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author | Allen Byrne <50328838+byrnHDF@users.noreply.github.com> | 2023-06-13 03:04:49 (GMT) |
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committer | GitHub <noreply@github.com> | 2023-06-13 03:04:49 (GMT) |
commit | bfeb1b0dd5b7b2e4a706ff9b9515bba15e673f31 (patch) | |
tree | 28f4028d7e492dd538f043fc8e060f9858920365 /java/src/jni | |
parent | 2af7ea3c22a07cfe617de6c43576a0ff4278f5eb (diff) | |
download | hdf5-bfeb1b0dd5b7b2e4a706ff9b9515bba15e673f31.zip hdf5-bfeb1b0dd5b7b2e4a706ff9b9515bba15e673f31.tar.gz hdf5-bfeb1b0dd5b7b2e4a706ff9b9515bba15e673f31.tar.bz2 |
Fix doxygen and actions - merge from develop (#3109)
* Update the workflows to changes in develop
* Disable java for error only action
* Fix Fortran doxygen
* add fortran alias
* Merge changes from develop to fix actions
Diffstat (limited to 'java/src/jni')
-rw-r--r-- | java/src/jni/h5Constants.c | 8 | ||||
-rw-r--r-- | java/src/jni/h5aImp.c | 25 | ||||
-rw-r--r-- | java/src/jni/h5dImp.c | 21 | ||||
-rw-r--r-- | java/src/jni/h5lImp.c | 8 | ||||
-rw-r--r-- | java/src/jni/h5pDAPLImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5pFAPLImp.c | 2 | ||||
-rw-r--r-- | java/src/jni/h5util.c | 149 |
7 files changed, 90 insertions, 125 deletions
diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index 18a74b3..63b82ea 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -1653,16 +1653,24 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1GHEAP_1SIZE(JNIEnv *env, jcla { return (hsize_t)(3 * (HADDR_MAX / (H5FD_MEM_NTYPES - 1))); } +H5_GCC_CLANG_DIAG_OFF("sign-conversion") JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1LHEAP_1SIZE(JNIEnv *env, jclass cls) { + /* XXX: BADNESS! - This value cannot fit into a jlong! + * + * For now, we're going to ignore these values since the multi VFD is + * scheduled for removal in HDF5 2.0. + */ return (hsize_t)(4 * (HADDR_MAX / (H5FD_MEM_NTYPES - 1))); } JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1OHDR_1SIZE(JNIEnv *env, jclass cls) { + /* XXX: BADNESS! - This value cannot fit into a jlong! */ return (hsize_t)(5 * (HADDR_MAX / (H5FD_MEM_NTYPES - 1))); } +H5_GCC_CLANG_DIAG_ON("sign-conversion") /* Symbols defined for compatibility with previous versions of the HDF5 API. * diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index 07ecdb8..a8041a6 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -161,7 +161,7 @@ Java_hdf_hdf5lib_H5_H5Aread(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_t hid_t sid = H5I_INVALID_HID; size_t typeSize; H5T_class_t type_class; - jsize vl_array_len; // Only used by vl_data_class types + jsize vl_array_len = 0; // Only used by vl_data_class types htri_t vl_data_class; herr_t status = FAIL; @@ -248,7 +248,7 @@ Java_hdf_hdf5lib_H5_H5Awrite(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_ hid_t sid = H5I_INVALID_HID; size_t typeSize; H5T_class_t type_class; - jsize vl_array_len; // Only used by vl_data_class types + jsize vl_array_len = 0; // Only used by vl_data_class types htri_t vl_data_class; herr_t status = FAIL; @@ -1107,7 +1107,6 @@ done: JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) { - jboolean readBufIsCopy; jbyte *readBuf = NULL; hsize_t dims[H5S_MAX_RANK]; hid_t sid = H5I_INVALID_HID; @@ -1174,7 +1173,6 @@ done: JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5AwriteVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) { - jboolean writeBufIsCopy; jbyte *writeBuf = NULL; hsize_t dims[H5S_MAX_RANK]; hid_t sid = H5I_INVALID_HID; @@ -1632,21 +1630,24 @@ H5AwriteVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) continue; } - /* - * length = ENVPTR->GetStringUTFLength(ENVONLY, jstr); - * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - */ - PIN_JAVA_STRING(ENVONLY, jstr, utf8, NULL, "H5AwriteVL_asstr: failed to pin string buffer"); /* - * TODO: If the string isn't a copy, we should probably make - * one before destroying it with h5str_convert. + * Make a copy of the string since h5str_convert uses strtok. */ + char *utf8_copy = NULL; - if (!h5str_convert(ENVONLY, (char **)&utf8, aid, tid, &(((char *)writeBuf)[i * typeSize]), 0)) + jsize length = ENVPTR->GetStringUTFLength(ENVONLY, jstr); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if (NULL == (utf8_copy = HDstrndup(utf8, (size_t)length))) + H5_LIBRARY_ERROR(ENVONLY); + + if (!h5str_convert(ENVONLY, &utf8_copy, aid, tid, &(((char *)writeBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + HDfree(utf8_copy); + UNPIN_JAVA_STRING(ENVONLY, jstr, utf8); utf8 = NULL; diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index efddb96..de7fb21 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -1134,7 +1134,6 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) { - jboolean readBufIsCopy; jbyte *readBuf = NULL; size_t typeSize; H5T_class_t type_class; @@ -1195,7 +1194,6 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) { - jboolean writeBufIsCopy; jbyte *writeBuf = NULL; size_t typeSize; H5T_class_t type_class; @@ -1680,21 +1678,24 @@ H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_si continue; } - /* - * length = ENVPTR->GetStringUTFLength(ENVONLY, jstr); - * CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - */ - PIN_JAVA_STRING(ENVONLY, jstr, utf8, NULL, "H5DwriteVL_asstr: failed to pin string buffer"); /* - * TODO: If the string isn't a copy, we should probably make - * one before destroying it with h5str_convert. + * Make a copy of the string since h5str_convert uses strtok. */ + char *utf8_copy = NULL; - if (!h5str_convert(ENVONLY, (char **)&utf8, did, tid, &(((char *)writeBuf)[i * typeSize]), 0)) + jsize length = ENVPTR->GetStringUTFLength(ENVONLY, jstr); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if (NULL == (utf8_copy = HDstrndup(utf8, (size_t)length))) + H5_LIBRARY_ERROR(ENVONLY); + + if (!h5str_convert(ENVONLY, &utf8_copy, did, tid, &(((char *)writeBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + HDfree(utf8_copy); + UNPIN_JAVA_STRING(ENVONLY, jstr, utf8); utf8 = NULL; diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c index 1f2e8d8..67f4850 100644 --- a/java/src/jni/h5lImp.c +++ b/java/src/jni/h5lImp.c @@ -277,7 +277,7 @@ done: JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Lget_1info(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { - H5L_info2_t infobuf; + H5L_info2_t infobuf = {H5L_TYPE_ERROR, FALSE, -1, H5T_CSET_ERROR, {{{0}}}}; const char *linkName = NULL; jvalue args[5]; herr_t status = FAIL; @@ -340,7 +340,7 @@ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, jlong link_n, jlong access_id) { - H5L_info2_t infobuf; + H5L_info2_t infobuf = {H5L_TYPE_ERROR, FALSE, -1, H5T_CSET_ERROR, {{{0}}}}; const char *groupName = NULL; jvalue args[5]; herr_t status = FAIL; @@ -454,7 +454,7 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lget_1value(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jobjectArray link_value, jlong access_id) { - H5L_info2_t infobuf; + H5L_info2_t infobuf = {H5L_TYPE_ERROR, FALSE, -1, H5T_CSET_ERROR, {{{0}}}}; const char *file_name = NULL; const char *obj_name = NULL; const char *linkName = NULL; @@ -544,7 +544,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx(JNIEnv *env, jclass clss, jlong loc_i jint index_field, jint order, jlong link_n, jobjectArray link_value, jlong access_id) { - H5L_info2_t infobuf; + H5L_info2_t infobuf = {H5L_TYPE_ERROR, FALSE, -1, H5T_CSET_ERROR, {{{0}}}}; const char *file_name = NULL; const char *obj_name = NULL; const char *grpName = NULL; diff --git a/java/src/jni/h5pDAPLImp.c b/java/src/jni/h5pDAPLImp.c index 01108b3..666f47d 100644 --- a/java/src/jni/h5pDAPLImp.c +++ b/java/src/jni/h5pDAPLImp.c @@ -80,6 +80,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache(JNIEnv *env, jclass clss, jlong dapl, j if (NULL != rdcc_nbytes) PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_chunk_cache: nbytesArray array not pinned"); + if (NULL == nbytesArray) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "nbytesArray should not be NULL after pinning"); { /* direct cast (size_t *)variable fails on 32-bit environment */ diff --git a/java/src/jni/h5pFAPLImp.c b/java/src/jni/h5pFAPLImp.c index f094aaf..80ed6c6 100644 --- a/java/src/jni/h5pFAPLImp.c +++ b/java/src/jni/h5pFAPLImp.c @@ -1252,6 +1252,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1cache(JNIEnv *env, jclass clss, jlong plist, jintArr if (NULL != rdcc_nbytes) PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_cache: nbytesArray array not pinned"); + if (NULL == nbytesArray) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "nbytesArray should not be NULL after pinning"); { /* direct cast (size_t *)variable fails on 32-bit environment */ diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c index 77fb244..56708a8 100644 --- a/java/src/jni/h5util.c +++ b/java/src/jni/h5util.c @@ -77,8 +77,7 @@ static int render_bin_output_region_data_points(FILE *stream, hid_t region_sp hsize_t *ptdata); static int render_bin_output_region_points(FILE *stream, hid_t region_space, hid_t region_id, hid_t container); -jobject translate_atomic_rbuf(JNIEnv *env, jobject ret_buf, jlong mem_type_id, H5T_class_t type_class, - void *raw_buf); +jobject translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, void *raw_buf); void translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_t type_class, void *raw_buf); @@ -439,40 +438,43 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_ break; case H5T_ENUM: { - void *value = NULL; + void *value = NULL; + unsigned char tmp_uchar = 0; + unsigned short tmp_ushort = 0; + unsigned int tmp_uint = 0; +#if H5_SIZEOF_LONG != H5_SIZEOF_INT + unsigned long tmp_ulong = 0; +#endif +#if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG + unsigned long long tmp_ullong = 0; +#endif token = HDstrtok(this_str, delimiter); switch (typeSize) { case sizeof(char): { - unsigned char tmp_uchar = 0; - value = &tmp_uchar; + value = &tmp_uchar; break; } case sizeof(short): { - unsigned short tmp_ushort = 0; - value = &tmp_ushort; + value = &tmp_ushort; break; } #if H5_SIZEOF_LONG != H5_SIZEOF_INT case sizeof(long): { - unsigned long tmp_ulong = 0; - value = &tmp_ulong; + value = &tmp_ulong; break; } #endif #if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG case sizeof(long long): { - unsigned long long tmp_ullong = 0; - value = &tmp_ullong; + value = &tmp_ullong; break; } #endif - default: { - unsigned int tmp_uint = 0; - value = &tmp_uint; + value = &tmp_uint; break; } } @@ -4045,16 +4047,14 @@ done: } /* end Java_hdf_hdf5lib_H5_H5export_1attribute */ jobject -translate_atomic_rbuf(JNIEnv *env, jobject ret_buf, jlong mem_type_id, H5T_class_t type_class, void *raw_buf) +translate_atomic_rbuf(JNIEnv *env, jlong mem_type_id, H5T_class_t type_class, void *raw_buf) { - jobject jobj = NULL; - hid_t memb = H5I_INVALID_HID; - int ret_buflen = -1; - jboolean found_jList = JNI_TRUE; - jobjectArray jList = NULL; + jobject jobj = NULL; + hid_t memb = H5I_INVALID_HID; + jobjectArray jList = NULL; H5T_class_t vlClass; size_t vlSize; - size_t i, x; + size_t i; size_t typeSize; // raw_buf is normally bytes except when used for variable length strings char *char_buf = (char *)raw_buf; @@ -4062,7 +4062,6 @@ translate_atomic_rbuf(JNIEnv *env, jobject ret_buf, jlong mem_type_id, H5T_class /* retrieve the java.util.ArrayList interface class */ jclass arrCList = ENVPTR->FindClass(ENVONLY, "java/util/ArrayList"); jmethodID arrListMethod = ENVPTR->GetMethodID(ENVONLY, arrCList, "<init>", "(I)V"); - jmethodID arrAddMethod = ENVPTR->GetMethodID(ENVONLY, arrCList, "add", "(Ljava/lang/Object;)Z"); /* Cache class types */ /* jclass cBool = ENVPTR->FindClass(ENVONLY, "java/lang/Boolean"); */ @@ -4087,7 +4086,6 @@ translate_atomic_rbuf(JNIEnv *env, jobject ret_buf, jlong mem_type_id, H5T_class if (!(typeSize = H5Tget_size(mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); - ret_buflen = ENVPTR->GetArrayLength(ENVONLY, ret_buf); switch (type_class) { case H5T_VLEN: { if (!(memb = H5Tget_super(mem_type_id))) @@ -4100,9 +4098,6 @@ translate_atomic_rbuf(JNIEnv *env, jobject ret_buf, jlong mem_type_id, H5T_class /* Convert element to a list */ hvl_t vl_elem; - found_jList = JNI_TRUE; - jList = NULL; - /* Get the number of sequence elements */ HDmemcpy(&vl_elem, char_buf, sizeof(hvl_t)); jsize nelmts = (jsize)vl_elem.len; @@ -4121,8 +4116,7 @@ translate_atomic_rbuf(JNIEnv *env, jobject ret_buf, jlong mem_type_id, H5T_class break; } /* H5T_VLEN */ case H5T_COMPOUND: { - int nmembs = H5Tget_nmembers(mem_type_id); - void *objBuf = NULL; + int nmembs = H5Tget_nmembers(mem_type_id); /* The list we're going to return: */ if (NULL == (jList = (jobjectArray)ENVPTR->NewObject(ENVONLY, arrCList, arrListMethod, 0))) @@ -4136,15 +4130,13 @@ translate_atomic_rbuf(JNIEnv *env, jobject ret_buf, jlong mem_type_id, H5T_class if ((memb = H5Tget_member_type(mem_type_id, (unsigned int)i)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if ((memb_offset = H5Tget_member_offset(mem_type_id, (unsigned int)i)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + memb_offset = H5Tget_member_offset(mem_type_id, (unsigned int)i); if ((memb_vlClass = H5Tget_class(memb)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (!(memb_vlSize = H5Tget_size(memb))) H5_LIBRARY_ERROR(ENVONLY); - translate_atomic_rbuf(ENVONLY, jList, memb, memb_vlClass, - char_buf + i * typeSize + memb_offset); + translate_atomic_rbuf(ENVONLY, memb, memb_vlClass, char_buf + i * typeSize + memb_offset); H5Tclose(memb); } jobj = jList; @@ -4315,7 +4307,7 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_ hid_t memb = H5I_INVALID_HID; H5T_class_t vlClass; size_t vlSize; - size_t i, x; + size_t i; size_t typeSize; // raw_buf is normally bytes except when used for variable length strings char *char_buf = (char *)raw_buf; @@ -4371,8 +4363,6 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_ break; } /* H5T_VLEN */ case H5T_COMPOUND: { - void *objBuf = NULL; - /* Convert each compound element */ int nmembs = H5Tget_nmembers(mem_type_id); @@ -4394,14 +4384,13 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_ if ((memb = H5Tget_member_type(mem_type_id, (unsigned int)i)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if ((memb_offset = H5Tget_member_offset(mem_type_id, (unsigned int)i)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + memb_offset = H5Tget_member_offset(mem_type_id, (unsigned int)i); if ((memb_vlClass = H5Tget_class(memb)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (!(memb_vlSize = H5Tget_size(memb))) H5_LIBRARY_ERROR(ENVONLY); - jobject arr_obj = ENVPTR->GetObjectArrayElement(ENVONLY, array, i); + jobject arr_obj = ENVPTR->GetObjectArrayElement(ENVONLY, array, (jsize)i); translate_atomic_wbuf(ENVONLY, arr_obj, memb, memb_vlClass, char_buf + i * typeSize + memb_offset); ENVPTR->DeleteLocalRef(ENVONLY, arr_obj); @@ -4434,7 +4423,7 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_ translate_wbuf(ENVONLY, array, memb, vlClass, (jsize)jnelmts, objBuf); - HDmemcpy(char_buf, (char *)objBuf, vlSize * jnelmts); + HDmemcpy(char_buf, (char *)objBuf, vlSize * (size_t)jnelmts); break; } /* H5T_ARRAY */ case H5T_ENUM: @@ -4446,6 +4435,7 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_ case sizeof(jbyte): { jbyte byteValue = ENVPTR->CallByteMethod(ENVONLY, in_obj, byteValueMid); HDmemcpy(char_buf, ((char *)&byteValue), typeSize); + break; } case sizeof(jshort): { jshort shortValue = ENVPTR->CallShortMethod(ENVONLY, in_obj, shortValueMid); @@ -4504,12 +4494,12 @@ translate_atomic_wbuf(JNIEnv *env, jobject in_obj, jlong mem_type_id, H5T_class_ length = ENVPTR->GetStringUTFLength(ENVONLY, in_obj); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (is_variable) { - char *new_buf = (char *)HDcalloc((size_t)1, length + 1); - HDmemcpy(((char *)new_buf), utf8, length); + char *new_buf = (char *)HDcalloc(1, (size_t)(length + 1)); + HDmemcpy(((char *)new_buf), utf8, (size_t)length); HDmemcpy(char_buf, &new_buf, typeSize); } else { - HDmemcpy(char_buf, utf8, length); + HDmemcpy(char_buf, utf8, (size_t)length); } UNPIN_JAVA_STRING(ENVONLY, in_obj, utf8); utf8 = NULL; @@ -4547,25 +4537,13 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t jmethodID arrListMethod = ENVPTR->GetMethodID(ENVONLY, arrCList, "<init>", "(I)V"); jmethodID arrAddMethod = ENVPTR->GetMethodID(ENVONLY, arrCList, "add", "(Ljava/lang/Object;)Z"); - /* Cache class types */ - jclass cByte = ENVPTR->FindClass(ENVONLY, "java/lang/Byte"); - jclass cShort = ENVPTR->FindClass(ENVONLY, "java/lang/Short"); - jclass cInt = ENVPTR->FindClass(ENVONLY, "java/lang/Integer"); - jclass cLong = ENVPTR->FindClass(ENVONLY, "java/lang/Long"); - jclass cFloat = ENVPTR->FindClass(ENVONLY, "java/lang/Float"); - jclass cDouble = ENVPTR->FindClass(ENVONLY, "java/lang/Double"); - jmethodID byteValueMid = ENVPTR->GetStaticMethodID(ENVONLY, cByte, "valueOf", "(B)Ljava/lang/Byte;"); - jmethodID shortValueMid = ENVPTR->GetStaticMethodID(ENVONLY, cShort, "valueOf", "(S)Ljava/lang/Short;"); - jmethodID intValueMid = ENVPTR->GetStaticMethodID(ENVONLY, cInt, "valueOf", "(I)Ljava/lang/Integer;"); - jmethodID longValueMid = ENVPTR->GetStaticMethodID(ENVONLY, cLong, "valueOf", "(J)Ljava/lang/Long;"); - jmethodID floatValueMid = ENVPTR->GetStaticMethodID(ENVONLY, cFloat, "valueOf", "(F)Ljava/lang/Float;"); - jmethodID doubleValueMid = - ENVPTR->GetStaticMethodID(ENVONLY, cDouble, "valueOf", "(D)Ljava/lang/Double;"); - if (!(typeSize = H5Tget_size(mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); ret_buflen = ENVPTR->GetArrayLength(ENVONLY, ret_buf); + if (ret_buflen < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "ret_buflen: Array length cannot be negative"); + switch (type_class) { case H5T_VLEN: { if (!(memb = H5Tget_super(mem_type_id))) @@ -4592,7 +4570,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t H5_BAD_ARGUMENT_ERROR(ENVONLY, "translate_rbuf: number of VL elements < 0"); /* The list we're going to return: */ - if (i < ret_buflen) { + if (i < (size_t)ret_buflen) { jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)ret_buf, (jsize)i); } if (NULL == jList) { @@ -4604,7 +4582,6 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t } translate_rbuf(ENVONLY, jList, memb, vlClass, (jsize)nelmts, vl_elem.p); - int jListlen = ENVPTR->GetArrayLength(ENVONLY, jList); if (found_jList == JNI_FALSE) { jboolean addResult = ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, (jobject)jList); @@ -4612,7 +4589,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t H5_JNI_FATAL_ERROR(ENVONLY, "translate_rbuf: cannot add VL element"); } else { - ENVPTR->SetObjectArrayElement(ENVONLY, ret_buf, i, (jobject)jList); + ENVPTR->SetObjectArrayElement(ENVONLY, ret_buf, (jsize)i, (jobject)jList); CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); } ENVPTR->DeleteLocalRef(ENVONLY, jList); @@ -4620,15 +4597,13 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t break; } /* H5T_VLEN */ case H5T_COMPOUND: { - void *objBuf = NULL; - /* Convert each compound element to a list */ for (i = 0; i < (size_t)count; i++) { found_jList = JNI_TRUE; jList = NULL; /* The list we're going to return: */ - if (i < ret_buflen) { + if (i < (size_t)ret_buflen) { jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)ret_buf, (jsize)i); } if (NULL == jList) { @@ -4647,21 +4622,20 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t if ((memb = H5Tget_member_type(mem_type_id, (unsigned int)x)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if ((memb_offset = H5Tget_member_offset(mem_type_id, (unsigned int)x)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + memb_offset = H5Tget_member_offset(mem_type_id, (unsigned int)x); if ((memb_vlClass = H5Tget_class(memb)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (!(memb_vlSize = H5Tget_size(memb))) H5_LIBRARY_ERROR(ENVONLY); - jobj = translate_atomic_rbuf(ENVONLY, jList, memb, memb_vlClass, + jobj = translate_atomic_rbuf(ENVONLY, memb, memb_vlClass, char_buf + i * typeSize + memb_offset); if (jobj) { if (found_jList == JNI_FALSE) ENVPTR->CallBooleanMethod(ENVONLY, jList, arrAddMethod, (jobject)jobj); else - ENVPTR->SetObjectArrayElement(ENVONLY, jList, i, (jobject)jobj); + ENVPTR->SetObjectArrayElement(ENVONLY, jList, (jsize)i, (jobject)jobj); CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); ENVPTR->DeleteLocalRef(ENVONLY, jobj); } @@ -4671,7 +4645,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t if (ret_buflen == 0) ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, jList); else - ENVPTR->SetObjectArrayElement(ENVONLY, ret_buf, i, jList); + ENVPTR->SetObjectArrayElement(ENVONLY, ret_buf, (jsize)i, jList); CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); ENVPTR->DeleteLocalRef(ENVONLY, jList); } @@ -4704,7 +4678,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t HDmemcpy((char *)objBuf, char_buf + i * typeSize, typeSize); /* The list we're going to return: */ - if (i < ret_buflen) { + if (i < (size_t)ret_buflen) { if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)ret_buf, (jsize)i))) found_jList = JNI_FALSE; @@ -4720,7 +4694,7 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t if (found_jList == JNI_FALSE) ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, jList); else - ENVPTR->SetObjectArrayElement(ENVONLY, ret_buf, i, jList); + ENVPTR->SetObjectArrayElement(ENVONLY, ret_buf, (jsize)i, jList); CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); ENVPTR->DeleteLocalRef(ENVONLY, jList); } @@ -4739,13 +4713,12 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t case H5T_STRING: { /* Convert each element to a list */ for (i = 0; i < (size_t)count; i++) { - jobj = - translate_atomic_rbuf(ENVONLY, ret_buf, mem_type_id, type_class, char_buf + i * typeSize); + jobj = translate_atomic_rbuf(ENVONLY, mem_type_id, type_class, char_buf + i * typeSize); if (jobj) { if (ret_buflen == 0) ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, (jobject)jobj); else - ENVPTR->SetObjectArrayElement(ENVONLY, ret_buf, i, (jobject)jobj); + ENVPTR->SetObjectArrayElement(ENVONLY, ret_buf, (jsize)i, (jobject)jobj); CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); ENVPTR->DeleteLocalRef(ENVONLY, jobj); } @@ -4781,23 +4754,6 @@ translate_wbuf(JNIEnv *env, jobjectArray in_buf, jlong mem_type_id, H5T_class_t /* retrieve the toArray method */ jmethodID mToArray = ENVPTR->GetMethodID(ENVONLY, arrCList, "toArray", "()[Ljava/lang/Object;"); - /* Cache class types */ - /* jclass cBool = ENVPTR->FindClass(ENVONLY, "java/lang/Boolean"); */ - jclass cByte = ENVPTR->FindClass(ENVONLY, "java/lang/Byte"); - jclass cShort = ENVPTR->FindClass(ENVONLY, "java/lang/Short"); - jclass cInt = ENVPTR->FindClass(ENVONLY, "java/lang/Integer"); - jclass cLong = ENVPTR->FindClass(ENVONLY, "java/lang/Long"); - jclass cFloat = ENVPTR->FindClass(ENVONLY, "java/lang/Float"); - jclass cDouble = ENVPTR->FindClass(ENVONLY, "java/lang/Double"); - - /* jmethodID boolValueMid = ENVPTR->GetMethodID(ENVONLY, cBool, "booleanValue", "()Z"); */ - jmethodID byteValueMid = ENVPTR->GetMethodID(ENVONLY, cByte, "byteValue", "()B"); - jmethodID shortValueMid = ENVPTR->GetMethodID(ENVONLY, cShort, "shortValue", "()S"); - jmethodID intValueMid = ENVPTR->GetMethodID(ENVONLY, cInt, "intValue", "()I"); - jmethodID longValueMid = ENVPTR->GetMethodID(ENVONLY, cLong, "longValue", "()J"); - jmethodID floatValueMid = ENVPTR->GetMethodID(ENVONLY, cFloat, "floatValue", "()F"); - jmethodID doubleValueMid = ENVPTR->GetMethodID(ENVONLY, cDouble, "doubleValue", "()D"); - if (!(typeSize = H5Tget_size(mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); @@ -4840,8 +4796,6 @@ translate_wbuf(JNIEnv *env, jobjectArray in_buf, jlong mem_type_id, H5T_class_t break; } /* H5T_VLEN */ case H5T_COMPOUND: { - void *objBuf = NULL; - /* Convert each list to a compound element */ for (i = 0; i < (size_t)count; i++) { if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)in_buf, (jsize)i))) @@ -4867,15 +4821,14 @@ translate_wbuf(JNIEnv *env, jobjectArray in_buf, jlong mem_type_id, H5T_class_t if ((memb = H5Tget_member_type(mem_type_id, (unsigned int)x)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if ((memb_offset = H5Tget_member_offset(mem_type_id, (unsigned int)x)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + memb_offset = H5Tget_member_offset(mem_type_id, (unsigned int)x); if ((memb_vlClass = H5Tget_class(memb)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (!(memb_vlSize = H5Tget_size(memb))) H5_LIBRARY_ERROR(ENVONLY); - jobject arr_obj = ENVPTR->GetObjectArrayElement(ENVONLY, array, x); + jobject arr_obj = ENVPTR->GetObjectArrayElement(ENVONLY, array, (jsize)x); translate_atomic_wbuf(ENVONLY, arr_obj, memb, memb_vlClass, char_buf + i * typeSize + memb_offset); ENVPTR->DeleteLocalRef(ENVONLY, arr_obj); @@ -4887,8 +4840,6 @@ translate_wbuf(JNIEnv *env, jobjectArray in_buf, jlong mem_type_id, H5T_class_t break; } /* H5T_COMPOUND */ case H5T_ARRAY: { - void *objBuf = NULL; - if (!(memb = H5Tget_super(mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); if ((vlClass = H5Tget_class(memb)) < 0) @@ -4910,8 +4861,8 @@ translate_wbuf(JNIEnv *env, jobjectArray in_buf, jlong mem_type_id, H5T_class_t if (jnelmts < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "translate_wbuf: number of array elements < 0"); - translate_wbuf(ENVONLY, array, memb, vlClass, (jsize)jnelmts, - char_buf + i * vlSize * jnelmts); // objBuf); + translate_wbuf(ENVONLY, array, memb, vlClass, jnelmts, + char_buf + i * vlSize * (size_t)jnelmts); ENVPTR->DeleteLocalRef(ENVONLY, jList); } /* end for (i = 0; i < count; i++) */ |