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authorAllen Byrne <50328838+byrnHDF@users.noreply.github.com>2022-11-16 04:44:33 (GMT)
committerGitHub <noreply@github.com>2022-11-16 04:44:33 (GMT)
commit719d800499c6c3a1abbb92871069eed53222fdbb (patch)
tree23d0086b07472a011f24159d8b6d54ec1047e917 /java/src
parent03cc2210165cc02fd50c87e6653c4b95b0bd7d83 (diff)
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Refactor JNI translate functions to a recursive switch on datatype (#2232)
Diffstat (limited to 'java/src')
-rw-r--r--java/src/jni/h5aImp.c106
-rw-r--r--java/src/jni/h5dImp.c89
-rw-r--r--java/src/jni/h5util.c819
3 files changed, 586 insertions, 428 deletions
diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c
index 132ce43..71caf76 100644
--- a/java/src/jni/h5aImp.c
+++ b/java/src/jni/h5aImp.c
@@ -175,10 +175,8 @@ Java_hdf_hdf5lib_H5_H5Aread(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_t
if (vl_data_class) {
/* Get size of data array */
- if ((vl_array_len = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ if ((vl_array_len = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: readBuf length < 0");
- }
if (!(typeSize = H5Tget_size(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
@@ -1109,9 +1107,56 @@ done:
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = FAIL;
+ jboolean readBufIsCopy;
+ jbyte *readBuf = NULL;
+ hsize_t dims[H5S_MAX_RANK];
+ hid_t sid = H5I_INVALID_HID;
+ size_t typeSize;
+ H5T_class_t type_class;
+ jsize vl_array_len;
+ htri_t vl_data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aread: read buffer is NULL");
+
+ if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Get size of data array */
+ if ((vl_array_len = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: readBuf length < 0");
+
+ if (!(typeSize = H5Tget_size(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (readBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread: failed to allocate raw VL read buffer");
+
+ if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, (void *)readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ translate_rbuf(env, buf, mem_type_id, type_class, vl_array_len, readBuf);
+
+done:
+ if (readBuf) {
+ if ((status >= 0) && vl_data_class) {
+ dims[0] = (hsize_t)vl_array_len;
+ if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ H5Treclaim(attr_id, sid, H5P_DEFAULT, readBuf);
+
+ if (sid >= 0)
+ H5Sclose(sid);
+ }
- status = Java_hdf_hdf5lib_H5_H5Aread(env, clss, attr_id, mem_type_id, (jbyteArray)buf, JNI_TRUE);
+ HDfree(readBuf);
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5AreadVL */
@@ -1124,9 +1169,56 @@ Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5AwriteVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf)
{
- herr_t status = FAIL;
+ jboolean writeBufIsCopy;
+ jbyte *writeBuf = NULL;
+ hsize_t dims[H5S_MAX_RANK];
+ hid_t sid = H5I_INVALID_HID;
+ size_t typeSize;
+ H5T_class_t type_class;
+ jsize vl_array_len;
+ htri_t vl_data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Awrite: write buffer is NULL");
+
+ if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Get size of data array */
+ if ((vl_array_len = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite: write buffer length < 0");
+ }
- status = Java_hdf_hdf5lib_H5_H5Awrite(env, clss, attr_id, mem_type_id, (jbyteArray)buf, JNI_TRUE);
+ if (!(typeSize = H5Tget_size(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (writeBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Awrite: failed to allocate raw VL write buffer");
+
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ translate_wbuf(ENVONLY, buf, mem_type_id, type_class, vl_array_len, writeBuf);
+
+ if ((status = H5Awrite((hid_t)attr_id, (hid_t)mem_type_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if ((status >= 0) && vl_data_class) {
+ dims[0] = (hsize_t)vl_array_len;
+ if ((sid = H5Screate_simple(1, dims, NULL)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ H5Treclaim(attr_id, sid, H5P_DEFAULT, writeBuf);
+ }
+
+ HDfree(writeBuf);
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5AwriteVL */
diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index 1a24bf6..56c5cc8 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -1134,10 +1134,47 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = FAIL;
+ jboolean readBufIsCopy;
+ jbyte *readBuf = NULL;
+ size_t typeSize;
+ H5T_class_t type_class;
+ jsize vl_array_len;
+ htri_t vl_data_class;
+ herr_t status = FAIL;
- status = Java_hdf_hdf5lib_H5_H5Dread(env, clss, dataset_id, mem_type_id, mem_space_id, file_space_id,
- xfer_plist_id, (jbyteArray)buf, JNI_TRUE);
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dread: read buffer is NULL");
+
+ if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ /* Get size of data array */
+ if ((vl_array_len = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: readBuf length < 0");
+ }
+
+ if (!(typeSize = H5Tget_size(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (readBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread: failed to allocate raw VL read buffer");
+
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, (void *)readBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ translate_rbuf(env, buf, mem_type_id, type_class, vl_array_len, readBuf);
+
+done:
+ if (readBuf) {
+ if ((status >= 0) && vl_data_class)
+ H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, readBuf);
+ HDfree(readBuf);
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5DreadVL */
@@ -1151,10 +1188,50 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
- herr_t status = FAIL;
+ jboolean writeBufIsCopy;
+ jbyte *writeBuf = NULL;
+ size_t typeSize;
+ H5T_class_t type_class;
+ jsize vl_array_len; // Only used by vl_data_class types
+ htri_t vl_data_class;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (NULL == buf)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: write buffer is NULL");
+
+ if ((vl_data_class = h5str_detect_vlen(mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Get size of data array */
+ if ((vl_array_len = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: write buffer length < 0");
+ }
- status = Java_hdf_hdf5lib_H5_H5Dwrite(env, clss, dataset_id, mem_type_id, mem_space_id, file_space_id,
- xfer_plist_id, (jbyteArray)buf, JNI_TRUE);
+ if (!(typeSize = H5Tget_size(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == (writeBuf = HDcalloc((size_t)vl_array_len, typeSize)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dwrite: failed to allocate raw VL write buffer");
+
+ if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ translate_wbuf(ENVONLY, buf, mem_type_id, type_class, vl_array_len, writeBuf);
+
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, writeBuf)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (writeBuf) {
+ if ((status >= 0) && vl_data_class)
+ H5Treclaim(dataset_id, mem_space_id, H5P_DEFAULT, writeBuf);
+
+ HDfree(writeBuf);
+ }
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5DwriteVL */
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index 05138fd..4e62085 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -3426,10 +3426,8 @@ Java_hdf_hdf5lib_H5_H5AreadComplex(JNIEnv *env, jclass clss, jlong attr_id, jlon
size = (((H5Tget_size(mem_type_id)) > (H5Tget_size(p_type))) ? (H5Tget_size(mem_type_id))
: (H5Tget_size(p_type)));
- if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) <= 0) {
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) <= 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadComplex: read buffer length <= 0");
- }
if (NULL == (readBuf = (char *)HDmalloc((size_t)n * size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadComplex: failed to allocate read buffer");
@@ -4046,12 +4044,12 @@ herr_t
translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t type_class, jsize count,
jbyte *raw_buf)
{
- herr_t status = FAIL;
- hid_t memb = H5I_INVALID_HID;
- H5T_class_t vlClass;
- size_t vlSize;
- jobjectArray jList = NULL;
- size_t i, j, x;
+ herr_t status = FAIL;
+ hid_t memb = H5I_INVALID_HID;
+ H5T_class_t vlClass;
+ size_t vlSize;
+ size_t i, x;
+ size_t typeSize;
/* retrieve the java.util.ArrayList interface class */
jclass arrCList = ENVPTR->FindClass(ENVONLY, "java/util/ArrayList");
@@ -4078,335 +4076,297 @@ translate_rbuf(JNIEnv *env, jobjectArray ret_buf, jlong mem_type_id, H5T_class_t
jmethodID doubleValueMid =
ENVPTR->GetStaticMethodID(ENVONLY, cDouble, "valueOf", "(D)Ljava/lang/Double;");
- if (type_class == H5T_VLEN) {
- if (!(memb = H5Tget_super(mem_type_id)))
- H5_LIBRARY_ERROR(ENVONLY);
- if ((vlClass = H5Tget_class(memb)) < 0)
- H5_LIBRARY_ERROR(ENVONLY);
- if (!(vlSize = H5Tget_size(memb)))
- H5_LIBRARY_ERROR(ENVONLY);
+ if (!(typeSize = H5Tget_size(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
- /* Convert each element to a list */
- for (i = 0; i < (size_t)count; i++) {
- hvl_t vl_elem;
- jboolean found_jList = JNI_TRUE;
-
- /* Get the number of sequence elements */
- HDmemcpy(&vl_elem, (char *)raw_buf + i * sizeof(hvl_t), sizeof(hvl_t));
- jsize nelmts = (jsize)vl_elem.len;
- if (vl_elem.len != (size_t)nelmts)
- H5_JNI_FATAL_ERROR(ENVONLY, "translate_rbuf: overflow of number of VL elements");
-
- if (nelmts < 0)
- H5_BAD_ARGUMENT_ERROR(ENVONLY, "translate_rbuf: number of VL elements < 0");
-
- /* The list we're going to return: */
- if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)ret_buf, (jsize)i))) {
- found_jList = JNI_FALSE;
- if (NULL == (jList = (jobjectArray)ENVPTR->NewObject(ENVONLY, arrCList, arrListMethod, 0)))
- H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_rbuf: failed to allocate list read buffer");
- }
+ switch (type_class) {
+ case H5T_VLEN: {
+ if (!(memb = H5Tget_super(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ if ((vlClass = H5Tget_class(memb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(vlSize = H5Tget_size(memb)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Convert each element to a list */
+ for (i = 0; i < (size_t)count; i++) {
+ hvl_t vl_elem;
+ jboolean found_jList = JNI_TRUE;
+ int ret_buflen = -1;
+ jobjectArray jList = NULL;
+
+ /* Get the number of sequence elements */
+ HDmemcpy(&vl_elem, (char *)raw_buf + i * sizeof(hvl_t), sizeof(hvl_t));
+ jsize nelmts = (jsize)vl_elem.len;
+ if (vl_elem.len != (size_t)nelmts)
+ H5_JNI_FATAL_ERROR(ENVONLY, "translate_rbuf: overflow of number of VL elements");
+
+ if (nelmts < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "translate_rbuf: number of VL elements < 0");
+
+ ret_buflen = ENVPTR->GetArrayLength(ENVONLY, ret_buf);
+ /* The list we're going to return: */
+ if (i < ret_buflen) {
+ jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)ret_buf, (jsize)i);
+ }
+ if (NULL == jList) {
+ found_jList = JNI_FALSE;
+ if (NULL ==
+ (jList = (jobjectArray)ENVPTR->NewObject(ENVONLY, arrCList, arrListMethod, 0)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY,
+ "translate_rbuf: failed to allocate list read buffer");
+ }
- if ((vlClass == H5T_ARRAY) || (vlClass == H5T_COMPOUND) || (vlClass == H5T_VLEN))
translate_rbuf(ENVONLY, jList, memb, vlClass, (jsize)nelmts, vl_elem.p);
- else {
- jobject jobj = NULL;
- for (j = 0; j < (size_t)nelmts; j++) {
- switch (vlClass) {
- /*case H5T_BOOL: {
- jboolean boolValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&boolValue)[x] = ((char *)vl_elem.p)[j*vlSize+x];
- }
-
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cBool, boolValueMid, boolValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- } */
- case H5T_INTEGER: {
- switch (vlSize) {
- case sizeof(jbyte): {
- jbyte byteValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&byteValue)[x] = ((char *)vl_elem.p)[j * vlSize + x];
- }
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cByte, byteValueMid,
- byteValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- case sizeof(jshort): {
- jshort shortValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&shortValue)[x] = ((char *)vl_elem.p)[j * vlSize + x];
- }
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cShort, shortValueMid,
- shortValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- case sizeof(jint): {
- jint intValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&intValue)[x] = ((char *)vl_elem.p)[j * vlSize + x];
- }
- jobj =
- ENVPTR->CallStaticObjectMethod(ENVONLY, cInt, intValueMid, intValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
- break;
- }
- case sizeof(jlong): {
- jlong longValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&longValue)[x] = ((char *)vl_elem.p)[j * vlSize + x];
- }
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cLong, longValueMid,
- longValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- }
- break;
- }
- case H5T_FLOAT: {
- switch (vlSize) {
- case sizeof(jfloat): {
- jfloat floatValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&floatValue)[x] = ((char *)vl_elem.p)[j * vlSize + x];
- }
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cFloat, floatValueMid,
- (double)floatValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- case sizeof(jdouble): {
- jdouble doubleValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&doubleValue)[x] = ((char *)vl_elem.p)[j * vlSize + x];
- }
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cDouble, doubleValueMid,
- doubleValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- }
- break;
- }
- case H5T_REFERENCE: {
- jboolean bb;
- jbyte *barray = NULL;
- jsize byteArraySize = (jsize)vlSize;
+ int jListlen = ENVPTR->GetArrayLength(ENVONLY, jList);
+ if (found_jList == JNI_FALSE) {
+ jboolean addResult =
+ ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, (jobject)jList);
+ if (!addResult)
+ H5_JNI_FATAL_ERROR(ENVONLY, "translate_rbuf: cannot add VL element");
+ }
+ ENVPTR->DeleteLocalRef(ENVONLY, jList);
+ }
+ break;
+ } /* H5T_VLEN */
+ case H5T_COMPOUND: {
+ int nmembs = H5Tget_nmembers(mem_type_id);
+ void *objBuf = NULL;
+ size_t offset;
- if (vlSize != (size_t)byteArraySize)
- H5_JNI_FATAL_ERROR(ENVONLY, "translate_rbuf: overflow of byteArraySize");
+ if (!(memb = H5Tget_super(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ if ((vlClass = H5Tget_class(memb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(vlSize = H5Tget_size(memb)))
+ H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (jobj = ENVPTR->NewByteArray(ENVONLY, byteArraySize)))
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ if (nmembs < 0)
+ goto done;
- PIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, &bb,
- "read(translate_buf) reference: byte array not pinned");
- for (x = 0; x < vlSize; x++) {
- barray[x] = ((jbyte *)vl_elem.p)[j * vlSize + x];
- }
- if (barray)
- UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, jobj ? 0 : JNI_ABORT);
+ /* Convert each element to a list */
+ for (i = 0; i < (size_t)nmembs; i++) {
+ jboolean found_jList = JNI_TRUE;
+ jobjectArray jList = NULL;
+ int ret_buflen = -1;
- break;
- }
- default:
- H5_UNIMPLEMENTED(ENVONLY, "translate_rbuf: invalid class type");
- break;
- }
- /* Add it to the list */
- if (jobj) {
- ENVPTR->CallBooleanMethod(ENVONLY, jList, arrAddMethod, jobj);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ if ((memb = H5Tget_member_type(mem_type_id, (unsigned int)i)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ offset = H5Tget_member_offset(mem_type_id, (unsigned int)i);
- ENVPTR->DeleteLocalRef(ENVONLY, jobj);
- }
+ if ((vlClass = H5Tget_class(memb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(vlSize = H5Tget_size(memb)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Get the object element */
+ HDmemcpy(&objBuf, (char *)raw_buf + offset, vlSize);
+
+ ret_buflen = ENVPTR->GetArrayLength(ENVONLY, ret_buf);
+ /* The list we're going to return: */
+ if (i < ret_buflen) {
+ if (NULL ==
+ (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)ret_buf, (jsize)i)))
+ found_jList = JNI_FALSE;
+ }
+ if (NULL == jList) {
+ if (NULL ==
+ (jList = (jobjectArray)ENVPTR->NewObject(ENVONLY, arrCList, arrListMethod, 0)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY,
+ "translate_rbuf: failed to allocate list read buffer");
}
+
+ translate_rbuf(ENVONLY, jList, memb, vlClass, (jsize)1, objBuf);
if (!found_jList) {
ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, jList);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
ENVPTR->DeleteLocalRef(ENVONLY, jList);
}
}
- }
- }
- else if (type_class == H5T_COMPOUND) {
- int nmembs = H5Tget_nmembers(mem_type_id);
- void *objBuf = NULL;
- size_t offset;
-
- if (nmembs < 0)
- goto done;
-
- /* Convert each element to a list */
- for (i = 0; i < (size_t)nmembs; i++) {
- jboolean found_jList = JNI_TRUE;
+ H5Tclose(memb);
+ break;
+ } /* H5T_COMPOUND */
+ case H5T_ARRAY: {
+ void *objBuf = NULL;
+ size_t typeCount;
- if ((memb = H5Tget_member_type(mem_type_id, (unsigned int)i)) < 0)
+ if (!(memb = H5Tget_super(mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- offset = H5Tget_member_offset(mem_type_id, (unsigned int)i);
-
if ((vlClass = H5Tget_class(memb)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (!(vlSize = H5Tget_size(memb)))
H5_LIBRARY_ERROR(ENVONLY);
- /* Get the object element */
- HDmemcpy(&objBuf, (char *)raw_buf + offset, vlSize);
+ if (!(typeSize = H5Tget_size(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ typeCount = typeSize / vlSize;
+
+ if (NULL == (objBuf = HDmalloc(typeSize)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_rbuf: failed to allocate buffer");
+
+ /* Convert each element to a list */
+ for (i = 0; i < (size_t)count; i++) {
+ jboolean found_jList = JNI_TRUE;
+ jobjectArray jList = NULL;
+ int ret_buflen = -1;
+
+ /* Get the object element */
+ HDmemcpy((char *)objBuf, (char *)raw_buf + i * typeSize, typeSize);
- /* The list we're going to return: */
- if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)ret_buf, (jsize)i))) {
- found_jList = JNI_FALSE;
- if (NULL == (jList = (jobjectArray)ENVPTR->NewObject(ENVONLY, arrCList, arrListMethod, 0)))
- H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_rbuf: failed to allocate list read buffer");
+ ret_buflen = ENVPTR->GetArrayLength(ENVONLY, ret_buf);
+ /* The list we're going to return: */
+ if (i < ret_buflen) {
+ if (NULL ==
+ (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)ret_buf, (jsize)i)))
+ found_jList = JNI_FALSE;
+ }
+ if (NULL == jList) {
+ if (NULL ==
+ (jList = (jobjectArray)ENVPTR->NewObject(ENVONLY, arrCList, arrListMethod, 0)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY,
+ "translate_rbuf: failed to allocate list read buffer");
+ }
+
+ translate_rbuf(ENVONLY, jList, memb, vlClass, (jsize)typeCount, objBuf);
+ if (!found_jList) {
+ ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, jList);
+ ENVPTR->DeleteLocalRef(ENVONLY, jList);
+ }
}
- if ((vlClass == H5T_ARRAY) || (vlClass == H5T_COMPOUND) || (vlClass == H5T_VLEN))
- translate_rbuf(ENVONLY, jList, memb, vlClass, (jsize)1, objBuf);
- else {
+ if (objBuf)
+ HDfree(objBuf);
+
+ break;
+ } /* H5T_ARRAY */
+ case H5T_INTEGER: {
+ /* Convert each element to a list */
+ for (i = 0; i < (size_t)count; i++) {
jobject jobj = NULL;
- switch (vlClass) {
- /*case H5T_BOOL: {
- jboolean boolValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&boolValue)[x] = ((char *)vl_elem.p)[j*vlSize+x];
+ switch (typeSize) {
+ case sizeof(jbyte): {
+ jbyte byteValue;
+ for (x = 0; x < typeSize; x++) {
+ ((char *)&byteValue)[x] = ((char *)raw_buf)[i * typeSize + x];
}
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cBool, boolValueMid, boolValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ if (NULL ==
+ (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cByte, byteValueMid, byteValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
- } */
- case H5T_INTEGER: {
- switch (vlSize) {
- case sizeof(jbyte): {
- jbyte byteValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&byteValue)[x] = ((char *)objBuf)[vlSize + x];
- }
-
- jobj =
- ENVPTR->CallStaticObjectMethod(ENVONLY, cByte, byteValueMid, byteValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- case sizeof(jshort): {
- jshort shortValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&shortValue)[x] = ((char *)objBuf)[vlSize + x];
- }
-
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cShort, shortValueMid,
- shortValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- case sizeof(jint): {
- jint intValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&intValue)[x] = ((char *)objBuf)[vlSize + x];
- }
-
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cInt, intValueMid, intValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- case sizeof(jlong): {
- jlong longValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&longValue)[x] = ((char *)objBuf)[vlSize + x];
- }
-
- jobj =
- ENVPTR->CallStaticObjectMethod(ENVONLY, cLong, longValueMid, longValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
+ }
+ case sizeof(jshort): {
+ jshort shortValue;
+ for (x = 0; x < typeSize; x++) {
+ ((char *)&shortValue)[x] = ((char *)raw_buf)[i * typeSize + x];
}
+
+ if (NULL == (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cShort, shortValueMid,
+ shortValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
}
- case H5T_FLOAT: {
- switch (vlSize) {
- case sizeof(jfloat): {
- jfloat floatValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&floatValue)[x] = ((char *)objBuf)[vlSize + x];
- }
-
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cFloat, floatValueMid,
- (double)floatValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
- case sizeof(jdouble): {
- jdouble doubleValue;
- for (x = 0; x < vlSize; x++) {
- ((char *)&doubleValue)[x] = ((char *)objBuf)[vlSize + x];
- }
-
- jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cDouble, doubleValueMid,
- doubleValue);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- break;
- }
+ case sizeof(jint): {
+ jint intValue;
+ for (x = 0; x < typeSize; x++) {
+ ((char *)&intValue)[x] = ((char *)raw_buf)[i * typeSize + x];
}
+
+ if (NULL ==
+ (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cInt, intValueMid, intValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
}
- case H5T_REFERENCE: {
- jboolean bb;
- jbyte *barray = NULL;
-
- jsize byteArraySize = (jsize)vlSize;
- if (vlSize != (size_t)byteArraySize)
- H5_JNI_FATAL_ERROR(ENVONLY, "translate_rbuf: overflow of byteArraySize");
+ case sizeof(jlong): {
+ jlong longValue;
+ for (x = 0; x < typeSize; x++) {
+ ((char *)&longValue)[x] = ((char *)raw_buf)[i * typeSize + x];
+ }
- if (NULL == (jobj = ENVPTR->NewByteArray(ENVONLY, byteArraySize)))
+ if (NULL ==
+ (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cLong, longValueMid, longValue)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
-
- PIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, &bb,
- "translate_rbuf reference: byte array not pinned");
-
- for (x = 0; x < vlSize; x++) {
- barray[x] = ((jbyte *)objBuf)[vlSize + x];
+ break;
+ }
+ }
+ if (jobj) {
+ ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, jobj);
+ ENVPTR->DeleteLocalRef(ENVONLY, jobj);
+ }
+ else {
+ }
+ }
+ break;
+ } /* H5T_INTEGER */
+ case H5T_FLOAT: {
+ /* Convert each element to a list */
+ for (i = 0; i < (size_t)count; i++) {
+ jobject jobj = NULL;
+ switch (typeSize) {
+ case sizeof(jfloat): {
+ jfloat floatValue;
+ for (x = 0; x < typeSize; x++) {
+ ((char *)&floatValue)[x] = ((char *)raw_buf)[i * typeSize + x];
}
- if (barray)
- UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, jobj ? 0 : JNI_ABORT);
+
+ if (NULL == (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cFloat, floatValueMid,
+ (double)floatValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
}
- default:
- H5_UNIMPLEMENTED(ENVONLY, "translate_rbuf: invalid class type");
+ case sizeof(jdouble): {
+ jdouble doubleValue;
+ for (x = 0; x < typeSize; x++) {
+ ((char *)&doubleValue)[x] = ((char *)raw_buf)[i * typeSize + x];
+ }
+
+ if (NULL == (jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cDouble, doubleValueMid,
+ doubleValue)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
+ }
}
- /* Add it to the list */
if (jobj) {
- ENVPTR->CallBooleanMethod(ENVONLY, jList, arrAddMethod, jobj);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
-
+ ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, jobj);
ENVPTR->DeleteLocalRef(ENVONLY, jobj);
}
}
- if (!found_jList) {
- ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, jList);
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
- ENVPTR->DeleteLocalRef(ENVONLY, jList);
- }
- }
- H5Tclose(memb);
- }
- else if (type_class == H5T_ARRAY) {
- if (!(memb = H5Tget_super(mem_type_id)))
- H5_LIBRARY_ERROR(ENVONLY);
- if ((vlClass = H5Tget_class(memb)) < 0)
- H5_LIBRARY_ERROR(ENVONLY);
- if (!(vlSize = H5Tget_size(memb)))
- H5_LIBRARY_ERROR(ENVONLY);
+ break;
+ } /* H5T_FLOAT */
+ case H5T_REFERENCE: {
+ /* Convert each element to a list */
+ for (i = 0; i < (size_t)count; i++) {
+ jboolean bb;
+ jbyte *barray = NULL;
+ jobject jobj = NULL;
- // TODO
- H5_UNIMPLEMENTED(ENVONLY, "translate_rbuf: invalid H5T_ARRAY type");
- }
+ jsize byteArraySize = (jsize)typeSize;
+ if (typeSize != (size_t)byteArraySize)
+ H5_JNI_FATAL_ERROR(ENVONLY, "translate_rbuf: overflow of byteArraySize");
+
+ if (NULL == (jobj = ENVPTR->NewByteArray(ENVONLY, byteArraySize)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ PIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, &bb,
+ "translate_rbuf reference: byte array not pinned");
+
+ for (x = 0; x < typeSize; x++) {
+ barray[x] = ((jbyte *)raw_buf)[i * typeSize + x];
+ }
+ if (barray)
+ UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)jobj, barray, jobj ? 0 : JNI_ABORT);
+
+ if (jobj) {
+ ENVPTR->CallBooleanMethod(ENVONLY, ret_buf, arrAddMethod, jobj);
+ ENVPTR->DeleteLocalRef(ENVONLY, jobj);
+ }
+ }
+ break;
+ } /* H5T_REFERENCE */
+ default:
+ H5_UNIMPLEMENTED(ENVONLY, "translate_rbuf: invalid class type");
+ break;
+ } /* switch(type_class) */
done:
@@ -4419,10 +4379,12 @@ translate_wbuf(JNIEnv *env, jobjectArray in_buf, jlong mem_type_id, H5T_class_t
{
herr_t status = FAIL;
hid_t memb = H5I_INVALID_HID;
+ jobjectArray jList = NULL;
+ jobject jobj = NULL;
H5T_class_t vlClass;
size_t vlSize;
- jobjectArray jList = NULL;
- size_t i, j, x;
+ size_t i, x;
+ size_t typeSize;
/* retrieve the java.util.ArrayList interface class */
jclass arrCList = ENVPTR->FindClass(ENVONLY, "java/util/ArrayList");
@@ -4446,141 +4408,168 @@ translate_wbuf(JNIEnv *env, jobjectArray in_buf, jlong mem_type_id, H5T_class_t
jmethodID floatValueMid = ENVPTR->GetMethodID(ENVONLY, cFloat, "floatValue", "()F");
jmethodID doubleValueMid = ENVPTR->GetMethodID(ENVONLY, cDouble, "doubleValue", "()D");
- if (type_class == H5T_VLEN) {
- if (!(memb = H5Tget_super(mem_type_id)))
- H5_LIBRARY_ERROR(ENVONLY);
- if ((vlClass = H5Tget_class((hid_t)memb)) < 0)
- H5_LIBRARY_ERROR(ENVONLY);
- if (!(vlSize = H5Tget_size(memb)))
- H5_LIBRARY_ERROR(ENVONLY);
+ if (!(typeSize = H5Tget_size(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
- /* Convert each list to a vlen element */
- for (i = 0; i < (size_t)count; i++) {
- hvl_t vl_elem;
+ switch (type_class) {
+ case H5T_VLEN: {
+ if (!(memb = H5Tget_super(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ if ((vlClass = H5Tget_class((hid_t)memb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(vlSize = H5Tget_size(memb)))
+ H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)in_buf, (jsize)i)))
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ /* Convert each list to a vlen element */
+ for (i = 0; i < (size_t)count; i++) {
+ hvl_t vl_elem;
- /* invoke the toArray method */
- if (mToArray == NULL)
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- jobjectArray array = (jobjectArray)ENVPTR->CallObjectMethod(ENVONLY, jList, mToArray);
- jsize jnelmts = ENVPTR->GetArrayLength(ENVONLY, array);
+ if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)in_buf, (jsize)i)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- if (jnelmts < 0)
- H5_BAD_ARGUMENT_ERROR(ENVONLY, "translate_wbuf: number of VL elements < 0");
+ /* invoke the toArray method */
+ if (mToArray == NULL)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ jobjectArray array = (jobjectArray)ENVPTR->CallObjectMethod(ENVONLY, jList, mToArray);
+ jsize jnelmts = ENVPTR->GetArrayLength(ENVONLY, array);
+
+ if (jnelmts < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "translate_wbuf: number of VL elements < 0");
- vl_elem.len = (size_t)jnelmts;
+ vl_elem.len = (size_t)jnelmts;
- if (NULL == (vl_elem.p = HDmalloc((size_t)jnelmts * vlSize)))
- H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_wbuf: failed to allocate vlen ptr buffer");
+ if (NULL == (vl_elem.p = HDmalloc((size_t)jnelmts * vlSize)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_wbuf: failed to allocate vlen ptr buffer");
- if ((vlClass == H5T_ARRAY) || (vlClass == H5T_COMPOUND) || (vlClass == H5T_VLEN))
translate_wbuf(ENVONLY, (jobjectArray)array, memb, vlClass, (jsize)jnelmts, vl_elem.p);
- else {
- jobject jobj = NULL;
- for (j = 0; j < (size_t)jnelmts; j++) {
- if (NULL ==
- (jobj = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)array, (jsize)j)))
- CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
-
- switch (vlClass) {
- /* case H5T_BOOL: {
- jboolean boolValue = ENVPTR->CallBooleanMethod(ENVONLY, jobj, boolValueMid);
- for (x = 0; x < vlSize; x++) {
- ((char *)vl_elem.p)[j * vlSize + x] = ((char *)&boolValue)[x];
- }
- break;
- } */
- case H5T_INTEGER: {
- switch (vlSize) {
- case sizeof(jbyte): {
- jbyte byteValue = ENVPTR->CallByteMethod(ENVONLY, jobj, byteValueMid);
- for (x = 0; x < vlSize; x++) {
- ((char *)vl_elem.p)[j * vlSize + x] = ((char *)&byteValue)[x];
- }
- break;
- }
- case sizeof(jshort): {
- jshort shortValue = ENVPTR->CallShortMethod(ENVONLY, jobj, shortValueMid);
- for (x = 0; x < vlSize; x++) {
- ((char *)vl_elem.p)[j * vlSize + x] = ((char *)&shortValue)[x];
- }
- break;
- }
- case sizeof(jint): {
- jint intValue = ENVPTR->CallIntMethod(ENVONLY, jobj, intValueMid);
- for (x = 0; x < vlSize; x++) {
- ((char *)vl_elem.p)[j * vlSize + x] = ((char *)&intValue)[x];
- }
- break;
- }
- case sizeof(jlong): {
- jlong longValue = ENVPTR->CallLongMethod(ENVONLY, jobj, longValueMid);
- for (x = 0; x < vlSize; x++) {
- ((char *)vl_elem.p)[j * vlSize + x] = ((char *)&longValue)[x];
- }
- break;
- }
- }
- break;
+
+ HDmemcpy((char *)raw_buf + i * sizeof(hvl_t), &vl_elem, sizeof(hvl_t));
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jList);
+ } /* end for (i = 0; i < count; i++) */
+ break;
+ } /* H5T_VLEN */
+ case H5T_COMPOUND: {
+ H5_UNIMPLEMENTED(ENVONLY, "translate_wbuf: invalid H5T_COMPOUND type");
+ break;
+ } /* H5T_COMPOUND */
+ case H5T_ARRAY: {
+ void *objBuf = NULL;
+
+ if (!(memb = H5Tget_super(mem_type_id)))
+ H5_LIBRARY_ERROR(ENVONLY);
+ if ((vlClass = H5Tget_class(memb)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+ if (!(vlSize = H5Tget_size(memb)))
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ /* Convert each list to an array element */
+ for (i = 0; i < (size_t)count; i++) {
+ if (NULL == (jList = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)in_buf, (jsize)i)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+
+ /* invoke the toArray method */
+ if (mToArray == NULL)
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ jobjectArray array = (jobjectArray)ENVPTR->CallObjectMethod(ENVONLY, jList, mToArray);
+ jsize jnelmts = ENVPTR->GetArrayLength(ENVONLY, array);
+
+ if (jnelmts < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "translate_wbuf: number of array elements < 0");
+
+ if (NULL == (objBuf = HDmalloc((size_t)jnelmts * vlSize)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "translate_wbuf: failed to allocate buffer");
+
+ translate_wbuf(ENVONLY, (jobjectArray)array, memb, vlClass, (jsize)jnelmts, objBuf);
+
+ HDmemcpy((char *)raw_buf + i * vlSize * jnelmts, (char *)objBuf, vlSize * jnelmts);
+
+ ENVPTR->DeleteLocalRef(ENVONLY, jList);
+ } /* end for (i = 0; i < count; i++) */
+ break;
+ } /* H5T_ARRAY */
+ case H5T_INTEGER: {
+ /* Convert each list to an array element */
+ for (i = 0; i < (size_t)count; i++) {
+ if (NULL == (jobj = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)in_buf, (jsize)i)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ switch (typeSize) {
+ case sizeof(jbyte): {
+ jbyte byteValue = ENVPTR->CallByteMethod(ENVONLY, jobj, byteValueMid);
+ for (x = 0; x < typeSize; x++) {
+ ((char *)raw_buf)[i * typeSize + x] = ((char *)&byteValue)[x];
}
- case H5T_FLOAT: {
- switch (vlSize) {
- case sizeof(jfloat): {
- jfloat floatValue = ENVPTR->CallFloatMethod(ENVONLY, jobj, floatValueMid);
- for (x = 0; x < vlSize; x++) {
- ((char *)vl_elem.p)[j * vlSize + x] = ((char *)&floatValue)[x];
- }
- break;
- }
- case sizeof(jdouble): {
- jdouble doubleValue =
- ENVPTR->CallDoubleMethod(ENVONLY, jobj, doubleValueMid);
- for (x = 0; x < vlSize; x++) {
- ((char *)vl_elem.p)[j * vlSize + x] = ((char *)&doubleValue)[x];
- }
- break;
- }
- }
- break;
+ break;
+ }
+ case sizeof(jshort): {
+ jshort shortValue = ENVPTR->CallShortMethod(ENVONLY, jobj, shortValueMid);
+ for (x = 0; x < typeSize; x++) {
+ ((char *)raw_buf)[i * typeSize + x] = ((char *)&shortValue)[x];
}
- case H5T_REFERENCE: {
- jbyte *barray = (jbyte *)ENVPTR->GetByteArrayElements(ENVONLY, jobj, 0);
- for (x = 0; x < vlSize; x++) {
- ((char *)vl_elem.p)[j * vlSize + x] = ((char *)barray)[x];
- }
- ENVPTR->ReleaseByteArrayElements(ENVONLY, jobj, barray, 0);
- break;
+ break;
+ }
+ case sizeof(jint): {
+ jint intValue = ENVPTR->CallIntMethod(ENVONLY, jobj, intValueMid);
+ for (x = 0; x < typeSize; x++) {
+ ((char *)raw_buf)[i * typeSize + x] = ((char *)&intValue)[x];
}
- default:
- H5_UNIMPLEMENTED(ENVONLY, "translate_wbuf: invalid class type");
- break;
+ break;
+ }
+ case sizeof(jlong): {
+ jlong longValue = ENVPTR->CallLongMethod(ENVONLY, jobj, longValueMid);
+ for (x = 0; x < typeSize; x++) {
+ ((char *)raw_buf)[i * typeSize + x] = ((char *)&longValue)[x];
+ }
+ break;
}
- ENVPTR->DeleteLocalRef(ENVONLY, jobj);
}
+ ENVPTR->DeleteLocalRef(ENVONLY, jobj);
}
-
- HDmemcpy((char *)raw_buf + i * sizeof(hvl_t), &vl_elem, sizeof(hvl_t));
-
- ENVPTR->DeleteLocalRef(ENVONLY, jList);
- } /* end for (i = 0; i < count; i++) */
- }
- else if (type_class == H5T_COMPOUND) {
- // TODO
- H5_UNIMPLEMENTED(ENVONLY, "translate_wbuf: invalid H5T_COMPOUND type");
- }
- else if (type_class == H5T_ARRAY) {
- if (!(memb = H5Tget_super(mem_type_id)))
- H5_LIBRARY_ERROR(ENVONLY);
- if ((vlClass = H5Tget_class(memb)) < 0)
- H5_LIBRARY_ERROR(ENVONLY);
- if (!(vlSize = H5Tget_size(memb)))
- H5_LIBRARY_ERROR(ENVONLY);
-
- // TODO
- H5_UNIMPLEMENTED(ENVONLY, "translate_wbuf: invalid H5T_ARRAY type");
- }
+ break;
+ } /* H5T_INTEGER */
+ case H5T_FLOAT: {
+ /* Convert each list to an array element */
+ for (i = 0; i < (size_t)count; i++) {
+ if (NULL == (jobj = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)in_buf, (jsize)i)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ switch (typeSize) {
+ case sizeof(jfloat): {
+ jfloat floatValue = ENVPTR->CallFloatMethod(ENVONLY, jobj, floatValueMid);
+ for (x = 0; x < typeSize; x++) {
+ ((char *)raw_buf)[i * typeSize + x] = ((char *)&floatValue)[x];
+ }
+ break;
+ }
+ case sizeof(jdouble): {
+ jdouble doubleValue = ENVPTR->CallDoubleMethod(ENVONLY, jobj, doubleValueMid);
+ for (x = 0; x < typeSize; x++) {
+ ((char *)raw_buf)[i * typeSize + x] = ((char *)&doubleValue)[x];
+ }
+ break;
+ }
+ }
+ ENVPTR->DeleteLocalRef(ENVONLY, jobj);
+ }
+ break;
+ } /* H5T_FLOAT */
+ case H5T_REFERENCE: {
+ /* Convert each list to an array element */
+ for (i = 0; i < (size_t)count; i++) {
+ if (NULL == (jobj = ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)in_buf, (jsize)i)))
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
+ jbyte *barray = (jbyte *)ENVPTR->GetByteArrayElements(ENVONLY, jobj, 0);
+ for (x = 0; x < typeSize; x++) {
+ ((char *)raw_buf)[i * typeSize + x] = ((char *)barray)[x];
+ }
+ ENVPTR->ReleaseByteArrayElements(ENVONLY, jobj, barray, 0);
+ ENVPTR->DeleteLocalRef(ENVONLY, jobj);
+ }
+ break;
+ }
+ default:
+ H5_UNIMPLEMENTED(ENVONLY, "translate_wbuf: invalid class type");
+ break;
+ } /* switch(type_class) */
done: