_SOHM; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1STORAGE(JNIEnv *env, jclass cls) { return H5E_STORAGE; @@ -779,6 +1130,21 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1SYM(JNIEnv *env, jclass cls) return H5E_SYM; } JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1SYSERRSTR(JNIEnv *env, jclass cls) +{ + return H5E_SYSERRSTR; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1SYSTEM(JNIEnv *env, jclass cls) +{ + return H5E_SYSTEM; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1TRAVERSE(JNIEnv *env, jclass cls) +{ + return H5E_TRAVERSE; +} +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1TRUNCATED(JNIEnv *env, jclass cls) { return H5E_TRUNCATED; @@ -844,11 +1210,6 @@ Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1FAIL(JNIEnv *env, jclass cls) { return H5ES_STATUS_FAIL; } -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1CANCELED(JNIEnv *env, jclass cls) -{ - return H5ES_STATUS_CANCELED; -} /* Java does not have unsigned native types */ H5_GCC_DIAG_OFF("sign-conversion") diff --git a/java/src/jni/h5Imp.h b/java/src/jni/h5Imp.h index 226a2fe..8ab7662 100644 --- a/java/src/jni/h5Imp.h +++ b/java/src/jni/h5Imp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5 */ -#ifndef _Included_hdf_hdf5lib_H5_H5 -#define _Included_hdf_hdf5lib_H5_H5 +#ifndef Included_hdf_hdf5lib_H5_H5 +#define Included_hdf_hdf5lib_H5_H5 #ifdef __cplusplus extern "C" { @@ -83,4 +82,4 @@ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe(JNIEnv } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5 */ +#endif /* Included_hdf_hdf5lib_H5_H5 */ diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index c365144..6bf86d0 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -1133,7 +1133,7 @@ H5AreadVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *)readBuf)[i * typeSize]), typeSize, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *)readBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) @@ -1425,7 +1425,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref(JNIEnv *env, jclass clss, jlong attr_id, j for (i = 0; i < n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) diff --git a/java/src/jni/h5aImp.h b/java/src/jni/h5aImp.h index 7615946..aee0e40 100644 --- a/java/src/jni/h5aImp.h +++ b/java/src/jni/h5aImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5A */ -#ifndef _Included_hdf_hdf5lib_H5_H5A -#define _Included_hdf_hdf5lib_H5_H5A +#ifndef Included_hdf_hdf5lib_H5_H5A +#define Included_hdf_hdf5lib_H5_H5A #ifdef __cplusplus extern "C" { @@ -376,4 +375,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name(JNIEnv *, jclass } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5A */ +#endif /* Included_hdf_hdf5lib_H5_H5A */ diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index f8f2325..73b252a 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -1290,7 +1290,7 @@ H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *)readBuf)[i * typeSize]), typeSize, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *)readBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) @@ -1669,8 +1669,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref(JNIEnv *env, jclass clss, jlong dataset_id for (i = 0; i < n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0, - 0)) + if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) diff --git a/java/src/jni/h5dImp.h b/java/src/jni/h5dImp.h index c1ed065..e339dad 100644 --- a/java/src/jni/h5dImp.h +++ b/java/src/jni/h5dImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5D */ -#ifndef _Included_hdf_hdf5lib_H5_H5D -#define _Included_hdf_hdf5lib_H5_H5D +#ifndef Included_hdf_hdf5lib_H5_H5D +#define Included_hdf_hdf5lib_H5_H5D #ifdef __cplusplus extern "C" { @@ -323,4 +322,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Drefresh(JNIEnv *, jclass, jlong); } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5D */ +#endif /* Included_hdf_hdf5lib_H5_H5D */ diff --git a/java/src/jni/h5eImp.c b/java/src/jni/h5eImp.c index 7d7a2cf..5bdeae8 100644 --- a/java/src/jni/h5eImp.c +++ b/java/src/jni/h5eImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5eImp.h b/java/src/jni/h5eImp.h index d849b92..95e43fa 100644 --- a/java/src/jni/h5eImp.h +++ b/java/src/jni/h5eImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5E */ -#ifndef _Included_hdf_hdf5lib_H5_H5E -#define _Included_hdf_hdf5lib_H5_H5E +#ifndef Included_hdf_hdf5lib_H5_H5E +#define Included_hdf_hdf5lib_H5_H5E #ifdef __cplusplus extern "C" { @@ -145,4 +144,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Ewalk2(JNIEnv *, jclass, jlong, jlo } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5E */ +#endif /* Included_hdf_hdf5lib_H5_H5E */ diff --git a/java/src/jni/h5fImp.h b/java/src/jni/h5fImp.h index ed90ee9..bf2f199 100644 --- a/java/src/jni/h5fImp.h +++ b/java/src/jni/h5fImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5F */ -#ifndef _Included_hdf_hdf5lib_H5_H5F -#define _Included_hdf_hdf5lib_H5_H5F +#ifndef Included_hdf_hdf5lib_H5_H5F +#define Included_hdf_hdf5lib_H5_H5F #ifdef __cplusplus extern "C" { @@ -237,4 +236,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds(JNIEnv *, jcla } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5F */ +#endif /* Included_hdf_hdf5lib_H5_H5F */ diff --git a/java/src/jni/h5gImp.h b/java/src/jni/h5gImp.h index 393d5d8..b7130ed 100644 --- a/java/src/jni/h5gImp.h +++ b/java/src/jni/h5gImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5G */ -#ifndef _Included_hdf_hdf5lib_H5_H5G -#define _Included_hdf_hdf5lib_H5_H5G +#ifndef Included_hdf_hdf5lib_H5_H5G +#define Included_hdf_hdf5lib_H5_H5G #ifdef __cplusplus extern "C" { @@ -97,4 +96,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Grefresh(JNIEnv *, jclass, jlong); } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5G */ +#endif /* Included_hdf_hdf5lib_H5_H5G */ diff --git a/java/src/jni/h5iImp.h b/java/src/jni/h5iImp.h index eff5048..08d5fa1 100644 --- a/java/src/jni/h5iImp.h +++ b/java/src/jni/h5iImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5I */ -#ifndef _Included_hdf_hdf5lib_H5_H5I -#define _Included_hdf_hdf5lib_H5_H5I +#ifndef Included_hdf_hdf5lib_H5_H5I +#define Included_hdf_hdf5lib_H5_H5I #ifdef __cplusplus extern "C" { @@ -131,4 +130,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Idestroy_1type(JNIEnv *, jclass, ji } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5I */ +#endif /* Included_hdf_hdf5lib_H5_H5I */ diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h index fb6f22a..2c93846 100644 --- a/java/src/jni/h5jni.h +++ b/java/src/jni/h5jni.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -22,8 +21,8 @@ #include <string.h> #include "H5private.h" -#ifndef _Included_h5jni -#define _Included_h5jni +#ifndef Included_h5jni +#define Included_h5jni #ifdef __cplusplus #define ENVPTR (env) @@ -267,9 +266,10 @@ extern jboolean h5JNIFatalError(JNIEnv *env, const char *); extern jboolean h5nullArgument(JNIEnv *env, const char *); extern jboolean h5badArgument(JNIEnv *env, const char *); extern jboolean h5outOfMemory(JNIEnv *env, const char *); +extern jboolean h5assertion(JNIEnv *env, const char *); +extern jboolean h5unimplemented(JNIEnv *env, const char *); extern jboolean h5libraryError(JNIEnv *env); extern jboolean h5raiseException(JNIEnv *env, const char *, const char *); -extern jboolean h5unimplemented(JNIEnv *env, const char *functName); /* * The following macros are to facilitate immediate cleanup+return @@ -305,21 +305,27 @@ extern jboolean h5unimplemented(JNIEnv *env, const char *functName); goto done; \ } while (0) -#define H5_LIBRARY_ERROR(env) \ +#define H5_ASSERTION_ERROR(env, message) \ do { \ - h5libraryError(env); \ + h5assertion(env, message); \ goto done; \ } while (0) -#define H5_RAISE_EXCEPTION(env, message, exception) \ +#define H5_UNIMPLEMENTED(env, message) \ do { \ - h5raiseException(env, message, exception); \ + h5unimplemented(env, message); \ goto done; \ } while (0) -#define H5_UNIMPLEMENTED(env, message) \ +#define H5_LIBRARY_ERROR(env) \ do { \ - h5unimplemented(env, message); \ + h5libraryError(env); \ + goto done; \ + } while (0) + +#define H5_RAISE_EXCEPTION(env, message, exception) \ + do { \ + h5raiseException(env, message, exception); \ goto done; \ } while (0) @@ -338,4 +344,4 @@ extern jobject create_H5O_token_t(JNIEnv *env, const H5O_token_t *token, hbool_t } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_h5jni */ +#endif /* Included_h5jni */ diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c index fabd920..43db4e9 100644 --- a/java/src/jni/h5lImp.c +++ b/java/src/jni/h5lImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5lImp.h b/java/src/jni/h5lImp.h index 2e949fe..85aff03 100644 --- a/java/src/jni/h5lImp.h +++ b/java/src/jni/h5lImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5_H5L */ -#ifndef _Included_hdf_hdf5lib_H5_H5L -#define _Included_hdf_hdf5lib_H5_H5L +#ifndef Included_hdf_hdf5lib_H5_H5L +#define Included_hdf_hdf5lib_H5_H5L #ifdef __cplusplus extern "C" { @@ -171,4 +170,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lunregister(JNIEnv *, jclass, jint) } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5L */ +#endif /* Included_hdf_hdf5lib_H5_H5L */ diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c index e06ad79..3037bc6 100644 --- a/java/src/jni/h5oImp.c +++ b/java/src/jni/h5oImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5oImp.h b/java/src/jni/h5oImp.h index e6675be..a7d7f31 100644 --- a/java/src/jni/h5oImp.h +++ b/java/src/jni/h5oImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5_H5O */ -#ifndef _Included_hdf_hdf5lib_H5_H5O -#define _Included_hdf_hdf5lib_H5_H5O +#ifndef Included_hdf_hdf5lib_H5_H5O +#define Included_hdf_hdf5lib_H5_H5O #ifdef __cplusplus extern "C" { @@ -218,4 +217,4 @@ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled(JN } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5O */ +#endif /* Included_hdf_hdf5lib_H5_H5O */ diff --git a/java/src/jni/h5pACPLImp.c b/java/src/jni/h5pACPLImp.c index 611016f..6290e0e 100644 --- a/java/src/jni/h5pACPLImp.c +++ b/java/src/jni/h5pACPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pACPLImp.h b/java/src/jni/h5pACPLImp.h index 21c0cc6..15fcf33 100644 --- a/java/src/jni/h5pACPLImp.h +++ b/java/src/jni/h5pACPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PACPL -#define _Included_hdf_hdf5lib_H5_H5PACPL +#ifndef Included_hdf_hdf5lib_H5_H5PACPL +#define Included_hdf_hdf5lib_H5_H5PACPL #include <jni.h> @@ -24,4 +23,4 @@ extern "C" { } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PACPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PACPL */ diff --git a/java/src/jni/h5pDAPLImp.c b/java/src/jni/h5pDAPLImp.c index 430fc79..82802b9 100644 --- a/java/src/jni/h5pDAPLImp.c +++ b/java/src/jni/h5pDAPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDAPLImp.h b/java/src/jni/h5pDAPLImp.h index a15e964..bf11fef 100644 --- a/java/src/jni/h5pDAPLImp.h +++ b/java/src/jni/h5pDAPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PDAPL -#define _Included_hdf_hdf5lib_H5_H5PDAPL +#ifndef Included_hdf_hdf5lib_H5_H5PDAPL +#define Included_hdf_hdf5lib_H5_H5PDAPL #include <jni.h> @@ -94,4 +93,4 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap(JNIEnv } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PDAPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PDAPL */ diff --git a/java/src/jni/h5pDCPLImp.c b/java/src/jni/h5pDCPLImp.c index 9e8b2b6..760a5a8 100644 --- a/java/src/jni/h5pDCPLImp.c +++ b/java/src/jni/h5pDCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDCPLImp.h b/java/src/jni/h5pDCPLImp.h index 6adcbe4..46d1cc3 100644 --- a/java/src/jni/h5pDCPLImp.h +++ b/java/src/jni/h5pDCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PDCPL -#define _Included_hdf_hdf5lib_H5_H5PDCPL +#ifndef Included_hdf_hdf5lib_H5_H5PDCPL +#define Included_hdf_hdf5lib_H5_H5PDCPL #include <jni.h> @@ -321,4 +320,4 @@ JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix(JNIEnv *, } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PDCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PDCPL */ diff --git a/java/src/jni/h5pDXPLImp.c b/java/src/jni/h5pDXPLImp.c index 8b930dc..c555d53 100644 --- a/java/src/jni/h5pDXPLImp.c +++ b/java/src/jni/h5pDXPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDXPLImp.h b/java/src/jni/h5pDXPLImp.h index 8d2df68..21c40c4 100644 --- a/java/src/jni/h5pDXPLImp.h +++ b/java/src/jni/h5pDXPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PDXPL -#define _Included_hdf_hdf5lib_H5_H5PDXPL +#ifndef Included_hdf_hdf5lib_H5_H5PDXPL +#define Included_hdf_hdf5lib_H5_H5PDXPL #include <jni.h> @@ -182,4 +181,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios(JNIEnv *, jclas } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PDXPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PDXPL */ diff --git a/java/src/jni/h5pFAPLImp.c b/java/src/jni/h5pFAPLImp.c index 46adc30..ad85aae 100644 --- a/java/src/jni/h5pFAPLImp.c +++ b/java/src/jni/h5pFAPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -1364,6 +1363,76 @@ done: /* * Class: hdf_hdf5lib_H5 + * Method: H5Pset_file_locking + * Signature: (JZZ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id, jboolean use_file_locking, + jboolean ignore_when_disabled) +{ + hbool_t use_file_locking_val = TRUE; + hbool_t ignore_when_disabled_val = TRUE; + + UNUSED(clss); + + use_file_locking_val = (use_file_locking == JNI_TRUE) ? TRUE : FALSE; + ignore_when_disabled_val = (ignore_when_disabled == JNI_TRUE) ? TRUE : FALSE; + + if (H5Pset_file_locking((hid_t)fapl_id, use_file_locking_val, ignore_when_disabled_val) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1file_1locking */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_use_file_locking + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1use_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id) +{ + hbool_t use_file_locking_val = TRUE; + hbool_t unused = TRUE; + jboolean bval = JNI_FALSE; + + UNUSED(clss); + + if (H5Pget_file_locking((hid_t)fapl_id, &use_file_locking_val, &unused) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (use_file_locking_val == TRUE) ? JNI_TRUE : JNI_FALSE; + +done: + return bval; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1use_1file_1locking */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_ignore_disabled_file_locking + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1ignore_1disabled_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id) +{ + hbool_t ignore_when_disabled_val = TRUE; + hbool_t unused = TRUE; + jboolean bval = JNI_FALSE; + + UNUSED(clss); + + if (H5Pget_file_locking((hid_t)fapl_id, &unused, &ignore_when_disabled_val) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (ignore_when_disabled_val == TRUE) ? JNI_TRUE : JNI_FALSE; + +done: + return bval; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1ignore_1disabled_1file_1locking */ + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Pset_metadata_read_attempts * Signature: (JJ)V */ diff --git a/java/src/jni/h5pFAPLImp.h b/java/src/jni/h5pFAPLImp.h index 25b0eee..3c5988f 100644 --- a/java/src/jni/h5pFAPLImp.h +++ b/java/src/jni/h5pFAPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PFAPL -#define _Included_hdf_hdf5lib_H5_H5PFAPL +#ifndef Included_hdf_hdf5lib_H5_H5PFAPL +#define Included_hdf_hdf5lib_H5_H5PFAPL #include <jni.h> @@ -331,6 +330,32 @@ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close(JNIEnv * /* * Class: hdf_hdf5lib_H5 + * Method: H5Pset_file_locking + * Signature: (JZZ)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id, + jboolean use_file_locking, + jboolean ignore_when_disabled); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_use_file_locking + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1use_1file_1locking(JNIEnv *env, jclass clss, + jlong fapl_id); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_ignore_disabled_file_locking + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1ignore_1disabled_1file_1locking(JNIEnv *env, + jclass clss, + jlong fapl_id); + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Pset_metadata_read_attempts * Signature: (JJ)V */ @@ -451,4 +476,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds(JNIEnv *, jcla } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PFAPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PFAPL */ diff --git a/java/src/jni/h5pFCPLImp.c b/java/src/jni/h5pFCPLImp.c index fe12760..ded3248 100644 --- a/java/src/jni/h5pFCPLImp.c +++ b/java/src/jni/h5pFCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pFCPLImp.h b/java/src/jni/h5pFCPLImp.h index 7799e49..94411d6 100644 --- a/java/src/jni/h5pFCPLImp.h +++ b/java/src/jni/h5pFCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PFCPL -#define _Included_hdf_hdf5lib_H5_H5PFCPL +#ifndef Included_hdf_hdf5lib_H5_H5PFCPL +#define Included_hdf_hdf5lib_H5_H5PFCPL #include <jni.h> @@ -171,4 +170,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change(J } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PFCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PFCPL */ diff --git a/java/src/jni/h5pGAPLImp.c b/java/src/jni/h5pGAPLImp.c index c43609d..b92e180 100644 --- a/java/src/jni/h5pGAPLImp.c +++ b/java/src/jni/h5pGAPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pGAPLImp.h b/java/src/jni/h5pGAPLImp.h index db95f5d..9091ff8 100644 --- a/java/src/jni/h5pGAPLImp.h +++ b/java/src/jni/h5pGAPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PGAPL -#define _Included_hdf_hdf5lib_H5_H5PGAPL +#ifndef Included_hdf_hdf5lib_H5_H5PGAPL +#define Included_hdf_hdf5lib_H5_H5PGAPL #include <jni.h> @@ -24,4 +23,4 @@ extern "C" { } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PGAPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PGAPL */ diff --git a/java/src/jni/h5pGCPLImp.c b/java/src/jni/h5pGCPLImp.c index 46d102f..2ba140d 100644 --- a/java/src/jni/h5pGCPLImp.c +++ b/java/src/jni/h5pGCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pGCPLImp.h b/java/src/jni/h5pGCPLImp.h index a1b8b28..5090c3a 100644 --- a/java/src/jni/h5pGCPLImp.h +++ b/java/src/jni/h5pGCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PGCPL -#define _Included_hdf_hdf5lib_H5_H5PGCPL +#ifndef Included_hdf_hdf5lib_H5_H5PGCPL +#define Included_hdf_hdf5lib_H5_H5PGCPL #include <jni.h> @@ -80,4 +79,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change(JNIEnv *, } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PGCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PGCPL */ diff --git a/java/src/jni/h5pImp.h b/java/src/jni/h5pImp.h index 49d36a6..189e9d7 100644 --- a/java/src/jni/h5pImp.h +++ b/java/src/jni/h5pImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -13,8 +12,8 @@ /* Header for class hdf_hdf5lib_H5_H5_H5P */ -#ifndef _Included_hdf_hdf5lib_H5_H5P -#define _Included_hdf_hdf5lib_H5_H5P +#ifndef Included_hdf_hdf5lib_H5_H5P +#define Included_hdf_hdf5lib_H5_H5P #include <jni.h> @@ -211,4 +210,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Pclose_1class(JNIEnv *, jclass, j } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5P */ +#endif /* Included_hdf_hdf5lib_H5_H5P */ diff --git a/java/src/jni/h5pLAPLImp.c b/java/src/jni/h5pLAPLImp.c index 8b5afa2..1db495c 100644 --- a/java/src/jni/h5pLAPLImp.c +++ b/java/src/jni/h5pLAPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pLAPLImp.h b/java/src/jni/h5pLAPLImp.h index 204901d..8ddc8d2 100644 --- a/java/src/jni/h5pLAPLImp.h +++ b/java/src/jni/h5pLAPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PLAPL -#define _Included_hdf_hdf5lib_H5_H5PLAPL +#ifndef Included_hdf_hdf5lib_H5_H5PLAPL +#define Included_hdf_hdf5lib_H5_H5PLAPL #include <jni.h> @@ -88,4 +87,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags(JNIEnv *, j } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PLAPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PLAPL */ diff --git a/java/src/jni/h5pLCPLImp.c b/java/src/jni/h5pLCPLImp.c index 455936b..b5eebd1 100644 --- a/java/src/jni/h5pLCPLImp.c +++ b/java/src/jni/h5pLCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pLCPLImp.h b/java/src/jni/h5pLCPLImp.h index b744815..4cdf6cd 100644 --- a/java/src/jni/h5pLCPLImp.h +++ b/java/src/jni/h5pLCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PLCPL -#define _Included_hdf_hdf5lib_H5_H5PLCPL +#ifndef Included_hdf_hdf5lib_H5_H5PLCPL +#define Included_hdf_hdf5lib_H5_H5PLCPL #include <jni.h> @@ -24,4 +23,4 @@ extern "C" { } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PLCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PLCPL */ diff --git a/java/src/jni/h5pOCPLImp.c b/java/src/jni/h5pOCPLImp.c index 6cf62d7..bdcba46 100644 --- a/java/src/jni/h5pOCPLImp.c +++ b/java/src/jni/h5pOCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pOCPLImp.h b/java/src/jni/h5pOCPLImp.h index ccc4c78..94d397b 100644 --- a/java/src/jni/h5pOCPLImp.h +++ b/java/src/jni/h5pOCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5POCPL -#define _Included_hdf_hdf5lib_H5_H5POCPL +#ifndef Included_hdf_hdf5lib_H5_H5POCPL +#define Included_hdf_hdf5lib_H5_H5POCPL #include <jni.h> @@ -81,4 +80,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order(JNIEnv } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5POCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5POCPL */ diff --git a/java/src/jni/h5pOCpyPLImp.c b/java/src/jni/h5pOCpyPLImp.c index 9cf18fd..b525b68 100644 --- a/java/src/jni/h5pOCpyPLImp.c +++ b/java/src/jni/h5pOCpyPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pOCpyPLImp.h b/java/src/jni/h5pOCpyPLImp.h index 82369b3..50ee972 100644 --- a/java/src/jni/h5pOCpyPLImp.h +++ b/java/src/jni/h5pOCpyPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5POCpyPL -#define _Included_hdf_hdf5lib_H5_H5POCpyPL +#ifndef Included_hdf_hdf5lib_H5_H5POCpyPL +#define Included_hdf_hdf5lib_H5_H5POCpyPL #include <jni.h> @@ -54,4 +53,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1copy_1object(JNIEnv *, jclass } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5POCpyPL */ +#endif /* Included_hdf_hdf5lib_H5_H5POCpyPL */ diff --git a/java/src/jni/h5pStrCPLImp.c b/java/src/jni/h5pStrCPLImp.c index 33dbdd7..a056e3a 100644 --- a/java/src/jni/h5pStrCPLImp.c +++ b/java/src/jni/h5pStrCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pStrCPLImp.h b/java/src/jni/h5pStrCPLImp.h index 01cde89..c0a7ec2 100644 --- a/java/src/jni/h5pStrCPLImp.h +++ b/java/src/jni/h5pStrCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -11,8 +10,8 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PStrCPL -#define _Included_hdf_hdf5lib_H5_H5PStrCPL +#ifndef Included_hdf_hdf5lib_H5_H5PStrCPL +#define Included_hdf_hdf5lib_H5_H5PStrCPL #include <jni.h> @@ -38,4 +37,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding(JNIEnv *, jcla } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PStrCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PStrCPL */ diff --git a/java/src/jni/h5plImp.c b/java/src/jni/h5plImp.c index bef1242..9193028 100644 --- a/java/src/jni/h5plImp.c +++ b/java/src/jni/h5plImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5plImp.h b/java/src/jni/h5plImp.h index 228d512..410a34f 100644 --- a/java/src/jni/h5plImp.h +++ b/java/src/jni/h5plImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5PL */ -#ifndef _Included_hdf_hdf5lib_H5_H5PL -#define _Included_hdf_hdf5lib_H5_H5PL +#ifndef Included_hdf_hdf5lib_H5_H5PL +#define Included_hdf_hdf5lib_H5_H5PL #ifdef __cplusplus extern "C" { @@ -88,4 +87,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5PLsize(JNIEnv *, jclass); } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PL */ +#endif /* Included_hdf_hdf5lib_H5_H5PL */ diff --git a/java/src/jni/h5rImp.h b/java/src/jni/h5rImp.h index 94e7911..cdfdd8e 100644 --- a/java/src/jni/h5rImp.h +++ b/java/src/jni/h5rImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5R */ -#ifndef _Included_hdf_hdf5lib_H5_H5R -#define _Included_hdf_hdf5lib_H5_H5R +#ifndef Included_hdf_hdf5lib_H5_H5R +#define Included_hdf_hdf5lib_H5_H5R #ifdef __cplusplus extern "C" { @@ -175,4 +174,4 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Rget_1name(JNIEnv *, jclass, jlong } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5R */ +#endif /* Included_hdf_hdf5lib_H5_H5R */ diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c index cbce1ea..c3a8460 100644 --- a/java/src/jni/h5sImp.c +++ b/java/src/jni/h5sImp.c @@ -1340,6 +1340,389 @@ done: return; } /* end Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab */ +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_copy + * Signature: (JJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1copy(JNIEnv *env, jclass clss, jlong dst_id, jlong src_id) +{ + herr_t status = FAIL; + + UNUSED(clss); + + if ((status = H5Sselect_copy((hid_t)dst_id, (hid_t)src_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1copy */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_shape_same + * Signature: (JJ)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same(JNIEnv *env, jclass clss, jlong space1_id, jlong space2_id) +{ + htri_t bval = JNI_FALSE; + + UNUSED(clss); + + if ((bval = H5Sselect_shape_same((hid_t)space1_id, (hid_t)space2_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; + +done: + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_adjust + * Signature: (J[J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *env, jclass clss, jlong space_id, jlongArray offset) +{ + jboolean isCopy; + hssize_t *offst = NULL; + jlong * offsetP = NULL; + jsize offset_rank = -1; + int i, rank = -1; + herr_t status = FAIL; + + UNUSED(clss); + + if (space_id < 0) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: invalid dataspace ID"); + + if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == offset) { + offsetP = NULL; + offst = (hssize_t *)offsetP; + } + else { + if ((offset_rank = ENVPTR->GetArrayLength(ENVONLY, offset)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: offset length < 0"); + } + + if (offset_rank != rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: offset rank doesn't match dataspace rank!"); + + PIN_LONG_ARRAY(ENVONLY, offset, offsetP, &isCopy, "H5Sselect_adjust: offset not pinned"); + + if (NULL == (offst = (hssize_t *)HDmalloc((size_t)offset_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_adjust: failed to allocate offset buffer"); + } + + if ((status = H5Sselect_adjust(space_id, (hssize_t *)offst)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + for (i = 0; i < offset_rank; i++) { + offsetP[i] = (jlong)offst[i]; + } /* end for */ + +done: + if (offst) + HDfree(offst); + if (offsetP) + UNPIN_LONG_ARRAY(ENVONLY, offset, offsetP, (status < 0) ? JNI_ABORT : 0); + + return; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1adjust */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_intersect_block + * Signature: (J[J[J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *env, jclass clss, jlong space_id, jlongArray start, + jlongArray end) +{ + htri_t bval = JNI_FALSE; + jboolean isCopy; + hsize_t *strt = NULL, *nd = NULL; + jlong * startP = NULL, *endP = NULL; + jsize start_rank = -1, end_rank = -1; + int i, rank = -1; + + UNUSED(clss); + + if (space_id < 0) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: invalid dataspace ID"); + + if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == start) { + startP = NULL; + strt = (hsize_t *)startP; + } + else { + if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: start length < 0"); + } + + if (start_rank != rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Sselect_intersect_block: start rank doesn't match dataspace rank!"); + + PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_intersect_block: start not pinned"); + + if (NULL == (strt = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate start buffer"); + } + + if (NULL == end) { + endP = NULL; + nd = (hsize_t *)endP; + } + else { + if ((end_rank = ENVPTR->GetArrayLength(ENVONLY, end)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: end array length < 0"); + } + + if (end_rank != rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Sselect_intersect_block: end rank doesn't match dataspace rank!"); + + PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sselect_intersect_block: end not pinned"); + + if (NULL == (nd = (hsize_t *)HDmalloc((size_t)end_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate end buffer"); + } + + if ((bval = H5Sselect_intersect_block(space_id, (hsize_t *)strt, (hsize_t *)nd)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; + + for (i = 0; i < start_rank; i++) { + startP[i] = (jlong)strt[i]; + endP[i] = (jlong)nd[i]; + } /* end for */ + +done: + if (strt) + HDfree(strt); + if (startP) + UNPIN_LONG_ARRAY(ENVONLY, start, startP, (bval < 0) ? JNI_ABORT : 0); + if (nd) + HDfree(nd); + if (endP) + UNPIN_LONG_ARRAY(ENVONLY, end, endP, (bval < 0) ? JNI_ABORT : 0); + + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_project_intersection + * Signature: (JJJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection(JNIEnv *env, jclass clss, jlong src_space_id, + jlong dst_space_id, jlong src_intersect_space_id) +{ + hid_t sid = H5I_INVALID_HID; + + UNUSED(clss); + + if ((sid = H5Sselect_project_intersection(src_space_id, dst_space_id, src_intersect_space_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + + return (jlong)sid; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Scombine_hyperslab + * Signature: (JI[J[J[J[J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start, + jlongArray stride, jlongArray count, jlongArray block) +{ + jboolean isCopy; + hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; + hsize_t *lp = NULL; + jlong * startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; + jlong * jlp = NULL; + jsize start_rank, stride_rank, count_rank, block_rank; + int i; + hid_t sid = H5I_INVALID_HID; + + UNUSED(clss); + + if (NULL == start) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: start is NULL"); + if (NULL == count) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count is NULL"); + + if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: start array length < 0"); + } + if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count array length < 0"); + } + + if (start_rank != count_rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count and start have different rank!"); + + PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Scombine_hyperslab: start not pinned"); + + if (NULL == (strt = lp = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate start buffer"); + + jlp = (jlong *)startP; + for (i = 0; i < start_rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end if */ + + PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Scombine_hyperslab: count not pinned"); + + if (NULL == (cnt = lp = (hsize_t *)HDmalloc((size_t)count_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate count buffer"); + + jlp = (jlong *)countP; + for (i = 0; i < count_rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end if */ + + if (NULL == stride) { + strideP = NULL; + strd = (hsize_t *)strideP; + } + else { + if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: stride array length < 0"); + } + + if (stride_rank != start_rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: stride and start have different rank!"); + + PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Scombine_hyperslab: stride not pinned"); + + if (NULL == (strd = lp = (hsize_t *)HDmalloc((size_t)stride_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate stride buffer"); + + jlp = (jlong *)strideP; + for (i = 0; i < stride_rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end if */ + } + + if (NULL == block) { + blockP = NULL; + blk = (hsize_t *)blockP; + } + else { + if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: block array length < 0"); + } + + if (block_rank != start_rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: block and start have different rank!"); + + PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Scombine_hyperslab: block not pinned"); + + if (NULL == (blk = lp = (hsize_t *)HDmalloc((size_t)block_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate block buffer"); + + jlp = (jlong *)blockP; + for (i = 0; i < block_rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end for */ + } + + if ((sid = H5Scombine_hyperslab(space_id, (H5S_seloper_t)op, (const hsize_t *)strt, (const hsize_t *)strd, + (const hsize_t *)cnt, (const hsize_t *)blk)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + if (blk) + HDfree(blk); + if (blockP) + UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT); + if (strd) + HDfree(strd); + if (strideP) + UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT); + if (cnt) + HDfree(cnt); + if (countP) + UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT); + if (strt) + HDfree(strt); + if (startP) + UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT); + + return (jlong)sid; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Smodify_select + * Signature: (JIJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Smodify_1select(JNIEnv *env, jclass clss, jlong space1_id, jint op, jlong space2_id) +{ + herr_t status = FAIL; + + UNUSED(clss); + + if ((status = H5Smodify_select((hid_t)space1_id, (H5S_seloper_t)op, (hid_t)space2_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return; +} /* end Java_hdf_hdf5lib_H5_H5Smodify_1select */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Scombine_select + * Signature: (JIJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Scombine_1select(JNIEnv *env, jclass clss, jlong space1_id, jint op, jlong space2_id) +{ + hid_t sid = H5I_INVALID_HID; + + UNUSED(clss); + + if ((sid = H5Scombine_select((hid_t)space1_id, (H5S_seloper_t)op, (hid_t)space2_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + + return (jlong)sid; +} /* end Java_hdf_hdf5lib_H5_H5Scombine_1select */ + #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5sImp.h b/java/src/jni/h5sImp.h index aa8fc60..a758d5a 100644 --- a/java/src/jni/h5sImp.h +++ b/java/src/jni/h5sImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5S */ -#ifndef _Included_hdf_hdf5lib_H5_H5S -#define _Included_hdf_hdf5lib_H5_H5S +#ifndef Included_hdf_hdf5lib_H5_H5S +#define Included_hdf_hdf5lib_H5_H5S #ifdef __cplusplus extern "C" { @@ -259,8 +258,67 @@ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab(JNIEnv JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *, jclass, jlong, jlongArray, jlongArray, jlongArray, jlongArray); +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_copy + * Signature: (JJ)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1copy(JNIEnv *, jclass, jlong, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_shape_same + * Signature: (JJ)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same(JNIEnv *, jclass, jlong, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_adjust + * Signature: (J[J)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *, jclass, jlong, jlongArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_intersect_block + * Signature: (J[J[J)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *, jclass, jlong, + jlongArray, jlongArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_project_intersection + * Signature: (JJJ)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection(JNIEnv *, jclass, jlong, jlong, + jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Scombine_hyperslab + * Signature: (JI[J[J[J[J)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *, jclass, jlong, jint, jlongArray, + jlongArray, jlongArray, jlongArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Smodify_select + * Signature: (JIJ)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Smodify_1select(JNIEnv *, jclass, jlong, jint, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Scombine_select + * Signature: (JIJ)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Scombine_1select(JNIEnv *, jclass, jlong, jint, jlong); + #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5S */ +#endif /* Included_hdf_hdf5lib_H5_H5S */ diff --git a/java/src/jni/h5tImp.h b/java/src/jni/h5tImp.h index 3769cf3..e671456 100644 --- a/java/src/jni/h5tImp.h +++ b/java/src/jni/h5tImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5T */ -#ifndef _Included_hdf_hdf5lib_H5_H5T -#define _Included_hdf_hdf5lib_H5_H5T +#ifndef Included_hdf_hdf5lib_H5_H5T +#define Included_hdf_hdf5lib_H5_H5T #ifdef __cplusplus extern "C" { @@ -506,4 +505,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Trefresh(JNIEnv *, jclass, jlong); } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5T */ +#endif /* Included_hdf_hdf5lib_H5_H5T */ diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c index 3d47fde..6281481 100644 --- a/java/src/jni/h5util.c +++ b/java/src/jni/h5util.c @@ -28,8 +28,6 @@ extern "C" { #include "hdf5.h" #include "h5util.h" -#define SKIP_UNUSED_DUMP_ROUTINES - /* size of hyperslab buffer when a dataset is bigger than H5TOOLS_MALLOCSIZE */ hsize_t H5TOOLS_BUFSIZE = (32 * 1024 * 1024); /* 32 MB */ int H5TOOLS_TEXT_BLOCK = 16; /* Number of elements on a line in a text export file */ @@ -54,18 +52,21 @@ void * edata; /* Local Prototypes */ /********************/ -#ifndef SKIP_UNUSED_DUMP_ROUTINES -static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -#endif +int h5str_region_dataset(JNIEnv *env, h5str_t *out_str, H5R_ref_t *ref_vp, int expand_data); + +static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj, + int expand_data); +static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj, + int expand_data); +static int h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id); static int h5str_is_zero(const void *_mem, size_t size); static hid_t h5str_get_native_type(hid_t type); static hid_t h5str_get_little_endian_type(hid_t type); static hid_t h5str_get_big_endian_type(hid_t type); static htri_t h5str_detect_vlen(hid_t tid); static htri_t h5str_detect_vlen_str(hid_t tid); -static int h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, - hsize_t nelmts); +static int h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, + hsize_t nelmts); static int h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts); static int render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, hid_t container, int ndims, @@ -185,13 +186,14 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_ H5T_class_t tclass = H5T_NO_CLASS; const char delimiter[] = " ," H5_COMPOUND_BEGIN_INDICATOR H5_COMPOUND_END_INDICATOR H5_ARRAY_BEGIN_INDICATOR H5_ARRAY_END_INDICATOR H5_VLEN_BEGIN_INDICATOR H5_VLEN_END_INDICATOR; - size_t typeSize = 0; - hid_t mtid = H5I_INVALID_HID; - char * this_str = NULL; - char * token; - char * cptr = NULL; - int n; - size_t retVal = 0; + + size_t retVal = 0; + size_t typeSize = 0; + hid_t mtid = H5I_INVALID_HID; + char * this_str = NULL; + char * cptr = NULL; + char * token; + int n; if (!in_str) H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: in_str is NULL"); @@ -239,7 +241,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_ case sizeof(long double): { long double tmp_ldouble = 0.0; - sscanf(token, "%Lf", &tmp_ldouble); + sscanf(token, "%Lg", &tmp_ldouble); HDmemcpy(cptr, &tmp_ldouble, sizeof(long double)); break; } @@ -644,27 +646,27 @@ done: * * Purpose: Object reference -- show the name of the referenced object. * - * Return: Nothing + * Return: SUCCEED or FAIL *------------------------------------------------------------------------- */ -void -h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref_p) +int +h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p) { - ssize_t buf_size; - char * ref_name = NULL; - const H5R_ref_t *ref_vp = (H5R_ref_t *)ref_p; + ssize_t buf_size; + char * ref_name = NULL; + H5R_ref_t *ref_vp = (H5R_ref_t *)ref_p; - UNUSED(container); + int ret_value = FAIL; if (!h5str_append(out_str, " \"")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); buf_size = H5Rget_file_name(ref_vp, NULL, 0); if (buf_size) { ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); if (H5Rget_file_name(ref_vp, ref_name, buf_size + 1) >= 0) { ref_name[buf_size] = '\0'; if (!h5str_append(out_str, ref_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } HDfree(ref_name); ref_name = NULL; @@ -676,7 +678,7 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, ref_name, buf_size + 1) >= 0) { ref_name[buf_size] = '\0'; if (!h5str_append(out_str, ref_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } HDfree(ref_name); ref_name = NULL; @@ -689,17 +691,61 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref if (H5Rget_attr_name(ref_vp, ref_name, buf_size + 1) >= 0) { ref_name[buf_size] = '\0'; if (!h5str_append(out_str, ref_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } HDfree(ref_name); ref_name = NULL; } } if (!h5str_append(out_str, "\"")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + + ret_value = SUCCEED; done: if (ref_name) HDfree(ref_name); + + return ret_value; +} /* h5str_sprint_reference */ + +int +h5str_region_dataset(JNIEnv *env, h5str_t *out_str, H5R_ref_t *ref_vp, int expand_data) +{ + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; + H5S_sel_type region_type; + + int ret_value = FAIL; + + if ((new_obj_id = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) < 0) { + ret_value = SUCCEED; /* An uncreated region is a valid state */ + goto done; + } + + if ((new_obj_sid = H5Ropen_region(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if ((region_type = H5Sget_select_type(new_obj_sid)) > H5S_SEL_ERROR) { + if (H5S_SEL_POINTS == region_type) { + if (h5str_dump_region_points(ENVONLY, out_str, new_obj_sid, new_obj_id, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else if (H5S_SEL_HYPERSLABS == region_type) { + if (h5str_dump_region_blocks(ENVONLY, out_str, new_obj_sid, new_obj_id, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + } + + ret_value = SUCCEED; +done: + if (new_obj_sid >= 0) + if (H5Sclose(new_obj_sid) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (new_obj_id >= 0) + if (H5Dclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + return ret_value; } /* @@ -710,8 +756,7 @@ done: * FAILURE: 0 */ size_t -h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, - int expand_data) +h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, int expand_data) { unsigned char *ucptr = (unsigned char *)in_buf; static char fmt_llong[8], fmt_ullong[8]; @@ -719,7 +764,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i size_t typeSize = 0; H5T_sign_t nsign = H5T_SGN_ERROR; hid_t mtid = H5I_INVALID_HID; - hid_t obj = H5I_INVALID_HID; char * cptr = (char *)in_buf; char * this_str = NULL; int n; @@ -734,8 +778,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i H5_LIBRARY_ERROR(ENVONLY); if (!(typeSize = H5Tget_size(tid))) H5_LIBRARY_ERROR(ENVONLY); - if (!(nsign = H5Tget_sign(tid))) - H5_LIBRARY_ERROR(ENVONLY); /* Build default formats for long long types */ if (!fmt_llong[0]) { @@ -744,7 +786,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%%su", H5_PRINTF_LL_WIDTH) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } /* end if */ - switch (tclass) { case H5T_FLOAT: { switch (typeSize) { @@ -784,7 +825,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if (NULL == (this_str = (char *)HDmalloc(27))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%Lf", tmp_ldouble) < 0) + if (HDsprintf(this_str, "%Lg", tmp_ldouble) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); break; @@ -805,6 +846,8 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i htri_t is_variable; char * tmp_str; + typeSize = 0; + if ((is_variable = H5Tis_variable_str(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1003,7 +1046,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i H5_LIBRARY_ERROR(ENVONLY); if (!h5str_append(out_str, H5_COMPOUND_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); for (i = 0; i < (unsigned)n; i++) { offset = H5Tget_member_offset(tid, i); @@ -1011,12 +1054,12 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if ((mtid = H5Tget_member_type(tid, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], in_buf_len, expand_data)) + if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if ((i + 1) < (unsigned)n) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1024,7 +1067,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i } if (!h5str_append(out_str, H5_COMPOUND_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); break; } @@ -1034,7 +1077,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) { if (!h5str_append(out_str, enum_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } else { size_t i; @@ -1057,124 +1100,112 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i } case H5T_REFERENCE: { - if (h5str_is_zero(cptr, typeSize)) { - if (!h5str_append(out_str, "NULL")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - } + /* H5T_STD_REF */ + hid_t new_obj_id = H5I_INVALID_HID; + H5O_type_t obj_type = -1; /* Object type */ + H5R_type_t ref_type; /* Reference type */ - if (H5Tequal(tid, H5T_STD_REF)) { - H5O_type_t obj_type = -1; /* Object type */ - H5R_type_t ref_type; /* Reference type */ - const H5R_ref_t *ref_vp = (H5R_ref_t *)cptr; + H5R_ref_t *ref_vp = (H5R_ref_t *)cptr; - ref_type = H5Rget_type(ref_vp); - H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type); + ref_type = H5Rget_type(ref_vp); + if (!h5str_is_zero(ref_vp, H5Tget_size(H5T_STD_REF))) { switch (ref_type) { - case H5R_OBJECT1: { - /* Object references -- show the type and OID of the referenced object. */ - H5O_info2_t oi; - - if ((obj = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - H5Oget_info3(obj, &oi, H5O_INFO_BASIC); - if (H5Oclose(obj) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + case H5R_OBJECT1: + if (H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_DATASET: + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + + case H5O_TYPE_GROUP: + case H5O_TYPE_NAMED_DATATYPE: + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: { + /* Object references -- show the type and OID of the referenced object. */ + H5O_info2_t oi; + char * obj_tok_str = NULL; + if ((new_obj_id = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= + 0) { + H5Oget_info3(new_obj_id, &oi, H5O_INFO_BASIC); + H5Otoken_to_str(new_obj_id, &oi.token, &obj_tok_str); + if (H5Dclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + else + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (this_str = (char *)HDmalloc(14))) + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (HDsprintf(this_str, "%u-", (unsigned)oi.type) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (!h5str_append(out_str, this_str)) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + HDfree(this_str); + this_str = NULL; + + /* Print OID */ + { + char *token_str; + + H5Otoken_to_str(tid, &oi.token, &token_str); + + if (NULL == (this_str = (char *)HDmalloc(64 + strlen(token_str) + 1))) + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (HDsprintf(this_str, "%lu:%s", oi.fileno, token_str) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + + H5free_memory(token_str); + } + } break; + } /* end switch */ } else - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - - if (NULL == (this_str = (char *)HDmalloc(14))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%u-", (unsigned)oi.type) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); - if (!h5str_append(out_str, this_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - HDfree(this_str); - this_str = NULL; - - switch (obj_type) { - case H5O_TYPE_GROUP: - if (!h5str_append(out_str, H5_TOOLS_GROUP)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_DATASET: - if (!h5str_append(out_str, H5_TOOLS_DATASET)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_NAMED_DATATYPE: - if (!h5str_append(out_str, H5_TOOLS_DATATYPE)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - break; - } /* end switch */ - H5Oclose(obj); - h5str_sprint_reference(ENVONLY, out_str, container, ref_vp); - - /* Print OID */ - { - char *token_str; - - H5Otoken_to_str(tid, &oi.token, &token_str); - - if (NULL == (this_str = (char *)HDmalloc(64 + strlen(token_str) + 1))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%lu:%s", oi.fileno, token_str) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); - - H5free_memory(token_str); - } - - } - - break; + H5_LIBRARY_ERROR(ENVONLY); + break; case H5R_DATASET_REGION1: - if (!h5str_append(out_str, H5_TOOLS_DATASET)) + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr); break; case H5R_OBJECT2: - switch (obj_type) { - case H5O_TYPE_GROUP: - if (!h5str_append(out_str, H5_TOOLS_GROUP)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_DATASET: - if (!h5str_append(out_str, H5_TOOLS_DATASET)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_NAMED_DATATYPE: - if (!h5str_append(out_str, H5_TOOLS_DATATYPE)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - break; - } /* end switch */ - h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr); + if (H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_GROUP: + break; + + case H5O_TYPE_DATASET: + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + + case H5O_TYPE_NAMED_DATATYPE: + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5_ASSERTION_ERROR(ENVONLY, "h5str_sprintf: H5R_OBJECT2 failed"); break; case H5R_DATASET_REGION2: - if (!h5str_append(out_str, H5_TOOLS_DATASET)) + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr); break; case H5R_ATTR: - if (!h5str_append(out_str, H5_TOOLS_ATTRIBUTE)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr); + if ((new_obj_id = H5Ropen_attr(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (h5str_dump_region_attribute(ENVONLY, out_str, new_obj_id) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if (H5Aclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } break; case H5R_BADTYPE: case H5R_MAXTYPE: @@ -1182,14 +1213,9 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i break; } /* end switch */ } - else if (H5Tequal(tid, H5T_STD_REF_DSETREG)) { - /* (H5R_DSET_REG_REF_BUF_SIZE == typeSize) */ - H5_LIBRARY_ERROR(ENVONLY); - } - else if (H5Tequal(tid, H5T_STD_REF_OBJ)) { - /* (H5R_OBJ_REF_BUF_SIZE == typeSize) */ + + if (H5Rdestroy(ref_vp) < 0) H5_LIBRARY_ERROR(ENVONLY); - } break; } @@ -1200,7 +1226,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i int rank = 0; if (!h5str_append(out_str, H5_ARRAY_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if ((mtid = H5Tget_super(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1218,17 +1244,16 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i total_elmts *= dims[i]; for (i = 0; i < total_elmts; i++) { - if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), in_buf_len, - expand_data)) + if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if ((i + 1) < total_elmts) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } if (!h5str_append(out_str, H5_ARRAY_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1249,20 +1274,20 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i H5_LIBRARY_ERROR(ENVONLY); if (!h5str_append(out_str, H5_VLEN_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); for (i = 0; i < (unsigned)vl_buf->len; i++) { if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(((char *)vl_buf->p)[i * baseSize]), - vl_buf->len, expand_data)) + expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if ((i + 1) < (unsigned)vl_buf->len) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } if (!h5str_append(out_str, H5_VLEN_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1304,7 +1329,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if (this_str) { if (!h5str_append(out_str, this_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); HDfree(this_str); this_str = NULL; @@ -1405,12 +1430,12 @@ h5str_print_region_data_blocks(JNIEnv *env, hid_t region_id, h5str_t *str, int n for (numindex = 0; numindex < numelem; numindex++) { if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + numindex * type_size), - 0, 1)) + 1)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (numindex + 1 < numelem) if (!h5str_append(str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */ } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */ @@ -1434,7 +1459,7 @@ done: } /* end h5str_print_region_data_blocks */ int -h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) +h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t region_id, int expand_data) { hssize_t nblocks; hsize_t alloc_size; @@ -1443,32 +1468,34 @@ h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t reg hid_t type_id = H5I_INVALID_HID; int ndims = -1; int ret_value = FAIL; + int i; + char tmp_str[256]; /* * This function fails if the region does not have blocks. */ H5E_BEGIN_TRY { - nblocks = H5Sget_select_hyper_nblocks(region); + nblocks = H5Sget_select_hyper_nblocks(region_space); } H5E_END_TRY; - if (nblocks < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) + if (nblocks <= 0) { + ret_value = SUCCEED; + goto done; + } + if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Print block information */ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t)alloc_size)) { - if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_dump_region_blocks_data: failed to allocate region block buffer"); + if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer"); - if (H5Sget_select_hyper_blocklist(region, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (expand_data) { if ((dtype = H5Dget_type(region_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1477,69 +1504,19 @@ h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t reg if (h5str_print_region_data_blocks(ENVONLY, region_id, str, ndims, type_id, nblocks, ptdata) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */ - - ret_value = SUCCEED; - -done: - if (type_id >= 0) - H5Tclose(type_id); - if (dtype >= 0) - H5Tclose(dtype); - if (ptdata) - HDfree(ptdata); - - return ret_value; -} /* end h5str_dump_region_blocks_data */ - -#ifndef SKIP_UNUSED_DUMP_ROUTINES -static int -h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) -{ - hssize_t nblocks; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - char tmp_str[256]; - int ndims = -1; - int ret_value = FAIL; - - UNUSED(region_id); - - /* - * This function fails if the region does not have blocks. - */ - H5E_BEGIN_TRY - { - nblocks = H5Sget_select_hyper_nblocks(region); } - H5E_END_TRY; - - if (nblocks < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - /* Print block information */ - alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t)alloc_size)) { - int i; - - if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_dump_region_blocks: failed to allocate region block buffer"); - - if (H5Sget_select_hyper_blocklist(region, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + else { + if (!h5str_append(str, " REGION_TYPE BLOCK")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if (!h5str_append(str, " {")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); for (i = 0; i < nblocks; i++) { int j; if (!h5str_append(str, " ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); /* Start coordinates and opposite corner */ for (j = 0; j < ndims; j++) { @@ -1549,7 +1526,7 @@ h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_i H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure"); if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } for (j = 0; j < ndims; j++) { @@ -1560,28 +1537,30 @@ h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_i H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure"); if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } if (!h5str_append(str, ") ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); tmp_str[0] = '\0'; } if (!h5str_append(str, " }")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */ - + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } ret_value = SUCCEED; done: + if (type_id >= 0) + H5Tclose(type_id); + if (dtype >= 0) + H5Tclose(dtype); if (ptdata) HDfree(ptdata); return ret_value; } /* end h5str_dump_region_blocks */ -#endif /*------------------------------------------------------------------------- * Purpose: Print the data values from a dataset referenced by region points. @@ -1634,12 +1613,12 @@ h5str_print_region_data_points(JNIEnv *env, hid_t region_space, hid_t region_id, if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 0, 1)) + if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 1)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (jndx + 1 < (size_t)npoints) if (!h5str_append(str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */ ret_value = SUCCEED; @@ -1656,146 +1635,96 @@ done: } /* end h5str_print_region_data_points */ int -h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) +h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t region_id, int expand_data) { - hssize_t npoints; hsize_t alloc_size; + hssize_t npoints = -1; hsize_t *ptdata = NULL; hid_t dtype = H5I_INVALID_HID; hid_t type_id = H5I_INVALID_HID; int ndims = -1; int ret_value = FAIL; + int i; + char tmp_str[256]; /* * This function fails if the region does not have points. */ H5E_BEGIN_TRY { - npoints = H5Sget_select_elem_npoints(region); + npoints = H5Sget_select_elem_npoints(region_space); } H5E_END_TRY; - if (npoints < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) + if (npoints <= 0) { + ret_value = SUCCEED; + goto done; + } + if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Print point information */ - if (npoints > 0) { - alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t)alloc_size)) { - if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR( - ENVONLY, "h5str_dump_region_points_data: failed to allocate region point data buffer"); - - if (H5Sget_select_elem_pointlist(region, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((dtype = H5Dget_type(region_id)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (h5str_print_region_data_points(ENVONLY, region, region_id, str, ndims, type_id, npoints, - ptdata) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - } - - ret_value = SUCCEED; - -done: - if (type_id >= 0) - H5Tclose(type_id); - if (dtype >= 0) - H5Tclose(dtype); - if (ptdata) - HDfree(ptdata); - - return ret_value; -} /* end h5str_dump_region_points_data */ - -#ifndef SKIP_UNUSED_DUMP_ROUTINES -static int -h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) -{ - hssize_t npoints; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - char tmp_str[256]; - int ndims = -1; - int ret_value = FAIL; - - UNUSED(region_id); - - /* - * This function fails if the region does not have points. - */ - H5E_BEGIN_TRY - { - npoints = H5Sget_select_elem_npoints(region); - } - H5E_END_TRY; - - if (npoints < 0) - H5_LIBRARY_ERROR(ENVONLY); + alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); + if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_dump_region_points: failed to allocate region point data buffer"); - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) + if (H5Sget_select_elem_pointlist(region_space, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) H5_LIBRARY_ERROR(ENVONLY); - /* Print point information */ - if (npoints > 0) { - int i; - - alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t)alloc_size)) { - if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_dump_region_points: failed to allocate region point buffer"); + if (expand_data) { + if ((dtype = H5Dget_type(region_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (H5Sget_select_elem_pointlist(region, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_append(str, " {")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if (h5str_print_region_data_points(ENVONLY, region_space, region_id, str, ndims, type_id, npoints, + ptdata) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (!h5str_append(str, " REGION_TYPE POINT")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); - for (i = 0; i < npoints; i++) { - int j; + if (!h5str_append(str, " {")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); - if (!h5str_append(str, " ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + for (i = 0; i < npoints; i++) { + int j; - for (j = 0; j < ndims; j++) { - tmp_str[0] = '\0'; + if (!h5str_append(str, " ")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); - if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", (unsigned long)(ptdata[i * ndims + j])) < - 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure"); + for (j = 0; j < ndims; j++) { + tmp_str[0] = '\0'; - if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end for (j = 0; j < ndims; j++) */ + if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", (unsigned long)(ptdata[i * ndims + j])) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure"); - if (!h5str_append(str, ") ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end for (i = 0; i < npoints; i++) */ + if (!h5str_append(str, tmp_str)) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } /* end for (j = 0; j < ndims; j++) */ - if (!h5str_append(str, " }")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end if (alloc_size == (hsize_t)((size_t) alloc_size)) */ - } /* end if (npoints > 0) */ + if (!h5str_append(str, ") ")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } /* end for (i = 0; i < npoints; i++) */ + if (!h5str_append(str, " }")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } ret_value = SUCCEED; done: + if (type_id >= 0) + H5Tclose(type_id); + if (dtype >= 0) + H5Tclose(dtype); if (ptdata) HDfree(ptdata); return ret_value; } /* end h5str_dump_region_points */ -#endif static int h5str_is_zero(const void *_mem, size_t size) @@ -2312,47 +2241,31 @@ h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hs } case H5T_REFERENCE: { - if (H5Tequal(tid, H5T_STD_REF)) { - hid_t region_id = H5I_INVALID_HID; - hid_t region_space = H5I_INVALID_HID; - H5S_sel_type region_type; - - /* Region data */ - for (block_index = 0; block_index < block_nelmts; block_index++) { - mem = ((unsigned char *)_mem) + block_index * size; - if ((region_id = H5Ropen_object((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) < 0) - continue; - else { - if ((region_space = - H5Ropen_region((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - if (!h5str_is_zero(mem, H5Tget_size(H5T_STD_REF))) { - region_type = H5Sget_select_type(region_space); - if (region_type == H5S_SEL_POINTS) - ret_value = render_bin_output_region_points(stream, region_space, - region_id, container); - else - ret_value = render_bin_output_region_blocks(stream, region_space, - region_id, container); - } - H5Sclose(region_space); - } /* end if (region_space >= 0) */ - H5Dclose(region_id); - } + hid_t region_id = H5I_INVALID_HID; + hid_t region_space = H5I_INVALID_HID; + H5S_sel_type region_type; - if ((region_type = H5Sget_select_type(region_space)) < 0) { - H5Sclose(region_space); - H5Dclose(region_id); - continue; + /* Region data */ + for (block_index = 0; block_index < block_nelmts; block_index++) { + mem = ((unsigned char *)_mem) + block_index * size; + if ((region_id = H5Ropen_object((H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) < 0) + continue; + if ((region_space = H5Ropen_region((H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (!h5str_is_zero(mem, H5Tget_size(H5T_STD_REF))) { + region_type = H5Sget_select_type(region_space); + if (region_type == H5S_SEL_POINTS) + ret_value = + render_bin_output_region_points(stream, region_space, region_id, container); + else if (region_type == H5S_SEL_HYPERSLABS) + ret_value = + render_bin_output_region_blocks(stream, region_space, region_id, container); } - if (ret_value < 0) - break; - } - } - else if (H5Tequal(tid, H5T_STD_REF_DSETREG)) { - ; - } - else if (H5Tequal(tid, H5T_STD_REF_OBJ)) { - ; + H5Sclose(region_space); + } /* end if (region_space >= 0) */ + H5Dclose(region_id); + + if (ret_value < 0) + break; } break; @@ -2723,6 +2636,109 @@ done: return ret_value; } /* end render_bin_output_region_points */ +/*------------------------------------------------------------------------- + * Purpose: Print some values from an attribute referenced by object reference. + * + * Parameters Description: + * FILE *buffer is the string into which to render + *------------------------------------------------------------------------- + */ +static int +h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id) +{ + int ret_value = SUCCEED; + hid_t atype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + hid_t region_space = H5I_INVALID_HID; + hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ + size_t i; /* counter */ + size_t size; /* datum size */ + int sndims; /* rank of dataspace */ + hsize_t p_nelmts; /* total selected elmts */ + hsize_t alloc_size; + + unsigned char *buf = NULL; /* buffer for raw data */ + + /* VL data special information */ + unsigned int vl_data = 0; /* contains VL datatypes */ + + if ((region_space = H5Aget_space(region_id)) < 0) { + ret_value = FAIL; + goto done; + } + + if ((sndims = H5Sget_simple_extent_ndims(region_space)) < 0) { + ret_value = FAIL; + goto done; + } + + /* Assume entire data space to be read */ + H5Sget_simple_extent_dims(region_space, total_size, NULL); + p_nelmts = 1; + + for (i = 0; i < sndims; i++) + p_nelmts *= total_size[i]; + + if ((atype = H5Aget_type(region_id)) < 0) { + ret_value = FAIL; + goto done; + } + if ((type_id = H5Tget_native_type(atype, H5T_DIR_DEFAULT)) < 0) { + ret_value = FAIL; + goto done; + } + + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(type_id) == TRUE) + vl_data = TRUE; + + if (!(size = H5Tget_size(type_id))) { + ret_value = FAIL; + goto done; + } + + alloc_size = p_nelmts * size; + HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/ + if (NULL != (buf = (unsigned char *)HDmalloc((size_t)alloc_size))) { + /* Read the data */ + if (H5Aread(region_id, type_id, buf) >= 0) { + + for (i = 0; i < p_nelmts; i++) { + size_t bytes_in = 0; /* # of bytes to write */ + void * memref = buf + i * size; + + if (!(bytes_in = h5str_sprintf(ENVONLY, str, region_id, type_id, memref, 1))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if ((i < p_nelmts - 1) && (bytes_in > 0)) { + if (!h5str_append(str, ", ")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } + } + + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(type_id, region_space, H5P_DEFAULT, buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + } + else + H5_LIBRARY_ERROR(ENVONLY); + } + +done: + if (buf) + HDfree(buf); + if (region_space >= 0) + H5Sclose(region_space); + if (type_id >= 0) + H5Tclose(type_id); + if (atype >= 0) + H5Tclose(type_id); + + return ret_value; +} + int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) { @@ -2739,11 +2755,11 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) size_t p_type_nbytes; /* size of memory type */ /* Stripmine info */ - unsigned char *sm_buf = NULL; /* buffer for raw data */ - hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ - hsize_t sm_nbytes; /* bytes per stripmine */ - hsize_t sm_nelmts; /* elements per stripmine */ - hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ + void * sm_buf = NULL; /* buffer for raw data */ + hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ + hsize_t sm_nbytes; /* bytes per stripmine */ + hsize_t sm_nelmts; /* elements per stripmine */ + hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ /* Hyperslab info */ hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */ @@ -2763,142 +2779,168 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) if ((f_type = H5Dget_type(dset)) < 0) H5_LIBRARY_ERROR(ENVONLY); - switch (binary_order) { - case 1: { - if ((p_type = h5str_get_native_type(f_type)) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if ((f_space = H5Dget_space(dset)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - break; - } + if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - case 2: { - if ((p_type = h5str_get_little_endian_type(f_type)) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); - break; - } + if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) { + p_nelmts = H5Sget_simple_extent_npoints(f_space); + if (NULL == + (sm_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); - case 3: { - if ((p_type = h5str_get_big_endian_type(f_type)) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + /* Read the data */ + if (H5Dread(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); - break; + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, dset, H5T_STD_REF, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } - - default: { - if ((p_type = H5Tcopy(f_type)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - break; + else { + if (h5str_render_bin_output(stream, dset, H5T_STD_REF, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } } + else { + switch (binary_order) { + case 1: { + if ((p_type = h5str_get_native_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if ((f_space = H5Dget_space(dset)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + break; + } - if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + case 2: { + if ((p_type = h5str_get_little_endian_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) { - if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) - H5_LIBRARY_ERROR(ENVONLY); + break; + } - /* Calculate the number of elements we're going to print */ - p_nelmts = 1; + case 3: { + if ((p_type = h5str_get_big_endian_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if (ndims > 0) { - for (i = 0; i < (size_t)ndims; i++) - p_nelmts *= total_size[i]; - } /* end if */ + break; + } + + default: { + if ((p_type = H5Tcopy(f_type)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (p_nelmts > 0) { - /* Check if we have VL data in the dataset's datatype */ - if (h5str_detect_vlen(p_type) != 0) - vl_data = 1; + break; + } + } - /* - * Determine the strip mine size and allocate a buffer. The strip mine is - * a hyperslab whose size is manageable. - */ - if (!(sm_nbytes = p_type_nbytes = H5Tget_size(p_type))) + if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) { + if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) H5_LIBRARY_ERROR(ENVONLY); + /* Calculate the number of elements we're going to print */ + p_nelmts = 1; + if (ndims > 0) { - for (i = (size_t)ndims; i > 0; --i) { - hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; - if (size == 0) /* datum size > H5TOOLS_BUFSIZE */ - size = 1; - sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size)); - sm_nbytes *= sm_size[i - 1]; + for (i = 0; i < (size_t)ndims; i++) + p_nelmts *= total_size[i]; + } /* end if */ + + if (p_nelmts > 0) { + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(p_type) != 0) + vl_data = 1; + + /* + * Determine the strip mine size and allocate a buffer. The strip mine is + * a hyperslab whose size is manageable. + */ + if (!(sm_nbytes = p_type_nbytes = H5Tget_size(p_type))) + H5_LIBRARY_ERROR(ENVONLY); + + if (ndims > 0) { + for (i = (size_t)ndims; i > 0; --i) { + hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; + if (size == 0) /* datum size > H5TOOLS_BUFSIZE */ + size = 1; + sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size)); + sm_nbytes *= sm_size[i - 1]; + } } - } - if (sm_nbytes > 0) { - if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf"); + if (sm_nbytes > 0) { + if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf"); - sm_nelmts = sm_nbytes / p_type_nbytes; + sm_nelmts = sm_nbytes / p_type_nbytes; - if ((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if ((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - /* The stripmine loop */ - HDmemset(hs_offset, 0, sizeof hs_offset); - HDmemset(zero, 0, sizeof zero); - - for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) { - /* Calculate the hyperslab size */ - if (ndims > 0) { - for (i = 0, hs_nelmts = 1; i < (size_t)ndims; i++) { - hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) - ? (total_size[i] - hs_offset[i]) - : (sm_size[i])); - hs_nelmts *= hs_size[i]; - } + /* The stripmine loop */ + HDmemset(hs_offset, 0, sizeof hs_offset); + HDmemset(zero, 0, sizeof zero); + + for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) { + /* Calculate the hyperslab size */ + if (ndims > 0) { + for (i = 0, hs_nelmts = 1; i < (size_t)ndims; i++) { + hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) + ? (total_size[i] - hs_offset[i]) + : (sm_size[i])); + hs_nelmts *= hs_size[i]; + } - if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < + 0) + H5_LIBRARY_ERROR(ENVONLY); - if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0) - H5_LIBRARY_ERROR(ENVONLY); - } - else { - if (H5Sselect_all(f_space) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < + 0) + H5_LIBRARY_ERROR(ENVONLY); + } + else { + if (H5Sselect_all(f_space) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (H5Sselect_all(sm_space) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (H5Sselect_all(sm_space) < 0) + H5_LIBRARY_ERROR(ENVONLY); - hs_nelmts = 1; - } + hs_nelmts = 1; + } - /* Read the data */ - if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) - H5_LIBRARY_ERROR(ENVONLY); + /* Read the data */ + if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (binary_order == 99) { - if (h5tools_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - else { - if (h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } - /* Reclaim any VL memory, if necessary */ - if (vl_data) { - if (H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0) - H5_LIBRARY_ERROR(ENVONLY); - } + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } - /* Calculate the next hyperslab offset */ - for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) { - hs_offset[i - 1] += hs_size[i - 1]; + /* Calculate the next hyperslab offset */ + for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) { + hs_offset[i - 1] += hs_size[i - 1]; - if (hs_offset[i - 1] == total_size[i - 1]) - hs_offset[i - 1] = 0; - else - carry = 0; + if (hs_offset[i - 1] == total_size[i - 1]) + hs_offset[i - 1] = 0; + else + carry = 0; + } } } } @@ -2922,6 +2964,148 @@ done: return ret_value; } /* end h5str_dump_simple_dset */ +int +h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order) +{ + hid_t f_space = H5I_INVALID_HID; /* file data space */ + hsize_t alloc_size; + int ndims; /* rank of dataspace */ + unsigned i; /* counters */ + hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ + hsize_t p_nelmts; /* total selected elmts */ + + void * sm_buf = NULL; /* buffer for raw data */ + hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ + + int ret_value = 0; + + /* VL data special information */ + unsigned int vl_data = 0; /* contains VL datatypes */ + hid_t p_type = H5I_INVALID_HID; + hid_t f_type = H5I_INVALID_HID; + + if (attr_id < 0) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_dump_simple_mem: attr ID < 0"); + + if ((f_type = H5Aget_type(attr_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (H5I_INVALID_HID == (f_space = H5Aget_space(attr_id))) + H5_LIBRARY_ERROR(ENVONLY); + + if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) { + p_nelmts = H5Sget_simple_extent_npoints(f_space); + if (NULL == + (sm_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); + + /* Read the data */ + if (H5Aread(attr_id, H5T_STD_REF, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, attr_id, H5T_STD_REF, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (h5str_render_bin_output(stream, attr_id, H5T_STD_REF, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + } + else { + switch (binary_order) { + case 1: { + if ((p_type = h5str_get_native_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + break; + } + + case 2: { + if ((p_type = h5str_get_little_endian_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + break; + } + + case 3: { + if ((p_type = h5str_get_big_endian_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + break; + } + + default: { + if ((p_type = H5Tcopy(f_type)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + break; + } + } + + if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) { + if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); + /* Calculate the number of elements we're going to print */ + p_nelmts = 1; + + if (ndims > 0) { + for (i = 0; i < (size_t)ndims; i++) + p_nelmts *= total_size[i]; + } /* end if */ + + if (p_nelmts > 0) { + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(p_type) != 0) + vl_data = 1; + + alloc_size = p_nelmts * H5Tget_size(p_type); + if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); + + /* Read the data */ + if (H5Aread(attr_id, p_type, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, attr_id, p_type, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (h5str_render_bin_output(stream, attr_id, p_type, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(p_type, f_space, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + } + } + } + + ret_value = SUCCEED; + +done: + if (sm_buf) + HDfree(sm_buf); + if (f_space >= 0) + H5Sclose(f_space); + if (p_type >= 0) + H5Tclose(p_type); + if (f_type >= 0) + H5Tclose(f_type); + + return ret_value; +} + htri_t H5Tdetect_variable_str(hid_t tid) { @@ -2948,7 +3132,7 @@ H5Tdetect_variable_str(hid_t tid) } /* end H5Tdetect_variable_str */ static int -h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts) +h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts) { unsigned char *mem = (unsigned char *)_mem; h5str_t buffer; /* string into which to render */ @@ -2968,38 +3152,37 @@ h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, h5str_new(&buffer, 32 * size); if (!buffer.s) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5tools_dump_simple_data: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_data: failed to allocate buffer"); - if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 0, 1))) + if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 1))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if (i > 0) { + if ((i > 0) && (bytes_in > 0)) { if (HDfprintf(stream, ", ") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); if (line_count >= H5TOOLS_TEXT_BLOCK) { line_count = 0; if (HDfprintf(stream, "\n") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); } } - if (HDfprintf(stream, "%s", buffer.s) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); h5str_free(&buffer); } /* end for (i = 0; i < nelmts... */ if (HDfprintf(stream, "\n") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); done: if (buffer.s) h5str_free(&buffer); return ret_value; -} /* end h5tools_dump_simple_data */ +} /* end h5str_dump_simple_data */ /* * Utility Java APIs @@ -3053,7 +3236,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex(JNIEnv *env, jclass clss, jlong attr_id, jlon for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) @@ -3554,18 +3737,16 @@ done: /* * Class: hdf_hdf5lib_H5 * Method: H5export_dataset - * Signature: (Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;I)V + * Signature: (Ljava/lang/String;JLjava/lang/String;I)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *env, jclass clss, jstring file_export_name, jstring file_name, +Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *env, jclass clss, jstring file_export_name, jlong file_id, jstring object_path, jint binary_order) { const char *file_export = NULL; const char *object_name = NULL; - const char *fileName = NULL; jboolean isCopy; herr_t ret_val = FAIL; - hid_t file_id = H5I_INVALID_HID; hid_t dataset_id = H5I_INVALID_HID; FILE * stream = NULL; @@ -3574,17 +3755,9 @@ Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *env, jclass clss, jstring file_exp if (NULL == file_export_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_export_name is NULL"); - if (NULL == file_name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_name is NULL"); - if (NULL == object_path) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: object_path is NULL"); - PIN_JAVA_STRING(ENVONLY, file_name, fileName, NULL, "H5export_dataset: file name not pinned"); - - if ((file_id = H5Fopen(fileName, (unsigned)H5F_ACC_RDWR, (hid_t)H5P_DEFAULT)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - PIN_JAVA_STRING(ENVONLY, object_path, object_name, &isCopy, "H5export_dataset: object_path not pinned"); if ((dataset_id = H5Dopen2(file_id, object_name, H5P_DEFAULT)) < 0) @@ -3597,7 +3770,7 @@ Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *env, jclass clss, jstring file_exp H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed"); if ((ret_val = h5str_dump_simple_dset(ENVONLY, stream, dataset_id, binary_order)) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset failed"); + H5_ASSERTION_ERROR(ENVONLY, "h5str_dump_simple_dset failed"); if (stream) { HDfclose(stream); @@ -3611,14 +3784,65 @@ done: UNPIN_JAVA_STRING(ENVONLY, file_export_name, file_export); if (object_name) UNPIN_JAVA_STRING(ENVONLY, object_path, object_name); - if (fileName) - UNPIN_JAVA_STRING(ENVONLY, file_name, fileName); if (dataset_id >= 0) H5Dclose(dataset_id); - if (file_id >= 0) - H5Fclose(file_id); } /* end Java_hdf_hdf5lib_H5_H5export_1dataset */ +/* + * Class: hdf_hdf5lib_H5 + * Method: H5export_attribute + * Signature: (Ljava/lang/String;JLjava/lang/String;I)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5export_1attribute(JNIEnv *env, jclass clss, jstring file_export_name, jlong dset_id, + jstring attribute_name, jint binary_order) +{ + const char *file_export = NULL; + const char *object_name = NULL; + jboolean isCopy; + herr_t ret_val = FAIL; + hid_t attr_id = H5I_INVALID_HID; + FILE * stream = NULL; + + UNUSED(clss); + + if (NULL == file_export_name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_export_name is NULL"); + + if (NULL == attribute_name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: object_path is NULL"); + + PIN_JAVA_STRING(ENVONLY, attribute_name, object_name, &isCopy, + "H5export_dataset: object_path not pinned"); + + if ((attr_id = H5Aopen(dset_id, object_name, H5P_DEFAULT)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + PIN_JAVA_STRING(ENVONLY, file_export_name, file_export, NULL, + "H5export_dataset: file_export name not pinned"); + + if (NULL == (stream = HDfopen(file_export, "w+"))) + H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed"); + + if ((ret_val = h5str_dump_simple_mem(ENVONLY, stream, attr_id, binary_order)) < 0) + H5_ASSERTION_ERROR(ENVONLY, "h5str_dump_simple_dset failed"); + + if (stream) { + HDfclose(stream); + stream = NULL; + } + +done: + if (stream) + HDfclose(stream); + if (file_export) + UNPIN_JAVA_STRING(ENVONLY, file_export_name, file_export); + if (object_name) + UNPIN_JAVA_STRING(ENVONLY, attribute_name, object_name); + if (attr_id >= 0) + H5Aclose(attr_id); +} /* end Java_hdf_hdf5lib_H5_H5export_1attribute */ + #ifdef __cplusplus } #endif diff --git a/java/src/jni/h5util.h b/java/src/jni/h5util.h index 4b79eda..6c568e1 100644 --- a/java/src/jni/h5util.h +++ b/java/src/jni/h5util.h @@ -41,13 +41,12 @@ extern void h5str_resize(h5str_t *str, size_t new_len); extern char * h5str_append(h5str_t *str, const char *cstr); extern size_t h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset); -extern void h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref_p); +extern int h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p); extern size_t h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, - size_t in_buf_len, int expand_data); + int expand_data); extern void h5str_array_free(char **strs, size_t len); extern int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order); -extern int h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -extern int h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); +extern int h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr, int binary_order); extern htri_t H5Tdetect_variable_str(hid_t tid); @@ -107,9 +106,16 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max(JNIEnv *, jcla /* * Class: hdf_hdf5lib_H5 * Method: H5export_dataset - * Signature: (Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;I)V + * Signature: (Ljava/lang/String;JLjava/lang/String;I)V */ -JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *, jclass, jstring, jstring, jstring, - jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *, jclass, jstring, jlong, jstring, jint); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5export_attribute + * Signature: (Ljava/lang/String;JLjava/lang/String;I)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5export_1attribute(JNIEnv *, jclass, jstring, jlong, jstring, + jint); #endif /* H5UTIL_H__ */ diff --git a/java/src/jni/h5vlImp.c b/java/src/jni/h5vlImp.c index 9b48d21..40f8863 100644 --- a/java/src/jni/h5vlImp.c +++ b/java/src/jni/h5vlImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5vlImp.h b/java/src/jni/h5vlImp.h index 70c5006..a17807f 100644 --- a/java/src/jni/h5vlImp.h +++ b/java/src/jni/h5vlImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5VL */ -#ifndef _Included_hdf_hdf5lib_H5_H5VL -#define _Included_hdf_hdf5lib_H5_H5VL +#ifndef Included_hdf_hdf5lib_H5_H5VL +#define Included_hdf_hdf5lib_H5_H5VL #ifdef __cplusplus extern "C" { @@ -98,4 +97,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5VLunregister_1connector(JNIEnv *, j } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5VL */ +#endif /* Included_hdf_hdf5lib_H5_H5VL */ diff --git a/java/src/jni/h5zImp.h b/java/src/jni/h5zImp.h index 924776c..3092ae6 100644 --- a/java/src/jni/h5zImp.h +++ b/java/src/jni/h5zImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5Z */ -#ifndef _Included_hdf_hdf5lib_H5_H5Z -#define _Included_hdf_hdf5lib_H5_H5Z +#ifndef Included_hdf_hdf5lib_H5_H5Z +#define Included_hdf_hdf5lib_H5_H5Z #ifdef __cplusplus extern "C" { @@ -47,4 +46,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Zget_1filter_1info(JNIEnv *, jclass } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5Z */ +#endif /* Included_hdf_hdf5lib_H5_H5Z */ diff --git a/java/src/jni/nativeData.h b/java/src/jni/nativeData.h index 398dfc9..9bf313f 100644 --- a/java/src/jni/nativeData.h +++ b/java/src/jni/nativeData.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_HDFNativeData */ -#ifndef _Included_hdf_hdf5lib_HDFNativeData -#define _Included_hdf_hdf5lib_HDFNativeData +#ifndef Included_hdf_hdf5lib_HDFNativeData +#define Included_hdf_hdf5lib_HDFNativeData #ifdef __cplusplus extern "C" { @@ -98,4 +97,4 @@ JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToByte__B(JNIEnv } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_HDFNativeData */ +#endif /* Included_hdf_hdf5lib_HDFNativeData */ |