Update system commands with HD prefix and whitespace

4 files changed, 11 insertions, 11 deletions

diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index f984948..652c873 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -1109,7 +1109,7 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string
                     const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
 
                     if (utf8) {
-                        strncpy(&c_buf[i * str_len], utf8, str_len);
+                        HDstrncpy(&c_buf[i * str_len], utf8, str_len);
                     } /* end if */
 
                     ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8);
diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c
index e6d1be8..52008ce 100644
--- a/java/src/jni/h5pImp.c
+++ b/java/src/jni/h5pImp.c
@@ -3881,7 +3881,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
                 const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
 
                 if (utf8) {
-                    member_name[i] = (char*)HDmalloc(strlen(utf8) + 1);
+                    member_name[i] = (char*)HDmalloc(HDstrlen(utf8) + 1);
                     if (member_name[i]) {
                         strcpy(member_name[i], utf8);
                     } /* end if */
@@ -4189,7 +4189,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
         h5JNIFatalError(env, "H5Pset_mdc_config: out of memory trace_file_name");
         return;
     } /* end if */
-    strncpy(cacheinfo.trace_file_name, str, 1025);
+    HDstrncpy(cacheinfo.trace_file_name, str, 1025);
     ENVPTR->ReleaseStringUTFChars(ENVPAR j_str, str);
     if(ENVPTR->ExceptionOccurred(ENVONLY)) {
         h5JNIFatalError(env, "H5Pset_mdc_config: loading trace_file_name failed");
diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c
index a4b4848..65cdd7b 100644
--- a/java/src/jni/h5sImp.c
+++ b/java/src/jni/h5sImp.c
@@ -571,7 +571,7 @@ Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple
         h5JNIFatalError(env, "H5Pset_simple_extent:  dims not pinned");
         return -1;
     } /* end if */
-    sa = lp = (hsize_t *) malloc((size_t)rank * sizeof(hsize_t));
+    sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t));
     if (sa == NULL) {
         ENVPTR->ReleaseLongArrayElements(ENVPAR dims, dimsP, JNI_ABORT);
         h5JNIFatalError(env, "H5Sset_simple_extent:  dims not converted to hsize_t");
@@ -1017,7 +1017,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist
                 h5JNIFatalError(env, "H5Sget_select_hyper_blocklist:  buf not pinned");
             } /* end if */
             else {
-                ba = (hsize_t *) malloc((size_t)nb * 2 * (size_t)rank * sizeof(hsize_t));
+                ba = (hsize_t *) HDmalloc((size_t)nb * 2 * (size_t)rank * sizeof(hsize_t));
                 if (ba == NULL) {
                     ENVPTR->ReleaseLongArrayElements(ENVPAR buf, bufP, JNI_ABORT);
                     h5JNIFatalError(env, "H5Screate-simple:  buffer not converted to hsize_t");
@@ -1135,7 +1135,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds
             return -1;
         } /* end if */
         rank = (int) ENVPTR->GetArrayLength(ENVPAR start);
-        strt = (hsize_t *)malloc((size_t)rank * sizeof(hsize_t));
+        strt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t));
         if (strt == NULL) {
             ENVPTR->ReleaseLongArrayElements(ENVPAR start, startP, JNI_ABORT);
             h5JNIFatalError(env, "H5Sget_select_bounds:  start not converted to hsize_t");
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index 42f8a5c..fd34ba1 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -1768,7 +1768,7 @@ h5str_render_bin_output
                         if (H5Tis_variable_str(tid)) {
                             s = *(char**) mem;
                             if (s != NULL)
-                                size = strlen(s);
+                                size = HDstrlen(s);
                         }
                         else {
                             s = (char *) mem;
@@ -2129,11 +2129,11 @@ render_bin_output_region_data_points
                     ret_value = -1;
 
                 HDfree(dims1);
-            } /* end if((dims1 = (hsize_t *) malloc(sizeof(hsize_t) * ndims)) != NULL) */
+            } /* end if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) != NULL) */
             else
                 ret_value = -1;
             HDfree(region_buf);
-        } /* end if((region_buf = malloc(type_size * (size_t)npoints)) != NULL) */
+        } /* end if((region_buf = HDmalloc(type_size * (size_t)npoints)) != NULL) */
         else
             ret_value = -1;
 
@@ -2436,7 +2436,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex
     H5Tclose(p_type);
 
     n = ENVPTR->GetArrayLength(ENVPAR buf);
-    rdata = (char *)malloc((size_t)n * size);
+    rdata = (char *)HDmalloc((size_t)n * size);
     if (rdata == NULL) {
         h5JNIFatalError(env, "H5AreadComplex:  failed to allocate buff for read");
     } /* end if */
@@ -2952,7 +2952,7 @@ obj_info_all
     if (retVal < 0) {
         *(datainfo->otype+datainfo->count) = -1;
         *(datainfo->ltype+datainfo->count) = -1;
-        *(datainfo->objname+datainfo->count) = (char *)HDmalloc(strlen(name)+1);
+        *(datainfo->objname+datainfo->count) = (char *)HDmalloc(HDstrlen(name)+1);
         HDstrcpy(*(datainfo->objname+datainfo->count), name);
         *(datainfo->objno+datainfo->count) = (unsigned long)-1;
     } /* end if */