[svn-r30075] Description:

    Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk.  Also CMake support for h5format_convert and a bunch of
misc. cleanups.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)

8 files changed, 178 insertions, 0 deletions

diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index 330752b..9bcbd5f 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -1779,6 +1779,33 @@ Java_hdf_hdf5lib_H5_H5Diterate
     return (jint)status;
 } /* end Java_hdf_hdf5lib_H5_H5Diterate */
 
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Dflush
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Dflush
+	(JNIEnv *env, jclass clss, jlong loc_id)
+{
+    if (H5Dflush((hid_t)loc_id) < 0)
+        h5libraryError(env);
+}
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Drefresh
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Drefresh
+	(JNIEnv *env, jclass clss, jlong loc_id)
+{
+    if (H5Drefresh((hid_t)loc_id) < 0)
+        h5libraryError(env);
+}
+
+
 
 #ifdef __cplusplus
 } /* end extern "C" */
diff --git a/java/src/jni/h5dImp.h b/java/src/jni/h5dImp.h
index a44d465..2a91334 100644
--- a/java/src/jni/h5dImp.h
+++ b/java/src/jni/h5dImp.h
@@ -348,6 +348,24 @@ JNIEXPORT jint JNICALL
 Java_hdf_hdf5lib_H5_H5Diterate
   (JNIEnv*, jclass, jbyteArray, jlong, jlong, jobject, jobject);
 
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Dflush
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL 
+Java_hdf_hdf5lib_H5_H5Dflush
+  (JNIEnv*, jclass, jlong);
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Drefresh
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL 
+Java_hdf_hdf5lib_H5_H5Drefresh
+  (JNIEnv*, jclass, jlong);
+
 #ifdef __cplusplus
 } /* end extern "C" */
 #endif /* __cplusplus */
diff --git a/java/src/jni/h5gImp.c b/java/src/jni/h5gImp.c
index 649ddde1..a2c0de0 100644
--- a/java/src/jni/h5gImp.c
+++ b/java/src/jni/h5gImp.c
@@ -260,6 +260,33 @@ Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx
     return create_H5G_info_t(env, group_info);
 } /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx */
 
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Gflush
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Gflush
+	(JNIEnv *env, jclass clss, jlong loc_id)
+{
+    if (H5Gflush((hid_t)loc_id) < 0)
+        h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Gflush */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Grefresh
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Grefresh
+	(JNIEnv *env, jclass clss, jlong loc_id)
+{
+    if (H5Grefresh((hid_t)loc_id) < 0)
+        h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Grefresh */
+
+
 
 #ifdef __cplusplus
 } /* end extern "C" */
diff --git a/java/src/jni/h5gImp.h b/java/src/jni/h5gImp.h
index 05c1e39..3113689 100644
--- a/java/src/jni/h5gImp.h
+++ b/java/src/jni/h5gImp.h
@@ -97,6 +97,24 @@ JNIEXPORT jobject JNICALL
 Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx
   (JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong);
 
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Gflush
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL 
+Java_hdf_hdf5lib_H5_H5Gflush
+  (JNIEnv*, jclass, jlong);
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Grefresh
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL 
+Java_hdf_hdf5lib_H5_H5Grefresh
+  (JNIEnv*, jclass, jlong);
+
 #ifdef __cplusplus
 } /* end extern "C" */
 #endif /* __cplusplus */
diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c
index 21723b8..872bb4c 100644
--- a/java/src/jni/h5oImp.c
+++ b/java/src/jni/h5oImp.c
@@ -779,6 +779,33 @@ Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx
     return (jlong)retVal;
 } /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx */
 
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Oflush
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Oflush
+	(JNIEnv *env, jclass clss, jlong loc_id)
+{
+    if (H5Oflush((hid_t)loc_id) < 0)
+        h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Oflush */
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Orefresh
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Orefresh
+	(JNIEnv *env, jclass clss, jlong loc_id)
+{
+    if (H5Orefresh((hid_t)loc_id) < 0)
+        h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Orefresh */
+
+
 
 #ifdef __cplusplus
 } /* end extern "C" */
diff --git a/java/src/jni/h5oImp.h b/java/src/jni/h5oImp.h
index 29e08e9..293dc2e 100644
--- a/java/src/jni/h5oImp.h
+++ b/java/src/jni/h5oImp.h
@@ -186,6 +186,24 @@ JNIEXPORT jlong JNICALL
 Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx
   (JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong);
 
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Oflush
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL 
+Java_hdf_hdf5lib_H5_H5Oflush
+  (JNIEnv*, jclass, jlong);
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Orefresh
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL 
+Java_hdf_hdf5lib_H5_H5Orefresh
+  (JNIEnv*, jclass, jlong);
+
 #ifdef __cplusplus
 } /* end extern "C" */
 #endif /* __cplusplus */
diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c
index dc052bc..55e16f8 100644
--- a/java/src/jni/h5tImp.c
+++ b/java/src/jni/h5tImp.c
@@ -1640,6 +1640,31 @@ Java_hdf_hdf5lib_H5_H5Tconvert
     } /* end else */
 } /* end Java_hdf_hdf5lib_H5_H5Tconvert */
 
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Tflush
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Tflush(JNIEnv *env, jclass clss, jlong loc_id)
+{
+    if (H5Tflush((hid_t)loc_id) < 0)
+        h5libraryError(env);
+}
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Trefresh
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Trefresh(JNIEnv *env, jclass clss, jlong loc_id)
+{
+    if (H5Trefresh((hid_t)loc_id) < 0)
+        h5libraryError(env);
+}
+
+
 
 #ifdef __cplusplus
 } /* end extern "C" */
diff --git a/java/src/jni/h5tImp.h b/java/src/jni/h5tImp.h
index 9e6779d..e614082 100644
--- a/java/src/jni/h5tImp.h
+++ b/java/src/jni/h5tImp.h
@@ -608,6 +608,24 @@ JNIEXPORT void JNICALL
 Java_hdf_hdf5lib_H5_H5Tconvert
   (JNIEnv *, jclass, jlong, jlong, jlong, jbyteArray, jbyteArray, jlong);
 
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Tflush
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL 
+Java_hdf_hdf5lib_H5_H5Tflush
+  (JNIEnv*, jclass, jlong);
+
+/*
+ * Class:     hdf_hdf5lib_H5
+ * Method:    H5Trefresh
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL 
+Java_hdf_hdf5lib_H5_H5Trefresh
+  (JNIEnv*, jclass, jlong);
+
 #ifdef __cplusplus
 } /* end extern "C" */
 #endif /* __cplusplus */