H5O_info fixes for java and examples

4 files changed, 40 insertions, 28 deletions

diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c
index 900316e..0f4361f 100644
--- a/java/src/jni/h5Constants.c
+++ b/java/src/jni/h5Constants.c
@@ -643,6 +643,18 @@ Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1WITHOUT_1ATTR_1FLAG(JNIEnv *env, jclas
 JNIEXPORT jint JNICALL
 Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1PRESERVE_1NULL_1FLAG(JNIEnv *env, jclass cls){return H5O_COPY_PRESERVE_NULL_FLAG; }
 JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1BASIC(JNIEnv *env, jclass cls) { return H5O_INFO_BASIC; }
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1TIME(JNIEnv *env, jclass cls) { return H5O_INFO_TIME; }
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1NUM_1ATTRS(JNIEnv *env, jclass cls) { return H5O_INFO_NUM_ATTRS; }
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1HDR(JNIEnv *env, jclass cls) { return H5O_INFO_HDR; }
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1META_1SIZE(JNIEnv *env, jclass cls) { return H5O_INFO_META_SIZE; }
+JNIEXPORT jint JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1ALL(JNIEnv *env, jclass cls) { return H5O_INFO_ALL; }
+JNIEXPORT jint JNICALL
 Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1NONE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_NONE_FLAG; }
 JNIEXPORT jint JNICALL
 Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1SDSPACE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_SDSPACE_FLAG; }
diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c
index e8abead..d9276da 100644
--- a/java/src/jni/h5oImp.c
+++ b/java/src/jni/h5oImp.c
@@ -105,11 +105,11 @@ Java_hdf_hdf5lib_H5_H5Ocopy
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Oget_info
- * Signature: (J)Lhdf/hdf5lib/structs/H5O_info_t;
+ * Signature: (JI)Lhdf/hdf5lib/structs/H5O_info_t;
  */
 JNIEXPORT jobject JNICALL
 Java_hdf_hdf5lib_H5_H5Oget_1info
-    (JNIEnv *env, jclass clss, jlong loc_id)
+    (JNIEnv *env, jclass clss, jlong loc_id, jint fields)
 {
     herr_t      status = -1;
     H5O_info_t  infobuf;
@@ -119,7 +119,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info
     jobject     ihinfobuf2;
     jobject     ret_obj = NULL;
 
-    status = H5Oget_info((hid_t)loc_id, &infobuf);
+    status = H5Oget_info2((hid_t)loc_id, &infobuf, (unsigned)fields);
 
     if (status < 0) {
         h5libraryError(env);
@@ -168,11 +168,11 @@ Java_hdf_hdf5lib_H5_H5Oget_1info
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Oget_info_by_name
- * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5O_info_t;
+ * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t;
  */
 JNIEXPORT jobject JNICALL
 Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name
-    (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id)
+    (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint fields, jlong access_id)
 {
     const char *lName;
     herr_t      status = -1;
@@ -185,7 +185,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name
 
     PIN_JAVA_STRING(name, lName);
     if (lName != NULL) {
-        status = H5Oget_info_by_name((hid_t)loc_id, lName, &infobuf, (hid_t)access_id);
+        status = H5Oget_info_by_name2((hid_t)loc_id, lName, &infobuf, (unsigned)fields, (hid_t)access_id);
 
         UNPIN_JAVA_STRING(name, lName);
 
@@ -237,12 +237,12 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Oget_info_by_idx
- * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5O_info_t;
+ * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t;
  */
 JNIEXPORT jobject JNICALL
 Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx
     (JNIEnv *env, jclass clss, jlong loc_id,
-        jstring name, jint index_field, jint order, jlong link_n, jlong access_id)
+        jstring name, jint index_field, jint order, jlong link_n, jint fields, jlong access_id)
 {
     const char *lName;
     herr_t      status;
@@ -255,7 +255,7 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx
 
     PIN_JAVA_STRING(name, lName);
     if (lName != NULL) {
-        status = H5Oget_info_by_idx((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id);
+        status = H5Oget_info_by_idx2((hid_t)loc_id, lName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id);
 
         UNPIN_JAVA_STRING(name, lName);
 
@@ -423,12 +423,12 @@ H5O_iterate_cb
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Ovisit
- * Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I
+ * Signature: (JIILjava/lang/Object;Ljava/lang/Object;I)I
  */
 JNIEXPORT jint JNICALL
 Java_hdf_hdf5lib_H5_H5Ovisit
     (JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order,
-        jobject callback_op, jobject op_data)
+        jobject callback_op, jobject op_data, jint fields)
 {
     herr_t   status = -1;
 
@@ -442,7 +442,7 @@ Java_hdf_hdf5lib_H5_H5Ovisit
         h5nullArgument(env, "H5Ovisit:  callback_op is NULL");
     } /* end if */
     else {
-        status = H5Ovisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data);
+        status = H5Ovisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data, (unsigned)fields);
 
         if (status < 0)
             h5libraryError(env);
@@ -454,12 +454,12 @@ Java_hdf_hdf5lib_H5_H5Ovisit
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Ovisit_by_name
- * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;J)I
+ * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;IJ)I
  */
 JNIEXPORT jint JNICALL
 Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name
     (JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order,
-        jobject callback_op, jobject op_data, jlong access_id)
+        jobject callback_op, jobject op_data, jint fields, jlong access_id)
 {
     herr_t        status = -1;
     const char   *lName;
@@ -478,7 +478,7 @@ Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name
     else {
         PIN_JAVA_STRING(name, lName);
         if (lName != NULL) {
-            status = H5Ovisit_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data, (hid_t)access_id);
+            status = H5Ovisit_by_name((hid_t)grp_id, lName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void*)op_data, (unsigned)fields, (hid_t)access_id);
 
             UNPIN_JAVA_STRING(name, lName);
 
diff --git a/java/src/jni/h5oImp.h b/java/src/jni/h5oImp.h
index 224f298..cb8c776 100644
--- a/java/src/jni/h5oImp.h
+++ b/java/src/jni/h5oImp.h
@@ -52,29 +52,29 @@ Java_hdf_hdf5lib_H5_H5Ocopy
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Oget_info
- * Signature: (J)Lhdf/hdf5lib/structs/H5O_info_t;
+ * Signature: (JI)Lhdf/hdf5lib/structs/H5O_info_t;
  */
 JNIEXPORT jobject JNICALL
 Java_hdf_hdf5lib_H5_H5Oget_1info
-(JNIEnv*, jclass, jlong);
+(JNIEnv*, jclass, jlong, jint fields);
 
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Oget_info_by_name
- * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5O_info_t;
+ * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t;
  */
 JNIEXPORT jobject JNICALL
 Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name
-(JNIEnv*, jclass, jlong, jstring, jlong);
+(JNIEnv*, jclass, jlong, jstring, jint fields, jlong);
 
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Oget_info_by_idx
- * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5O_info_t;
+ * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t;
  */
 JNIEXPORT jobject JNICALL
 Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx
-(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong);
+(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jint fields, jlong);
 
 /*
  * Class:     hdf_hdf5lib_H5
@@ -88,20 +88,20 @@ Java_hdf_hdf5lib_H5_H5Olink
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Ovisit
- * Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I
+ * Signature: (JIILjava/lang/Object;Ljava/lang/Object;I)I
  */
 JNIEXPORT jint JNICALL
 Java_hdf_hdf5lib_H5_H5Ovisit
-  (JNIEnv*, jclass, jlong, jint, jint, jobject, jobject);
+  (JNIEnv*, jclass, jlong, jint, jint, jobject, jobject, jint);
 
 /*
  * Class:     hdf_hdf5lib_H5
  * Method:    H5Ovisit_by_name
- * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;J)I
+ * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;IJ)I
  */
 JNIEXPORT jint JNICALL
 Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name
-  (JNIEnv*, jclass, jlong, jstring, jint, jint, jobject, jobject, jlong);
+  (JNIEnv*, jclass, jlong, jstring, jint, jint, jobject, jobject, jint, jlong);
 
 /*
  * Class:     hdf_hdf5lib_H5
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index fdabd76..9a98202 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -425,7 +425,7 @@ h5str_sprintf
 
                 this_str = (char*)HDmalloc(64);
                 obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, ptr);
-                H5Oget_info(obj, &oi);
+                H5Oget_info2(obj, &oi, H5O_INFO_ALL);
 
                 /* Print object data and close object */
                 sprintf(this_str, "%u-%lu", (unsigned) oi.type, oi.addr);
@@ -2552,7 +2552,7 @@ obj_info_all
     info_all_t *datainfo = (info_all_t*)op_data;
     H5O_info_t  object_info;
 
-    retVal = H5Oget_info_by_name(loc_id, name, &object_info, H5P_DEFAULT);
+    retVal = H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT);
 
     if (retVal < 0) {
         *(datainfo->otype+datainfo->count) = -1;
@@ -2591,7 +2591,7 @@ obj_info_max
     info_all_t *datainfo = (info_all_t*)op_data;
     H5O_info_t  object_info;
 
-    retVal = H5Oget_info(loc_id, &object_info);
+    retVal = H5Oget_info2(loc_id, &object_info, H5O_INFO_ALL);
     if (retVal < 0) {
         *(datainfo->otype+datainfo->count) = -1;
         *(datainfo->ltype+datainfo->count) = -1;