Fixed Spelling Errors (#1166)

* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

* Fixed seg fault with xlf on BE with -qintsize=8

* fixed error function string

* spelling corrections via codespell, added new spell check github actions

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* work around for https://github.com/codespell-project/codespell/issues/2137

* misc

* added missing file

* misc

* misc.

* misc

* switch to using Codespell with GitHub Actions

* misc.

* misc.

* fixed more sp errors

* Fix new typos found by codespell.

* fixed proceed with precede

* fixed variable in fortran test

* fixed minnum

* updated spelling list

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

5 files changed, 20 insertions, 20 deletions

diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index 4129f50..49a539b 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -161,7 +161,7 @@ import hdf.hdf5lib.structs.H5O_token_t;
  * disk (source) and in memory (destination).
  * <p>
  * For Java, this ``ANY'' is a problem, as the type of data must always be declared. Furthermore, multidimensional
- * arrays are definitely <i>not</i> layed out contiguously in memory. It would be infeasible to declare a separate
+ * arrays are definitely <i>not</i> laid out contiguously in memory. It would be infeasible to declare a separate
  * routine for every combination of number type and dimensionality. For that reason, the
  * <a href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and size of the
  * data array at run time, and to convert to and from a contiguous array of bytes in synchronized static native C order.
@@ -442,7 +442,7 @@ public class H5 implements java.io.Serializable {
 
     /**
      * Turn on error handling. By default, the C library prints the error stack of the HDF-5 C library on stdout. This
-     * behavior may be reenabled by calling H5error_on().
+     * behavior may be re-enabled by calling H5error_on().
      */
     public synchronized static native void H5error_on();
 
@@ -2097,7 +2097,7 @@ public class H5 implements java.io.Serializable {
      *            IN: Identifier for object to which attributes are attached; may be group, dataset, or named datatype.
      * @param idx_type
      *            IN: The type of index specified by idx_type can be one of the following:
-     *                      H5_INDEX_NAME             An alpha-numeric index by attribute name.
+     *                      H5_INDEX_NAME             An alphanumeric index by attribute name.
      *                      H5_INDEX_CRT_ORDER        An index by creation order.
      * @param order
      *            IN: The order in which the index is to be traversed, as specified by order, can be one of the following:
@@ -2137,7 +2137,7 @@ public class H5 implements java.io.Serializable {
      *            IN: Name of object, relative to location.
      * @param idx_type
      *            IN: The type of index specified by idx_type can be one of the following:
-     *                      H5_INDEX_NAME             An alpha-numeric index by attribute name.
+     *                      H5_INDEX_NAME             An alphanumeric index by attribute name.
      *                      H5_INDEX_CRT_ORDER        An index by creation order.
      * @param order
      *            IN: The order in which the index is to be traversed, as specified by order, can be one of the following:
@@ -4577,7 +4577,7 @@ public class H5 implements java.io.Serializable {
             throws HDF5LibraryException, NullPointerException;
 
     /**
-     * Given a mount point, H5Funmount dissassociates the mount point's file from the file mounted there.
+     * Given a mount point, H5Funmount disassociates the mount point's file from the file mounted there.
      *
      * @param loc_id
      *            The identifier for the location at which the specified file is to be unmounted.
@@ -5205,7 +5205,7 @@ public class H5 implements java.io.Serializable {
      */
     /**
      * retrieves information of all objects (recurvisely) under the group (name) located in the file or group specified
-     * by loc_id upto maximum specified by objMax.
+     * by loc_id up to maximum specified by objMax.
      *
      * @param loc_id
      *            IN: File or group identifier
@@ -7182,7 +7182,7 @@ public class H5 implements java.io.Serializable {
      * @param size
      *            IN: Size the property value.
      * @param def_value
-     *            IN: Defaul value of the property
+     *            IN: Default value of the property
      *
      * @exception HDF5LibraryException
      *                - Error from the HDF-5 Library.
@@ -7202,7 +7202,7 @@ public class H5 implements java.io.Serializable {
      * @param size
      *            IN: Size the property value.
      * @param value
-     *            IN: Defaul value of the property
+     *            IN: Default value of the property
      *
      * @exception HDF5LibraryException
      *                - Error from the HDF-5 Library.
@@ -7245,7 +7245,7 @@ public class H5 implements java.io.Serializable {
      * @param ocpl_id
      *            IN: : Object (dataset or group) creation property list identifier
      * @param attributes
-     *            The maximun and minimum no. of attributes to be stored.
+     *            The maximum and minimum no. of attributes to be stored.
      *
      * <pre>
      *      attributes[0] =  The maximum number of attributes to be stored in compact storage
@@ -7353,7 +7353,7 @@ public class H5 implements java.io.Serializable {
      *              transfer property list.  The FLAGS argument specifies certain
      *              general properties of the filter and is documented below.
      *              The CD_VALUES is an array of CD_NELMTS integers which are
-     *              auxiliary data for the filter.  The integer vlues will be
+     *              auxiliary data for the filter.  The integer values will be
      *              stored in the dataset object header as part of the filter
      *              information.
      *<p>
@@ -8054,9 +8054,9 @@ public class H5 implements java.io.Serializable {
      * @exception HDF5LibraryException
      *                - Error from the HDF-5 Library.
      * @exception NullPointerException
-     *                - aligment array is null.
+     *                - alignment array is null.
      * @exception IllegalArgumentException
-     *                - aligment array is invalid.
+     *                - alignment array is invalid.
      **/
     public synchronized static native int H5Pget_alignment(long plist, long[] alignment) throws HDF5LibraryException,
     NullPointerException, IllegalArgumentException;
@@ -8202,7 +8202,7 @@ public class H5 implements java.io.Serializable {
             throws HDF5LibraryException;
 
     /**
-     * H5Pget_gc_references Returns the current setting for the garbage collection refernces property from a file access
+     * H5Pget_gc_references Returns the current setting for the garbage collection references property from a file access
      * property list.
      *
      * @param fapl_id
@@ -9254,7 +9254,7 @@ public class H5 implements java.io.Serializable {
      * the raw data chunk cache on a per-datset basis.
      *
      * @param dapl_id
-     *            IN: Identifier of the datset access property list.
+     *            IN: Identifier of the dataset access property list.
      * @param rdcc_nslots
      *            IN: Number of elements (objects) in the raw data chunk cache.
      * @param rdcc_nbytes
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
index 532355e..9f94882 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
@@ -114,7 +114,7 @@ public class HDF5LibraryException extends HDF5Exception {
             return "special zero no error";
         }
         else if (err_code == HDF5Constants.H5E_UNINITIALIZED) {
-            return "information is unitialized";
+            return "information is uninitialized";
         }
         else if (err_code == HDF5Constants.H5E_UNSUPPORTED) {
             return "feature is unsupported";
diff --git a/java/src/hdf/hdf5lib/package-info.java b/java/src/hdf/hdf5lib/package-info.java
index 838a266..7edfcb2 100644
--- a/java/src/hdf/hdf5lib/package-info.java
+++ b/java/src/hdf/hdf5lib/package-info.java
@@ -114,7 +114,7 @@
  * disk (source) and in memory (destination).
  * <p>
  * For Java, this ``ANY'' is a problem, as the type of data must always be declared. Furthermore, multidimensional
- * arrays are definitely <i>not</i> layed out contiguously in memory. It would be infeasible to declare a separate
+ * arrays are definitely <i>not</i> laid out contiguously in memory. It would be infeasible to declare a separate
  * routine for every combination of number type and dimensionality. For that reason, the
  *  <a href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and size of the
  * data array at run time, and to convert to and from a contiguous array of bytes in synchronized static native C order.
diff --git a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
index f951bb4..78e6d6c 100644
--- a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
@@ -40,7 +40,7 @@ public class H5F_info2_t implements Serializable{
     public H5_ih_info_t    sohm_msgs_info;
 
     /**
-     * Constructor fot current "global" information about file
+     * Constructor for current "global" information about file
      * @param super_version: Superblock version number
      * @param super_size: Superblock size
      * @param super_ext_size: Superblock extension size
diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c
index 7313c28..02e99af 100644
--- a/java/src/jni/h5util.c
+++ b/java/src/jni/h5util.c
@@ -1348,7 +1348,7 @@ done:
  *      This is a special case subfunction to print the data in a region reference of type blocks.
  *
  * Return:
- *      The function returns FAIL if there was an error, otherwise SUCEED
+ *      The function returns FAIL if there was an error, otherwise SUCCEED
  *-------------------------------------------------------------------------
  */
 static int
@@ -1771,7 +1771,7 @@ done:
  * Purpose: Recursive check for variable length string of a datatype.
  *
  * Return:
- *    TRUE : type conatains any variable length string
+ *    TRUE : type contains any variable length string
  *    FALSE : type doesn't contain any variable length string
  *    Negative value: error occur
  *
@@ -2300,7 +2300,7 @@ done:
  *      This is a special case subfunction to print the data in a region reference of type blocks.
  *
  * Return:
- *      The function returns FAIL if there was an error, otherwise SUCEED
+ *      The function returns FAIL if there was an error, otherwise SUCCEED
  *
  *-------------------------------------------------------------------------
  */